RNA as a stable polymer to build controllable and defined nanostructures for material and biomedical applications

Nano Today

Volumn 10, Issue 5, 2015, Pages 631-655

  Li, Hui ^a   Lee, Taek ^a,b   Dziubla, Thomas ^c   Pi, Fengmei ^a   Guo, Sijin ^a,d   Xu, Jing ^e   Li, Chan ^e   Haque, Farzin ^a   Liang, Xing Jie ^e   Guo, Peixuan ^a  

^a UNIVERSITY OF KENTUCKY   (United States)

^b Sogang University   (South Korea)

^c UNIVERSITY OF KENTUCKY   (United States)

^d UNIVERSITY OF KENTUCKY   (United States)

^e NATIONAL CENTER FOR NANOSCIENCE AND TECHNOLOGY   (China)

Author keywords

Biopolymer; phi29 DNA packaging motor; pRNA; RNA nanostructure; RNA nanotechnology; RNA therapeutics

Indexed keywords

BIOPOLYMERS; FUNCTIONAL POLYMERS; MEDICAL APPLICATIONS; NANOSTRUCTURES; NANOTECHNOLOGY; POLYMERS; RNA;

BIOLOGICAL FUNCTIONS; BIOMEDICAL APPLICATIONS; DNA-PACKAGING MOTOR; PHYSICAL AND CHEMICAL PROPERTIES; PRNA; RNA NANOTECHNOLOGIES; RNA THERAPEUTICS; TECHNOLOGICAL APPLICATIONS;

NUCLEIC ACIDS;

DOXORUBICIN; DRUG CARRIER; HYDROXYL GROUP; LOCKED NUCLEIC ACID; METHYLPHOSPHONIC ACID; NANOMATERIAL; NANOPARTICLE; PHOSPHONOACETIC ACID; PHOSPHOROTHIOIC ACID; POLYMER; RNA; SINGLE STRANDED DNA; SMALL INTERFERING RNA;

BIOMEDICINE; CHEMICAL MODIFICATION; CONTROLLED DRUG RELEASE; DNA RNA HYBRIDIZATION; NANOPHARMACEUTICS; NANOTECHNOLOGY; NONHUMAN; POLYMERIZATION; REVIEW; RNA STABILITY; RNA STRUCTURE; THERMODYNAMICS; TISSUE ENGINEERING;

EID: 84948994868     PISSN: 17480132     EISSN: 1878044X     Source Type: Journal    
DOI: 10.1016/j.nantod.2015.09.003     Document Type: Review

References (284)

1. C.E. Carraher Carraher's Polymer Chemistry ninth ed. 2013 CRC Press FL
2. C. Tsenoglou Macromolecules 24 1991 1762 1767
3. P. Cassagnau, J.P. Montfort, G. Marin, and P. Monge Rheol. Acta 32 1993 156 167
4. N. Badi, and J.F. Lutz Chem. Soc. Rev. 38 2009 3383 3390
5. J.M. Lehn Polym. Int. 51 2002 825 839
6. D.A. Tomalia Prog. Polym. Sci. 30 2005 294 324
7. J.F. Lutz Polym. Chem. 1 2010 55 62
8. E. Westhof, B. Masquida, and L. Jaeger Fold Des. 1 1996 R78 R88
9. F.J. Isaacs Nat. Chem. Biol. 8 2012 413 415
10. L. Jaeger, and A. Chworos Curr. Opin. Struct. Biol. 16 2006 531 543
11. N.B. Leontis, A. Lescoute, and E. Westhof Curr. Opin. Struct. Biol. 16 2006 279 287
12. A. Lescoute, and E. Westhof Nucleic Acids Res. 34 2006 6587 6604
13. A. Lescoute, and E. Westhof RNA 12 2006 83 93
14. W.W. Grabow, and L. Jaeger Acc. Chem. Res. 47 2014 1871 1880
15. G. Widawski, M. Rawiso, and B. Francois Nature 369 1994 387 389
16. J. Roovers, and P.M. Toporowski Macromolecules 16 1983 843 849
17. S.G. Gaynor, S. Edelman, and K. Matyjaszewski Macromolecules 29 1996 1079 1081
18. K. Inoue Prog. Polym. Sci. 25 2000 453 571
19. C.C. Lee, J.A. MacKay, J.M. Frechet, and F.C. Szoka Nat. Biotechnol. 23 2005 1517 1526
20. K.L. Wooley J. Polym. Sci., A: Polym. Chem. 38 2000 1397 1407
21. A.D. Schluter, M. Loffler, and V. Enkelmann Nature 368 1994 831 834
22. J.M.J. Frechet Science 263 1994 1710 1715
23. L.Y. Qiu, and Y.H. Bae Pharm. Res. 23 2006 1 30
24. G. Varani, and W.H. McClain EMBO Rep. 1 2000 18 23
25. U. Nagaswamy, M. Larios-Sanz, J. Hury, S. Collins, Z. Zhang, Q. Zhao, and G.E. Fox Nucleic Acids Res. 30 2002 395 397
26. S. Lemieux, and F. Major Nucleic Acids Res. 30 2002 4250 4263
27. N.B. Leontis, J. Stombaugh, and E. Westhof Nucleic Acids Res. 30 2002 3497 3531
28. H. Yang, F. Jossinet, N. Leontis, L. Chen, J. Westbrook, H. Berman, and E. Westhof Nucleic Acids Res. 31 2003 3450 3460
29. Y. Xin, C. Laing, N.B. Leontis, and T. Schlick RNA 14 2008 2465 2477
30. C. Laing, S. Jung, N. Kim, S. Elmetwaly, M. Zahran, and T. Schlick PLoS ONE 8 2013 e71947
31. C. Laing, D. Wen, J.T. Wang, and T. Schlick Nucleic Acids Res. 40 2012 487 498
32. N. Salim, R. Lamichhane, R. Zhao, T. Banerjee, J. Philip, D. Rueda, and A.L. Feig Biophys. J. 102 2012 1097 1107
33. R.G. Gilbert, M. Hess, A.D. Jenkins, R.G. Jones, R. Kratochvil, and R.F.T. Stepto Pure Appl. Chem. 81 2009 779
34. M. Rogosic, H.J. Mencer, and Z. Gomzi Eur. Polym. J. 32 1996 1337 1344
35. J.M. Margolis Engineering Thermoplastics: Properties and Applications 1985 Marcel Dekker, Inc New York, NY
36. E.F. Khisamutdinov, D.L. Jasinski, and P. Guo ACS Nano 8 2014 4771 4781
37. J.C. Middleton, and A.J. Tipton Biomaterials 21 2000 2335 2346
38. S. Ramakrishna, J. Mayer, E. Wintermantel, and K.W. Leong Compos. Sci. Technol. 61 2001 1189 1224
39. Y. Ikada Biomaterials 15 1994 725 736
40. J. Jagur-Grodzinski Polym. Adv. Technol. 17 2006 395 418
41. F. Hussain, M. Hojjati, M. Okamoto, and R.E. Gorga J. Compos. Mater. 40 2006 1511 1575
42. Y.J. Liu, H.B. Lv, X. Lan, J.S. Leng, and S.Y. Du Compos. Sci. Technol. 69 2009 2064 2068
43. M. Shahinpoor, and K.J. Kim Smart Mater. Struct. 14 2005 197 214
44. W.U. Huynh, J.J. Dittmer, and A.P. Alivisatos Science 295 2002 2425 2427
45. G. Dennler, M.C. Scharber, and C.J. Brabec Adv. Mater. 21 2009 1323 1338
46. K. Bock Proc. IEEE 93 2005 1400 1406
47. J.J. Wang, L. Sun, K. Mpoukouvalas, K. Lienkamp, I. Lieberwirth, B. Fassbender, E. Bonaccurso, G. Brunklaus, A. Muehlebach, T. Beierlein, R. Tilch, H.J. Butt, and G. Wegner Adv. Mater. 21 2009 1137 1141
48. I.D.W. Samuel Philos. Trans. R. Soc. London, Ser. A - Math. Phys. Eng. Sci. 358 2000 193 210
49. A. Dodabalapur Mater. Today 9 2006 24 30
50. W. Clemens, I. Fix, J. Ficker, A. Knobloch, and A. Ullmann J. Mater. Res. 19 2004 1963 1973
51. D.M. Lilley Trends Biochem. Sci. 28 2003 495 501
52. N. Sugimoto, S. Nakano, M. Katoh, A. Matsumura, H. Nakamuta, T. Ohmichi, M. Yoneyama, and M. Sasaki Biochemistry 34 1995 11211 11216
53. R. Schroeder, A. Barta, and K. Semrad Nat. Rev. Mol. Cell Biol. 5 2004 908 919
54. H. Zhang, J.A. Endrizzi, Y. Shu, F. Haque, C. Sauter, L.S. Shlyakhtenko, Y. Lyubchenko, P. Guo, and Y.I. Chi RNA 19 2013 1226 1237
55. R. Parker, and H.W. Song Nat. Struct. Mol. Biol. 11 2004 121 127
56. C.A. Beelman, and R. Parker Cell 81 1995 179 183
57. M. Ha, and V.N. Kim Nat. Rev. Mol. Cell. Biol. 15 2014 509 524
58. J. Krol, I. Loedige, and W. Filipowicz Nat Rev. Genet. 11 2010 597 610
59. E. Abernathy, and B. Glaunsinger Virology 479-480 2015 600 608
60. M.A. Carmell, and G.J. Hannon Nat. Struct. Mol. Biol. 11 2004 214 218
61. D. Yang, F. Buchholz, Z. Huang, A. Goga, C.Y. Chen, F.M. Brodsky, and J.M. Bishop Proc. Natl. Acad. Sci. U.S.A. 99 2002 9942 9947
62. W.M. Li, T. Barnes, and C.H. Lee FEBS J. 277 2010 627 641
63. Y. Zuo, and M.P. Deutscher Nucleic Acids Res. 29 2001 1017 1026
64. W.A. Pieken, D.B. Olsen, F. Benseler, H. Aurup, and F. Eckstein Science 253 1991 314 317
65. A.M. Kawasaki, M.D. Casper, S.M. Freier, E.A. Lesnik, M.C. Zounes, L.L. Cummins, C. Gonzalez, and P.D. Cook J. Med. Chem. 36 1993 831 841
66. J. Liu, S. Guo, M. Cinier, L.S. Shlyakhtenko, Y. Shu, C. Chen, G. Shen, and P. Guo ACS Nano 5 2011 237 246
67. J. Hong, Y. Huang, J. Li, F. Yi, J. Zheng, H. Huang, N. Wei, Y. Shan, M. An, and H. Zhang FASEB J. 24 2010 4844 4855
68. J. Hu, G. Zhang, and S. Liu Chem. Soc. Rev. 41 2012 5933 5949
69. Q. Hu, P.S. Katti, and Z. Gu Nanoscale 6 2014 12273 12286
70. C. Zhang, D. Pan, K. Luo, W. She, C. Guo, Y. Yang, and Z. Gu Adv. Healthcare Mater. 3 2014 1299 1308
71. A.J. Harnoy, I. Rosenbaum, E. Tirosh, Y. Ebenstein, R. Shaharabani, R. Beck, and R.J. Amir J. Am. Chem. Soc. 136 2014 7531 7534
72. D.G. Anderson, A. Akinc, N. Hossain, and R. Langer Mol. Ther. 11 2005 426 434
73. F. Haque, D. Shu, Y. Shu, L. Shlyakhtenko, P. Rychahou, M. Evers, and P. Guo Nano Today 7 2012 245 257
74. Y. Shu, F. Pi, A. Sharma, M. Rajabi, F. Haque, D. Shu, M. Leggas, B.M. Evers, and P. Guo Adv. Drug Delivery Rev. 66C 2014 74 89
75. S.E. Butcher, and A.M. Pyle Acc. Chem. Res. 44 2011 1302 1311
76. C. Laing, and T. Schlick J. Mol. Biol. 390 2009 547 559
77. D.M. Lilley Q. Rev. Biophys. 33 2000 109 159
78. D. Klostermeier, and D.P. Millar Biochemistry 39 2000 12970 12978
79. C. Altona J. Mol. Biol. 263 1996 568 581
80. D.R. Duckett, A.I. Murchie, and D.M. Lilley Cell 83 1995 1027 1036
81. A. Lamiable, D. Barth, A. Denise, F. Quessette, S. Vial, and E. Westhof Comput. Biol. Chem. 37 2012 1 5
82. I. Besseova, K. Reblova, N.B. Leontis, and J. Sponer Nucleic Acids Res. 38 2010 6247 6264
83. D.H. Mathews, and D.H. Turner Biochemistry 41 2002 869 880
84. J.M. Diamond, D.H. Turner, and D.H. Mathews Biochemistry 40 2001 6971 6981
85. J.A. Abels, F. Moreno-Herrero, T. van der Heijden, C.F. Dekker, and N.H. Dekker Biophys J. 88 2005 2737 2744
86. C. Bustamante, S.B. Smith, J. Liphardt, and D. Smith Curr. Opin. Struct. Biol. 10 2000 279 285
87. J. Lipfert, G.M. Skinner, J.M. Keegstra, T. Hensgens, T. Jager, D. Dulin, M. Kober, Z. Yu, S.P. Donkers, F.C. Chou, R. Das, and N.H. Dekker Proc. Natl. Acad. Sci. U.S.A. 111 2014 15408 15413
88. H.C. Chiu, K. Koh, M. Evich, and A. Lesiak Nanoscale 6 2014 10009 10017
89. H.M. Al-Hashimi, S.W. Pitt, A. Majumdar, W.J. Xu, and D.J. Patel J. Mol. Biol. 329 2003 867 873
90. A. Mustoe, C. Brooks, and H.M. Al-Hashimi Ann. Rev. Biochem. 83 2014 441 466
91. H. Chen, S.P. Meisburger, S.A. Pabit, J.L. Sutton, W.W. Webb, and L. Pollack Proc. Natl. Acad. Sci. U.S.A. 109 2012 799 804
92. E. Khisamutdinov, H. Li, D. Jasinski, J. Chen, J. Fu, and P. Guo Nucleic Acids Res. 42 2014 9996 10004
93. S.M. Dibrov, J. McLean, J. Parsons, and T. Hermann Proc. Natl. Acad. Sci. U.S.A. 108 2011 6405 6408
94. C. Schwartz, G.M. De Donatis, H. Zhang, H. Fang, and P. Guo Virology 443 2013 28 39
95. C. Schwartz, G.M. De Donatis, H. Fang, and P. Guo Virology 443 2013 20 27
96. Z. Zhao, E. Khisamutdinov, C. Schwartz, and P. Guo ACS Nano 7 2013 4082 4092
97. P. Guo, C. Schwartz, J. Haak, and Z. Zhao Virology 446 2013 133 143
98. P. Guo Biophys. J. 106 2014 1837 1838
99. G. De-Donatis, Z. Zhao, S. Wang, P.L. Huang, C. Schwartz, V.O. Tsodikov, H. Zhang, F. Haque, and P. Guo Cell Biosci. 4 2014 30
100. P. Guo, Z. Zhao, J. Haak, S. Wang, D. Wu, B. Meng, and T. Weitao Biotechnol. Adv. 32 2014 853 872
101. S. Wang, F. Haque, P.G. Rychahou, B.M. Evers, and P. Guo ACS Nano 7 2013 9814 9822
102. D. Shu, F. Pi, C. Wang, P. Zhang, and P. Guo Nanomedicine 10 2015 1881 1897
103. Y. Mat-Arip, K. Garver, C. Chen, S. Sheng, Z. Shao, and P. Guo J. Biol. Chem. 276 2001 32575 32584
104. M. Trottier, Y. Mat-Arip, C. Zhang, C. Chen, S. Sheng, Z. Shao, and P. Guo RNA 6 2000 1257 1266
105. C. Chen, S. Sheng, Z. Shao, and P. Guo J. Biol. Chem. 275 23 2000 17510 17516
106. D. Shu, L. Huang, S. Hoeprich, and P. Guo J. Nanosci. Nanotechnol. 3 2003 295 302
107. C. Chen, C. Zhang, and P. Guo RNA 5 1999 805 818
108. S. Guo, N. Tschammer, S. Mohammed, and P. Guo Hum. Gene Ther. 16 2005 1097 1109
109. Y. Shu, M. Cinier, D. Shu, and P. Guo Methods 54 2011 204 214
110. P. Guo, C. Zhang, C. Chen, M. Trottier, and K. Garver Mol. Cell 2 1998 149 155
111. A. Khaled, S. Guo, F. Li, and P. Guo Nano Lett. 5 2005 1797 1808
112. D. Shu, W.D. Moll, Z. Deng, C. Mao, and P. Guo Nano Lett. 4 2004 1717 1723
113. Y. Shu, F. Haque, D. Shu, W. Li, Z. Zhu, M. Kotb, Y. Lyubchenko, and P. Guo RNA 19 2013 766 777
114. Y.G. Yingling, and B.A. Shapiro Nano Lett. 7 2007 2328 2334
115. W.W. Grabow, P. Zakrevsky, K.A. Afonin, A. Chworos, B.A. Shapiro, and L. Jaeger Nano Lett. 11 2011 878 887
116. A. Chworos, I. Severcan, A.Y. Koyfman, P. Weinkam, E. Oroudjev, H.G. Hansma, and L. Jaeger Science 306 2004 2068 2072
117. I. Severcan, C.V.E.C.A. Geary, and L. Jaeger Nano Lett. 9 2009 1270 1277
118. I. Severcan, C. Geary, A. Chworos, N. Voss, E. Jacovetty, and L. Jaeger Nat. Chem. 2 2010 772 779
119. L. Jaeger, and N.B. Leontis Angew. Chem Int. Ed. Engl. 39 2000 2521 2524
120. L. Nasalean, S. Baudrey, N.B. Leontis, and L. Jaeger Nucleic Acids Res. 34 2006 1381 1392
121. C. Hao, X. Li, C. Tian, W. Jiang, G. Wang, and C. Mao Nat. Commun. 5 2014 3890
122. P. Guo, S. Erickson, and D. Anderson Science 236 1987 690 694
123. D. Shu, Y. Shu, F. Haque, S. Abdelmawla, and P. Guo Nat. Nanotechnol. 6 2011 658 667
124. Y. Shu, D. Shu, F. Haque, and P. Guo Nat. Protoc. 8 2013 1635 1659
125. D. Jasinski, E.F. Khisamutdinov, Y.L. Lyubchenko, and P. Guo ACS Nano 8 2014 7620 7629
126. D. Shu, L. Zhang, E. Khisamutdinov, and P. Guo Nucleic Acids Res. 42 2013 e10
127. H. Ohno, T. Kobayashi, R. Kabata, K. Endo, T. Iwasa, S.H. Yoshimura, K. Takeyasu, T. Inoue, and H. Saito Nat. Nanotechnol. 6 2011 116 120
128. T. Moore, Y. Zhang, M.O. Fenley, and H. Li Structure 12 2004 807 818
129. E. Osada, Y. Suzuki, K. Hidaka, H. Ohno, H. Sugiyama, M. Endo, and H. Saito ACS Nano 8 2014 8130 8140
130. P.W.K. Rothemund Nature 440 2006 297 302
131. F.A. Aldaye, A.L. Palmer, and H.F. Sleiman Science 321 2008 1795 1799
132. N.C. Seeman Annu. Rev. Biochem. 79 2010 65 87
133. F. Zhang, J. Nangreave, Y. Liu, and H. Yan J. Am. Chem. Soc. 136 2014 11198 11211
134. M.R. Jones, N.C. Seeman, and C.A. Mirkin Science 347 2015 1260901
135. Y.R. Yang, Y. Liu, and H. Yan Bioconjug. Chem. 26 2015 1381 1395
136. C. Geary, P.W. Rothemund, and E.S. Andersen Science 345 2014 799 804
137. C. Lorenz, N. Piganeau, and R. Schroeder Nucleic Acids Res. 34 2006 334 342
138. N. Leulliot, V. Baumruk, M. Abdelkafi, P.Y. Turpin, A. Namane, C. Gouyette, T. Huynh-Dinh, and M. Ghomi Nucleic Acids Res. 27 1999 1398 1404
139. M. Endo, Y. Takeuchi, T. Emura, K. Hidaka, and H. Sugiyama Chem.-Eur. J. 20 2014 15330 15333
140. K.A. Afonin, M. Viard, A.N. Martins, S.J. Lockett, A.E. Maciag, E.O. Freed, E. Heldman, L. Jaeger, R. Blumenthal, and B.A. Shapiro Nat. Nanotechnol. 8 2013 296 304
141. K.A. Afonin, R. Desai, M. Viard, M.L. Kireeva, E. Bindewald, C.L. Case, A.E. Maciag, W.K. Kasprzak, T. Kim, A. Sappe, M. Stepler, V.N. Kewalramani, M. Kashlev, R. Blumenthal, and B.A. Shapiro Nucleic Acids Res. 42 2014 2085 2097
142. K.A. Afonin, E. Bindewald, M. Kireeva, and B.A. Shapiro Methods Enzymol. 553 2015 313 334
143. K.A. Afonin, W.K. Kasprzak, E. Bindewald, M. Kireeva, M. Viard, M. Kashlev, and B.A. Shapiro Acc. Chem. Res. 47 2014 1731 1741
144. K.A. Afonin, E. Bindewald, A.J. Yaghoubian, N. Voss, E. Jacovetty, B.A. Shapiro, and L. Jaeger Nat. Nanotechnol. 5 2010 676 682
145. K.A. Afonin, W.W. Grabow, F.M. Walker, E. Bindewald, M.A. Dobrovolskaia, B.A. Shapiro, and L. Jaeger Nat. Protoc. 6 2011 2022 2034
146. K.A. Afonin, M. Viard, A.Y. Koyfman, A.N. Martins, W.K. Kasprzak, M. Panigaj, R. Desai, A. Santhanam, W.W. Grabow, L. Jaeger, E. Heldman, J. Reiser, W. Chiu, E.O. Freed, and B.A. Shapiro Nano Lett. 14 2014 5662 5671
147. J.B. Lee, J. Hong, D.K. Bonner, Z. Poon, and P.T. Hammond Nat. Mater. 11 2012 316 322
148. K.E. Shopsowitz, Y.H. Roh, Z.J. Deng, S.W. Morton, and P.T. Hammond Small 10 2014 1623 1633
149. S.M. Moghimi, P. Symonds, J.C. Murray, A.C. Hunter, G. Debska, and A. Szewczyk Mol. Ther. 11 2005 990 995
150. A. Beyerle, M. Irmler, J. Beckers, T. Kissel, and T. Stoeger Mol. Pharm. 7 2010 727 737
151. M. Ulbricht Polymer 47 2006 2217 2262
152. D. Han, Y. Park, H. Kim, and J.B. Lee Nat. Commun. 5 2014 4367
153. D.R. Corey J. Clin. Invest. 117 2007 3615 3622
154. M.A. Behlke Oligonucleotides 18 2008 305 319
155. J.B. Bramsen, and J. Kjems Front. Genet. 3 2012 154
156. L. Zangi, K.O. Lui, G.A. von, Q. Ma, W. Ebina, L.M. Ptaszek, D. Spater, H. Xu, M. Tabebordbar, R. Gorbatov, B. Sena, M. Nahrendorf, D.M. Briscoe, R.A. Li, A.J. Wagers, D.J. Rossi, W.T. Pu, and K.R. Chien Nat. Biotechnol. 31 2013 898 907
157. D.A. Braasch, Z. Paroo, A. Constantinescu, G. Ren, O.K. Oz, R.P. Mason, and D.R. Corey Bioorg. Med. Chem. Lett. 14 2004 1139 1143
158. A.H. Hall, J. Wan, E.E. Shaughnessy, S.B. Ramsay, and K.A. Alexander Nucleic Acids Res. 32 2004 5991 6000
159. A.M. Awad, M. Sobkowski, and H. Seliger Nucleosides Nucleotides Nucleic Acids 23 2004 777 787
160. M.A. Reynolds, R.I. Hogrefe, J.A. Jaeger, D.A. Schwartz, T.A. Riley, W.B. Marvin, W.J. Daily, M.M. Vaghefi, T.A. Beck, S.K. Knowles, R.E. Klem, and L.J. Arnold Jr. Nucleic Acids Res. 24 1996 4584 4591
161. M. Amarzguioui, T. Holen, E. Babaie, and H. Prydz Nucleic Acids Res. 31 2003 589 595
162. S. Choung, Y.J. Kim, S. Kim, H.O. Park, and Y.C. Choi Biochem. Biophys. Res. Commun. 342 2006 919 927
163. D.W. Binzel, E.F. Khisamutdinov, and P. Guo Biochemistry 53 2014 2221 2231
164. T.J. Lee, F. Haque, D. Shu, J.Y. Yoo, H. Li, R.A. Yokel, C. Horbinski, T.H. Kim, S.-H. Kim, I. Nakano, B. Kaur, C.M. Croce, and P. Guo Oncotarget 6 2015 14766 14776
165. P. Rychahou, F. Haque, Y. Shu, Y. Zaytseva, H.L. Weiss, E.Y. Lee, W. Mustain, J. Valentino, P. Guo, and B.M. Evers ACS Nano 9 2015 1108 1116
166. T.J. Lee, F. Haque, M. Vieweger, J.Y. Yoo, B. Kaur, P. Guo, and C.M. Croce Methods Mol. Biol. 1297 2015 137 152
167. D. Cui, C. Zhang, B. Liu, Y. Shu, T. Du, D. Shu, K. Wang, F. Dai, Y. Liu, C. Li, F. Pan, Y. Yang, J. Ni, H. Li, B. Brand-Saberi, and P. Guo Sci. Rep. 5 2015 10726
168. H. Li, P.G. Rychahou, Z. Cui, F. Pi, B.M. Evers, D. Shu, P. Guo, and W. Luo Nucleic Acid Ther. 25 2015 188 197
169. J.K. Watts, N. Choubdar, K. Sadalapure, F. Robert, A.S. Wahba, J. Pelletier, B.M. Pinto, and M.J. Damha Nucleic Acids Res. 35 2007 1441 1451
170. M. Petersen, and J. Wengel Trends Biotechnol. 21 2003 74 81
171. I.K. Astakhova, and J. Wengel Acc. Chem. Res. 47 2014 1768 1777
172. J. Elmen, H. Thonberg, K. Ljungberg, M. Frieden, M. Westergaard, Y. Xu, B. Wahren, Z. Liang, H. Orum, T. Koch, and C. Wahlestedt Nucleic Acids Res. 33 2005 439 447
173. D. Shu, H. Li, Y. Shu, G. Xiong, W.E. Carson, R. Xu, F. Haque, and P. Guo ACS Nano 2015 10.1021/acsnano.5b02471 (Accepted)
174. E.E. Swayze, A.M. Siwkowski, E.V. Wancewicz, M.T. Migawa, T.K. Wyrzykiewicz, G. Hung, B.P. Monia, and C.F. Bennett Nucleic Acids Res. 35 2007 687 700
175. N. Langkjar, A. Pasternak, and J. Wengel Bioorg. Med. Chem. 17 2009 5420 5425
176. J.K. Watts, G.F. Deleavey, and M.J. Damha Drug Discovery Today 13 2008 842 855
177. H. Peacock, A. Kannan, P.A. Beal, and C.J. Burrows J. Org. Chem. 76 2011 7295 7300
178. M. Fisher, M. Abramov, A.A. Van, J. Rozenski, V. Dixit, R.L. Juliano, and P. Herdewijn Eur. J. Pharmacol. 606 2009 38 44
179. S. Shah, S. Rangarajan, and S.H. Friedman Angew. Chem. Int. Ed. Engl. 44 2005 1328 1332
180. P. Guo Nat. Nanotechnol. 5 2010 833 842
181. M. Zuker, and P. Stiegler Nucleic Acids Res. 9 1981 133 148
182. E. Bindewald, K. Afonin, L. Jaeger, and B.A. Shapiro ACS Nano 5 2011 9542 9551
183. E. Bindewald, C. Grunewald, B. Boyle, M. O'Connor, and B.A. Shapiro J. Mol. Graphics Modell. 27 2008 299 308
184. H.M. Martinez, J.V. Maizel, and B.A. Shapiro J. Biomol. Struct. Dyn. 25 2008 669 683
185. E. Bindewald, R. Hayes, Y.G. Yingling, W. Kasprzak, and B.A. Shapiro Nucleic Acids Res. 36 2008 D392 D397
186. S. Abdelmawla, S. Guo, L. Zhang, S. Pulukuri, P. Patankar, P. Conley, J. Trebley, P. Guo, and Q.X. Li Mol. Ther. 19 2011 1312 1322
187. S. Hoeprich, Q. ZHou, S. Guo, G. Qi, Y. Wang, and P. Guo Gene Ther. 10 2003 1258 1267
188. S. Guo, F. Huang, and P. Guo Gene Ther. 13 2006 814 820
189. H.M. Zhang, Y. Su, S. Guo, J. Yuan, T. Lim, J. Liu, P. Guo, and D. Yang Antiviral Res. 83 2009 307 316
190. K.A. Afonin, M. Viard, I. Kagiampakis, C.L. Case, M.A. Dobrovolskaia, J. Hofmann, A. Vrzak, M. Kireeva, W.K. Kasprzak, and V.N. KewalRamani ACS Nano 9 2015 251 259
191. J.L. Rouge, L.L. Hao, X.C.A. Wu, W.E. Briley, and C.A. Mirkin ACS Nano 8 2014 8837 8843
192. S.A. Jensen, E.S. Day, C.H. Ko, L.A. Hurley, J.P. Luciano, F.M. Kouri, T.J. Merkel, A.J. Luthi, P.C. Patel, J.I. Cutler, W.L. Daniel, A.W. Scott, M.W. Rotz, T.J. Meade, D.A. Giljohann, C.A. Mirkin, and A.H. Stegh Sci. Transl. Med. 5 2013 209ra152
193. Q. Jiang, C. Song, J. Nangreave, X. Liu, L. Lin, D. Qiu, Z.G. Wang, G. Zou, X. Liang, and H. Yan J. Am. Chem. Soc. 134 2012 13396 13403
194. Q. Zhang, Q. Jiang, N. Li, L. Dai, Q. Liu, L. Song, J. Wang, Y. Li, J. Tian, and B. Ding ACS Nano 8 2014 6633 6643
195. E. Hood, E. Simone, P. Wattamwar, T. Dziubla, and V. Muzykantov Nanomedicine (Lond) 6 2011 1257 1272
196. T. Teesalu, K.N. Sugahara, and E. Ruoslahti Methods Enzymol. 503 2012 35
197. M. Dan, D.B. Cochran, R.A. Yokel, and T.D. Dziubla PLoS ONE 8 2013 e81051
198. S. Muro, R. Wiewrodt, A. Thomas, L. Koniaris, S.M. Albelda, V.R. Muzykantov, and M. Koval J. Cell Sci. 116 2003 1599 1609
199. T. Bhowmick, E. Berk, X. Cui, V.R. Muzykantov, and S. Muro J. Controlled Release 157 2012 485 492
200. A.J. Calderon, T. Bhowmick, J. Leferovich, B. Burman, B. Pichette, V. Muzykantov, D.M. Eckmann, and S. Muro J. Controlled Release 150 2011 37 44
201. S. Muro, T. Dziubla, W. Qiu, J. Leferovich, X. Cui, E. Berk, and V.R. Muzykantov J. Pharmacol. Exp. Ther. 317 2006 1161 1169
202. M.D. Howard, E.D. Hood, C.F. Greineder, I.S. Alferiev, M. Chorny, and V. Muzykantov Mol. Pharmaceutics 11 2014 2262 2270
203. M.A. McAteer, N.R. Sibson, C. von zur Muhlen, J.E. Schneider, A.S. Lowe, N. Warrick, K.M. Channon, D.C. Anthony, and R.P. Choudhury Nat. Med. 13 2007 1253 1258
204. H. Yang, F. Zhao, Y. Li, M. Xu, L. Li, C. Wu, H. Miyoshi, and Y. Liu Int. J. Nanomed. 8 2013 1897
205. M. Christofidou-Solomidou, S. Kennel, A. Scherpereel, R. Wiewrodt, C.C. Solomides, G.G. Pietra, J.C. Murciano, S.A. Shah, H. Ischiropoulos, and S.M. Albelda Am. J. Pathol. 160 2002 1155 1169
206. C. Garnacho, R. Dhami, E. Simone, T. Dziubla, J. Leferovich, E.H. Schuchman, V. Muzykantov, and S. Muro J. Pharmacol. Exp. Ther. 325 2008 400 408
207. T.M. Maul, D.D. Dudgeon, M.T. Beste, D.A. Hammer, J.S. Lazo, F.S. Villanueva, and W.R. Wagner Biotechnol. Bioeng. 107 2010 854 864
208. W.C. Aird Crit. Care Med. 31 2003 S221 S230
209. J. Voigt, J. Christensen, and V.P. Shastri Proc. Natl. Acad. Sci. U.S.A. 111 2014 2942 2947
210. V. Bagalkot, L. Zhang, E. Levy-Nissenbaum, S. Jon, P.W. Kantoff, R. Langer, and O.C. Farokhzad Nano Lett. 7 2007 3065 3070
211. S. Shigdar, L. Qiao, S.F. Zhou, D. Xiang, T. Wang, Y. Li, L.Y. Lim, L. Kong, L. Li, and W. Duan Cancer Lett. 330 2013 84 95
212. S. Da Rocha Gomes, J. Miguel, L. Azéma, S. Eimer, C. Ries, E. Dausse, H. Loiseau, M. Allard, and J.J. Toulmé Bioconjugate Chem. 23 2012 2192 2200
213. D. Kim, Y.Y. Jeong, and S. Jon ACS Nano 4 2010 3689 3696
214. J.S. Paige, K.Y. Wu, and S.R. Jaffrey Science 333 2011 642 646
215. J.S. Paige, T. Nguyen-Duc, W. Song, and S.R. Jaffrey Science 335 2012 1194
216. R. Reif, F. Haque, and P. Guo Nucleic Acid Ther. 22 6 2013 428 437
217. S. Muller, D. Strohbach, and J. Wolf Nanobiotechnol., IEE Proc. 153 2006 31 40
218. H. Pei, X. Zuo, D. Pan, J. Shi, Q. Huang, and C. Fan NPG Asia Mater. 5 2013 e51
219. K. Maehashi, T. Katsura, K. Kerman, Y. Takamura, K. Matsumoto, and E. Tamiya Anal. Chem. 79 2007 782 787
220. I. Willner, and E. Katz Angew. Chem. Int. Ed. 39 2000 1180 1218
221. S. Seetharaman, M. Zivarts, N. Sudarsan, and R.R. Breaker Nat. Biotechnol. 19 2001 336 341
222. J.R. Hesselberth, M.P. Robertson, S.M. Knudsen, and A.D. Ellington Anal. Biochem. 312 2003 106 112
223. S. Song, L. Wang, J. Li, C. Fan, and J. Zhao TrAC, Trends Anal. Chem. 27 2008 108 117
224. C. Furutani, K. Shinomiya, Y. Aoyama, K. Yamada, and S. Sando Mol. Biosyst. 6 2010 1569 1571
225. E.E. Ferapontova, E.M. Olsen, and K.V. Gothelf J. Am. Chem. Soc. 130 2008 4256 4260
226. C.A. Kellenberger, S.C. Wilson, J. Sales-Lee, and M.C. Hammond J. Am. Chem. Soc. 135 2013 4906 4909
227. H. Deng, W. Shen, Y. Ren, and Z. Gao Biosensors and Bioelectronics 60 2014 195 200
228. J. Min, and A.J. Baeumner Analyt Biochem 303 2002 186 193
229. A.J. Baeumner, R.N. Cohen, V. Miksic, and J. Min Biosens. Bioelectron. 18 2003 405 413
230. M. Wang, H. Yin, N. Shen, Z. Xu, B. Sun, and S. Ai Biosens. Bioelectron. 53 2014 232 237
231. A. Qureshi, Y. Gurbuz, S. Kallempudi, and J.H. Niazi Phys. Chem. Chem. Phys. 12 2010 9176 9182
232. L. Zhai, T. Wang, K. Kang, Y. Zhao, P. Shrotriya, and M. Nilsen-Hamilton Anal. Chem. 84 2012 8763 8770
233. E.E. Ferapontova, and K.V. Gothelf Electroanalysis 21 2009 1261 1266
234. J.A. Sioss, R.B. Bhiladvala, W. Pan, M. Li, S. Patrick, P. Xin, S.L. Dean, C.D. Keating, T.S. Mayer, and G.A. Clawson Nanomed.: Nanotechnol. Biol. Med. 8 2012 1017 1025
235. E. Farjami, R. Campos, J.S. Nielsen, K.V. Gothelf, J. Kjems, and E.E. Ferapontova Anal. Chem. 85 2012 121 128
236. M. Qiu, and E.H.M. Sha ACM Trans. Des. Autom. Electron. Syst. 14 2009 1 30
237. A. Noy Adv. Mater. 23 2011 807 820
238. W. Lu, and C.M. Lieber Nat. Mater. 6 2007 841 850
239. I. Willner, and E. Katz Bioelectronics: From Theory to Applications 2005 John Wiley & Sons New York
240. A.P. De Silva, and S. Uchiyama Nat. Nanotechnol. 2 2007 399 410
241. J.R. Heath, and M.A. Ratner Phys. Today 56 2003 43 49
242. R. Di Felice Nanobioelectronics-for Electronics, Biology and Medicine 2009 Springer New York 43 79
243. Y.S. Chen, M.Y. Hong, and G.S. Huang Nat. Nanotechnol. 7 2012 197 203
244. R. Baron, O. Lioubashevski, E. Katz, T. Niazov, and I. Willner Angew. Chem. Int. Ed. 45 2006 1572 1576
245. K. Fujibayashi, R. Hariadi, S.H. Park, E. Winfree, and S. Murata Nano Lett. 8 2007 1791 1797
246. M. Qiu, E. Khisamutdinov, Z. Zhao, C. Pan, J. Choi, N. Leontis, and P. Guo Philos. Trans. R. Soc. A 371 2013 20120310
247. D. Faulhammer, A.R. Cukras, R.J. Lipton, and L.F. Landweber Proc. Natl. Acad. Sci. U.S.A. 97 2000 1385 1389
248. Y. Benenson, B. Gil, U. Ben-Dor, R. Adar, and E. Shapiro Nature 429 2004 423 429
249. K. Rinaudo, L. Bleris, R. Maddamsetti, S. Subramanian, R. Weiss, and Y. Benenson Nat. Biotechnol. 25 2007 795 801
250. M.N. Win, and C.D. Smolke Science 322 2008 456 460
251. L.M. Adleman Science 266 1994 1021 1024
252. G.P. Archer, S. Bone, and R. Pethig J. Mol. Electron. 6 1990 199 207
253. A. Okamoto, K. Tanaka, and I. Saito J. Am. Chem. Soc. 126 2004 9458 9463
254. D.Y. Zhang, A.J. Turberfield, B. Yurke, and E. Winfree Science 318 2007 1121 1125
255. B.K. Nanjwade, H.M. Bechra, G.K. Derkar, F.V. Manvi, and V.K. Nanjwade Eur. J. Pharm. Sci. 38 2009 185 196
256. S.E. Lee, D.Y. Sasaki, Y. Park, R. Xu, J.S. Brennan, M.J. Bissell, and L.P. Lee ACS Nano 6 2012 7770 7780
257. W. Weber, J. Stelling, M. Rimann, B. Keller, M. oud-El Baba, C.C. Weber, D. Aubel, and M. Fussenegger Proc. Natl. Acad. Sci. U.S.A. 104 2007 2643 2648
258. W. Weber, R. Schoenmakers, B. Keller, M. Gitzinger, T. Grau, M. oud-El Baba, P. Sander, and M. Fussenegger Proc. Natl. Acad. Sci. U.S.A. 105 2008 9994 9998
259. S. Auslander, D. Auslander, M. Muller, M. Wieland, and M. Fussenegger Nature 487 2012 123 127
260. Y. Benenson Nat. Rev. Genet. 13 2012 455 468
261. Z. Xie, S.J. Liu, L. Bleris, and Y. Benenson Nucleic Acids Res. 38 2010 2692 2701
262. Z. Xie, L. Wroblewska, L. Prochazka, R. Weiss, and Y. Benenson Science 333 2011 1307 1311
263. C. Lou, X. Liu, M. Ni, Y. Huang, Q. Huang, L. Huang, L. Jiang, D. Lu, M. Wang, C. Liu, D. Chen, C. Chen, X. Chen, L. Yang, H. Ma, J. Chen, and Q. Ouyang Mol. Syst. Biol. 6 2010 350
264. Y. Benenson Curr. Opin. Biotechnol. 20 2009 471 478
265. M.N. Win, and C.D. Smolke Proc. Natl. Acad. Sci. U.S.A. 104 2007 14283 14288
266. T. Lee, A.K. Yagati, F. Pi, A. Sharma, J.-W. Choi, and P. Guo ACS Nano 9 2015 6675 6682
267. P. Routh, P. Mukherjee, A. Dawn, and A.K. Nandi Biophys. Chem. 143 2009 145 153
268. A.K. Geim, and K.S. Novoselov Nat. Mater. 6 2007 183 191
269. A.K. Geim Science 324 2009 1530 1534
270. A. Sinha, and N.R. Jana ACS Appl. Mater. Interfaces 7 2015 9911 9919
271. S. Eissa, A. Ng, M. Siaj, and M. Zourob Anal. Chem. 86 2014 7551 7557
272. R.Y. Li, Q.F. Xia, Z.J. Li, X.L. Sun, and J.K. Liu Biosens. Bioelectron. 44 2013 235 240
273. H.M. Zhao, J.P. Tian, and X. Quan Colloids Surf., B: Biointerfaces 103 2013 38 44
274. X. Hu, L. Mu, J. Wen, and Q. Zhou J. Hazard. Mater. 213 2012 387 392
275. L. Zhang, Z. Lu, Q. Zhao, J. Huang, H. Shen, and Z. Zhang Small 7 2011 460 464
276. F. Sharifi, R. Bauld, M.S. Ahmed, and G. Fanchini Small 8 2012 699 706
277. J.H. Jeong, H. Mok, Y.K. Oh, and T.G. Park Bioconjugate Chem. 20 2008 5 14
278. A.M. Derfus, A.A. Chen, D.H. Min, E. Ruoslahti, and S.N. Bhatia Bioconjugate Chem. 18 2007 1391 1396
279. N. Singh, A. Agrawal, A.K. Leung, P.A. Sharp, and S.N. Bhatia J. Am. Chem. Soc. 132 2010 8241 8243
280. Z. Medarova, W. Pham, C. Farrar, V. Petkova, and A. Moore Nat. Med. 13 2007 372 377
281. D. Moll, and P. Guo J. Nanosci. Nanotechnol. (JNN) 7 2007 3257 3267
282. A.K. Gupta, and M. Gupta Biomaterials 26 2005 3995 4021
283. A.J. Perrett, R.L. Dickinson, Ž. Krpetić, M. Brust, H. Lewis, I.C. Eperon, and G.A. Burley Chem. Sci. 4 2013 257 265
284. N. Bourassa, and F. Major Biochimie 84 2002 945 951