Analyzing genomes with cumulative skew diagrams

Nucleic Acids Research

Volumn 26, Issue 10, 1998, Pages 2286-2290

  Grigoriev, Andrei ^a  

^a MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; GUANINE; MITOCHONDRIAL DNA; SINGLE STRANDED DNA;

ARTICLE; CHROMOSOME; DNA REPLICATION; DNA REPLICATION ORIGIN; ESCHERICHIA COLI; GENE REARRANGEMENT; GENOME; NONHUMAN; PRIORITY JOURNAL; VIRUS GENOME;

BACTERIA; BASE COMPOSITION; CHROMOSOMES, ARCHAEAL; CHROMOSOMES, BACTERIAL; DNA REPLICATION; DNA, ARCHAEAL; DNA, BACTERIAL; GENE REARRANGEMENT; GENOME; GENOME, BACTERIAL; METHANOBACTERIUM; METHANOCOCCUS;

ARCHAEA; BACTERIA (MICROORGANISMS); DNA VIRUSES; ESCHERICHIA COLI;

EID: 0032524384     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/26.10.2286     Document Type: Article

References (35)

1. Anderson, S., Bankier, A.T., Barrell, B.G., de Bruijn, M.H., Coulson, A.R., Drouin, J., Eperon, I.C., Nierlich, D.P., Roe, B.A., Sanger, F., et al. (1981) Nature 290, 456-465.
2. Goffeau, A., Aert, R., Agostini-Carbone, M. L., Ahmed, A., Aigle, M., Alberghina, L., Albermann, K., Albers, M., Aldea, M., Alexandraki, D., et al. (1997) Nature 387, 5-105.
3. Kunst, F., Ogasawara, N., Moszer, I., Albertini, A.M., Alloni, G., Azevedo, V., Bertero, M.G., Bessieres, P., Bolotin, A., Borchert, S., et al. (1997 Nature 390, 249-256.
4. Fraser, C.M., Casjens, S., Huang, W.M., Sutton, G.G., Clayton, R., Lathigra, R., White, O., Ketchum, K.A., Dodson, R., Hickey, E.K., et al. (1997) Nature 390, 580-586.
5. Blattner, F.R., Plunkett, G., Bloch, C.A., Perna, N.T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J.D., Rode, C.K., Mayhew, G.F., et al. (1997) Science 277, 1453-1474.
6. Fleischmann, R.D., Adams, M.D., White, O., Clayton, R.A., Kirkness, E.F., Kerlavage, A.R., Bult, C.J., Tomb, J.F., Dougherty, B.A, Merrick, J.M., et al. (1995) Science 269, 496-512.
7. Tomb, J.F., White, O., Kerlavage, A.R., Clayton, R.A., Sutton, G.G., Reischmann, R.D., Ketchum, K.A., Klenk, H.P., Gill, S., Dougherty, B.A., et al.. (1997) Nature 388, 539-547.
8. Fraser, C.M, Gocayne, J.D., White, O., Adams, M.D., Clayton, R.A., Fleischmann, R.D., Bult, C.J., Kerlavage, A.R., Sutton, G., Kelley, J.M., et al. (1995 Science 270, 397-403.
9. Himmelreich, R., Hilbert, H., Plagens, H., Pirkl, E., Li, B.C., Herrmann, R. (1996) Nucleic Acids Res. 24, 4420-4449.
10. Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., Miyajima, N., Hirosawa, M., Sugiura, M., Sasamoto, S., et al.. (1996) DNA Res. 3, 109-136.
11. Klenk, H.P., Clayton, R.A., Tomb, J.F., White, O., Nelson, K.E., Ketchum, K.A., Dodson, R.J., Gwinn, M., Hickey, E.K., Peterson, J.D., et al. (1997) Nature 390, 364-370.
12. Bull, C.J., White, O., Olsen, G.J., Zhou, L., Fleischmann, R.D., Sutton, G.G., Blake, J.A., Fitzgerald, L.M., Clayton, R.A., Gocayne, J.D., Kerlavage, A.R., et al. (1996) Science 273, 1058-1073.
13. Smith, D. R., Doucette-Stamm, L.A., Deloughery, C., Lee, H., Dubois, J., Aldredge, T., Bashirzadeh, R., Blakely, D., Cook, R., Gilbert, K., et al.. (1997) J. Bacteriol. 179, 7135-7155.
14. Wu, C.-I. and Maeda, N. (1987) Nature 327, 169-170.
15. Lobry, J.R. (1996) Mol. Biol. Evol. 13, 660-665.
16. Perna, N.T. and Kocher, T.D. (1995) J. Mol. Evol. 41, 353-358.
17. Griffiths, A.A. and Wake, R.G. (1997) J. Bacteriol. 179, 3358-3361.
18. Old, I.G., MacDougall, J., Saint Girons, I. and Davidson, B.E. (1992) FEMS Microbiol. Lett. 78, 245-250.
19. Ireton, K., Gunther, N.W. and Grossman, A.D. (1994) J. Bacteriol. 176, 5320-5329.
20. Li, J.J. and Kelly, T.J. (1984) Proc. Natl. Acad. Sci. USA 81, 6973-6977.
21. Schlunegger, B. and Stutz, E. (1984) Curr. Genet. 8, 629-634.
22. Davison, A.J., Telford, E.A., Watson, M.S., McBride, K. and Mautner, V. (1993) J. Mol. Biol. 234, 1308-1316.
23. Kornberg, A. and Baker, T.A. (1992) DNA Replication (2nd ed.) Freeman, and Co., New York.
24. Clayton, D.A. (1982) Cell 28, 693-705.
25. Newlon, C.S. and Theis, J.F. (1993) Curr. Opin. Genet. Dev. 3, 752-758.
26. Tanaka, M. and Ozawa, T. (1994) Genomics 22, 327-335.
27. Frederico, L.A., Kunkel, T.A. and Shaw, B.R. (1990) Biochemistry 29, 2532-2537.
28. Su, S.S., Lahue, R.S., Au, K.G. and Modrich, P. (1988) J. Biol. Chem. 263, 6829-6835.
29. Francino, M.P. and Ochman, H. (1997) Trends Genet. 13, 240-245.
30. Hinnebusch, B.J. and Bendich, A.J. (1997) J. Bacteriol. 179, 2228-2237.
31. Smith, H.O., Tomb, J.F., Dougherty, B.A., Fleischmann, R.D. and Venter, J.C. (1995) Science 269, 538-540.
32. Jiang, Q., Hiratsuka, K. and Taylor, D.E. (1996) Mol. Microbiol. 20, 833-842.
33. Hancock, R., Alm, R., Bina, J. and Trust, T. (1998) Nature Biotechnol. 16, 216-217.
34. Freeman, J.M., Plasterer, T.N., Smith, T.F. and Mohr, S.C. (1998) Science 279, 1827.
35. Lobry, J.R. (1996) Biochimie 78, 323-326.