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Volumn 8, Issue 8, 2014, Pages 8130-8140

Engineering RNA-protein complexes with different shapes for imaging and therapeutic applications

Author keywords

high speed atomic force microscopy; nanomedicine; RNA; RNA nanotechnology; RNA protein interaction; RNAi; RNP nanostructures

Indexed keywords

ATOMIC FORCE MICROSCOPY; MAMMALS; MEDICAL NANOTECHNOLOGY; NANOSTRUCTURES; PROTEINS; RNA; SYNTHETIC BIOLOGY;

EID: 84906679887     PISSN: 19360851     EISSN: 1936086X     Source Type: Journal    
DOI: 10.1021/nn502253c     Document Type: Article
Times cited : (66)

References (52)
  • 2
    • 60749134015 scopus 로고    scopus 로고
    • Assembly of Ribosomes and Spliceosomes: Complex Ribonucleoprotein Machines
    • Staley, J. P.; Woolford, J. L., Jr. Assembly of Ribosomes and Spliceosomes: Complex Ribonucleoprotein Machines Curr. Opin. Cell Biol. 2009, 21, 109-118
    • (2009) Curr. Opin. Cell Biol. , vol.21 , pp. 109-118
    • Staley, J.P.1    Woolford Jr., J.L.2
  • 3
    • 84882801549 scopus 로고    scopus 로고
    • Altered Ribostasis: RNA-Protein Granules in Degenerative Disorders
    • Ramaswami, M.; Taylor, J. P.; Parker, R. Altered Ribostasis: RNA-Protein Granules in Degenerative Disorders Cell 2013, 154, 727-736
    • (2013) Cell , vol.154 , pp. 727-736
    • Ramaswami, M.1    Taylor, J.P.2    Parker, R.3
  • 5
    • 22244483207 scopus 로고    scopus 로고
    • Induced Fit of RNA on Binding the L7Ae Protein to the Kink-Turn Motif
    • Turner, B.; Melcher, S. E.; Wilson, T. J.; Norman, D. G.; Lilley, D. M. Induced Fit of RNA on Binding the L7Ae Protein to the Kink-Turn Motif RNA 2005, 11, 1192-1200
    • (2005) RNA , vol.11 , pp. 1192-1200
    • Turner, B.1    Melcher, S.E.2    Wilson, T.J.3    Norman, D.G.4    Lilley, D.M.5
  • 6
    • 33745616104 scopus 로고    scopus 로고
    • The Role of RNA Structure in the Interaction of U1A Protein with U1 Hairpin II RNA
    • Law, M. J.; Rice, A. J.; Lin, P.; Laird-Offringa, I. A. The Role of RNA Structure in the Interaction of U1A Protein with U1 Hairpin II RNA RNA 2006, 12, 1168-1178
    • (2006) RNA , vol.12 , pp. 1168-1178
    • Law, M.J.1    Rice, A.J.2    Lin, P.3    Laird-Offringa, I.A.4
  • 7
    • 84871324763 scopus 로고    scopus 로고
    • Single-Molecule Observation of the Induction of K-Turn RNA Structure on Binding L7Ae Protein
    • Wang, J.; Fessl, T.; Schroeder, K. T.; Ouellet, J.; Liu, Y.; Freeman, A. D.; Lilley, D. M. Single-Molecule Observation of the Induction of K-Turn RNA Structure on Binding L7Ae Protein Biophys. J. 2012, 103, 2541-2548
    • (2012) Biophys. J. , vol.103 , pp. 2541-2548
    • Wang, J.1    Fessl, T.2    Schroeder, K.T.3    Ouellet, J.4    Liu, Y.5    Freeman, A.D.6    Lilley, D.M.7
  • 8
    • 83555174809 scopus 로고    scopus 로고
    • Challenges and Opportunities for Structural DNA Nanotechnology
    • Pinheiro, A. V.; Han, D.; Shih, W. M.; Yan, H. Challenges and Opportunities for Structural DNA Nanotechnology Nat. Nanotechnol. 2011, 6, 763-772
    • (2011) Nat. Nanotechnol. , vol.6 , pp. 763-772
    • Pinheiro, A.V.1    Han, D.2    Shih, W.M.3    Yan, H.4
  • 9
    • 84864814827 scopus 로고    scopus 로고
    • DNA-Based Assembly Lines and Nanofactories
    • Simmel, F. C. DNA-Based Assembly Lines and Nanofactories Curr. Opin. Biotechnol. 2012, 23, 516-521
    • (2012) Curr. Opin. Biotechnol. , vol.23 , pp. 516-521
    • Simmel, F.C.1
  • 12
    • 84857335824 scopus 로고    scopus 로고
    • A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads
    • Douglas, S. M.; Bachelet, I.; Church, G. M. A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads Science 2012, 335, 831-834
    • (2012) Science , vol.335 , pp. 831-834
    • Douglas, S.M.1    Bachelet, I.2    Church, G.M.3
  • 17
    • 78649985789 scopus 로고    scopus 로고
    • The Emerging Field of RNA Nanotechnology
    • Guo, P. The Emerging Field of RNA Nanotechnology Nat. Nanotechnol. 2010, 5, 833-842
    • (2010) Nat. Nanotechnol. , vol.5 , pp. 833-842
    • Guo, P.1
  • 18
    • 84887839634 scopus 로고    scopus 로고
    • RNA Modularity for Synthetic Biology
    • Grabow, W.; Jaeger, L. RNA Modularity for Synthetic Biology F1000Prime Rep. 2013, 5, 46-55
    • (2013) F1000Prime Rep. , vol.5 , pp. 46-55
    • Grabow, W.1    Jaeger, L.2
  • 20
    • 31344435146 scopus 로고    scopus 로고
    • RNA Nanotechnology: Engineering, Assembly and Applications in Detection, Gene Delivery and Therapy
    • Guo, P. RNA Nanotechnology: Engineering, Assembly and Applications in Detection, Gene Delivery and Therapy J. Nanosci. Nanotechnol. 2005, 5, 1964-1982
    • (2005) J. Nanosci. Nanotechnol. , vol.5 , pp. 1964-1982
    • Guo, P.1
  • 24
    • 84867552073 scopus 로고    scopus 로고
    • Three-Dimensionally Designed Protein-Responsive RNA Devices for Cell Signaling Regulation
    • Kashida, S.; Inoue, T.; Saito, H. Three-Dimensionally Designed Protein-Responsive RNA Devices for Cell Signaling Regulation Nucleic Acids Res. 2012, 40, 9369-9378
    • (2012) Nucleic Acids Res. , vol.40 , pp. 9369-9378
    • Kashida, S.1    Inoue, T.2    Saito, H.3
  • 25
    • 78649429678 scopus 로고    scopus 로고
    • Reprogramming Cellular Behavior with RNA Controllers Responsive to Endogenous Proteins
    • Culler, S. J.; Hoff, K. G.; Smolke, C. D. Reprogramming Cellular Behavior with RNA Controllers Responsive to Endogenous Proteins Science 2010, 330, 1251-1255
    • (2010) Science , vol.330 , pp. 1251-1255
    • Culler, S.J.1    Hoff, K.G.2    Smolke, C.D.3
  • 26
    • 79957851139 scopus 로고    scopus 로고
    • Sequence-Based Identification of 3D Structural Modules in RNA with RMDetect
    • Cruz, J. A.; Westhof, E. Sequence-Based Identification of 3D Structural Modules in RNA with RMDetect Nat. Methods 2011, 8, 513-521
    • (2011) Nat. Methods , vol.8 , pp. 513-521
    • Cruz, J.A.1    Westhof, E.2
  • 27
    • 79960697001 scopus 로고    scopus 로고
    • Organization of Intracellular Reactions with Rationally Designed RNA Assemblies
    • Delebecque, C. J.; Lindner, A. B.; Silver, P. A.; Aldaye, F. A. Organization of Intracellular Reactions with Rationally Designed RNA Assemblies Science 2011, 333, 470-474
    • (2011) Science , vol.333 , pp. 470-474
    • Delebecque, C.J.1    Lindner, A.B.2    Silver, P.A.3    Aldaye, F.A.4
  • 29
    • 84867453498 scopus 로고    scopus 로고
    • Co-transcriptional Assembly of Chemically Modified RNA Nanoparticles Functionalized with siRNAs
    • Afonin, K. A.; Kireeva, M.; Grabow, W. W.; Kashlev, M.; Jaeger, L.; Shapiro, B. A. Co-transcriptional Assembly of Chemically Modified RNA Nanoparticles Functionalized with siRNAs Nano Lett. 2012, 12, 5192-5195
    • (2012) Nano Lett. , vol.12 , pp. 5192-5195
    • Afonin, K.A.1    Kireeva, M.2    Grabow, W.W.3    Kashlev, M.4    Jaeger, L.5    Shapiro, B.A.6
  • 30
    • 84878025754 scopus 로고    scopus 로고
    • Fabrication of 14 Different RNA Nanoparticles for Specific Tumor Targeting without Accumulation in Normal Organs
    • Shu, Y.; Haque, F.; Shu, D.; Li, W.; Zhu, Z.; Kotb, M.; Lyubchenko, Y.; Guo, P. Fabrication of 14 Different RNA Nanoparticles for Specific Tumor Targeting without Accumulation in Normal Organs RNA 2013, 19, 767-777
    • (2013) RNA , vol.19 , pp. 767-777
    • Shu, Y.1    Haque, F.2    Shu, D.3    Li, W.4    Zhu, Z.5    Kotb, M.6    Lyubchenko, Y.7    Guo, P.8
  • 32
    • 2342475659 scopus 로고    scopus 로고
    • Molecular Basis of Box C/D RNA-Protein Interactions; Cocrystal Structure of Archaeal L7Ae and a Box C/D RNA
    • Moore, T.; Zhang, Y.; Fenley, M. O.; Li, H. Molecular Basis of Box C/D RNA-Protein Interactions; Cocrystal Structure of Archaeal L7Ae and a Box C/D RNA Structure 2004, 12, 807-818
    • (2004) Structure , vol.12 , pp. 807-818
    • Moore, T.1    Zhang, Y.2    Fenley, M.O.3    Li, H.4
  • 33
    • 0037324527 scopus 로고    scopus 로고
    • Binding of L7Ae Protein to the K-Turn of Archaeal snoRNAs: A Shared RNA Binding Motif for C/D and H/ACA Box snoRNAs in Archaea
    • Rozhdestvensky, T. S.; Tang, T. H.; Tchirkova, I. V.; Brosius, J.; Bachellerie, J. P.; Huttenhofer, A. Binding of L7Ae Protein to the K-Turn of Archaeal snoRNAs: A Shared RNA Binding Motif for C/D and H/ACA Box snoRNAs in Archaea Nucleic Acids Res. 2003, 31, 869-877
    • (2003) Nucleic Acids Res. , vol.31 , pp. 869-877
    • Rozhdestvensky, T.S.1    Tang, T.H.2    Tchirkova, I.V.3    Brosius, J.4    Bachellerie, J.P.5    Huttenhofer, A.6
  • 34
    • 0035423087 scopus 로고    scopus 로고
    • The Kink-Turn: A New RNA Secondary Structure Motif
    • Klein, D. J.; Schmeing, T. M.; Moore, P. B.; Steitz, T. A. The Kink-Turn: A New RNA Secondary Structure Motif EMBO J. 2001, 20, 4214-4221
    • (2001) EMBO J. , vol.20 , pp. 4214-4221
    • Klein, D.J.1    Schmeing, T.M.2    Moore, P.B.3    Steitz, T.A.4
  • 35
    • 84890490806 scopus 로고    scopus 로고
    • State-of-the-Art High-Speed Atomic Force Microscopy for Investigation of Single-Molecular Dynamics of Proteins
    • Rajendran, A.; Endo, M.; Sugiyama, H. State-of-the-Art High-Speed Atomic Force Microscopy for Investigation of Single-Molecular Dynamics of Proteins Chem. Rev. 2014, 114, 1493-1520
    • (2014) Chem. Rev. , vol.114 , pp. 1493-1520
    • Rajendran, A.1    Endo, M.2    Sugiyama, H.3
  • 36
    • 84055217526 scopus 로고    scopus 로고
    • Visual Analysis of Concerted Cleavage by Type IIF Restriction Enzyme SfiI in Subsecond Time Region
    • Suzuki, Y.; Gilmore, J. L.; Yoshimura, S. H.; Henderson, R. M.; Lyubchenko, Y. L.; Takeyasu, K. Visual Analysis of Concerted Cleavage by Type IIF Restriction Enzyme SfiI in Subsecond Time Region Biophys. J. 2011, 101, 2992-2998
    • (2011) Biophys. J. , vol.101 , pp. 2992-2998
    • Suzuki, Y.1    Gilmore, J.L.2    Yoshimura, S.H.3    Henderson, R.M.4    Lyubchenko, Y.L.5    Takeyasu, K.6
  • 37
    • 78149285270 scopus 로고    scopus 로고
    • Video Imaging of Walking Myosin v by High-Speed Atomic Force Microscopy
    • Kodera, N.; Yamamoto, D.; Ishikawa, R.; Ando, T. Video Imaging of Walking Myosin V by High-Speed Atomic Force Microscopy Nature 2010, 468, 72-76
    • (2010) Nature , vol.468 , pp. 72-76
    • Kodera, N.1    Yamamoto, D.2    Ishikawa, R.3    Ando, T.4
  • 38
    • 66249107019 scopus 로고    scopus 로고
    • Direct Observation of ATP-Induced Conformational Changes in Single P2X(4) Receptors
    • Shinozaki, Y.; Sumitomo, K.; Tsuda, M.; Koizumi, S.; Inoue, K.; Torimitsu, K. Direct Observation of ATP-Induced Conformational Changes in Single P2X(4) Receptors PLoS Biol. 2009, 7, e1000103
    • (2009) PLoS Biol. , vol.7 , pp. 1000103
    • Shinozaki, Y.1    Sumitomo, K.2    Tsuda, M.3    Koizumi, S.4    Inoue, K.5    Torimitsu, K.6
  • 43
    • 84883203978 scopus 로고    scopus 로고
    • Fabrication of pRNA Nanoparticles to Deliver Therapeutic RNAs and Bioactive Compounds into Tumor Cells
    • Shu, Y.; Shu, D.; Haque, F.; Guo, P. Fabrication of pRNA Nanoparticles To Deliver Therapeutic RNAs and Bioactive Compounds into Tumor Cells Nat. Protoc. 2013, 8, 1635-1659
    • (2013) Nat. Protoc. , vol.8 , pp. 1635-1659
    • Shu, Y.1    Shu, D.2    Haque, F.3    Guo, P.4
  • 44
    • 84865436732 scopus 로고    scopus 로고
    • Uniqueness, Advantages, Challenges, Solutions, and Perspectives in Therapeutics Applying RNA Nanotechnology
    • Guo, P.; Haque, F.; Hallahan, B.; Reif, R.; Li, H. Uniqueness, Advantages, Challenges, Solutions, and Perspectives in Therapeutics Applying RNA Nanotechnology Nucleic Acid Ther. 2012, 22, 226-245
    • (2012) Nucleic Acid Ther. , vol.22 , pp. 226-245
    • Guo, P.1    Haque, F.2    Hallahan, B.3    Reif, R.4    Li, H.5
  • 46
    • 78751632678 scopus 로고    scopus 로고
    • Synthetic Human Cell Fate Regulation by Protein-Driven RNA Switches
    • Saito, H.; Fujita, Y.; Kashida, S.; Hayashi, K.; Inoue, T. Synthetic Human Cell Fate Regulation by Protein-Driven RNA Switches Nat. Commun. 2011, 2, 160-167
    • (2011) Nat. Commun. , vol.2 , pp. 160-167
    • Saito, H.1    Fujita, Y.2    Kashida, S.3    Hayashi, K.4    Inoue, T.5
  • 47
    • 44349165666 scopus 로고    scopus 로고
    • Cellular siRNA Delivery Mediated by a Cell-Permeant RNA-Binding Protein and Photoinduced RNA Interference
    • Endoh, T.; Sisido, M.; Ohtsuki, T. Cellular siRNA Delivery Mediated by a Cell-Permeant RNA-Binding Protein and Photoinduced RNA Interference Bioconjugate Chem. 2008, 19, 1017-1024
    • (2008) Bioconjugate Chem. , vol.19 , pp. 1017-1024
    • Endoh, T.1    Sisido, M.2    Ohtsuki, T.3
  • 48
    • 70449120118 scopus 로고    scopus 로고
    • Cell-Surface Accumulation of Flock House Virus-Derived Peptide Leads to Efficient Internalization via Macropinocytosis
    • Nakase, I.; Hirose, H.; Tanaka, G.; Tadokoro, A.; Kobayashi, S.; Takeuchi, T.; Futaki, S. Cell-Surface Accumulation of Flock House Virus-Derived Peptide Leads to Efficient Internalization via Macropinocytosis Mol. Ther. 2009, 17, 1868-1876
    • (2009) Mol. Ther. , vol.17 , pp. 1868-1876
    • Nakase, I.1    Hirose, H.2    Tanaka, G.3    Tadokoro, A.4    Kobayashi, S.5    Takeuchi, T.6    Futaki, S.7
  • 50
    • 84883203974 scopus 로고    scopus 로고
    • Crystal Structure of 3WJ Core Revealing Divalent Ion-Promoted Thermostability and Assembly of the Phi29 Hexameric Motor pRNA
    • Zhang, H.; Endrizzi, J. A.; Shu, Y.; Haque, F.; Sauter, C.; Shlyakhtenko, L. S.; Lyubchenko, Y.; Guo, P.; Chi, Y. I. Crystal Structure of 3WJ Core Revealing Divalent Ion-Promoted Thermostability and Assembly of the Phi29 Hexameric Motor pRNA RNA 2013, 19, 1226-1237
    • (2013) RNA , vol.19 , pp. 1226-1237
    • Zhang, H.1    Endrizzi, J.A.2    Shu, Y.3    Haque, F.4    Sauter, C.5    Shlyakhtenko, L.S.6    Lyubchenko, Y.7    Guo, P.8    Chi, Y.I.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.