메뉴 건너뛰기




Volumn 29, Issue 12, 2011, Pages 1103-1108

DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes

Author keywords

[No Author keywords available]

Indexed keywords

CANCER GENOME; DNA INTERACTION; DNA REPLICATIONS; GENOMIC REGIONS; LONG RANGE INTERACTIONS; SPATIAL PROXIMITY; TEST DATA;

EID: 83255189766     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.2030     Document Type: Article
Times cited : (133)

References (32)
  • 1
    • 77249119762 scopus 로고    scopus 로고
    • The landscape of somatic copy-number alteration across human cancers
    • Beroukhim, R. et al. The landscape of somatic copy-number alteration across human cancers. Nature 463, 899-905 (2010).
    • (2010) Nature , vol.463 , pp. 899-905
    • Beroukhim, R.1
  • 2
    • 0035997368 scopus 로고    scopus 로고
    • DNA replication in eukaryotic cells
    • DOI 10.1146/annurev.biochem.71.110601.135425
    • Bell, S.P. & Dutta, A. DNA replication in eukaryotic cells. Annu. Rev. Biochem. 71, 333-374 (2002). (Pubitemid 34800224)
    • (2002) Annual Review of Biochemistry , vol.71 , pp. 333-374
    • Bell, S.P.1    Dutta, A.2
  • 3
    • 77956879643 scopus 로고    scopus 로고
    • Evaluating genome-scale approaches to eukaryotic DNA replication
    • Gilbert, D.M. Evaluating genome-scale approaches to eukaryotic DNA replication. Nat. Rev. Genet. 11, 673-684 (2010).
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 673-684
    • Gilbert, D.M.1
  • 4
    • 76349123622 scopus 로고    scopus 로고
    • Sequencing newly replicated DNA reveals widespread plasticity in human replication timing
    • Hansen, R.S. et al. Sequencing newly replicated DNA reveals widespread plasticity in human replication timing. Proc. Natl. Acad. Sci. USA 107, 139-144 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 139-144
    • Hansen, R.S.1
  • 6
    • 70349873824 scopus 로고    scopus 로고
    • Comprehensive mapping of long-range interactions reveals folding principles of the human genome
    • Lieberman-Aiden, E. et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326, 289-293 (2009).
    • (2009) Science , vol.326 , pp. 289-293
    • Lieberman-Aiden, E.1
  • 7
    • 33745251622 scopus 로고    scopus 로고
    • In and out of the Replication Factory
    • DOI 10.1016/j.cell.2006.06.014, PII S0092867406007720
    • Meister, P., Taddei, A. & Gasser, S.M. In and out of the replication factory. Cell 125, 1233-1235 (2006). (Pubitemid 43929099)
    • (2006) Cell , vol.125 , Issue.7 , pp. 1233-1235
    • Meister, P.1    Taddei, A.2    Gasser, S.M.3
  • 8
    • 77952994784 scopus 로고    scopus 로고
    • Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
    • Ryba, T. et al. Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types. Genome Res. 20, 761-770 (2010).
    • (2010) Genome Res. , vol.20 , pp. 761-770
    • Ryba, T.1
  • 9
    • 23344444636 scopus 로고    scopus 로고
    • Spontaneous homologous recombination is induced by collapsed replication forks that are caused by endogenous DNA single-strand breaks
    • DOI 10.1128/MCB.25.16.7158-7169.2005
    • Saleh-Gohari, N. et al. Spontaneous homologous recombination is induced by collapsed replication forks that are caused by endogenous DNA single-strand breaks. Mol. Cell. Biol. 25, 7158-7169 (2005). (Pubitemid 41105912)
    • (2005) Molecular and Cellular Biology , vol.25 , Issue.16 , pp. 7158-7169
    • Saleh-Gohari, N.1    Bryant, H.E.2    Schultz, N.3    Parker, K.M.4    Cassel, T.N.5    Helleday, T.6
  • 10
    • 4544281398 scopus 로고    scopus 로고
    • Choreography of the DNA damage response: Spatiotemporal relationships among checkpoint and repair proteins
    • DOI 10.1016/j.cell.2004.08.015, PII S0092867404007974
    • Lisby, M., Barlow, J.H., Burgess, R.C. & Rothstein, R. Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins. Cell 118, 699-713 (2004). (Pubitemid 39221730)
    • (2004) Cell , vol.118 , Issue.6 , pp. 699-713
    • Lisby, M.1    Barlow, J.H.2    Burgess, R.C.3    Rothstein, R.4
  • 12
    • 59249105978 scopus 로고    scopus 로고
    • A microhomology-mediated break-induced replication model for the origin of human copy number variation
    • Hastings, P.J., Ira, G. & Lupski, J.R. A microhomology-mediated break-induced replication model for the origin of human copy number variation. PLoS Genet. 5, e1000327 (2009).
    • (2009) PLoS Genet. , vol.5
    • Hastings, P.J.1    Ira, G.2    Lupski, J.R.3
  • 13
    • 2642674401 scopus 로고    scopus 로고
    • Localisation and distance between ABL and BCR genes in interphase nuclei of bone marrow cells of control donors and patients with chronic myeloid leukaemia
    • DOI 10.1007/s004390050547
    • Lukasova, E. et al. Localisation and distance between ABL and BCR genes in interphase nuclei of bone marrow cells of control donors and patients with chronic myeloid leukaemia. Hum. Genet. 100, 525-535 (1997). (Pubitemid 28072350)
    • (1997) Human Genetics , vol.100 , Issue.5-6 , pp. 525-535
    • Lukasova, E.1    Kozubek, S.2    Kozubek, M.3    Kjeronska, J.4    Ryznar, L.5    Horakova, J.6    Krahulcova, E.7    Horneck, G.8
  • 14
    • 79151478493 scopus 로고    scopus 로고
    • Genome organization influences partner selection for chromosomal rearrangements
    • Wijchers, P.J. & de Laat, W. Genome organization influences partner selection for chromosomal rearrangements. Trends Genet. 27, 63-71 (2011).
    • (2011) Trends Genet. , vol.27 , pp. 63-71
    • Wijchers, P.J.1    De Laat, W.2
  • 15
    • 62849083222 scopus 로고    scopus 로고
    • The emerging role of nuclear architecture in DNA repair and genome maintenance
    • Misteli, T. & Soutoglou, E. The emerging role of nuclear architecture in DNA repair and genome maintenance. Nat. Rev. Mol. Cell Biol. 10, 243-254 (2009).
    • (2009) Nat. Rev. Mol. Cell Biol. , vol.10 , pp. 243-254
    • Misteli, T.1    Soutoglou, E.2
  • 17
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • TCGA
    • TCGA. Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 455, 1061-1068 (2008).
    • (2008) Nature , vol.455 , pp. 1061-1068
  • 18
    • 79959838081 scopus 로고    scopus 로고
    • Integrated genomic analyses of ovarian carcinoma
    • TCGA
    • TCGA. Integrated genomic analyses of ovarian carcinoma. Nature 474, 609-615 (2011).
    • (2011) Nature , vol.474 , pp. 609-615
  • 19
    • 24644499002 scopus 로고    scopus 로고
    • Molecular biology: Recombination regulation by transcription-induced cohesin dissociation in rDNA repeats
    • DOI 10.1126/science.1116102
    • Kobayashi, T. & Ganley, A.R. Recombination regulation by transcription-induced cohesin dissociation in rDNA repeats. Science 309, 1581-1584 (2005). (Pubitemid 41266487)
    • (2005) Science , vol.309 , Issue.5740 , pp. 1581-1584
    • Kobayashi, T.1    Ganley, A.R.D.2
  • 21
    • 63449141981 scopus 로고    scopus 로고
    • Human mutation rate associated with DNA replication timing
    • Stamatoyannopoulos, J.A. et al. Human mutation rate associated with DNA replication timing. Nat. Genet. 41, 393-395 (2009).
    • (2009) Nat. Genet. , vol.41 , pp. 393-395
    • Stamatoyannopoulos, J.A.1
  • 22
    • 0036156599 scopus 로고    scopus 로고
    • Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: Disease-related genes in timing-switch regions
    • Watanabe, Y. et al. Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: disease-related genes in timing-switch regions. Hum. Mol. Genet. 11, 13-21 (2002). (Pubitemid 34100764)
    • (2002) Human Molecular Genetics , vol.11 , Issue.1 , pp. 13-21
    • Watanabe, Y.1    Fujiyama, A.2    Ichiba, Y.3    Hattori, M.4    Yada, T.5    Sakaki, Y.6    Ikemura, T.7
  • 24
    • 83255184344 scopus 로고    scopus 로고
    • Probability and Statistics in Aerospace Engineering
    • Rheinfurth, M.H. & Howell, L.W. Probability and Statistics in Aerospace Engineering. NASA, (1998).
    • (1998) NASA
    • Rheinfurth, M.H.1    Howell, L.W.2
  • 26
    • 79961029908 scopus 로고    scopus 로고
    • DNA secondary structures and epigenetic determinants of cancer genome evolution
    • De, S. & Michor, F. DNA secondary structures and epigenetic determinants of cancer genome evolution. Nat. Struct. Mol. Biol. 18, 950-955 (2011).
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 950-955
    • De, S.1    Michor, F.2
  • 27
    • 73749085274 scopus 로고    scopus 로고
    • Non-B DNA structure-induced genetic instability and evolution
    • Zhao, J., Bacolla, A., Wang, G. & Vasquez, K.M. Non-B DNA structure-induced genetic instability and evolution. Cell. Mol. Life Sci. 67, 43-62 (2010).
    • (2010) Cell. Mol. Life Sci. , vol.67 , pp. 43-62
    • Zhao, J.1    Bacolla, A.2    Wang, G.3    Vasquez, K.M.4
  • 28
    • 0023676214 scopus 로고
    • Consequences of the depletion of cellular deoxynucleoside triphosphate pools on the excision-repair process in cultured human fibroblasts
    • Snyder, R.D. Consequences of the depletion of cellular deoxynucleoside triphosphate pools on the excision-repair process in cultured human fibroblasts. Mutat. Res. 200, 193-199 (1988).
    • (1988) Mutat. Res. , vol.200 , pp. 193-199
    • Snyder, R.D.1
  • 29
    • 0242582958 scopus 로고    scopus 로고
    • Deoxyribonucleotide Pool Imbalance Stimulates Deletions in HeLa Cell Mitochondrial DNA
    • DOI 10.1074/jbc.C300401200
    • Song, S., Wheeler, L.J. & Mathews, C.K. Deoxyribonucleotide pool imbalance stimulates deletions in HeLa cell mitochondrial DNA. J. Biol. Chem. 278, 43893-43896 (2003). (Pubitemid 37377127)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.45 , pp. 43893-43896
    • Song, S.1    Wheeler, L.J.2    Mathews, C.K.3
  • 30
    • 77955079173 scopus 로고    scopus 로고
    • Highly mutagenic and severely imbalanced dNTP pools can escape detection by the S-phase checkpoint
    • Kumar, D., Viberg, J., Nilsson, A.K. & Chabes, A. Highly mutagenic and severely imbalanced dNTP pools can escape detection by the S-phase checkpoint. Nucleic Acids Res. 38, 3975-3983 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. 3975-3983
    • Kumar, D.1    Viberg, J.2    Nilsson, A.K.3    Chabes, A.4
  • 31
    • 77956838065 scopus 로고    scopus 로고
    • Advances in understanding cancer genomes through second-generation sequencing
    • Meyerson, M., Gabriel, S. & Getz, G. Advances in understanding cancer genomes through second-generation sequencing. Nat. Rev. Genet. 11, 685-696 (2010).
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 685-696
    • Meyerson, M.1    Gabriel, S.2    Getz, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.