Replication timing of human chromosome 6

Cell Cycle

Volumn 4, Issue 1, 2005, Pages 172-176

  Woodfine, Kathryn ^a,d   Beare, David M ^a   Ichimura, Koichi ^b   Debernardi, Silvana ^c   Mungall, Andrew J ^a   Fiegler, Heike ^a   Collins, V Peter ^b   Carter, Nigel P ^a   Dunham, Ian ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c ST BARTHOLOMEW S HOSPITAL   (United Kingdom)

^d KING'S COLLEGE LONDON   (United Kingdom)

Author keywords

DNA replication; Genomic microarrays; MHC region

Indexed keywords

ARTICLE; CHROMOSOME 6; CHROMOSOME ANALYSIS; CHROMOSOME REPLICATION; DNA MICROARRAY; DNA REPLICATION; GENOME ANALYSIS; HUMAN; HUMAN CELL; HUMAN GENOME; MAJOR HISTOCOMPATIBILITY COMPLEX; MOLECULAR CLONING; TRANSCRIPTION REGULATION;

EUKARYOTA;

EID: 17444425224     PISSN: 15384101     EISSN: 15514005     Source Type: Journal    
DOI: 10.4161/cc.4.1.1350     Document Type: Article

References (23)

1. Raghuraman MK, Winzeler EA, Collingwood D, Hung S, Wodicka L, Conway A, Lockhart DJ, Davis RW, Brewer BJ, Fangman WL. Replication dynamics of the yeast genome. Science 2001; 294:115-21.
2. Schubeler D, Scalzo D, Kooperberg C, van Steenset B, Delrow J, Groudine M. Genome-wide DNA replication profile for Drosophila melanogaster A link between transcription and replication timing. Nat Genet 2002; 32:438-42.
3. Woodfine K, Fiegler H, Beare DM, Collings JE, McCann OT, Young BD, Debernardi S, Mott R, Dunham I, Carter NP. Replication timing of the human genome. Hum Mol Genet 2004; 13:191-202.
4. Hassan AB, Cook PR. Does transcription by RNA polymerase play a direct role in the initiation of replication? J Cell Sci 1994; 107:1381-7.
5. Hassan AB, Errington RJ, White NS, Jackson DA, Cook PR. Replication and transcription sites are colocalized in human cells. J Cell Sci 1994; 107:425-34.
6. Gilbert DM. Nuclear position leaves its mark on replication timing. J Cell Biol 2001; 152:F11-5.
7. Gilbert DM. Replication timing and transcriptional control: Beyond cause and effect. Curr Opin Cell Biol 2002; 14:377-83.
8. Pinkel D, Segraves R, Sudar D, Clark S, Poole I, Kowbel D, Collins C, Kuo WL, Chen C, Zhai Y. High resolution analysis of DNA copy number variation using comparative genomic hybridisation to microarrays. Nat Genet 1998; 20:207-11.
9. The International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 2001; 409:860-921.
10. Mungall AJ, Palmer SA, Sims SK, Edwards CA, Ashurst JL, Wilming L, Jones MC, Horton R, Hunt SE, Scott CE, et al. The DNA sequence and analysis of human chromosome 6. Nature 2003; 425:805-11.
11. Tenzen T, Yamagata T, Fukagawa T, Sugaya K, Ando A, Inoko H, Gojobori T, Fujiyama A, Okumura K, Ikemura T. Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex. Mol Cell Biol 1997; 17:4043-50.
12. Fiegler H, Carr P, Douglas EJ, Burford DC, Hunt S, Smith J, Vetrie D, Gorman P, Tomlison IP, Carter NP. DNA microarrays for comparative genomic hybridisation based on DOP-PCR amplification of BAG and PAC clones. Genes Chromosomes Cancer 2003; 36:361-74.
13. Stewart CA, Horton R, Allcock RJ, Ashurst JL, Atrazhev AM, Coggill R, Dunham I, Forbes S, Halls K, Howson JM, et al. Complete MHC haplotype sequencing for common disease gene mapping. Genome Res 2004.
14. Jain AN, Tokuyasu TA, Snijders AM, Segraves R, Albertson DG, Pinkel D. Fully automatic quantification of microarray image data. Genome Res 2002; 12:325-32.
15. Biamonti G, Perini G, Weighardt F, Riva S, Giacca M, NOrio P, Zentilin L, Diviacco S, Dimitrova D, Falaschi A. A human DNA replication origin: Localization and transcriptional characterization. Chromosoma 1992; 102:524-31.
16. Cook PR. The organization of replication and transcription. Science 1999; 284:1790-5.
17. Gilbert DM. Replication timing and metazoan evolution. Nat Genet 2002; 32:336-7.
18. McCune HJ, Donaldson AD. DNA replication: Telling time with microarrays. Genome Biol 2003; 4:204.
19. The MHC Sequencing Consortium. Complete sequence and gene map of a human major histocompatibility complex. The MHC sequencing consortium. Nature 1999; 401:921-3.
20. Dimitrova DS, Gilbert DM. Temporally coordinated assembly and disassembly of replication factories in the absence of DNA synthesis. Nat Cell Biol 2000; 2:686-94.
21. Schermelleh L, Solovei I, Zink D, Cremer T. Two-color fluorescence labeling of early and mid-to-late replicating chromatin in living cells. Chromosome Res 2001; 9:77-80.
22. Volpi EV, Chevret E, Jones T, Vatcheva R, Williamsn J, Beck S, Campbell RD, Goldsworthy M, Powis SH, Ragoussis J, et al. Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei. J Cell Sci 2000; 113:1565-76.
23. Ishkanian AS, Malloff CA, Watson SK, DeLeeuw RJ, Chi B, Coe BP, Snijders A, Albertson DG, Pinkel D, Marra MA, et al. A tiling resolution DNA microarray with complete coverage of the human genome. Nat Genet 2004; 36:299-303.