메뉴 건너뛰기




Volumn 390, Issue 6657, 1997, Pages 249-256

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

(151)  Kunst, F a   Ogasawara, N b   Moszer, I a   Albertini, A M c   Alloni, G c   Azevedo, V d   Bertero, M G a,c   Bessieres P d   Bolotin, A d   Borchert, S e   Borriss, R f   Boursier, L a   Brans, A g   Braun, M h   Brignell, S C i   Bron, S j   Brouillet, S a,k   Bruschi, C V l   Caldwell, B m   Capuano, V d   more..


Author keywords

[No Author keywords available]

Indexed keywords

ABC TRANSPORTER; CARBON; GENE PRODUCT; PEPTIDASE; REGULATOR PROTEIN;

EID: 0030731108     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/36786     Document Type: Article
Times cited : (3208)

References (49)
  • 1
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • Fleischmann, R. D. et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512 (1995).
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1
  • 2
    • 0028829125 scopus 로고
    • The minimal gene complement of Mycoplasma genitalium
    • Fraser, C. M. et al. The minimal gene complement of Mycoplasma genitalium. Science 270, 397-403 (1995).
    • (1995) Science , vol.270 , pp. 397-403
    • Fraser, C.M.1
  • 3
    • 0030606607 scopus 로고    scopus 로고
    • Sequence analysis of the genome of the unicellular Cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
    • Kaneko, T. et al. Sequence analysis of the genome of the unicellular Cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res. 3, 109-136 (1996).
    • (1996) DNA Res. , vol.3 , pp. 109-136
    • Kaneko, T.1
  • 4
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
    • Bult, C. J. et al. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science 273, 1058-1073 (1996).
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1
  • 5
    • 10544255079 scopus 로고    scopus 로고
    • Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae
    • Himmelreich, R. et al. Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res. 24, 4420-4449 (1996).
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4420-4449
    • Himmelreich, R.1
  • 6
    • 0031589946 scopus 로고    scopus 로고
    • The yeast genome directory
    • Goffeau, A. et al. The yeast genome directory. Nature 387, 5-105 (1997).
    • (1997) Nature , vol.387 , pp. 5-105
    • Goffeau, A.1
  • 7
    • 0030835739 scopus 로고    scopus 로고
    • The complete genome sequence of the gastric pathogen Helicobacter pylori
    • Tomb, J.-F. et al. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388, 539-547 (1997).
    • (1997) Nature , vol.388 , pp. 539-547
    • Tomb, J.-F.1
  • 8
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • Blattner, F. R. et al. The complete genome sequence of Escherichia coli K-12. Science 277, 1453-1462 (1997).
    • (1997) Science , vol.277 , pp. 1453-1462
    • Blattner, F.R.1
  • 9
    • 1842339410 scopus 로고
    • Organization of the European Bacillus subtilis genome sequencing project
    • Kunst, F., Vassarotti, A. & Danchin, A. Organization of the European Bacillus subtilis genome sequencing project. Microbiology 389, 84-87 (1995).
    • (1995) Microbiology , vol.389 , pp. 84-87
    • Kunst, F.1    Vassarotti, A.2    Danchin, A.3
  • 10
    • 0029911218 scopus 로고    scopus 로고
    • The systematic sequencing of the Bacillus subtilis genome in Japan
    • Ogasawara, N. & Yoshikawa, H. The systematic sequencing of the Bacillus subtilis genome in Japan. Microbiology 142, 2993-2994 (1996).
    • (1996) Microbiology , vol.142 , pp. 2993-2994
    • Ogasawara, N.1    Yoshikawa, H.2
  • 11
    • 0026752273 scopus 로고
    • Bacillus subtilis and its relatives: Molecular biological and industrial workhorses
    • Harwood, C. R. Bacillus subtilis and its relatives: molecular biological and industrial workhorses. Trends Biotechnol. 10, 247-256 (1992).
    • (1992) Trends Biotechnol. , vol.10 , pp. 247-256
    • Harwood, C.R.1
  • 12
    • 0030457111 scopus 로고    scopus 로고
    • Molecular genetics of sporulation in Bacillus subtilis
    • Stragier, P. & Losick, R. Molecular genetics of sporulation in Bacillus subtilis. Annu. Rev. Genet. 30, 297-341 (1996).
    • (1996) Annu. Rev. Genet. , vol.30 , pp. 297-341
    • Stragier, P.1    Losick, R.2
  • 13
    • 0029974543 scopus 로고    scopus 로고
    • Who's competent and when: Regulation of natural genetic competence in bacteria
    • Solomon, J. M. & Grossman, A. D. Who's competent and when: regulation of natural genetic competence in bacteria. Trends Genet. 12, 150-155 (1996).
    • (1996) Trends Genet. , vol.12 , pp. 150-155
    • Solomon, J.M.1    Grossman, A.D.2
  • 14
    • 0029955765 scopus 로고    scopus 로고
    • The European Bacillus subtilis genome sequencing project: Current status and accessibility of the data from a new World Wide Web site
    • Moszer, I., Kunst, F. & Danchin, A. The European Bacillus subtilis genome sequencing project: current status and accessibility of the data from a new World Wide Web site. Microbiology 142, 2987-2991 (1996).
    • (1996) Microbiology , vol.142 , pp. 2987-2991
    • Moszer, I.1    Kunst, F.2    Danchin, A.3
  • 15
    • 0029149129 scopus 로고
    • Identification and characterization of new DNA replication terminators in Bacillus subtilis
    • Franks, A. H., Griffiths, A. A. & Wake, R. G. Identification and characterization of new DNA replication terminators in Bacillus subtilis. Mol. Microbiol. 17, 13-23 (1995).
    • (1995) Mol. Microbiol. , vol.17 , pp. 13-23
    • Franks, A.H.1    Griffiths, A.A.2    Wake, R.G.3
  • 16
    • 0029985398 scopus 로고    scopus 로고
    • Asymmetric substitution patterns in the two DNA strands of bacteria
    • Lobry, J. R. Asymmetric substitution patterns in the two DNA strands of bacteria. Mol. Biol. Evol. 13, 660-665 (1996).
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 660-665
    • Lobry, J.R.1
  • 18
    • 0019383387 scopus 로고
    • The universal dinucleotide asymmetry rules in DNA and amino acid codon choice
    • Nussinov, R. The universal dinucleotide asymmetry rules in DNA and amino acid codon choice. Nucleic Acids Res. 17, 237-244 (1981).
    • (1981) Nucleic Acids Res. , vol.17 , pp. 237-244
    • Nussinov, R.1
  • 19
    • 0026600016 scopus 로고
    • Statistical analyses of counts and distributions of restriction sites in DNA sequences
    • Karlin, S., Burge, C. & Campbell, A. M. Statistical analyses of counts and distributions of restriction sites in DNA sequences. Nucleic Acids Res. 20, 1363-1370 (1992).
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1363-1370
    • Karlin, S.1    Burge, C.2    Campbell, A.M.3
  • 20
    • 0026502711 scopus 로고
    • Over- and under-representation of short oligonucleotides in DNA sequences
    • Burge, C., Campbell, A. M. & Karlin, S. Over- and under-representation of short oligonucleotides in DNA sequences. Proc. Natl Acad. Sci. USA 89, 1358-1362 (1992).
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 1358-1362
    • Burge, C.1    Campbell, A.M.2    Karlin, S.3
  • 21
    • 0031589052 scopus 로고    scopus 로고
    • Sequence analysis of the 36-kb region between gntZ and trnY genes of Bacillus subtilis genome
    • Kasahara, Y., Nakai, S. & Ogasawara, H. Sequence analysis of the 36-kb region between gntZ and trnY genes of Bacillus subtilis genome. DNA Res. 4, 155-159 (1997).
    • (1997) DNA Res. , vol.4 , pp. 155-159
    • Kasahara, Y.1    Nakai, S.2    Ogasawara, H.3
  • 22
    • 0030815738 scopus 로고    scopus 로고
    • The Bacillus subtilis genome from gerBC (311°) to licR (334°)
    • Presecan, E. et al. The Bacillus subtilis genome from gerBC (311°) to licR (334°). Microbiology 143, 3313-3328 (1997).
    • (1997) Microbiology , vol.143 , pp. 3313-3328
    • Presecan, E.1
  • 23
    • 0001380494 scopus 로고
    • Induced biochemical mutations in Bacillus subtilis
    • Burkholder, P. R. & Giles, N. H. Induced biochemical mutations in Bacillus subtilis. Am. J. Bot. 33, 345-348 (1947).
    • (1947) Am. J. Bot. , vol.33 , pp. 345-348
    • Burkholder, P.R.1    Giles, N.H.2
  • 24
    • 0026754531 scopus 로고
    • Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes
    • Daniels, D. L., Plunkett, G. III, Burland, V. & Blattner, F. R. Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. Science 257, 771-778 (1992).
    • (1992) Science , vol.257 , pp. 771-778
    • Daniels, D.L.1    Plunkett III, G.2    Burland, V.3    Blattner, F.R.4
  • 25
    • 0028179987 scopus 로고
    • Bacillus subtilis SpoIIIE protein required for DNA segregation during asymmetric cell division
    • Wu, L. J. & Errington, J. Bacillus subtilis SpoIIIE protein required for DNA segregation during asymmetric cell division. Science 264, 572-575 (1994).
    • (1994) Science , vol.264 , pp. 572-575
    • Wu, L.J.1    Errington, J.2
  • 26
    • 0027478169 scopus 로고
    • Stability and asymmetric replication of the Bacillus subtilis 168 chromosome structure
    • Itaya, M. Stability and asymmetric replication of the Bacillus subtilis 168 chromosome structure. J. Bacteriol. 175, 741-749 (1993).
    • (1993) J. Bacteriol. , vol.175 , pp. 741-749
    • Itaya, M.1
  • 27
    • 0029986908 scopus 로고    scopus 로고
    • Palingol: A declarative programming language to describe nuclei acids' secondary structures and to scan sequence database
    • Billoud, B., Kontic, M. & Viari, A. Palingol: a declarative programming language to describe nuclei acids' secondary structures and to scan sequence database. Nucleic Acids Res. 24, 1395-1403 (1996).
    • (1996) Nucleic Acids Res. , vol.24 , pp. 1395-1403
    • Billoud, B.1    Kontic, M.2    Viari, A.3
  • 28
    • 0025864008 scopus 로고
    • Identifying potential tRNA genes in genomic DNA sequences
    • Fichant, G. A. & Burks, C. Identifying potential tRNA genes in genomic DNA sequences. J. Mol. Biol. 220, 659-671 (1991).
    • (1991) J. Mol. Biol. , vol.220 , pp. 659-671
    • Fichant, G.A.1    Burks, C.2
  • 29
    • 0025663103 scopus 로고
    • Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures
    • d'Aubenton Carafa, Y., Brody, E. & Thermes, C. Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures. J. Mol. Biol. 216, 835-858 (1990).
    • (1990) J. Mol. Biol. , vol.216 , pp. 835-858
    • D'Aubenton Carafa, Y.1    Brody, E.2    Thermes, C.3
  • 31
    • 0031589010 scopus 로고    scopus 로고
    • Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli
    • Mizuno, T. Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli. DNA Res. 4, 161-168 (1997).
    • (1997) DNA Res. , vol.4 , pp. 161-168
    • Mizuno, T.1
  • 32
    • 0029897997 scopus 로고    scopus 로고
    • Aspartyl-phosphate phosphatases deactivate the response regulator components of the sporulation signal transduction system in Bacillus subtilis
    • Perego, M., Glaser, P. & Hoch, J. A. Aspartyl-phosphate phosphatases deactivate the response regulator components of the sporulation signal transduction system in Bacillus subtilis. Mol. Microbiol. 19, 1151-1157 (1996).
    • (1996) Mol. Microbiol. , vol.19 , pp. 1151-1157
    • Perego, M.1    Glaser, P.2    Hoch, J.A.3
  • 33
    • 0030868265 scopus 로고    scopus 로고
    • Bacillus subtilis contains four closely related type I signal peptidases with overlapping substrate specificities: Constitutive and temporally controlled expression of different sip genes
    • Tjalsma, H. et al. Bacillus subtilis contains four closely related type I signal peptidases with overlapping substrate specificities: constitutive and temporally controlled expression of different sip genes. J. Biol. Chem. 272, 25983-25992 (1997).
    • (1997) J. Biol. Chem. , vol.272 , pp. 25983-25992
    • Tjalsma, H.1
  • 34
    • 0031588599 scopus 로고    scopus 로고
    • Comparison between the Escherichia coli and Bacillus subtilis genomes suggests that a major function of polynucleotide phosphorylase is to synthesize CDP
    • Danchin, A. Comparison between the Escherichia coli and Bacillus subtilis genomes suggests that a major function of polynucleotide phosphorylase is to synthesize CDP. DNA Res. 4, 9-18 (1997).
    • (1997) DNA Res. , vol.4 , pp. 9-18
    • Danchin, A.1
  • 35
    • 0026717168 scopus 로고
    • Unsaturated and branched chain-fatty acids in temperature adaptation of Bacillus subtilis and Bacillus megaterium
    • Suutari, M. & Laakso, S. Unsaturated and branched chain-fatty acids in temperature adaptation of Bacillus subtilis and Bacillus megaterium. Biochim. Biophys. Acta 1126, 119-124 (1992).
    • (1992) Biochim. Biophys. Acta , vol.1126 , pp. 119-124
    • Suutari, M.1    Laakso, S.2
  • 36
    • 0030047027 scopus 로고    scopus 로고
    • Polynucleotide phosphorylase is necessary for competence development in Bacillus subtilis
    • Luttinger, A., Hahn, J. & Dubnau, D. Polynucleotide phosphorylase is necessary for competence development in Bacillus subtilis. Mol. Microbiol. 19, 343-356 (1996).
    • (1996) Mol. Microbiol. , vol.19 , pp. 343-356
    • Luttinger, A.1    Hahn, J.2    Dubnau, D.3
  • 37
    • 0026634163 scopus 로고
    • A comparison of several similarity indices used in the classification of protein sequences: A multivariate analysis
    • Landès, C., Hénaut, A. & Risler, J.-L. A comparison of several similarity indices used in the classification of protein sequences: a multivariate analysis. Nucleic Acids Res. 20, 3631-3637 (1992).
    • (1992) Nucleic Acids Res. , vol.20 , pp. 3631-3637
    • Landès, C.1    Hénaut, A.2    Risler, J.-L.3
  • 38
    • 0030929643 scopus 로고    scopus 로고
    • LASSAP, a LArge Scale Sequence compArison Package
    • Glémet, E. & Codani, J.-J. LASSAP, a LArge Scale Sequence compArison Package. Comput. Appl. Biosci. 13, 137-143 (1997).
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 137-143
    • Glémet, E.1    Codani, J.-J.2
  • 39
    • 0345130783 scopus 로고
    • Analysis of a Bacillus subtilis genome fragment using a co-operative computer system prototype
    • Médigue, C., Moszer, I., Viari, A. & Danchin, A. Analysis of a Bacillus subtilis genome fragment using a co-operative computer system prototype. Gene 165, GC37-GC51 (1995).
    • (1995) Gene , vol.165
    • Médigue, C.1    Moszer, I.2    Viari, A.3    Danchin, A.4
  • 40
    • 0029842597 scopus 로고    scopus 로고
    • The phage-like element PBSX and part of the skin element, which are resident at different locations on the Bacillus subtilis chromosome, are highly homologous
    • Krogh, S., O'Reilly, M., Nolan, N. & Devine, K. M. The phage-like element PBSX and part of the skin element, which are resident at different locations on the Bacillus subtilis chromosome, are highly homologous. Microbiology 142, 2031-2040 (1996).
    • (1996) Microbiology , vol.142 , pp. 2031-2040
    • Krogh, S.1    O'Reilly, M.2    Nolan, N.3    Devine, K.M.4
  • 41
    • 0028011141 scopus 로고
    • The Bacillus subtilis spoVD gene encodes a mother-cell-specific penicillin-binding protein required for spore morphogenesis
    • Daniel, R. A., Drake, S., Buchanan, C. E., Scholle, R. & Errington, J. The Bacillus subtilis spoVD gene encodes a mother-cell-specific penicillin-binding protein required for spore morphogenesis. J. Mol. Biol. 235, 209-220 (1994).
    • (1994) J. Mol. Biol. , vol.235 , pp. 209-220
    • Daniel, R.A.1    Drake, S.2    Buchanan, C.E.3    Scholle, R.4    Errington, J.5
  • 42
    • 0001134202 scopus 로고
    • Requirements for transformation in Bacillus subtilis
    • Anagnostopoulos, C. & Spizizen, J. Requirements for transformation in Bacillus subtilis. J. Bacteriol. 81, 741-746 (1961).
    • (1961) J. Bacteriol. , vol.81 , pp. 741-746
    • Anagnostopoulos, C.1    Spizizen, J.2
  • 43
    • 0027213310 scopus 로고
    • An ordered collection of Bacillus subtilis DNA segments cloned in yeast artificial chromosomes
    • Azevedo, V. et al. An ordered collection of Bacillus subtilis DNA segments cloned in yeast artificial chromosomes. Proc. Natl Acad. Sci. USA 90, 6047-6051 (1993).
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 6047-6051
    • Azevedo, V.1
  • 44
    • 0027423563 scopus 로고
    • Bacillus subtilis genome project: Cloning and sequencing of the 97 kb region from 325° to 333°
    • Glaser, P. et al. Bacillus subtilis genome project: cloning and sequencing of the 97 kb region from 325° to 333°. Mol. Microbiol. 10, 371-384 (1993).
    • (1993) Mol. Microbiol. , vol.10 , pp. 371-384
    • Glaser, P.1
  • 45
    • 0028700721 scopus 로고
    • Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin
    • Ogasawara, N., Nakai, S. & Yoshikawa, H. Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin. DNA Res. 1, 1-14 (1994).
    • (1994) DNA Res. , vol.1 , pp. 1-14
    • Ogasawara, N.1    Nakai, S.2    Yoshikawa, H.3
  • 46
    • 0029935873 scopus 로고    scopus 로고
    • A new approach using multiplex long accurate PCR and yeast artificial chromosomes for bacterial chromosome mapping and sequencing
    • Sorokin, A. et al. A new approach using multiplex long accurate PCR and yeast artificial chromosomes for bacterial chromosome mapping and sequencing. Genome Res. 6, 448-453 (1996).
    • (1996) Genome Res. , vol.6 , pp. 448-453
    • Sorokin, A.1
  • 47
    • 0000241874 scopus 로고
    • GENMARK: Parallel gene recognition for both DNA strands
    • Borodovsky, M. & McIninch, J. GENMARK: parallel gene recognition for both DNA strands. Comput. Chem. 17, 123-133 (1993).
    • (1993) Comput. Chem. , vol.17 , pp. 123-133
    • Borodovsky, M.1    McIninch, J.2
  • 48
    • 0029134925 scopus 로고
    • A frameshift error detection algorithm for DNA sequencing projects
    • Fichant, G. A. & Quentin, Y. A frameshift error detection algorithm for DNA sequencing projects. Nucleic Acids Res. 23, 2900-2908 (1995).
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2900-2908
    • Fichant, G.A.1    Quentin, Y.2
  • 49
    • 0028935455 scopus 로고
    • SubtiList: A relational database for the Bacillus subtilis genome
    • Moszer, I., Glaser, P. & Danchin, A. SubtiList: a relational database for the Bacillus subtilis genome. Microbiology 141, 261-268 (1995).
    • (1995) Microbiology , vol.141 , pp. 261-268
    • Moszer, I.1    Glaser, P.2    Danchin, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.