-
1
-
-
65849231067
-
Cost minimization while satisfying hard/soft timing constraints for heterogeneous embedded systems
-
doi:10.1145/1497561.1497568
-
Qiu M, Sha EHM. 2009 Cost minimization while satisfying hard/soft timing constraints for heterogeneous embedded systems. ACM Trans. Des. Autom. Electron. Syst. 14, 25. (doi:10.1145/1497561.1497568).
-
(2009)
ACM Trans. Des. Autom. Electron. Syst.
, vol.14
, pp. 25
-
-
Qiu, M.1
Sha, E.H.M.2
-
2
-
-
57049182063
-
Report to congress on server and data center energy efficiency
-
US Environmental Protection Agency., Washington, DC: US Environmental Protection Agency
-
US Environmental Protection Agency. 2007 Report to Congress on server and data center energy efficiency. Public Law 109-431. Washington, DC: US Environmental Protection Agency.
-
(2007)
Public Law
, pp. 109-431
-
-
-
3
-
-
0034642504
-
Molecular computation: Dna computing on a chip
-
doi:10.1038/35003071
-
Ogihara M, Ray A. 2000 Molecular computation: DNA computing on a chip. Nature 403, 143-144. (doi:10.1038/35003071).
-
(2000)
Nature
, vol.403
, pp. 143-144
-
-
Ogihara, M.1
Ray, A.2
-
4
-
-
0035936116
-
Programmable and autonomous computing machine made of biomolecules
-
doi:10.1038/35106533
-
Benenson Y, Paz-Elizur T, Adar R, Keinan E, Livneh Z, Shapiro E. 2001 Programmable and autonomous computing machine made of biomolecules. Nature 414, 430-434. (doi:10.1038/35106533).
-
(2001)
Nature
, vol.414
, pp. 430-434
-
-
Benenson, Y.1
Paz-Elizur, T.2
Adar, R.3
Keinan, E.4
Livneh, Z.5
Shapiro, E.6
-
5
-
-
0037134038
-
Computing: Successes and challenges
-
doi:10.1126/science.1070978
-
Reif JH. 2002 Computing: successes and challenges. Science 296, 478-479. (doi:10.1126/science.1070978).
-
(2002)
Science
, vol.296
, pp. 478-479
-
-
Reif, J.H.1
-
6
-
-
2642555548
-
An autonomous molecular computer for logical control of gene expression
-
doi:10.1038/nature02551
-
Benenson Y, Gil B, Ben-Dor U, Adar R, Shapiro E. 2004 An autonomous molecular computer for logical control of gene expression. Nature 429, 423-429. (doi:10.1038/nature02551).
-
(2004)
Nature
, vol.429
, pp. 423-429
-
-
Benenson, Y.1
Gil, B.2
Ben-Dor, U.3
Adar, R.4
Shapiro, E.5
-
7
-
-
11144297248
-
Molecular computation: Molecular logic gets loaded
-
doi:10.1038/nmat1301
-
De Silva AP. 2005 Molecular computation: molecular logic gets loaded. Nat. Mater. 4, 15-16. (doi:10.1038/nmat1301).
-
(2005)
Nat. Mater.
, vol.4
, pp. 15-16
-
-
De Silva, A.P.1
-
9
-
-
0025498643
-
Dielectric studies of bistable ionic transitions in solid-state DNA: Model of relevance to the development of molecular logic systems
-
Archer GP, Bone S, Pethig R. 1990 Dielectric studies of bistable ionic transitions in solid-state DNA: model of relevance to the development of molecular logic systems. J. Mol. Electron. 6, 199-207.
-
(1990)
J. Mol. Electron.
, vol.6
, pp. 199-207
-
-
Archer, G.P.1
Bone, S.2
Pethig, R.3
-
10
-
-
84939348981
-
Application of logic programming techniques to dna-sequence gelreading (logic programming, expert systems)
-
COMP10
-
Overbeek R. 1989 Application of logic programming techniques to DNA-sequence gelreading (logic programming, expert systems). Abstr. Pap. Am. Chem. Soc. 198, COMP10.
-
(1989)
Abstr. Pap. Am. Chem. Soc.
, vol.198
-
-
Overbeek, R.1
-
11
-
-
0028114541
-
Molecular computation of solutions to combinatorial problems
-
doi:10.1126/science.7973651
-
Adleman LM. 1994 Molecular computation of solutions to combinatorial problems. Science 266, 1021-1024. (doi:10.1126/science.7973651).
-
(1994)
Science
, vol.266
, pp. 1021-1024
-
-
Adleman, L.M.1
-
12
-
-
77950444491
-
DNA as a universal substrate for chemical kinetics
-
USA, (doi:10.1073/pnas.0909380107
-
Soloveichik D, Seelig G, Winfree E. 2010 DNA as a universal substrate for chemical kinetics. Proc. Natl Acad. Sci. USA 107, 5393-5398. (doi:10.1073/pnas.0909380107).
-
(2010)
Proc. Natl Acad. Sci.
, vol.107
, pp. 5393-5398
-
-
Soloveichik, D.1
Seelig, G.2
Winfree, E.3
-
13
-
-
67650657139
-
A programming language for composable DNA circuits
-
doi:10.1098/rsif.2009.0072.focus
-
Phillips A, Cardelli L. 2009 A programming language for composable DNA circuits. J. R. Soc. Interface 6, S419-S436. (doi:10.1098/rsif.2009.0072.focus).
-
(2009)
J. R. Soc. Interface
, vol.6
-
-
Phillips, A.1
Cardelli, L.2
-
14
-
-
33845411737
-
Enzyme-free nucleic acid logic circuits
-
doi:10.1126/science.1132493
-
Seelig G, Soloveichik D, Zhang DY, Winfree E. 2006 Enzyme-free nucleic acid logic circuits. Science 314, 1585-1588. (doi:10.1126/science.1132493).
-
(2006)
Science
, vol.314
, pp. 1585-1588
-
-
Seelig, G.1
Soloveichik, D.2
Zhang, D.Y.3
Winfree, E.4
-
15
-
-
36248972215
-
Engineering entropy-driven reactions and networks catalyzed by DNA
-
doi:10.1126/science.1148532
-
Zhang DY, Turberfield AJ, Yurke B, Winfree E. 2007 Engineering entropy-driven reactions and networks catalyzed by DNA. Science 318, 1121-1125. (doi:10.1126/science.1148532).
-
(2007)
Science
, vol.318
, pp. 1121-1125
-
-
Zhang, D.Y.1
Turberfield, A.J.2
Yurke, B.3
Winfree, E.4
-
16
-
-
38349121586
-
Programming biomolecular self-assembly pathways
-
doi:10.1038/nature06451
-
Yin P, Choi HMT, Calvert CR, Pierce NA. 2008 Programming biomolecular self-assembly pathways. Nature 451, 318-322. (doi:10.1038/nature06451).
-
(2008)
Nature
, vol.451
, pp. 318-322
-
-
Yin, P.1
Choi, H.M.T.2
Calvert, C.R.3
Pierce, N.A.4
-
17
-
-
79951948526
-
A boolean-based systems biology approach to predict novel genes associated with cancer: Application to colorectal cancer
-
doi:10.1186/1752-0509-5-35
-
Nagaraj SH, Reverter A. 2011 A Boolean-based systems biology approach to predict novel genes associated with cancer: application to colorectal cancer. BMC Syst. Biol. 5, 35. (doi:10.1186/1752-0509-5-35).
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. 35
-
-
Nagaraj, S.H.1
Reverter, A.2
-
18
-
-
58349111535
-
Sparse combinatorial inference with an application in cancer biology
-
doi:10.1093/bioinformatics/btn611
-
Mukherjee S, Pelech S, Neve RM, Kuo WL, Ziyad S, Spellman PT, Gray JW, Speed TP. 2009 Sparse combinatorial inference with an application in cancer biology. Bioinformatics 25, 265-271. (doi:10.1093/bioinformatics/btn611).
-
(2009)
Bioinformatics
, vol.25
, pp. 265-271
-
-
Mukherjee, S.1
Pelech, S.2
Neve, R.M.3
Kuo, W.L.4
Ziyad, S.5
Spellman, P.T.6
Gray, J.W.7
Speed, T.P.8
-
19
-
-
0034727072
-
Logical computation using algorithmic selfassembly of dna triple-crossover molecules
-
doi:10.1038/35035038
-
Mao C, LaBean TH, Relf JH, Seeman NC. 2000 Logical computation using algorithmic selfassembly of DNA triple-crossover molecules. Nature 407, 493-496. (doi:10.1038/35035038).
-
(2000)
Nature
, vol.407
, pp. 493-496
-
-
Mao, C.1
Labean, T.H.2
Relf, J.H.3
Seeman, N.C.4
-
20
-
-
70349970815
-
Coherent activation of DNA tweezers: A 'SET-RESET' logic system
-
doi:10.1002/anie.200805819
-
Elbaz J, Moshe M, Willner I. 2009 Coherent activation of DNA tweezers: A 'SET-RESET' logic system. Angew. Chem. Int. Ed. Engl. 48, 3834-3837. (doi:10.1002/anie.200805819).
-
(2009)
Angew. Chem. Int. Ed. Engl.
, vol.48
, pp. 3834-3837
-
-
Elbaz, J.1
Moshe, M.2
Willner, I.3
-
21
-
-
70349659525
-
+ ions by nucleic acid functionalized Cdse/Zns quantum dots and their use for logic gate operations
-
doi:10.1002/anie.200902395
-
+ ions by nucleic acid functionalized CdSe/ZnS quantum dots and their use for logic gate operations. Angew. Chem. Int. Ed. Engl. 48, 7818-7821. (doi:10.1002/anie.200902395).
-
(2009)
Angew. Chem. Int. Ed. Engl.
, vol.48
, pp. 7818-7821
-
-
Freeman, R.1
Finder, T.2
Willner, I.3
-
22
-
-
36949011385
-
Modular multi-level circuits from immobilized DNA-based logic gates
-
doi:10.1021/ja0710149
-
Frezza BM, Cockroft SL, Ghadiri MR. 2007 Modular multi-level circuits from immobilized DNA-based logic gates. J. Am. Chem. Soc. 129, 14 875-14 879. (doi:10.1021/ja0710149).
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 14875-14879
-
-
Frezza, B.M.1
Cockroft, S.L.2
Ghadiri, M.R.3
-
23
-
-
33845288979
-
DNA logic gates based on structural polymorphism of telomere DNA molecules responding to chemical input signals
-
doi:10.1002/anie.200602404
-
Miyoshi D, Inoue M, Sugimoto N. 2006 DNA logic gates based on structural polymorphism of telomere DNA molecules responding to chemical input signals. Angew. Chem. Int. Ed. Engl. 45, 7716-7719. (doi:10.1002/anie.200602404).
-
(2006)
Angew. Chem. Int. Ed. Engl.
, vol.45
, pp. 7716-7719
-
-
Miyoshi, D.1
Inoue, M.2
Sugimoto, N.3
-
24
-
-
69549138408
-
Ultrasensitive and selective colorimetric dna detection by nicking endonuclease assisted nanoparticle amplification
-
doi:10.1002/anie.200901772
-
Xu W, Xue X, Li T, Zeng H, Liu X. 2009 Ultrasensitive and selective colorimetric DNA detection by nicking endonuclease assisted nanoparticle amplification. Angew. Chem. Int. Ed. Engl. 48, 6849-6852. (doi:10.1002/anie. 200901772).
-
(2009)
Angew. Chem. Int. Ed. Engl.
, vol.48
, pp. 6849-6852
-
-
Xu, W.1
Xue, X.2
Li, T.3
Zeng, H.4
Liu, X.5
-
25
-
-
33947236309
-
The aggregation of au nanoparticles by an autonomous dna machine detects viruses
-
doi:10.1002/smll.200600450
-
Beissenhirtz MK, Elnathan R, Weizmann Y, Willner I. 2007 The aggregation of Au nanoparticles by an autonomous DNA machine detects viruses. Small 3, 375-379. (doi:10.1002/smll.200600450).
-
(2007)
Small
, vol.3
, pp. 375-379
-
-
Beissenhirtz, M.K.1
Elnathan, R.2
Weizmann, Y.3
Willner, I.4
-
26
-
-
84878109309
-
DNA electronic logic gates based on metalion- dependent induction of oligonucleotide structural motifs
-
doi:10.1002/chem.201300625
-
Zhang YM, Zhang L, Liang RP, Qiu JD. 2013 DNA electronic logic gates based on metalion- dependent induction of oligonucleotide structural motifs. Chemistry 19, 6961-6965. (doi:10.1002/chem.201300625).
-
(2013)
Chemistry
, vol.19
, pp. 6961-6965
-
-
Zhang, Y.M.1
Zhang, L.2
Liang, R.P.3
Qiu, J.D.4
-
27
-
-
84864142728
-
Simple and universal platform for logic gate operations based on molecular beacon probes
-
doi:10.1002/smll.201290077
-
Park KS, Seo MW, Jung C, Lee JY, Park HG. 2012 Simple and universal platform for logic gate operations based on molecular beacon probes. Small 8, 2129. (doi:10.1002/smll.201290077).
-
(2012)
Small
, vol.8
, pp. 2129
-
-
Park, K.S.1
Seo, M.W.2
Jung, C.3
Lee, J.Y.4
Park, H.G.5
-
29
-
-
0034642536
-
DNA computing on surfaces
-
doi:10.1038/35003155
-
Liu Q, Wang L, Frutos AG, Condon AE, Corn RM, Smith LM. 2000 DNA computing on surfaces. Nature 403, 175-179. (doi:10.1038/35003155).
-
(2000)
Nature
, vol.403
, pp. 175-179
-
-
Liu, Q.1
Wang, L.2
Frutos, A.G.3
Condon, A.E.4
Corn, R.M.5
Smith, L.M.6
-
30
-
-
77953658114
-
Colorimetric logic gates based on supramolecular DNAzyme structures
-
doi:10.1002/anie. 201000840
-
Bi S, Yan Y, Hao S, Zhang S. 2010 Colorimetric logic gates based on supramolecular DNAzyme structures. Angew. Chem. Int. Ed. Engl. 49, 4438-4442. (doi:10.1002/anie. 201000840).
-
(2010)
Angew. Chem. Int. Ed. Engl.
, vol.49
, pp. 4438-4442
-
-
Bi, S.1
Yan, Y.2
Hao, S.3
Zhang, S.4
-
31
-
-
84879112265
-
Colorimetric logic gates based on ion-dependent DNAzymes
-
doi:10.1021/jp4027892
-
Zhang L, Zhang YM, Liang RP, Qiu JD. 2013 Colorimetric logic gates based on ion-dependent DNAzymes. J. Phys. Chem. C 117, 12 352-12 357. (doi:10.1021/jp4027892).
-
(2013)
J. Phys. Chem. C
, vol.117
, pp. 12352-12357
-
-
Zhang, L.1
Zhang, Y.M.2
Liang, R.P.3
Qiu, J.D.4
-
32
-
-
77955230397
-
DNA computing circuits using libraries of DNAzyme subunits
-
doi:10.1038/nnano.2010.88
-
Elbaz J, Lioubashevski O, Wang FA, Remacle F, Levine RD, Willner I. 2010 DNA computing circuits using libraries of DNAzyme subunits. Nat. Nanotechnol. 5, 417-422. (doi:10.1038/nnano.2010.88).
-
(2010)
Nat. Nanotechnol.
, vol.5
, pp. 417-422
-
-
Elbaz, J.1
Lioubashevski, O.2
Wang, F.A.3
Remacle, F.4
Levine, R.D.5
Willner, I.6
-
33
-
-
79957946108
-
Scaling up digital circuit computation with dna strand displacement cascades
-
doi:10.1126/science.1200520
-
Qian L, Winfree E. 2011 Scaling up digital circuit computation with DNA strand displacement cascades. Science 332, 1196-1201. (doi:10.1126/science. 1200520).
-
(2011)
Science
, vol.332
, pp. 1196-1201
-
-
Qian, L.1
Winfree, E.2
-
34
-
-
0032110708
-
Inter-RNA interaction of phage φ29 pRNA to form a hexameric complex for viral DNA transportation
-
doi:10.1016/S1097-2765(00)80124-0
-
Guo P, Zhang C, Chen C, Trottier M, Garver K. 1998 Inter-RNA interaction of phage φ29 pRNA to form a hexameric complex for viral DNA transportation. Mol. Cell 2, 149-155. (doi:10.1016/S1097-2765(00)80124-0).
-
(1998)
Mol. Cell
, vol.2
, pp. 149-155
-
-
Guo, P.1
Zhang, C.2
Chen, C.3
Trottier, M.4
Garver, K.5
-
35
-
-
24944512987
-
Specific delivery of therapeutic RNAs to cancer cells via the dimerization mechanism of φ29 motor pRNA
-
doi:10.1089/hum.2005.16.1097
-
Guo S, Tschammer N, Mohammed S, Guo P. 2005 Specific delivery of therapeutic RNAs to cancer cells via the dimerization mechanism of φ29 motor pRNA. Hum. Gene Ther. 16, 1097-1109. (doi:10.1089/hum.2005.16.1097).
-
(2005)
Hum. Gene Ther.
, vol.16
, pp. 1097-1109
-
-
Guo, S.1
Tschammer, N.2
Mohammed, S.3
Guo, P.4
-
36
-
-
2342493879
-
Construction of φ29 DNA-packaging RNA (pRNA) monomers, dimers and trimers with variable sizes and shapes as potential parts for nanodevices
-
doi:10.1166/jnn.2003.160
-
Shu D, Huang L, Hoeprich S, Guo P. 2003 Construction of φ29 DNA-packaging RNA (pRNA) monomers, dimers and trimers with variable sizes and shapes as potential parts for nanodevices. J. Nanosci. Nanotechnol. 3, 295-302. (doi:10.1166/jnn.2003.160).
-
(2003)
J. Nanosci. Nanotechnol.
, vol.3
, pp. 295-302
-
-
Shu, D.1
Huang, L.2
Hoeprich, S.3
Guo, P.4
-
37
-
-
4644326818
-
Bottom-up assembly of RNA arrays and superstructures as potential parts in nanotechnology
-
doi:10.1021/nl0494497
-
Shu D, Moll WD, Deng Z, Mao C, Guo P. 2004 Bottom-up assembly of RNA arrays and superstructures as potential parts in nanotechnology. Nano Lett. 4, 1717-1723. (doi:10.1021/nl0494497).
-
(2004)
Nano Lett.
, vol.4
, pp. 1717-1723
-
-
Shu, D.1
Moll, W.D.2
Deng, Z.3
Mao, C.4
Guo, P.5
-
38
-
-
79953171803
-
Assembly of multifunctional φ29 pRNA nanoparticles for specific delivery of siRNA and other therapeutics to targeted cells
-
doi:10.1016/j.ymeth.2011.01.008
-
Shu Y, Cinier M, Shu D, Guo P. 2011 Assembly of multifunctional φ29 pRNA nanoparticles for specific delivery of siRNA and other therapeutics to targeted cells. Methods 54, 204-214. (doi:10.1016/j.ymeth.2011.01.008).
-
(2011)
Methods
, vol.54
, pp. 204-214
-
-
Shu, Y.1
Cinier, M.2
Shu, D.3
Guo, P.4
-
39
-
-
0032111970
-
Function of hexameric rna in packaging of bacteriophage φ29 dna in vitro
-
doi:10.1016/S1097-2765(00)80123-9
-
Zhang F, Lemieux S, Wu X, St.-Arnaud S, McMurray CT, Major F, Anderson D. 1998 Function of hexameric RNA in packaging of bacteriophage φ29 DNA in vitro. Mol. Cell 2, 141-147. (doi:10.1016/S1097-2765(00)80123-9).
-
(1998)
Mol. Cell
, vol.2
, pp. 141-147
-
-
Zhang, F.1
Lemieux, S.2
Wu, X.3
Arnaud, S.4
Mcmurray, C.T.5
Major, F.6
Anderson, D.7
-
40
-
-
0032563227
-
Bacteriophage DNA packaging: RNA gears in a DNA transport machine (minireview)
-
doi:10.1016/S0092-8674(00)81413-0
-
Hendrix RW. 1998 Bacteriophage DNA packaging: RNA gears in a DNA transport machine (minireview). Cell 94, 147-150. (doi:10.1016/S0092-8674(00) 81413-0).
-
(1998)
Cell
, vol.94
, pp. 147-150
-
-
Hendrix, R.W.1
-
41
-
-
80455154991
-
Thermodynamically stable RNA threeway junctions for constructing multifuntional nanoparticles for delivery of therapeutics
-
doi:10.1038/nnano.2011.105
-
Shu D, Shu Y, Haque F, Abdelmawla S, Guo P. 2011 Thermodynamically stable RNA threeway junctions for constructing multifuntional nanoparticles for delivery of therapeutics. Nat. Nanotechnol. 6, 658-667. (doi:10.1038/nnano.2011. 105).
-
(2011)
Nat. Nanotechnol.
, vol.6
, pp. 658-667
-
-
Shu, D.1
Shu, Y.2
Haque, F.3
Abdelmawla, S.4
Guo, P.5
-
42
-
-
84865784936
-
Ultrastable synergistic tetravalent RNA nanoparticles for targeting to cancers
-
doi:10.1016/j.nantod.2012.06.010
-
Haque F, Shu D, Shu Y, Shlyakhtenko L, Rychahou P, Evers M, Guo P. 2012 Ultrastable synergistic tetravalent RNA nanoparticles for targeting to cancers. Nano Today 7, 245-257. (doi:10.1016/j.nantod.2012.06.010).
-
(2012)
Nano Today
, vol.7
, pp. 245-257
-
-
Haque, F.1
Shu, D.2
Shu, Y.3
Shlyakhtenko, L.4
Rychahou, P.5
Evers, M.6
Guo, P.7
-
43
-
-
24944565527
-
Controllable self-assembly of nanoparticles for specific delivery of multiple therapeutic molecules to cancer cells using RNA nanotechnology
-
doi:10.1021/nl051264s
-
Khaled A, Guo S, Li F, Guo P. 2005 Controllable self-assembly of nanoparticles for specific delivery of multiple therapeutic molecules to cancer cells using RNA nanotechnology. Nano Lett. 5, 1797-1808. (doi:10.1021/nl051264s) .
-
(2005)
Nano Lett.
, vol.5
, pp. 1797-1808
-
-
Khaled, A.1
Guo, S.2
Li, F.3
Guo, P.4
-
44
-
-
33646356236
-
Construction of folate-conjugated pRNA of bacteriophage φ29 DNA packaging motor for delivery of chimeric siRNA to nasopharyngeal carcinoma cells
-
doi:10.1038/sj.gt.3302856
-
Guo S, Huang F, Guo P. 2006 Construction of folate-conjugated pRNA of bacteriophage φ29 DNA packaging motor for delivery of chimeric siRNA to nasopharyngeal carcinoma cells. Gene Ther. 13, 814-820. (doi:10.1038/sj.gt. 3302856).
-
(2006)
Gene Ther
, vol.13
, pp. 814-820
-
-
Guo, S.1
Huang, F.2
Guo, P.3
-
45
-
-
0042172858
-
Bacterial virus φ29 pRNA as a hammerhead ribozyme escort to destroy hepatitis b virus
-
doi:10.1038/sj.gt.3302002
-
Hoeprich S, Zhou Q, Guo S, Qi G, Wang Y, Guo P. 2003 Bacterial virus φ29 pRNA as a hammerhead ribozyme escort to destroy hepatitis B virus. Gene Ther. 10, 1258-1267. (doi:10.1038/sj.gt.3302002).
-
(2003)
Gene Ther
, vol.10
, pp. 1258-1267
-
-
Hoeprich, S.1
Zhou, Q.2
Guo, S.3
Qi, G.4
Wang, Y.5
Guo, P.6
-
46
-
-
79960023588
-
Assembly of therapeutic pRNA- siRNA nanoparticles using bipartite approach
-
doi:10.1038/mt.2011.23
-
Shu Y, Cinier M, Fox SR, Ben-Johnathan N, Guo P. 2011 Assembly of therapeutic pRNA- siRNA nanoparticles using bipartite approach. Mol. Ther. 19, 1304-1311. (doi:10.1038/mt.2011.23).
-
(2011)
Mol. Ther.
, vol.19
, pp. 1304-1311
-
-
Shu, Y.1
Cinier, M.2
Fox, S.R.3
Ben-Johnathan, N.4
Guo, P.5
-
47
-
-
67650664245
-
Fabrication of polyvalent therapeutic RNA nanoparticles for specific delivery of siRNA, ribozyme and drugs to targeted cells for cancer therapy
-
Bethesda, MD, 910 April 2009, Piscataway, NJ: IEEE. (doi:10.1109/LISSA. 2009.4906696)
-
Shu Y, Shu D, Diao Z, Shen G, Guo P. 2009 Fabrication of polyvalent therapeutic RNA nanoparticles for specific delivery of siRNA, ribozyme and drugs to targeted cells for cancer therapy. In Proc. Life Science Systems and Applications Workshop (LiSSA 2009), Bethesda, MD, 910 April 2009, pp 9-12. Piscataway, NJ: IEEE. (doi:10.1109/LISSA.2009.4906696).
-
(2009)
Proc. Life Science Systems and Applications Workshop (LiSSA 2009)
, pp. 9-12
-
-
Shu, Y.1
Shu, D.2
Diao, Z.3
Shen, G.4
Guo, P.5
-
48
-
-
79959937835
-
Pharmacological characterization of chemically synthesized monomeric prna nanoparticles for systemic delivery
-
doi:10.1038/mt.2011.35
-
Abdelmawla S, Guo S, Zhang L, Pulukuri S, Patankar P, Conley P, Trebley J, Guo P, Li QX. 2011 Pharmacological characterization of chemically synthesized monomeric pRNA nanoparticles for systemic delivery. Mol. Ther. 19, 1312-1322. (doi:10.1038/mt.2011.35).
-
(2011)
Mol. Ther.
, vol.19
, pp. 1312-1322
-
-
Abdelmawla, S.1
Guo, S.2
Zhang, L.3
Pulukuri, S.4
Patankar, P.5
Conley, P.6
Trebley, J.7
Guo, P.8
Li, Q.X.9
-
49
-
-
84865421863
-
Current advances in φ29 pRNA biology and its application in drug delivery
-
doi:10.1002/wrna.1111
-
Ye X, Hemida M, Zhang HM, Hanson P, Ye Q, Yang D. 2012 Current advances in φ29 pRNA biology and its application in drug delivery. Wiley Interdiscip. Rev. RNA 3, 469-481. (doi:10.1002/wrna.1111).
-
(2012)
Wiley Interdiscip. Rev. RNA
, vol.3
, pp. 469-481
-
-
Ye, X.1
Hemida, M.2
Zhang, H.M.3
Hanson, P.4
Ye, Q.5
Yang, D.6
-
50
-
-
79958858482
-
Targeted delivery of mutant tolerant anticoxsackievirus artificial microRNAs using folate conjugated bacteriophage φ29 pRNA
-
doi:10.1371/journal.pone.0021215
-
Ye X, Liu Z, Hemida MG, Yang D. 2011 Targeted delivery of mutant tolerant anticoxsackievirus artificial microRNAs using folate conjugated bacteriophage φ29 pRNA. PLoS ONE 6, e21215. (doi:10.1371/journal.pone.0021215).
-
(2011)
PLoS ONE
, vol.6
-
-
Ye, X.1
Liu, Z.2
Hemida, M.G.3
Yang, D.4
-
51
-
-
0038170063
-
Analysis of RNA motifs
-
doi:10.1016/S0959-440X(03)00076-9
-
Leontis NB, Westhof E. 2003 Analysis of RNA motifs. Curr. Opin. Struct. Biol. 13, 300-308. (doi:10.1016/S0959-440X(03)00076-9).
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 300-308
-
-
Leontis, N.B.1
Westhof, E.2
-
52
-
-
29844453234
-
Topology of three-way junctions in folded RNAs
-
doi:10.1261/rna.2208106
-
Lescoute A, Westhof E. 2006 Topology of three-way junctions in folded RNAs. RNA 12, 83-93. (doi:10.1261/rna.2208106).
-
(2006)
RNA
, vol.12
, pp. 83-93
-
-
Lescoute, A.1
Westhof, E.2
-
53
-
-
34250780035
-
RNA structure: Bioinformatic analysis
-
doi:10.1016/j.mib.2007.05.010
-
Jossinet F, Ludwig TE, Westhof E. 2007 RNA structure: bioinformatic analysis. Curr. Opin. Microbiol. 10, 279-285. (doi:10.1016/j.mib.2007.05.010).
-
(2007)
Curr. Opin. Microbiol
, vol.10
, pp. 279-285
-
-
Jossinet, F.1
Ludwig, T.E.2
Westhof, E.3
-
54
-
-
0035863772
-
2001 TectoRNA: Modular assembly units for the construction of RNA nano-objects
-
doi:10.1093/nar/29.2.455
-
Jaeger L, Westhof E, Leontis NB. 2001 TectoRNA: modular assembly units for the construction of RNA nano-objects. Nucleic Acids Res. 29, 455-463. (doi:10.1093/nar/29.2.455).
-
Nucleic Acids Res
, vol.29
, pp. 455-463
-
-
Jaeger, L.1
Westhof, E.2
Leontis, N.B.3
-
55
-
-
33744807172
-
The building blocks andmotifs of RNAarchitecture
-
doi:10.1016/j.sbi.2006.05.009
-
Leontis NB, Lescoute A, Westhof E. 2006 The building blocks andmotifs of RNAarchitecture. Curr. Opin. Struct. Biol. 16, 279-287. (doi:10.1016/j.sbi.2006. 05.009).
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, pp. 279-287
-
-
Leontis, N.B.1
Lescoute, A.2
Westhof, E.3
-
56
-
-
0033150677
-
Structure, folding and catalysis of the small nucleolytic ribozymes
-
doi:10.1016/S0959-440X(99)80044-X
-
Lilley DM. 1999 Structure, folding and catalysis of the small nucleolytic ribozymes. Curr. Opin. Struct. Biol. 9, 330-338. (doi:10.1016/S0959-440X(99) 80044-X).
-
(1999)
Curr.Opin. Struct. Biol.
, vol.9
, pp. 330-338
-
-
Lilley, D.M.1
-
57
-
-
0037315675
-
Structural dynamics of individual holliday junctions
-
doi:10.1038/nsb883
-
McKinney SA, Declais AC, Lilley DMJ, Ha T. 2003 Structural dynamics of individual Holliday junctions. Nat. Struct. Biol. 10, 93-97. (doi:10.1038/nsb883).
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 93-97
-
-
Mckinney, S.A.1
Declais, A.C.2
Lilley, D.M.J.3
Ha, T.4
-
58
-
-
77955118828
-
A structural database for k-turn motifs in RNA
-
doi:10.1261/rna.2207910
-
Schroeder KT, McPhee SA, Ouellet J, Lilley DM. 2010 A structural database for k-turn motifs in RNA. RNA 16, 1463-1468. (doi:10.1261/rna.2207910).
-
(2010)
RNA
, vol.16
, pp. 1463-1468
-
-
Schroeder, K.T.1
Mcphee, S.A.2
Ouellet, J.3
Lilley, D.M.4
-
59
-
-
77956422639
-
In vitro assembly of cubic RNA-based scaffolds designed in silico
-
doi:10.1038/nnano.2010.160
-
Afonin KA, Bindewald E, Yaghoubian AJ, Voss N, Jacovetty E, Shapiro BA, Jaeger L. 2010 In vitro assembly of cubic RNA-based scaffolds designed in silico. Nat. Nanotechnol. 5, 676-682. (doi:10.1038/nnano.2010.160).
-
(2010)
Nat. Nanotechnol.
, vol.5
, pp. 676-682
-
-
Afonin, K.A.1
Bindewald, E.2
Yaghoubian, A.J.3
Voss, N.4
Jacovetty, E.5
Shapiro, B.A.6
Jaeger, L.7
-
60
-
-
65249134554
-
Square-shaped RNAparticles from different RNA folds
-
doi:10.1021/nl900261h
-
Severcan I, Geary C, Verzemnieks E, Chworos A, Jaeger L. 2009 Square-shaped RNAparticles from different RNA folds. Nano Lett. 9, 1270-1277. (doi:10.1021/nl900261h).
-
(2009)
Nano Lett.
, vol.9
, pp. 1270-1277
-
-
Severcan, I.1
Geary, C.2
Verzemnieks, E.3
Chworos, A.4
Jaeger, L.5
-
61
-
-
77956029649
-
A polyhedron made of tRNAs
-
doi:10.1038/nchem.733
-
Severcan I, Geary C, Chworos A, Voss N, Jacovetty E, Jaeger L. 2010 A polyhedron made of tRNAs. Nat. Chem. 2, 772-779. (doi:10.1038/nchem.733).
-
(2010)
Nat. Chem.
, vol.2
, pp. 772-779
-
-
Severcan, I.1
Geary, C.2
Chworos, A.3
Voss, N.4
Jacovetty, E.5
Jaeger, L.6
-
62
-
-
10844257474
-
Building programmable jigsaw puzzles with RNA
-
doi:10.1126/science.1104686
-
Chworos A, Severcan I, Koyfman AY, Weinkam P, Oroudjev E, Hansma HG, Jaeger L. 2004 Building programmable jigsaw puzzles with RNA. Science 306, 2068-2072. (doi:10.1126/science.1104686).
-
(2004)
Science
, vol.306
, pp. 2068-2072
-
-
Chworos, A.1
Severcan, I.2
Koyfman, A.Y.3
Weinkam, P.4
Oroudjev, E.5
Hansma, H.G.6
Jaeger, L.7
-
63
-
-
0034679465
-
Tecto-RNA: One dimensional self-assembly through tertiary interactions
-
doi:10.1002/1521-3773(20000717)39: 14<2521::AID-ANIE2521>3.0.CO;2-P
-
Jaeger L, Leontis NB. 2000 Tecto-RNA: one dimensional self-assembly through tertiary interactions. Angew. Chem. Int. Ed. Engl. 39, 2521-2524. (doi:10.1002/1521-3773(20000717)39: 14<2521::AID-ANIE2521>3.0.CO;2-P).
-
(2000)
Angew. Chem. Int. Ed. Engl.
, vol.39
, pp. 2521-2524
-
-
Jaeger, L.1
Leontis, N.B.2
-
64
-
-
1842502985
-
Characterization of tectorna assembly with cationic conjugated polymers
-
doi:10.1021/ja031552v
-
Liu B, Baudrey S, Jaeger L, Bazan GC. 2004 Characterization of tectoRNA assembly with cationic conjugated polymers. J. Am. Chem. Soc. 126, 4076-4077. (doi:10.1021/ja031552v).
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 4076-4077
-
-
Liu, B.1
Baudrey, S.2
Jaeger, L.3
Bazan, G.C.4
-
65
-
-
78649986714
-
Promoting rna helical stacking via a-minor junctions
-
doi:10.1093/nar/gkq748
-
Geary C, Chworos A, Jaeger L. 2010 Promoting RNA helical stacking via A-minor junctions. Nucleic Acids Res. 39, 1066-1080. (doi:10.1093/nar/gkq748).
-
(2010)
Nucleic Acids Res
, vol.39
, pp. 1066-1080
-
-
Geary, C.1
Chworos, A.2
Jaeger, L.3
-
66
-
-
34548147103
-
Computational design of an RNA hexagonal nanoring and an RNA nanotube
-
doi:10.1021/nl070984r
-
Yingling YG, Shapiro BA. 2007 Computational design of an RNA hexagonal nanoring and an RNA nanotube. Nano Lett. 7, 2328-2334. (doi:10.1021/nl070984r).
-
(2007)
Nano Lett.
, vol.7
, pp. 2328-2334
-
-
Yingling, Y.G.1
Shapiro, B.A.2
-
67
-
-
53549097335
-
Computational strategies for the automated design of RNA nanoscale structures from building blocks using NanoTiler
-
doi:10.1016/j.jmgm.2008.05.004
-
Bindewald E, Grunewald C, Boyle B, O'Connor M, Shapiro BA. 2008 Computational strategies for the automated design of RNA nanoscale structures from building blocks using NanoTiler. J. Mol. Graph. Model. 27, 299-308. (doi:10.1016/j.jmgm.2008.05.004).
-
(2008)
J. Mol. Graph. Model.
, vol.27
, pp. 299-308
-
-
Bindewald, E.1
Grunewald, C.2
Boyle, B.3
O'connor, M.4
Shapiro, B.A.5
-
68
-
-
79851470025
-
Selfassembling RNA nanorings based on RNAI/II inverse kissing complexes
-
doi:10.1021/nl104271s
-
Grabow WW, Zakrevsky P, Afonin KA, Chworos A, Shapiro BA, Jaeger L. 2011 Selfassembling RNA nanorings based on RNAI/II inverse kissing complexes. Nano Lett. 11, 878-887. (doi:10.1021/nl104271s).
-
(2011)
Nano Lett.
, vol.11
, pp. 878-887
-
-
Grabow, W.W.1
Zakrevsky, P.2
Afonin, K.A.3
Chworos, A.4
Shapiro, B.A.5
Jaeger, L.6
-
69
-
-
58149280837
-
Protocols for the in silico design of RNA nanostructures
-
doi:10.1007/978-1-59745-480-3-7
-
Shapiro BA, Bindewald E, Kasprzak W, Yingling Y. 2008 Protocols for the in silico design of RNA nanostructures. Methods Mol. Biol. 474, 93-115. (doi:10.1007/978-1-59745-480-3-7).
-
(2008)
Methods Mol. Biol.
, vol.474
, pp. 93-115
-
-
Shapiro, B.A.1
Bindewald, E.2
Kasprzak, W.3
Yingling, Y.4
-
70
-
-
4644256647
-
De novo synthesis and development of an RNA enzyme
-
USA, (doi:10.1073/pnas.0405886101
-
Ikawa Y, Tsuda K, Matsumura S, Inoue T. 2004 De novo synthesis and development of an RNA enzyme. Proc. Natl Acad. Sci. USA 101, 13 750-13 755. (doi:10.1073/pnas.0405886101).
-
(2004)
Proc. Natl Acad. Sci.
, vol.101
, pp. 13750-13755
-
-
Ikawa, Y.1
Tsuda, K.2
Matsumura, S.3
Inoue, T.4
-
71
-
-
69249217639
-
Coordinated control of a designed trans-acting ligase ribozyme by a loop-receptor interaction
-
doi:10.1016/j.febslet.2009.07.036
-
Matsumura S, Ohmori R, Saito H, Ikawa Y, Inoue T. 2009 Coordinated control of a designed trans-acting ligase ribozyme by a loop-receptor interaction. FEBS Lett. 583, 2819-2826. (doi:10.1016/j.febslet.2009.07.036).
-
(2009)
FEBS Lett.
, vol.583
, pp. 2819-2826
-
-
Matsumura, S.1
Ohmori, R.2
Saito, H.3
Ikawa, Y.4
Inoue, T.5
-
72
-
-
33645454965
-
An efficient thermally induced RNA conformational switch as a framework for the functionalization of RNA nanostructures
-
doi:10.1021/ja0572093
-
Li X, Horiya S, Harada K. 2006 An efficient thermally induced RNA conformational switch as a framework for the functionalization of RNA nanostructures. J. Am. Chem. Soc. 128, 4035-4040. (doi:10.1021/ja0572093).
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 4035-4040
-
-
Li, X.1
Horiya, S.2
Harada, K.3
-
73
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
doi:10.1017/S1355838201002515
-
Leontis NB, Westhof E. 2001 Geometric nomenclature and classification of RNA base pairs. RNA 7, 499-512. (doi:10.1017/S1355838201002515).
-
(2001)
RNA
, vol.7
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
-
74
-
-
0032300804
-
Conserved geometrical base-pairing patterns in RNA
-
doi:10.1017/S0033583599003479
-
Leontis NB, Westhof E. 1998 Conserved geometrical base-pairing patterns in RNA. Q. Rev. Biophys. 31, 399-455. (doi:10.1017/S0033583599003479).
-
(1998)
Q. Rev. Biophys
, vol.31
, pp. 399-455
-
-
Leontis, N.B.1
Westhof, E.2
-
75
-
-
0031009237
-
Hierarchy and dynamics of RNA folding
-
doi:10.1146/annurev.biophys.26.1.113
-
Brion P, Westhof E. 1997 Hierarchy and dynamics of RNA folding. Annu. Rev. Biophys. Biomol. Struct. 26, 113-137. (doi:10.1146/annurev.biophys.26.1. 113).
-
(1997)
Annu. Rev. Biophys. Biomol. Struct.
, vol.26
, pp. 113-137
-
-
Brion, P.1
Westhof, E.2
-
76
-
-
0002664413
-
Rna tectonics: Towards RNA design
-
doi:10.1016/S1359-0278(96)00037-5
-
Westhof E, Masquida B, Jaeger L. 1996 RNA tectonics: towards RNA design. Fold. Des. 1, R78-R88. (doi:10.1016/S1359-0278(96)00037-5).
-
(1996)
Fold. Des.
, vol.1
-
-
Westhof, E.1
Masquida, B.2
Jaeger, L.3
-
77
-
-
0027213193
-
On the stability of nucleic acid structures in solution: Enthalpy-entropy compensations, internal rotations and reversibility
-
doi:10.1093/nar/21.9.2051
-
Searle MS, Williams DH. 1993 On the stability of nucleic acid structures in solution: enthalpy-entropy compensations, internal rotations and reversibility. Nucleic Acids Res. 21, 2051-2056. (doi:10.1093/nar/21.9.2051).
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 2051-2056
-
-
Searle, M.S.1
Williams, D.H.2
-
78
-
-
0029134549
-
Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes
-
doi:10.1021/bi00035a029
-
Sugimoto N, Nakano S, Katoh M, Matsumura A, Nakamuta H, Ohmichi T, Yoneyama M, Sasaki M. 1995 Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes. Biochemistry 34, 11 211-11 216. (doi:10.1021/ bi00035a029).
-
(1995)
Biochemistry
, vol.34
, pp. 11211-11216
-
-
Sugimoto, N.1
Nakano, S.2
Katoh, M.3
Matsumura, A.4
Nakamuta, H.5
Ohmichi, T.6
Yoneyama, M.7
Sasaki, M.8
-
79
-
-
0000075467
-
Improved free-energy parameters for predictions of RNA duplex stability
-
USA, (doi:10.1073/pnas.83.24.9373
-
Freier SM, Kierzek R, Jaeger JA, Sugimoto N, Caruthers MH, Neilson T, Turner DH. 1986 Improved free-energy parameters for predictions of RNA duplex stability. Proc. Natl Acad. Sci. USA 83, 9373-9377. (doi:10.1073/pnas.83.24. 9373).
-
(1986)
Proc. Natl Acad. Sci.
, vol.83
, pp. 9373-9377
-
-
Freier, S.M.1
Kierzek, R.2
Jaeger, J.A.3
Sugimoto, N.4
Caruthers, M.H.5
Neilson, T.6
Turner, D.H.7
-
80
-
-
77955797425
-
Inducible gene and shRNA expression in resident hematopoietic stem cells in vivo
-
doi:10.1002/stem.460
-
Laurenti E et al. 2010 Inducible gene and shRNA expression in resident hematopoietic stem cells in vivo. Stem Cells 28, 1390-1398. (doi:10.1002/stem. 460).
-
(2010)
Stem Cells
, vol.28
, pp. 1390-1398
-
-
Laurenti, E.1
-
81
-
-
0028168585
-
Characterization of a 'kissing' hairpin complex derived from the human immunodeficiency virus genome
-
USA, (doi:10.1073/pnas.91.18.8705
-
Chang KY, Tinoco Jr I. 1994 Characterization of a 'kissing' hairpin complex derived from the human immunodeficiency virus genome. Proc. Natl Acad. Sci. USA 91, 8705-8709. (doi:10.1073/pnas.91.18.8705).
-
(1994)
Proc. Natl Acad. Sci.
, vol.91
, pp. 8705-8709
-
-
Chang, K.Y.1
Tinoco, J.I.2
-
82
-
-
38549083634
-
Rnajunction: A database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
-
doi:10.1093/nar/gkm842
-
Bindewald E, Hayes R, Yingling YG, Kasprzak W, Shapiro BA. 2008 RNAJunction: A database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign. Nucleic Acids Res. 36, D392-D397. (doi:10.1093/nar/gkm842).
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Bindewald, E.1
Hayes, R.2
Yingling, Y.G.3
Kasprzak, W.4
Shapiro, B.A.5
-
83
-
-
1042278144
-
Mechanism of dimerization of bicoid mRNA: Initiation and stabilization
-
doi:10.1074/jbc.M306511200
-
Wagner C, Ehresmann C, Ehresmann B, Brunel C. 2004 Mechanism of dimerization of bicoid mRNA: initiation and stabilization. J. Biol. Chem. 279, 4560-4569. (doi:10.1074/jbc.M306511200).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 4560-4569
-
-
Wagner, C.1
Ehresmann, C.2
Ehresmann, B.3
Brunel, C.4
-
84
-
-
0034625371
-
A dimer as a building block in assembling RNA: A hexamer that gears bacterial virus φ29 DNA-translocating machinery
-
doi:10.1074/jbc.M909662199
-
Chen C, Sheng S, Shao Z, Guo P. 2000 A dimer as a building block in assembling RNA: A hexamer that gears bacterial virus φ29 DNA-translocating machinery. J. Biol. Chem. 275, 17 510-17 516. (doi:10.1074/jbc.M909662199).
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 17510-17516
-
-
Chen, C.1
Sheng, S.2
Shao, Z.3
Guo, P.4
-
85
-
-
0023225629
-
A small viral RNA is required for in vitro packaging of bacteriophage φ29 DNA
-
doi:10.1126/science.3107124
-
Guo P, Erickson S, Anderson D. 1987 A small viral RNA is required for in vitro packaging of bacteriophage φ29 DNA. Science 236, 690-694. (doi:10.1126/science.3107124).
-
(1987)
Science
, vol.236
, pp. 690-694
-
-
Guo, P.1
Erickson, S.2
Anderson, D.3
-
86
-
-
84870518918
-
Fluorogenic RNA nanoparticles for monitoring RNA folding and degradation in real time in living cells
-
Reif R, Haque F, Guo P. 2013 Fluorogenic RNA nanoparticles for monitoring RNA folding and degradation in real time in living cells. Nucleic Acid Ther. 22, 428-437.
-
(2013)
Nucleic Acid Ther.
, vol.22
, pp. 428-437
-
-
Reif, R.1
Haque, F.2
Guo, P.3
-
87
-
-
84878025754
-
Fabrication of 14 different RNA nanoparticles for specific tumor targeting without accumulation in normal organs
-
doi:10.1261/rna.037002.112
-
Shu Y, Haque F, Shu D, Li W, Zhu Z, Kotb M, Lyubchenko Y, Guo P. 2012 Fabrication of 14 different RNA nanoparticles for specific tumor targeting without accumulation in normal organs. RNA 19, 767-777. (doi:10.1261/rna.037002. 112).
-
(2012)
RNA
, vol.19
, pp. 767-777
-
-
Shu, Y.1
Haque, F.2
Shu, D.3
Li, W.4
Zhu, Z.5
Kotb, M.6
Lyubchenko, Y.7
Guo, P.8
-
88
-
-
84879785627
-
The ATPase of the φ29 DNA packaging motor is a member of the hexameric AAA+ superfamily
-
Schwartz C, De Donatis GM, Fang H, Guo P. 2013 The ATPase of the φ29 DNA packaging motor is a member of the hexameric AAA+ superfamily. Virology 443, 20-27.
-
(2013)
Virology
, vol.443
, pp. 20-27
-
-
Schwartz, C.1
De Donatis, G.M.2
Fang, H.3
Guo, P.4
-
89
-
-
52949116414
-
Assembling materials with DNA as the guide
-
doi:10.1126/science.1154533
-
Aldaye FA, Palmer AL, Sleiman HF. 2008 Assembling materials with DNA as the guide. Science 321, 1795-1799. (doi:10.1126/science.1154533).
-
(2008)
Science
, vol.321
, pp. 1795-1799
-
-
Aldaye, F.A.1
Palmer, A.L.2
Sleiman, H.F.3
-
90
-
-
0141534348
-
DNA-templated self-assembly of protein arrays and highly conductive nanowires
-
Yan H, Park SH, Finkelstein G, Reif JH, LaBean TH. 2003 DNA-templated self-assembly of protein arrays and highly conductive nanowires. Science 301, 1882-1884.
-
(2003)
Science
, vol.301
, pp. 1882-1884
-
-
Yan, H.1
Park, S.H.2
Finkelstein, G.3
Reif, J.H.4
Labean, T.H.5
-
91
-
-
78649985789
-
The emerging field of RNA nanotechnology
-
doi:10.1038/nnano.2010.231
-
Guo P. 2010 The emerging field of RNA nanotechnology. Nat. Nanotechnol. 5, 833-842. (doi:10.1038/nnano.2010.231).
-
(2010)
Nat. Nanotechnol.
, vol.5
, pp. 833-842
-
-
Guo, P.1
-
92
-
-
13444252847
-
Rfam: Annotating non-coding RNAs in complete genomes
-
doi:10.1093/nar/gki081
-
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. 2005 Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res 33, D121-D124. (doi:10.1093/nar/gki081).
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Griffiths-Jones, S.1
Moxon, S.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
Bateman, A.6
-
93
-
-
55549130811
-
Analysis and classification of RNA tertiary structures
-
doi:10.1261/rna.853208
-
Abraham M, Dror O, Nussinov R, Wolfson HJ. 2008 Analysis and classification of RNA tertiary structures. RNA 14, 2274-2289. (doi:10.1261/rna.853208).
-
(2008)
RNA
, vol.14
, pp. 2274-2289
-
-
Abraham, M.1
Dror, O.2
Nussinov, R.3
Wolfson, H.J.4
-
94
-
-
0032981057
-
Sequence requirement for hand-in-hand interaction in formation of pRNA dimers and hexamers to gear φ29 DNA translocation motor
-
doi:10.1017/S1355838299990350
-
Chen C, Zhang C, Guo P. 1999 Sequence requirement for hand-in-hand interaction in formation of pRNA dimers and hexamers to gear φ29 DNA translocation motor. RNA 5, 805-818. (doi:10.1017/S1355838299990350).
-
(1999)
RNA
, vol.5
, pp. 805-818
-
-
Chen, C.1
Zhang, C.2
Guo, P.3
-
95
-
-
77955866886
-
Assembly mechanism of the sixty-subunit nanoparticles via interaction of RNA with the reengineered protein connector of φ29 DNA-packaging motor
-
doi:10.1021/nn100158k
-
Xiao F, Demeler B, Guo P. 2010 Assembly mechanism of the sixty-subunit nanoparticles via interaction of RNA with the reengineered protein connector of φ29 DNA-packaging motor. ACS Nano 4, 3293-3301. (doi:10.1021/nn100158k).
-
(2010)
ACS Nano
, vol.4
, pp. 3293-3301
-
-
Xiao, F.1
Demeler, B.2
Guo, P.3
-
96
-
-
33846551354
-
Counting of six pRNAs of φ29 DNA-packaging motor with customized single molecule dual-view system
-
doi:10.1038/sj.emboj.7601506
-
Shu D, Zhang H, Jin J, Guo P. 2007 Counting of six pRNAs of φ29 DNA-packaging motor with customized single molecule dual-view system. EMBO J. 26, 527-537. (doi:10.1038/sj.emboj.7601506).
-
(2007)
EMBO J.
, vol.26
, pp. 527-537
-
-
Shu, D.1
Zhang, H.2
Jin, J.3
Guo, P.4
-
97
-
-
0025074907
-
In vitro selection of RNAmolecules that bind specific ligands
-
doi:10.1038/346818a0
-
Ellington AD, Szostak JW. 1990 In vitro selection of RNAmolecules that bind specific ligands. Nature 346, 818-822. (doi:10.1038/346818a0).
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
98
-
-
0025194307
-
Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage t4 DNA ploymerase
-
doi:10.1126/science. 2200121
-
Tuerk C, Gold L. 1990 Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA ploymerase. Science 249, 505-510. (doi:10.1126/science. 2200121).
-
(1990)
Science
, vol.249
, pp. 505-510
-
-
Tuerk, C.1
Gold, L.2
-
99
-
-
1542345305
-
Tensegrity: Construction of rigid DNA triangles with flexible four-arm DNA junctions
-
doi:10.1021/ja031754r
-
Liu D, Wang M, Deng Z, Walulu R, Mao C. 2004 Tensegrity: construction of rigid DNA triangles with flexible four-arm DNA junctions. J. Am. Chem. Soc. 126, 2324-2325. (doi:10.1021/ja031754r).
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 2324-2325
-
-
Liu, D.1
Wang, M.2
Deng, Z.3
Walulu, R.4
Mao, C.5
-
100
-
-
14044251445
-
Algorithmic self-assembly of DNA sierpinski triangles
-
doi:10.1371/journal.pbio.0020424
-
Rothemund PW, Papadakis N, Winfree E. 2004 Algorithmic self-assembly of DNA Sierpinski triangles. PLoS Biol. 2, e424. (doi:10.1371/journal.pbio.0020424) .
-
(2004)
PLoS Biol.
, vol.2
-
-
Rothemund, P.W.1
Papadakis, N.2
Winfree, E.3
-
101
-
-
18144391950
-
Three-helix bundle DNA tiles self-assemble into 2D lattice or 1D templates for silver nanowires
-
doi:10.1021/nl050108i
-
Park SH, Barish R, Li H, Reif JH, Finkelstein G, Yan H, LaBean TH. 2005 Three-helix bundle DNA tiles self-assemble into 2D lattice or 1D templates for silver nanowires. Nano Lett. 5, 693-696. (doi:10.1021/nl050108i).
-
(2005)
Nano, Lett.
, vol.5
, pp. 693-696
-
-
Park, S.H.1
Barish, R.2
Li, H.3
Reif, J.H.4
Finkelstein, G.5
Yan, H.6
Labean, T.H.7
-
102
-
-
44449126536
-
A polycatenated DNA scaffold for the one-step assembly of hierarchical nanostructures
-
USA, (doi:10.1073/pnas.0800723105
-
Weizmann Y, Braunschweig AB, Wilner OI, Cheglakov Z, Willner I. 2008 A polycatenated DNA scaffold for the one-step assembly of hierarchical nanostructures. Proc. Natl Acad. Sci. USA 105, 5289-5294. (doi:10.1073/pnas. 0800723105).
-
(2008)
Proc. Natl Acad. Sci.
, vol.105
, pp. 5289-5294
-
-
Weizmann, Y.1
Braunschweig, A.B.2
Wilner, O.I.3
Cheglakov, Z.4
Willner, I.5
-
103
-
-
33645028600
-
Folding DNA to create nanoscale shapes and patterns
-
doi:10.1038/nature04586
-
Rothemund PWK. 2006 Folding DNA to create nanoscale shapes and patterns. Nature 440, 297-302. (doi:10.1038/nature04586).
-
(2006)
Nature
, vol.440
, pp. 297-302
-
-
Rothemund, P.W.K.1
-
104
-
-
65549170920
-
Self-assembly of a nanoscale DNA box with a controllable lid
-
doi:10.1038/nature07971
-
Andersen ES et al. 2009 Self-assembly of a nanoscale DNA box with a controllable lid. Nature 459, 73-76. (doi:10.1038/nature07971).
-
(2009)
Nature
, vol.459
, pp. 73-76
-
-
Andersen, E.S.1
-
105
-
-
38149040049
-
Self-assembled water-soluble nucleic acid probe tiles for label-free RNA hybridization assays
-
doi:10.1126/science.1150082
-
Ke YG, Lindsay S, Chang Y, Liu Y, Yan H. 2008 Self-assembled water-soluble nucleic acid probe tiles for label-free RNA hybridization assays. Science 319, 180-183. (doi:10.1126/science.1150082).
-
(2008)
Science
, vol.319
, pp. 180-183
-
-
Ke, Y.G.1
Lindsay, S.2
Chang, Y.3
Liu, Y.4
Yan, H.5
-
106
-
-
34249856814
-
DNA-nanotube-induced alignment of membrane proteins for NMR structure determination
-
USA, (doi:10.1073/pnas.0700930104
-
Douglas SM, Chou JJ, Shih WM. 2007 DNA-nanotube-induced alignment of membrane proteins for NMR structure determination. Proc. Natl Acad. Sci. USA 104, 6644-6648. (doi:10.1073/pnas.0700930104).
-
(2007)
Proc. Natl Acad. Sci.
, vol.104
, pp. 6644-6648
-
-
Douglas, S.M.1
Chou, J.J.2
Shih, W.M.3
-
107
-
-
25144507689
-
DNA tube structures controlled by a fourway- branched DNA connector
-
doi:10.1002/anie.200501034
-
Endo M, Seeman NC, Majima T. 2005 DNA tube structures controlled by a fourway- branched DNA connector. Angew. Chem. Int. Ed. Engl. 44, 6074-6077. (doi:10.1002/anie.200501034).
-
(2005)
Angew. Chem. Int. Ed. Engl.
, vol.44
, pp. 6074-6077
-
-
Endo, M.1
Seeman, N.C.2
Majima, T.3
-
108
-
-
0037458821
-
A discrete self-assembled metal array in artificial DNA
-
doi:10.1126/science.1080587
-
Tanaka K, Tengeiji A, Kato T, Toyama N, Shionoya M. 2003 A discrete self-assembled metal array in artificial DNA. Science 299, 1212-1213. (doi:10.1126/science.1080587).
-
(2003)
Science
, vol.299
, pp. 1212-1213
-
-
Tanaka, K.1
Tengeiji, A.2
Kato, T.3
Toyama, N.4
Shionoya, M.5
-
109
-
-
35948960658
-
Modular access to structurally switchable 3D discrete DNA assemblies
-
doi:10.1021/ja075966q
-
Aldaye FA, Sleiman HF. 2007 Modular access to structurally switchable 3D discrete DNA assemblies. J. Am. Chem. Soc. 129, 13 376-13 377. (doi:10.1021/ja075966q).
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 13376-13377
-
-
Aldaye, F.A.1
Sleiman, H.F.2
-
110
-
-
0034632783
-
A DNA-fuelledmolecular machine made of DNA
-
doi:10.1038/35020524
-
Yurke B, Turberfield AJ, Mills Jr AP, Simmel FC, Neumann JL. 2000 A DNA-fuelledmolecular machine made of DNA. Nature 406, 605-608. (doi:10.1038/35020524).
-
(2000)
Nature
, vol.406
, pp. 605-608
-
-
Yurke, B.1
Turberfield, A.J.2
Mills, J.A.P.3
Simmel, F.C.4
Neumann, J.L.5
-
111
-
-
77957915679
-
Folding and cutting DNA into reconfigurable topological nanostructures
-
doi:10.1038/nnano.2010.193
-
Han D, Pal S, Liu Y, Yan H. 2010 Folding and cutting DNA into reconfigurable topological nanostructures. Nat. Nanotechnol. 5, 712-717. (doi:10.1038/nnano.2010.193).
-
(2010)
Nat. Nanotechnol.
, vol.5
, pp. 712-717
-
-
Han, D.1
Pal, S.2
Liu, Y.3
Yan, H.4
-
112
-
-
77951950408
-
Programmed-assembly system using DNA jigsaw pieces
-
Endo M, Sugita T, Katsuda Y, Hidaka K, Sugiyama H. 2010 Programmed-assembly system using DNA jigsaw pieces. Chemistry 16, 5362-5368.
-
(2010)
Chemistry
, vol.16
, pp. 5362-5368
-
-
Endo, M.1
Sugita, T.2
Katsuda, Y.3
Hidaka, K.4
Sugiyama, H.5
-
113
-
-
68449088261
-
Folding DNA into twisted and curved nanoscale shapes
-
doi:10.1126/science.1174251
-
Dietz H, Douglas SM, Shih WM. 2009 Folding DNA into twisted and curved nanoscale shapes. Science 325, 725-730. (doi:10.1126/science.1174251).
-
(2009)
Science
, vol.325
, pp. 725-730
-
-
Dietz, H.1
Douglas, S.M.2
Shih, W.M.3
-
114
-
-
72249119445
-
A nanostructure made of a bacterial noncoding RNA
-
doi:10.1021/ja906076e
-
Cayrol B, Nogues C, Dawid A, Sagi I, Silberzan P, Isambert H. 2009 A nanostructure made of a bacterial noncoding RNA. J. Am. Chem. Soc. 131, 17 270-17 276. (doi:10.1021/ja906076e).
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 17270-17276
-
-
Cayrol, B.1
Nogues, C.2
Dawid, A.3
Sagi, I.4
Silberzan, P.5
Isambert, H.6
-
115
-
-
64349099137
-
Designer DNA nanoarchitectures
-
doi:10.1021/bi802324w
-
Lin C, Liu Y, Yan H. 2009 Designer DNA nanoarchitectures. Biochemistry 48, 1663-1674. (doi:10.1021/bi802324w).
-
(2009)
Biochemistry
, vol.48
, pp. 1663-1674
-
-
Lin, C.1
Liu, Y.2
Yan, H.3
-
116
-
-
77953645331
-
Nanomaterials based on DNA
-
doi:10.1146/annurev-biochem-060308-102244
-
Seeman NC. 2010 Nanomaterials based on DNA. Annu. Rev. Biochem. 79, 65-87. (doi:10.1146/annurev-biochem-060308-102244).
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 65-87
-
-
Seeman, N.C.1
-
117
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
doi:10.1093/nar/gkg595
-
Zuker M. 2003 Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415. (doi:10.1093/nar/gkg595).
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
118
-
-
84934438960
-
UNAfold: Software for nucleic acid folding and hybridization
-
doi:10.1007/978-1-60327-429-6-1
-
Markham NR, ZukerM. 2008 UNAFold: software for nucleic acid folding and hybridization. Methods Mol. Biol. 453, 3-31. (doi:10.1007/978-1-60327-429-6-1).
-
(2008)
Methods Mol. Biol.
, vol.453
, pp. 3-31
-
-
Markham, N.R.1
Zukerm2
-
119
-
-
78650001716
-
Computational design strategies for RNA nanostructures
-
Shapiro BA. 2009 Computational design strategies for RNA nanostructures. J. Biomol. Struct. Dyn. 26, 820.
-
(2009)
J. Biomol.Struct. Dyn.
, vol.26
, pp. 820
-
-
Shapiro, B.A.1
-
120
-
-
43749124906
-
RNA2D3D: A program for generating, viewing, and comparing 3-dimensional models of RNA
-
doi:10.1080/07391102.2008.10531240
-
Martinez HM, Maizel JV, Shapiro BA. 2008 RNA2D3D: A program for generating, viewing, and comparing 3-dimensional models of RNA. J. Biomol. Struct. Dyn. 25, 669-683. (doi:10.1080/07391102.2008.10531240).
-
(2008)
J. Biomol. Struct. Dyn.
, vol.25
, pp. 669-683
-
-
Martinez, H.M.1
Maizel, J.V.2
Shapiro, B.A.3
-
121
-
-
79958738880
-
Use of RNA structure flexibility data in nanostructure modeling
-
doi:10.1016/j.ymeth. 2010.12.010
-
Kasprzak W, Bindewald E, Kim TJ, Jaeger L, Shapiro BA. 2010 Use of RNA structure flexibility data in nanostructure modeling. Methods 54, 239-250. (doi:10.1016/j.ymeth. 2010.12.010).
-
(2010)
Methods
, vol.54
, pp. 239-250
-
-
Kasprzak, W.1
Bindewald, E.2
Kim, T.J.3
Jaeger, L.4
Shapiro, B.A.5
-
122
-
-
70350741850
-
Molecular dynamics study of the RNA ring nanostructure: A phenomenon of self-stabilization
-
doi:10.1088/1478- 3975/6/4/046003
-
Paliy M, Melnik R, Shapiro BA. 2009 Molecular dynamics study of the RNA ring nanostructure: A phenomenon of self-stabilization. Phys. Biol. 6, 046003. (doi:10.1088/1478- 3975/6/4/046003).
-
(2009)
Phys. Biol.
, vol.6
, pp. 046003
-
-
Paliy, M.1
Melnik, R.2
Shapiro, B.A.3
-
123
-
-
36448954303
-
FR3D: Finding local and composite recurrent structural motifs in RNA 3D structures
-
doi:10.1007/s00285-007-0110-x
-
Sarver M, Zirbel CL, Stombaugh J, Mokdad A, Leontis NB. 2008 FR3D: finding local and composite recurrent structural motifs in RNA 3D structures. J. Math. Biol. 56, 215-252. (doi:10.1007/s00285-007-0110-x).
-
(2008)
J. Math. Biol.
, vol.56
, pp. 215-252
-
-
Sarver, M.1
Zirbel, C.L.2
Stombaugh, J.3
Mokdad, A.4
Leontis, N.B.5
-
124
-
-
84858239340
-
Ribozymes, catalytically active RNA molecules: Introduction
-
doi:10.1007/978-1-61779-545-9-1
-
Westhof E. 2012 Ribozymes, catalytically active RNA molecules: introduction. Methods Mol. Biol. 848, 1-4. (doi:10.1007/978-1-61779-545-9-1).
-
(2012)
Methods Mol. Biol.
, vol.848
, pp. 1-4
-
-
Westhof, E.1
-
125
-
-
78649547538
-
Dual-channel single-molecule fluorescence resonance energy transfer to establish distance parameters for RNA nanoparticles
-
Shu D, Zhang H, Petrenko R, Meller J, Guo P. 2010 Dual-channel single-molecule fluorescence resonance energy transfer to establish distance parameters for RNA nanoparticles. ACS Nano 4, 6843-6853.
-
(2010)
ACS Nano
, vol.4
, pp. 6843-6853
-
-
Shu, D.1
Zhang, H.2
Petrenko, R.3
Meller, J.4
Guo, P.5
-
126
-
-
80455154991
-
Thermodynamically stable RNA threeway junction for constructing multifunctional nanoparticles for delivery of therapeutics
-
doi:10.1038/nnano.2011.105
-
Shu D, Shu Y, Haque F, Abdelmawla S, Guo P. 2011 Thermodynamically stable RNA threeway junction for constructing multifunctional nanoparticles for delivery of therapeutics. Nat. Nanotechnol. 6, 658-667. (doi:10.1038/nnano.2011. 105).
-
(2011)
Nat. Nanotechnol.
, vol.6
, pp. 658-667
-
-
Shu, D.1
Shu, Y.2
Haque, F.3
Abdelmawla, S.4
Guo, P.5
-
127
-
-
70349778813
-
RNA-based computation in live cells
-
doi:10.1016/j.copbio.2009.08.002
-
Benenson Y. 2009 RNA-based computation in live cells. Curr. Opin. Biotechnol. 20, 471-478. (doi:10.1016/j.copbio.2009.08.002).
-
(2009)
Curr. Opin. Biotechnol.
, vol.20
, pp. 471-478
-
-
Benenson, Y.1
-
128
-
-
41349118107
-
Complex riboswitches
-
doi:10.1126/science. 1152621
-
Breaker RR. 2008 Complex riboswitches. Science 319, 1795-1797. (doi:10.1126/science. 1152621).
-
(2008)
Science
, vol.319
, pp. 1795-1797
-
-
Breaker, R.R.1
-
129
-
-
54249113318
-
Higher-order cellular information processing with synthetic RNA devices
-
doi:10.1126/science.1160311
-
WinMN, Smolke CD. 2008 Higher-order cellular information processing with synthetic RNA devices. Science 322, 456-460. (doi:10.1126/science.1160311).
-
(2008)
Science
, vol.322
, pp. 456-460
-
-
Win, M.N.1
Smolke, C.D.2
-
130
-
-
15944402920
-
Small regulatory RNAs in mammals
-
doi:10.1093/hmg/ddi101
-
Mattick JS, Makunin IV. 2005 Small regulatory RNAs in mammals. Hum. Mol. Genet. 14, R121-R132. (doi:10.1093/hmg/ddi101).
-
(2005)
Hum. Mol. Genet.
, vol.14
-
-
Mattick, J.S.1
Makunin, I.V.2
-
131
-
-
80053019485
-
Regulation by small RNAs in bacteria: Expanding frontiers
-
doi:10.1016/j.molcel.2011.08.022
-
Storz G, Vogel J, Wassarman KM. 2011 Regulation by small RNAs in bacteria: expanding frontiers. Mol. Cell 43, 880-891. (doi:10.1016/j.molcel. 2011.08.022).
-
(2011)
Mol. Cell
, vol.43
, pp. 880-891
-
-
Storz, G.1
Vogel, J.2
Wassarman, K.M.3
-
132
-
-
34447310821
-
A universal RNAi-based logic evaluator that operates in mammalian cells
-
doi:10.1038/nbt1307
-
Rinaudo K, Bleris L, Maddamsetti R, Subramanian S, Weiss R, Benenson Y. 2007 A universal RNAi-based logic evaluator that operates in mammalian cells. Nat. Biotechnol. 25, 795-801. (doi:10.1038/nbt1307).
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 795-801
-
-
Rinaudo, K.1
Bleris, L.2
Maddamsetti, R.3
Subramanian, S.4
Weiss, R.5
Benenson, Y.6
-
133
-
-
0036469778
-
Engineered allosteric ribozymes as biosensor components
-
doi:10.1016/S0958-1669(02)00281-1
-
Breaker RR. 2002 Engineered allosteric ribozymes as biosensor components. Curr. Opin. Biotechnol. 13, 31-39. (doi:10.1016/S0958-1669(02)00281-1).
-
(2002)
Curr. Opin., Biotechnol
, vol.13
, pp. 31-39
-
-
Breaker, R.R.1
-
134
-
-
85011936087
-
Engineered riboswitches: Overview, problems and trends
-
doi:10.4161/rna.5.1.5955
-
Suess B, Weigand JE. 2008 Engineered riboswitches: overview, problems and trends. RNA Biol. 5, 24-29. (doi:10.4161/rna.5.1.5955).
-
(2008)
RNA Biol.
, vol.5
, pp. 24-29
-
-
Suess, B.1
Weigand, J.E.2
-
135
-
-
84863454666
-
Programmable single-cell mammalian biocomputers
-
doi:10.1038/nature11149
-
Auslander S, Auslander D, Muller M, Wieland M, Fussenegger M. 2012 Programmable single-cell mammalian biocomputers. Nature 487, 123-127. (doi:10.1038/nature11149).
-
(2012)
Nature
, vol.487
, pp. 123-127
-
-
Auslander, S.1
Auslander, D.2
Muller, M.3
Wieland, M.4
Fussenegger, M.5
-
136
-
-
77949405661
-
Synthesizing a novel genetic sequential logic circuit: A push-on push-off switch
-
doi:10.1038/msb.2010.2
-
Lou C et al. 2010 Synthesizing a novel genetic sequential logic circuit: A push-on push-off switch. Mol. Syst. Biol. 6, 350. (doi:10.1038/msb.2010.2).
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 350
-
-
Lou, C.1
-
137
-
-
80052456127
-
Multi-input RNAi-based logic circuit for identification of specific cancer cells
-
doi:10.1126/science.1205527
-
Xie Z, Wroblewska L, Prochazka L, Weiss R, Benenson Y. 2011 Multi-input RNAi-based logic circuit for identification of specific cancer cells. Science 333, 1307-1311. (doi:10.1126/science.1205527).
-
(2011)
Science
, vol.333
, pp. 1307-1311
-
-
Xie, Z.1
Wroblewska, L.2
Prochazka, L.3
Weiss, R.4
Benenson, Y.5
-
138
-
-
77952503333
-
Logic integration of mRNA signals by an RNAibased molecular computer
-
doi:10.1093/nar/gkq117
-
Xie Z, Liu SJ, Bleris L, Benenson Y. 2010 Logic integration of mRNA signals by an RNAibased molecular computer. Nucleic Acids Res. 38, 2692-2701. (doi:10.1093/nar/gkq117).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2692-2701
-
-
Xie, Z.1
Liu, S.J.2
Bleris, L.3
Benenson, Y.4
-
139
-
-
0029278612
-
DNA solution of hard computational problems
-
doi:10.1126/science.7725098
-
Lipton RJ. 1995 DNA solution of hard computational problems. Science 268, 542-545. (doi:10.1126/science.7725098).
-
(1995)
Science
, vol.268
, pp. 542-545
-
-
Lipton, R.J.1
-
140
-
-
0034652140
-
Molecular computation: RNA solutions to chess problems
-
USA, (doi:10.1073/pnas.97.4.1385
-
Faulhammer D, Cukras AR, Lipton RJ, Landweber LF. 2000 Molecular computation: RNA solutions to chess problems. Proc. Natl Acad. Sci. USA 97, 1385-1389. (doi:10.1073/pnas.97.4.1385).
-
(2000)
Proc. Natl Acad. Sci.
, vol.97
, pp. 1385-1389
-
-
Faulhammer, D.1
Cukras, A.R.2
Lipton, R.J.3
Landweber, L.F.4
-
141
-
-
54249140142
-
Cell biology. RNA computing in a living cell
-
doi:10.1126/science.1165665
-
Shapiro E, Gil B. 2008 Cell biology. RNA computing in a living cell. Science 322, 387-388. (doi:10.1126/science.1165665).
-
(2008)
Science
, vol.322
, pp. 387-388
-
-
Shapiro, E.1
Gil, B.2
-
142
-
-
52049090811
-
Chemically modified siRNA: Tools and applications
-
Today, (doi:10.1016/j.drudis.2008.05.007
-
Watts JK, Deleavey GF, Damha MJ. 2008 Chemically modified siRNA: tools and applications. Drug Discov. Today 13, 842-855. (doi:10.1016/j.drudis.2008.05. 007).
-
(2008)
Drug Discov.
, vol.13
, pp. 842-855
-
-
Watts, J.K.1
Deleavey, G.F.2
Damha, M.J.3
-
143
-
-
77955111609
-
Design, synthesis and DNA/RNA binding studies of nucleic acids comprising stereoregular and acyclic polycarbamate backbone: Polycarbamate nucleic acids (PCNA)
-
doi:10.1039/c003405n
-
Madhuri V, Kumar VA. 2010 Design, synthesis and DNA/RNA binding studies of nucleic acids comprising stereoregular and acyclic polycarbamate backbone: polycarbamate nucleic acids (PCNA). Org. Biomol. Chem. 8, 3734-3741. (doi:10.1039/c003405n).
-
(2010)
Org. Biomol. Chem.
, vol.8
, pp. 3734-3741
-
-
Madhuri, V.1
Kumar, V.A.2
-
144
-
-
51549121250
-
Recent approaches in the synthesis of conformationally restricted nucleoside analogues
-
doi:10.1002/ejoc.200700946
-
Mathe C, Perigaud C. 2008 Recent approaches in the synthesis of conformationally restricted nucleoside analogues. Eur. J. Org. Chem. 2008, 1489-1505. (doi:10.1002/ejoc.200700946).
-
(2008)
Eur. J. Org. Chem.
, vol.2008
, pp. 1489-1505
-
-
Mathe, C.1
Perigaud, C.2
-
145
-
-
0037841390
-
Silatrane-based surface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials
-
doi:10.1016/S0304-3991(03)00053-6
-
Shlyakhtenko LS, Gall AA, Filonov A, Cerovac Z, Lushnikov A, Lyubchenko YL. 2003 Silatrane-based surface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials. Ultramicroscopy 97, 279-287. (doi:10.1016/S0304-3991(03)00053-6).
-
(2003)
Ultramicroscopy
, vol.97
, pp. 279-287
-
-
Shlyakhtenko, L.S.1
Gall, A.A.2
Filonov, A.3
Cerovac, Z.4
Lushnikov, A.5
Lyubchenko, Y.L.6
-
146
-
-
78650006466
-
Methods of site-specific labeling of RNA with fluorescent dyes methods in enzymology
-
ed. D Herschlag), Methods in Enzymology, San Diego, CA: Academic Press. (doi:10.1016/S0076-6879(09)69003-0
-
Solomatin S, Herschlag D. 2009 Methods of site-specific labeling of RNA with fluorescent dyes methods in enzymology. In Biophysical, chemical, and functional probes of RNA structure, interactions and folding (ed. D Herschlag), pp. 47-68. Methods in Enzymology, vol. 469. San Diego, CA: Academic Press. (doi:10.1016/S0076-6879(09)69003-0).
-
(2009)
Biophysical, Chemical, and Functional Probes of RNA Structure, Interactions and Folding
, vol.469
, pp. 47-68
-
-
Solomatin, S.1
Herschlag, D.2
-
147
-
-
55049097955
-
A base-labile group for 2'-OH protection of ribonucleosides: A major challenge for RNA synthesis
-
doi:10.1002/chem.200801392
-
Lavergne T, Bertrand JR, Vasseur JJ, Debart F. 2008 A base-labile group for 2'-OH protection of ribonucleosides: A major challenge for RNA synthesis. Chemistry 14, 9135-9138. (doi:10.1002/chem.200801392).
-
(2008)
Chemistry
, vol.14
, pp. 9135-9138
-
-
Lavergne, T.1
Bertrand, J.R.2
Vasseur, J.J.3
Debart, F.4
-
148
-
-
0037036444
-
Computer modeling of three-dimensional structure of dnapackaging RNA(pRNA)monomer, dimer, and hexamer of φ29 DNA packagingmotor
-
doi:10.1074/jbc.M112061200
-
Hoeprich S, Guo P. 2002 Computer modeling of three-dimensional structure of DNApackaging RNA(pRNA)monomer, dimer, and hexamer of φ29 DNA packagingmotor. J. Biol. Chem. 277, 20 794-20 803. (doi:10.1074/jbc.M112061200).
-
(2002)
J. Biol. Chem
, vol.277
, pp. 20794-20803
-
-
Hoeprich, S.1
Guo, P.2
-
149
-
-
66749152587
-
A generic protocol for the expression and purification of recombinant RNA in escherichia coli using a tRNA scaffold
-
doi:10.1038/nprot.2009.67
-
Ponchon L, Beauvais G, Nonin-Lecomte S, Dardel F. 2009 A generic protocol for the expression and purification of recombinant RNA in Escherichia coli using a tRNA scaffold. Nat. Protoc. 4, 947-959. (doi:10.1038/nprot.2009.67).
-
(2009)
Nat. Protoc.
, vol.4
, pp. 947-959
-
-
Ponchon, L.1
Beauvais, G.2
Nonin-Lecomte, S.3
Dardel, F.4
-
150
-
-
3543096756
-
Formation of a catalytically active dimer by tRNA-driven short ribozymes
-
doi:10.1038/nbt1098-961
-
Kuwabara T, Warashina M, Orita M, Koseki S, Ohkawa J, Taira K. 1998 Formation of a catalytically active dimer by tRNA-driven short ribozymes. Nat. Biotechnol. 16, 961-965. (doi:10.1038/nbt1098-961).
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 961-965
-
-
Kuwabara, T.1
Warashina, M.2
Orita, M.3
Koseki, S.4
Ohkawa, J.5
Taira, K.6
|