RNA biosensor for the rapid detection of viable Escherichia coli in drinking water

Biosensors and Bioelectronics

Volumn 18, Issue 4, 2003, Pages 405-413

  Baeumner, Antje J ^a   Cohen, Richard N ^a   Miksic, Vonya ^a   Min, Junhong ^a  

^a Department of Biological and Environmental Engineering   (United States)

Author keywords

E. Coli; NASBA; Optical detection; Rapid detection; RNA biosensor; Sensitive detection; Specific detection

Indexed keywords

AMPLIFICATION; BIOLOGICAL MEMBRANES; CORRELATION METHODS; DNA; ESCHERICHIA COLI; EXTRACTION; POTABLE WATER; PROTEINS; RNA;

NASBA; OPTICAL DETECTION; RAPID DETECTION; RNA BIOSENSOR; SENSITIVE DETECTION; SPECIFIC DETECTION;

BIOSENSORS;

DRINKING WATER; HEAT SHOCK PROTEIN; LIPOSOME; MESSENGER RNA;

ARTICLE; BACTERIUM DETECTION; BACTERIUM IDENTIFICATION; BIOSENSOR; CONTROLLED STUDY; DNA HYBRIDIZATION; DNA PROBE; DNA SEQUENCE; ESCHERICHIA COLI; NONHUMAN; NUCLEIC ACID SEQUENCE BASED AMPLIFICATION; RNA BIOSENSOR; RNA EXTRACTION; RNA HYBRIDIZATION; CHEMISTRY; CLASSIFICATION; COMPARATIVE STUDY; ELECTRONICS; EVALUATION; GENETIC PROCEDURES; GENETICS; INSTRUMENTATION; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; NUCLEIC ACID AMPLIFICATION; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; VALIDATION STUDY; WATER POLLUTION; WATER SUPPLY;

ESCHERICHIA COLI;

BIOSENSING TECHNIQUES; ESCHERICHIA COLI; MICROCHEMISTRY; MINIATURIZATION; NUCLEIC ACID AMPLIFICATION TECHNIQUES; REPRODUCIBILITY OF RESULTS; RNA, MESSENGER; SENSITIVITY AND SPECIFICITY; WATER MICROBIOLOGY; WATER POLLUTION; WATER SUPPLY;

EID: 0642340797     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0956-5663(02)00162-8     Document Type: Article

References (21)

1. Baeumner, A.J., Humiston, M.C., Montagna, R.A., Durst, R.A., 2001. Detection of viable oocysts of Cryptosporidium parvum following nucleic acid sequence based amplification. Anal. Chem. 73, 1176-1180.
2. Bej, A.K., Ng, W.Y., Mogan, S., Jones, D., Mabbubani, M.H., 1991. Detection of viable Vibrio cholerae by reverse-transcriptase polymerase chain reaction (RT-PCR). Mol. Biotechnol. 5, 1-10.
3. Boom, R., Sol, C.J.A., Salimans, M.M.M., Jansen, C.L., Wertheim-van-Dillen, P.M.E., van der Noordaa, J., 1990. Rapid and simple method for purification of nucleic acids. J. Clin. Microbiol. 28, 495-503.
4. Gauthier, F., Archibald, F., 2001. The ecology of 'fecal indicator' bacteria commonly found in pulp and paper mill water systems. Water Res. 35, 2207-2218.
5. Green, D.H., Lewis, G.D., Rodtong, S., Loutil, M.W., 1991. Detection of fecal pollution in water by an Escherichia coli uidA-gene probe. J. Microbiol. Methods 13, 207-214.
6. Hu, Y., Zhang, Q., Meitzer, J.C., 1999. Rapid and sensitive detection of Eshcerichia coli O157:H7 in bovine faeces by a multiplex PCR. J. Appl. Microbiol. 87, 867-876.
7. Ivnitski, D., Abdel-Hamid, I., Atanasov, P., Wilkins, E., 1999. Biosensors for the detection of pathogenic bacteria. Biosens. Bioelectron. 14, 599-624.
8. Jeffrey, W.H., Nazaret, S., von Haven, R., 1994. Improved method for recovery of mRNA from aquatic samples and its application to detection of mer expression. Appl. Environ. Microbiol. 60, 1814-1820.
9. Johnson, D., Pieniazek, N.J., Griffin, D.W., Misener, L., Rose, J.B., 1995. Development of a PCR protocol for sensitive detection of Cryptosporidium oocysts in water samples. Appl. Environ. Microbiol. 61, 3849-3855.
10. Mead, P.S., Slutsker, L., Dietz, V., McCaig, L.F., Bresee, J.S., Shapiro, C., Griffin, P.M., Tauxe, R.V., 1999. Food-related illness and death in the United States. Emerg. Infect. Dis. 5 (5), 607-625.
11. Min, J.H., Baeumner, A.J., 2002. Highly sensitive and specific detection of viable Escherichia coli in drinking water. Anal. Biochem. 303, 186-193.
12. Patel, B.K.R., Banjerjee, D.K., Butcher, P.D., 1993. Determination of Myeobacterium leprac viability by polymerase chain reaction amplification of 71-kDa heat shock protein mRNA. J. Infect. Dis. 168 (3), 799-800.
13. Rice, E.W., Covert, T.C., Johnson, S.A., Reasoner, D.J., 1995. Detection of Escherichia coli in water using a colormetric gene probe assay. J. Environ. Sci. Health A30, 1059-1067.
14. Sela, M., Anfinsen, C.B., Harrington, W.F., 1957. The correlation of ribonuclease activity with specific aspects of tertiary structure. Biochem. Biophys. Acta 26, 502.
15. Sheridan, G.E.C., Masters, C.I., Shallcross, J.A., Mackey, B.M., 1998. Detection of mRNA by reverse transcription-RCR as an indicator of viability in Escherichia coli cells. Appl. Environ. Microbiol. 64, 1313-1318.
16. Siebert, S.T.A., Reeves, S.G., Durst, R.A., 1993. Liposome immunomigration field assay device for Alachlor determination. Anal. Chim. Acta 282, 297-305.
17. Simpkins, S.A., Chan, A.B., Hays, J., Popping, B., Cook, N., 2000. An RNA transcription-based amplification technique (NASBA) for the detection of viable Salmonella enterica. Lett. Appl. Microbiol. 30, 75-79.
18. Spierings, G., Ockhuijsen, C., Hofstra, H., Tommassen, J., 1993. Polymerase chain reaction for the specific detection of Escherichia coli/Shigella. Res. Microbiol. 144, 557-564.
19. Uyttendaele, M., Bastiaansen, A., Debevere, J., 1997. Evaluation of the NASBA nucleic acid amplification system for assessment of the viability of Campylobacter jejuni. Int. J. Food Microbiol. 37, 13-20.
20. Van der Vliet, G.M.E., Schepers, P., Schukkink, R.A.F., Van Gemen, B., Klatser, P.R., 1994. Assessment of myeobacterial biability by RNA amplification. Antimicrob. Agents Chemother. 38, 1959-1965.
21. Wang, J., Rivas, G., Parrado, C., Xiaohua, C., Flair, M., 1997. Electrochemical biosensor for detecting DNA sequences from the pathogenic protozoan Cryptosporidiun parvum. Talanta 44, 2003-2010.