A single-stranded architecture for cotranscriptional folding of RNA nanostructures

Science

Volumn 345, Issue 6198, 2014, Pages 799-804

  Geary, Cody ^a   Rothemund, Paul W K ^b   Andersen, Ebbe S ^a  

^a AARHUS UNIVERSITY   (Denmark)

^b CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOZYME; RNA POLYMERASE; BACTERIOPHAGE T7 RNA POLYMERASE; DNA; DNA DIRECTED RNA POLYMERASE; NANOMATERIAL; RNA; VIRUS PROTEIN;

ARRAY; CELL ORGANELLE; DNA; GENE EXPRESSION; RNA;

ALGORITHM; ARTICLE; DNA STRUCTURE; DNA TEMPLATE; FUNCTIONAL STATUS; GEOMETRY; HUMAN; MOLECULAR MODEL; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN DATA BANK; PROTEIN QUATERNARY STRUCTURE; PROTEIN SECONDARY STRUCTURE; RNA FOLDING; RNA STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; CONFORMATION; GENETIC TRANSCRIPTION; GENETICS; METABOLISM; ULTRASTRUCTURE;

DNA; DNA-DIRECTED RNA POLYMERASES; NANOSTRUCTURES; NUCLEIC ACID CONFORMATION; RNA; SOFTWARE; TEMPLATES, GENETIC; TRANSCRIPTION, GENETIC; VIRAL PROTEINS;

EID: 84906091908     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1253920     Document Type: Article

References (48)

1. N. C. Seeman, J. Theor. Biol. 99, 237-247 (1982).
2. A. V. Pinheiro, D. Han, W. M. Shih, H. Yan, Nat. Nanotechnol. 6, 763-772 (2011).
3. L. Jaeger, N. B. Leontis, Angew. Chem. Int. Ed. Engl. 39, 2521-2524 (2000).
4. W. Grabow, L. Jaeger, F1000Prime Rep. 5, 46 (2013).
5. J. Lee et al., Proc. Natl. Acad. Sci. U.S.A. 111, 2122-2127 (2014).
6. I. Severcan, C. Geary, E. Verzemnieks, A. Chworos, L. Jaeger, Nano Lett. 9, 1270-1277 (2009).
7. P. Guo, C. Zhang, C. Chen, K. Garver, M. Trottier, Mol. Cell 2, 149-155 (1998).
8. W. W. Grabow et al., Nano Lett. 11, 878-887 (2011).
9. J. H. Chen, N. C. Seeman, Nature 350, 631-633 (1991).
10. W. M. Shih, J. D. Quispe, G. F. Joyce, Nature 427, 618-621 (2004).
11. E. S. Andersen et al., Nature 459, 73-76 (2009).
12. K. A. Afonin et al., Nat. Nanotechnol. 5, 676-682 (2010).
13. I. Severcan et al., Nat. Chem. 2, 772-779 (2010).
14. H. Yan, X. Zhang, Z. Shen, N. C. Seeman, Nature 415, 62-65 (2002).
15. A. Chworos et al., Science 306, 2068-2072 (2004).
16. E. Winfree, F. Liu, L. A. Wenzler, N. C. Seeman, Nature 394, 539-544 (1998).
17. P. W. K. Rothemund, Nature 440, 297-302 (2006).
18. B. Wei, M. Dai, P. Yin, Nature 485, 623-626 (2012).
19. Z. Li et al., J. Am. Chem. Soc. 131, 13093-13098 (2009).
20. C. Lin et al., Proc. Natl. Acad. Sci. U.S.A. 105, 17626-17631 (2008).
21. C. J. Delebecque, A. B. Lindner, P. A. Silver, F. A. Aldaye, Science 333, 470-474 (2011).
22. L. Jaeger, A. Chworos, Curr. Opin. Struct. Biol. 16, 531-543 (2006).
23. S. Horiya et al., Chem. Biol. 10, 645-654 (2003).
24. H. Ohno et al., Nat. Nanotechnol. 6, 116-120 (2011).
25. J. S. Paige, T. Nguyen-Duc, W. Song, S. R. Jaffrey, Science 335, 1194 (2012).
26. L. M. Hochrein, M. Schwarzkopf, M. Shahgholi, P. Yin, N. A. Pierce, J. Am. Chem. Soc. 135, 17322-17330 (2013).
27. T. J. Fu, N. C. Seeman, Biochemistry 32, 3211-3220 (1993).
28. R. E. Dickerson et al., Science 216, 475-485 (1982).
29. Y. Tanaka et al., Nucleic Acids Res. 27, 949-955 (1999).
30. See the supplementary materials on Science Online.
31. E. Ennifar, P. Walter, B. Ehresmann, C. Ehresmann, P. Dumas, Nat. Struct. Biol. 8, 1064-1068 (2001).
32. A. J. Lee, D. M. Crothers, Structure 6, 993-1007 (1998).
33. W. Kasprzak, E. Bindewald, T. J. Kim, L. Jaeger, B. A. Shapiro, Methods 54, 239-250 (2011).
34. S. Arnott, D. W. Hukins, S. D. Dover, W. Fuller, A. R. Hodgson, J. Mol. Biol. 81, 107-122 (1973).
35. F. Jossinet, T. E. Ludwig, E. Westhof, Bioinformatics 26, 2057-2059 (2010).
36. E. F. Pettersen et al., J. Comput. Chem. 25, 1605-1612 (2004).
37. M. Molinaro, I. Tinoco Jr., Nucleic Acids Res. 23, 3056-3063 (1995).
38. X. C. Bai, T. G. Martin, S. H. Scheres, H. Dietz, Proc. Natl. Acad. Sci. U.S.A. 109, 20012-20017 (2012).
39. H. Isambert, Methods 49, 189-196 (2009).
40. J. N. Zadeh et al., J. Comput. Chem. 32, 170-173 (2011).
41. X. Sun, S. Hyeon Ko, C. Zhang, A. E. Ribbe, C. Mao, J. Am. Chem. Soc. 131, 13248-13249 (2009).
42. S. Hamada, S. Murata, Angew. Chem. Int. Ed. Eng. 48, 6820-6823 (2009).
43. P. W. K. Rothemund et al., J. Am. Chem. Soc. 126, 16344-16352 (2004).
44. S. L. Heilman-Miller, S. A. Woodson, RNA 9, 722-733 (2003).
45. J. A. Cruz, E. Westhof, Cell 136, 604-609 (2009).
46. C. Geary, A. Chworos, L. Jaeger, Nucleic Acids Res. 39, 1066-1080 (2011).
47. D. J. Klein, T. M. Schmeing, P. B. Moore, T. A. Steitz, EMBO J. 20, 4214-4221 (2001).
48. W. W. Grabow, L. Jaeger, Acc. Chem. Res. 47, 1871-1880 (2014).