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Volumn 21, Issue 5, 2006, Pages 719-726

Isolating apparently pure libraries of replication origins from complex genomes

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BIOLOGICAL MARKER;

EID: 33344470620     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2006.01.015     Document Type: Article
Times cited : (58)

References (52)
  • 1
    • 0023646792 scopus 로고
    • The localization of replication origins on ARS plasmids in S. cerevisiae
    • B.J. Brewer, and W.L. Fangman The localization of replication origins on ARS plasmids in S. cerevisiae Cell 51 1987 463 471
    • (1987) Cell , vol.51 , pp. 463-471
    • Brewer, B.J.1    Fangman, W.L.2
  • 2
    • 0346484153 scopus 로고
    • Autonomously replicating sequences in Saccharomyces cerevisiae
    • C.S. Chan, and B.K. Tye Autonomously replicating sequences in Saccharomyces cerevisiae Proc. Natl. Acad. Sci. USA 77 1980 6329 6333
    • (1980) Proc. Natl. Acad. Sci. USA , vol.77 , pp. 6329-6333
    • Chan, C.S.1    Tye, B.K.2
  • 4
    • 0023853757 scopus 로고
    • Transcriptional elements as components of eukaryotic origins of DNA replication
    • M.L. DePamphilis Transcriptional elements as components of eukaryotic origins of DNA replication Cell 52 1988 635 638
    • (1988) Cell , vol.52 , pp. 635-638
    • Depamphilis, M.L.1
  • 5
    • 0031278994 scopus 로고    scopus 로고
    • The search for origins of replication
    • M.L. DePamphilis The search for origins of replication Methods 13 1997 211 219
    • (1997) Methods , vol.13 , pp. 211-219
    • Depamphilis, M.L.1
  • 6
    • 0026673593 scopus 로고
    • Initiation of DNA replication in the dihydrofolate reductase locus is confined to the early S period in CHO cells synchronized with the plant amino acid mimosine
    • P.A. Dijkwel, and J.L. Hamlin Initiation of DNA replication in the dihydrofolate reductase locus is confined to the early S period in CHO cells synchronized with the plant amino acid mimosine Mol. Cell. Biol. 12 1992 3715 3722
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 3715-3722
    • Dijkwel, P.A.1    Hamlin, J.L.2
  • 7
    • 0029007149 scopus 로고
    • The Chinese hamster dihydrofolate reductase origin consists of multiple potential nascent-strand start sites
    • P.A. Dijkwel, and J.L. Hamlin The Chinese hamster dihydrofolate reductase origin consists of multiple potential nascent-strand start sites Mol. Cell. Biol. 15 1995 3023 3031
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 3023-3031
    • Dijkwel, P.A.1    Hamlin, J.L.2
  • 8
    • 0025916653 scopus 로고
    • Mapping of replication initiation sites in mammalian genomes by two-dimensional gel analysis: Stabilization and enrichment of replication intermediates by isolation on the nuclear matrix
    • P.A. Dijkwel, J.P. Vaughn, and J.L. Hamlin Mapping of replication initiation sites in mammalian genomes by two-dimensional gel analysis: stabilization and enrichment of replication intermediates by isolation on the nuclear matrix Mol. Cell. Biol. 11 1991 3850 3859
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 3850-3859
    • Dijkwel, P.A.1    Vaughn, J.P.2    Hamlin, J.L.3
  • 9
    • 0028556685 scopus 로고
    • Replication initiation sites are distributed widely in the amplified CHO dihydrofolate reductase domain
    • P.A. Dijkwel, J.P. Vaughn, and J.L. Hamlin Replication initiation sites are distributed widely in the amplified CHO dihydrofolate reductase domain Nucleic Acids Res. 22 1994 4989 4996
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4989-4996
    • Dijkwel, P.A.1    Vaughn, J.P.2    Hamlin, J.L.3
  • 10
  • 11
    • 0036232401 scopus 로고    scopus 로고
    • Initiation sites are distributed at frequent intervals in the Chinese hamster dihydrofolate reductase origin of replication but are used with very different efficiencies
    • P.A. Dijkwel, S. Wang, and J.L. Hamlin Initiation sites are distributed at frequent intervals in the Chinese hamster dihydrofolate reductase origin of replication but are used with very different efficiencies Mol. Cell. Biol. 22 2002 3053 3065
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 3053-3065
    • Dijkwel, P.A.1    Wang, S.2    Hamlin, J.L.3
  • 13
    • 0035812742 scopus 로고    scopus 로고
    • Making sense of eukaryotic DNA replication origins
    • D.M. Gilbert Making sense of eukaryotic DNA replication origins Science 294 2001 96 100
    • (2001) Science , vol.294 , pp. 96-100
    • Gilbert, D.M.1
  • 14
    • 0036591890 scopus 로고    scopus 로고
    • Replication timing and transcriptional control: Beyond cause and effect
    • D.M. Gilbert Replication timing and transcriptional control: beyond cause and effect Curr. Opin. Cell Biol. 14 2002 377 383
    • (2002) Curr. Opin. Cell Biol. , vol.14 , pp. 377-383
    • Gilbert, D.M.1
  • 15
    • 5044226154 scopus 로고    scopus 로고
    • In search of the holy replicator
    • D.M. Gilbert In search of the holy replicator Nat. Rev. Mol. Cell Biol. 5 2004 848 855
    • (2004) Nat. Rev. Mol. Cell Biol. , vol.5 , pp. 848-855
    • Gilbert, D.M.1
  • 16
    • 0028353898 scopus 로고
    • Transcription inhibits the replication of autonomously replicating plasmids in human cells
    • S.B. Haase, S.S. Heinzel, and M.P. Calos Transcription inhibits the replication of autonomously replicating plasmids in human cells Mol. Cell. Biol. 14 1994 2516 2524
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 2516-2524
    • Haase, S.B.1    Heinzel, S.S.2    Calos, M.P.3
  • 17
    • 0028954246 scopus 로고
    • On the nature of replication origins in higher eukaryotes
    • J.L. Hamlin, and P.A. Dijkwel On the nature of replication origins in higher eukaryotes Curr. Opinion. Gen. Devel. 5 1995 153 161
    • (1995) Curr. Opinion. Gen. Devel. , vol.5 , pp. 153-161
    • Hamlin, J.L.1    Dijkwel, P.A.2
  • 18
    • 0026871077 scopus 로고
    • Transcription factors and the control of DNA replication
    • N.H. Heintz Transcription factors and the control of DNA replication Curr. Opin. Cell Biol. 4 1992 459 467
    • (1992) Curr. Opin. Cell Biol. , vol.4 , pp. 459-467
    • Heintz, N.H.1
  • 19
    • 0026016255 scopus 로고
    • Autonomous DNA replication in human cells is affected by the size and the source of the DNA
    • S.S. Heinzel, P.J. Krysan, C.T. Tran, and M.P. Calos Autonomous DNA replication in human cells is affected by the size and the source of the DNA Mol. Cell. Biol. 11 1991 2263 2272
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 2263-2272
    • Heinzel, S.S.1    Krysan, P.J.2    Tran, C.T.3    Calos, M.P.4
  • 20
    • 0012824651 scopus 로고
    • Sur la Regulation de la synthese du DNA chez les bacteriers: L'hypothese du replicon
    • F. Jacob, and S. Brenner Sur la Regulation de la synthese du DNA chez les bacteriers: l'hypothese du replicon CR Acad. Sci. 246 1963 298 300
    • (1963) CR Acad. Sci. , vol.246 , pp. 298-300
    • Jacob, F.1    Brenner, S.2
  • 22
    • 0032245260 scopus 로고    scopus 로고
    • Distal sequences, but not ori-beta/OBR-1, are essential for initiation of DNA replication in the Chinese hamster DHFR origin
    • R.F. Kalejta, X. Li, L.D. Mesner, P.A. Dijkwel, H.B. Lin, and J.L. Hamlin Distal sequences, but not ori-beta/OBR-1, are essential for initiation of DNA replication in the Chinese hamster DHFR origin Mol. Cell 2 1998 797 806
    • (1998) Mol. Cell , vol.2 , pp. 797-806
    • Kalejta, R.F.1    Li, X.2    Mesner, L.D.3    Dijkwel, P.A.4    Lin, H.B.5    Hamlin, J.L.6
  • 23
    • 0031815995 scopus 로고    scopus 로고
    • Identification of primary initiation sites for DNA replication in the hamster dihydrofolate reductase gene initiation zone
    • T. Kobayashi, T. Rein, and M.L. DePamphilis Identification of primary initiation sites for DNA replication in the hamster dihydrofolate reductase gene initiation zone Mol. Cell. Biol. 18 1998 3266 3277
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 3266-3277
    • Kobayashi, T.1    Rein, T.2    Depamphilis, M.L.3
  • 25
    • 0024564516 scopus 로고
    • Isolation of human sequences that replicate autonomously in human cells
    • P.J. Krysan, S.B. Haase, and M.P. Calos Isolation of human sequences that replicate autonomously in human cells Mol. Cell. Biol. 9 1989 1026 1033
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 1026-1033
    • Krysan, P.J.1    Haase, S.B.2    Calos, M.P.3
  • 26
    • 0027486027 scopus 로고
    • Initiation and termination of DNA replication in human rRNA genes
    • R.D. Little, T.H. Platt, and C.L. Schildkraut Initiation and termination of DNA replication in human rRNA genes Mol. Cell. Biol. 13 1993 6600 6613
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 6600-6613
    • Little, R.D.1    Platt, T.H.2    Schildkraut, C.L.3
  • 27
    • 0037371705 scopus 로고    scopus 로고
    • Multiple functional elements comprise a mammalian chromosomal replicator
    • G. Liu, M. Malott, and M. Leffak Multiple functional elements comprise a mammalian chromosomal replicator Mol. Cell. Biol. 23 2003 1832 1842
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 1832-1842
    • Liu, G.1    Malott, M.2    Leffak, M.3
  • 28
    • 0025218485 scopus 로고
    • Multiple origins of replication in the DHFR amplicons of a methotrexate-resistant Chinese hamster cell line
    • C. Ma, T.-H. Leu, and J.L. Hamlin Multiple origins of replication in the DHFR amplicons of a methotrexate-resistant Chinese hamster cell line Mol. Cell. Biol. 10 1990 1338 1346
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 1338-1346
    • Ma, C.1    Leu, T.-H.2    Hamlin, J.L.3
  • 29
    • 23444434202 scopus 로고    scopus 로고
    • A genomic view of eukaryotic DNA replication
    • D.M. MacAlpine, and S.P. Bell A genomic view of eukaryotic DNA replication Chromosome Res. 13 2005 309 326
    • (2005) Chromosome Res. , vol.13 , pp. 309-326
    • MacAlpine, D.M.1    Bell, S.P.2
  • 30
    • 10644297436 scopus 로고    scopus 로고
    • Coordination of replication and transcription along a Drosophila chromosome
    • D.M. MacAlpine, H.K. Rodriguez, and S.P. Bell Coordination of replication and transcription along a Drosophila chromosome Genes Dev. 18 2004 3094 3105
    • (2004) Genes Dev. , vol.18 , pp. 3094-3105
    • MacAlpine, D.M.1    Rodriguez, H.K.2    Bell, S.P.3
  • 31
    • 0025253541 scopus 로고
    • Autonomous replication of a DNA fragment containing the chromosomal replication origin of the human c-myc gene
    • C. McWhinney, and M. Leffak Autonomous replication of a DNA fragment containing the chromosomal replication origin of the human c-myc gene Nucleic Acids Res. 18 1990 1233 1242
    • (1990) Nucleic Acids Res. , vol.18 , pp. 1233-1242
    • McWhinney, C.1    Leffak, M.2
  • 32
    • 18244367662 scopus 로고    scopus 로고
    • Specific signals at the 3′ end of the DHFR gene define one boundary of the downstream origin of replication
    • L.D. Mesner, and J.L. Hamlin Specific signals at the 3′ end of the DHFR gene define one boundary of the downstream origin of replication Genes Dev. 19 2005 1053 1066
    • (2005) Genes Dev. , vol.19 , pp. 1053-1066
    • Mesner, L.D.1    Hamlin, J.L.2
  • 33
    • 0037305924 scopus 로고    scopus 로고
    • The dihydrofolate reductase origin of replication does not contain any nonredundant genetic elements required for origin activity
    • L.D. Mesner, X. Li, P.A. Dijkwel, and J.L. Hamlin The dihydrofolate reductase origin of replication does not contain any nonredundant genetic elements required for origin activity Mol. Cell. Biol. 23 2003 804 814
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 804-814
    • Mesner, L.D.1    Li, X.2    Dijkwel, P.A.3    Hamlin, J.L.4
  • 34
    • 0021675784 scopus 로고
    • Organization of the higher-order chromatin loop: Specific DNA attachment sites on nuclear scaffold
    • J. Mirkovitch, M.E. Mirault, and U.K. Laemmli Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold Cell 39 1984 223 232
    • (1984) Cell , vol.39 , pp. 223-232
    • Mirkovitch, J.1    Mirault, M.E.2    Laemmli, U.K.3
  • 36
    • 0029789679 scopus 로고    scopus 로고
    • High-resolution mapping of the origin of DNA replication in the hamster dihydrofolate reductase gene domain by competitive PCR
    • C. Pelizon, S. Diviacco, A. Falaschi, and M. Giacca High-resolution mapping of the origin of DNA replication in the hamster dihydrofolate reductase gene domain by competitive PCR Mol. Cell. Biol. 16 1996 5358 5364
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 5358-5364
    • Pelizon, C.1    Diviacco, S.2    Falaschi, A.3    Giacca, M.4
  • 39
    • 1542373676 scopus 로고    scopus 로고
    • The promoter of the Chinese hamster ovary dihydrofolate reductase gene regulates the activity of the local origin and helps define its boundaries
    • S. Saha, Y. Shan, L.D. Mesner, and J.L. Hamlin The promoter of the Chinese hamster ovary dihydrofolate reductase gene regulates the activity of the local origin and helps define its boundaries Genes Dev. 18 2004 397 410
    • (2004) Genes Dev. , vol.18 , pp. 397-410
    • Saha, S.1    Shan, Y.2    Mesner, L.D.3    Hamlin, J.L.4
  • 40
    • 0036842221 scopus 로고    scopus 로고
    • Genome-wide DNA replication profile for Drosophila melanogaster: A link between transcription and replication timing
    • D. Schubeler, D. Scalzo, C. Kooperberg, B. van Steensel, J. Delrow, and M. Groudine Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing Nat. Genet. 32 2002 438 442
    • (2002) Nat. Genet. , vol.32 , pp. 438-442
    • Schubeler, D.1    Scalzo, D.2    Kooperberg, C.3    Van Steensel, B.4    Delrow, J.5    Groudine, M.6
  • 41
    • 0024009977 scopus 로고
    • Transcription interferes with elements important for chromosome maintenance in Saccharomyces cerevisiae
    • M. Snyder, R.J. Sapolsky, and R.W. Davis Transcription interferes with elements important for chromosome maintenance in Saccharomyces cerevisiae Mol. Cell. Biol. 8 1988 2184 2194
    • (1988) Mol. Cell. Biol. , vol.8 , pp. 2184-2194
    • Snyder, M.1    Sapolsky, R.J.2    Davis, R.W.3
  • 42
    • 0018671664 scopus 로고
    • Isolation and characterisation of a yeast chromosomal replicator
    • D.T. Stinchcomb, K. Struhl, and R.W. Davis Isolation and characterisation of a yeast chromosomal replicator Nature 282 1979 39 43
    • (1979) Nature , vol.282 , pp. 39-43
    • Stinchcomb, D.T.1    Struhl, K.2    Davis, R.W.3
  • 44
    • 0033472810 scopus 로고    scopus 로고
    • Replication origins of mammalian chromosomes: The happy few
    • V. Todorovic, A. Falaschi, and M. Giacca Replication origins of mammalian chromosomes: the happy few Front. Biosci. 4 1999 859 868
    • (1999) Front. Biosci. , vol.4 , pp. 859-868
    • Todorovic, V.1    Falaschi, A.2    Giacca, M.3
  • 46
    • 0025340970 scopus 로고
    • Replication initiates in a broad zone in the amplified CHO dihydrofolate reductase domain
    • J.P. Vaughn, P.A. Dijkwel, and J.L. Hamlin Replication initiates in a broad zone in the amplified CHO dihydrofolate reductase domain Cell 61 1990 1075 1087
    • (1990) Cell , vol.61 , pp. 1075-1087
    • Vaughn, J.P.1    Dijkwel, P.A.2    Hamlin, J.L.3
  • 51
    • 0035861492 scopus 로고    scopus 로고
    • Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: High- resolution mapping of replication origins
    • J.J. Wyrick, J.G. Aparicio, T. Chen, J.D. Barnett, E.G. Jennings, R.A. Young, S.P. Bell, and O.M. Aparicio Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high- resolution mapping of replication origins Science 294 2001 2357 2360
    • (2001) Science , vol.294 , pp. 2357-2360
    • Wyrick, J.J.1    Aparicio, J.G.2    Chen, T.3    Barnett, J.D.4    Jennings, E.G.5    Young, R.A.6    Bell, S.P.7    Aparicio, O.M.8
  • 52
    • 0036668464 scopus 로고    scopus 로고
    • Mapping of early firing origins on a replication profile of budding yeast
    • N. Yabuki, H. Terashima, and K. Kitada Mapping of early firing origins on a replication profile of budding yeast Genes Cells 7 2002 781 789
    • (2002) Genes Cells , vol.7 , pp. 781-789
    • Yabuki, N.1    Terashima, H.2    Kitada, K.3


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