-
1
-
-
77956422639
-
In vitro assembly of cubic RNA-based scaffolds designed in silico
-
K.A. Afonin, E. Bindewald, A.J. Yaghoubian, N. Voss, E. Jacovetty, and B.A. Shapiro In vitro assembly of cubic RNA-based scaffolds designed in silico Nature Nanotechnology 5 9 2010 676 682
-
(2010)
Nature Nanotechnology
, vol.5
, Issue.9
, pp. 676-682
-
-
Afonin, K.A.1
Bindewald, E.2
Yaghoubian, A.J.3
Voss, N.4
Jacovetty, E.5
Shapiro, B.A.6
-
2
-
-
84896700098
-
Co-transcriptional production of RNA-DNA hybrids for simultaneous release of multiple split functionalities
-
K.A. Afonin, R. Desai, M. Viard, M.L. Kireeva, E. Bindewald, and C.L. Case Co-transcriptional production of RNA-DNA hybrids for simultaneous release of multiple split functionalities Nucleic Acids Research 42 3 2014 2085 2097
-
(2014)
Nucleic Acids Research
, vol.42
, Issue.3
, pp. 2085-2097
-
-
Afonin, K.A.1
Desai, R.2
Viard, M.3
Kireeva, M.L.4
Bindewald, E.5
Case, C.L.6
-
3
-
-
84555175089
-
Design and self-assembly of siRNA-functionalized RNA nanoparticles for use in automated nanomedicine
-
K.A. Afonin, W.W. Grabow, F.M. Walker, E. Bindewald, M.A. Dobrovolskaia, and B.A. Shapiro Design and self-assembly of siRNA-functionalized RNA nanoparticles for use in automated nanomedicine Nature Protocols 6 12 2011 2022 2034
-
(2011)
Nature Protocols
, vol.6
, Issue.12
, pp. 2022-2034
-
-
Afonin, K.A.1
Grabow, W.W.2
Walker, F.M.3
Bindewald, E.4
Dobrovolskaia, M.A.5
Shapiro, B.A.6
-
4
-
-
84902585263
-
In silico design and enzymatic synthesis of functional RNA nanoparticles
-
K.A. Afonin, W.K. Kasprzak, E. Bindewald, M. Kireeva, M. Viard, and M. Kashlev In silico design and enzymatic synthesis of functional RNA nanoparticles Accounts of Chemical Research 47 6 2014 1731 1741
-
(2014)
Accounts of Chemical Research
, vol.47
, Issue.6
, pp. 1731-1741
-
-
Afonin, K.A.1
Kasprzak, W.K.2
Bindewald, E.3
Kireeva, M.4
Viard, M.5
Kashlev, M.6
-
5
-
-
84899738170
-
Computational and experimental characterization of RNA cubic nanoscaffolds
-
K.A. Afonin, W. Kasprzak, E. Bindewald, P.S. Puppala, A.R. Diehl, and K.T. Hall Computational and experimental characterization of RNA cubic nanoscaffolds Methods 67 2 2014 256 265
-
(2014)
Methods
, vol.67
, Issue.2
, pp. 256-265
-
-
Afonin, K.A.1
Kasprzak, W.2
Bindewald, E.3
Puppala, P.S.4
Diehl, A.R.5
Hall, K.T.6
-
6
-
-
84867453498
-
Co-transcriptional assembly of chemically modified RNA nanoparticles functionalized with siRNAs
-
K.A. Afonin, M. Kireeva, W.W. Grabow, M. Kashlev, L. Jaeger, and B.A. Shapiro Co-transcriptional assembly of chemically modified RNA nanoparticles functionalized with siRNAs Nano Letters 12 10 2012 5192 5195
-
(2012)
Nano Letters
, vol.12
, Issue.10
, pp. 5192-5195
-
-
Afonin, K.A.1
Kireeva, M.2
Grabow, W.W.3
Kashlev, M.4
Jaeger, L.5
Shapiro, B.A.6
-
7
-
-
84863365893
-
Attenuation of loop-receptor interactions with pseudoknot formation
-
K.A. Afonin, Y.P. Lin, E.R. Calkins, and L. Jaeger Attenuation of loop-receptor interactions with pseudoknot formation Nucleic Acids Research 40 5 2012 2168 2180
-
(2012)
Nucleic Acids Research
, vol.40
, Issue.5
, pp. 2168-2180
-
-
Afonin, K.A.1
Lin, Y.P.2
Calkins, E.R.3
Jaeger, L.4
-
8
-
-
84923538538
-
Triggering of RNA interference with RNA-RNA, RNA-DNA, and DNA-RNA nanoparticles
-
(In Press)
-
Afonin, K. A., Viard, M., Kagiampakis, I., Case, C. L., Dobrovolskaia, M. A., Hofmann, J., et al. (In Press). Triggering of RNA interference with RNA-RNA, RNA-DNA, and DNA-RNA nanoparticles. ACS Nano.
-
ACS Nano
-
-
Afonin, K.A.1
Viard, M.2
Kagiampakis, I.3
Case, C.L.4
Dobrovolskaia, M.A.5
Hofmann, J.6
-
9
-
-
84907879759
-
Multifunctional RNA nanoparticles
-
K.A. Afonin, M. Viard, A.Y. Koyfman, A.N. Martins, W.K. Kasprzak, and M. Panigaj Multifunctional RNA nanoparticles Nano Letters 14 10 2014 5662 5671
-
(2014)
Nano Letters
, vol.14
, Issue.10
, pp. 5662-5671
-
-
Afonin, K.A.1
Viard, M.2
Koyfman, A.Y.3
Martins, A.N.4
Kasprzak, W.K.5
Panigaj, M.6
-
10
-
-
84876420575
-
Activation of different split functionalities on re-association of RNA-DNA hybrids
-
K.A. Afonin, M. Viard, A.N. Martins, S.J. Lockett, A.E. Maciag, and E.O. Freed Activation of different split functionalities on re-association of RNA-DNA hybrids Nature Nanotechnology 8 4 2013 296 304
-
(2013)
Nature Nanotechnology
, vol.8
, Issue.4
, pp. 296-304
-
-
Afonin, K.A.1
Viard, M.2
Martins, A.N.3
Lockett, S.J.4
Maciag, A.E.5
Freed, E.O.6
-
11
-
-
11844254846
-
Secondary structure prediction of interacting RNA molecules
-
M. Andronescu, Z.C. Zhang, and A. Condon Secondary structure prediction of interacting RNA molecules Journal of Molecular Biology 345 5 2005 987 1001
-
(2005)
Journal of Molecular Biology
, vol.345
, Issue.5
, pp. 987-1001
-
-
Andronescu, M.1
Zhang, Z.C.2
Condon, A.3
-
12
-
-
33744979613
-
Partition function and base pairing probabilities of RNA heterodimers
-
S.H. Bernhart, H. Tafer, U. Mückstein, C. Flamm, P.F. Stadler, and I.L. Hofacker Partition function and base pairing probabilities of RNA heterodimers Algorithms for Molecular Biology 1 1 2006 3
-
(2006)
Algorithms for Molecular Biology
, vol.1
, Issue.1
, pp. 3
-
-
Bernhart, S.H.1
Tafer, H.2
Mückstein, U.3
Flamm, C.4
Stadler, P.F.5
Hofacker, I.L.6
-
13
-
-
84555177452
-
Multistrand RNA secondary structure prediction and nanostructure design including pseudoknots
-
E. Bindewald, K. Afonin, L. Jaeger, and B.A. Shapiro Multistrand RNA secondary structure prediction and nanostructure design including pseudoknots ACS Nano 5 12 2011 9542 9551
-
(2011)
ACS Nano
, vol.5
, Issue.12
, pp. 9542-9551
-
-
Bindewald, E.1
Afonin, K.2
Jaeger, L.3
Shapiro, B.A.4
-
14
-
-
84875878783
-
Development of therapeutic-grade small interfering RNAs by chemical engineering
-
J.B. Bramsen, and J. Kjems Development of therapeutic-grade small interfering RNAs by chemical engineering Frontiers in Genetics 3 154 2012
-
(2012)
Frontiers in Genetics
, vol.3
, Issue.154
-
-
Bramsen, J.B.1
Kjems, J.2
-
15
-
-
84901469255
-
Predicting structure and stability for RNA complexes with intermolecular loop-loop base pairing
-
S. Cao, X.J. Xu, and S.J. Chen Predicting structure and stability for RNA complexes with intermolecular loop-loop base pairing RNA 20 2014 835 845 10.1261/rna.043976.113
-
(2014)
RNA
, vol.20
, pp. 835-845
-
-
Cao, S.1
Xu, X.J.2
Chen, S.J.3
-
16
-
-
10844257474
-
Building programmable jigsaw puzzles with RNA
-
A. Chworos, I. Severcan, A.Y. Koyfman, P. Weinkam, E. Oroudjev, and H.G. Hansma Building programmable jigsaw puzzles with RNA Science 306 5704 2004 2068 2072
-
(2004)
Science
, vol.306
, Issue.5704
, pp. 2068-2072
-
-
Chworos, A.1
Severcan, I.2
Koyfman, A.Y.3
Weinkam, P.4
Oroudjev, E.5
Hansma, H.G.6
-
17
-
-
3042735602
-
Prediction of hybridization and melting for double-stranded nucleic acids
-
R.A. Dimitrov, and M. Zuker Prediction of hybridization and melting for double-stranded nucleic acids Biophysical Journal 87 1 2004 215 226
-
(2004)
Biophysical Journal
, vol.87
, Issue.1
, pp. 215-226
-
-
Dimitrov, R.A.1
Zuker, M.2
-
18
-
-
0043285072
-
A partition function algorithm for nucleic acid secondary structure including pseudoknots
-
R.M. Dirks, and N.A. Pierce A partition function algorithm for nucleic acid secondary structure including pseudoknots Journal of Computational Chemistry 24 13 2003 1664 1677
-
(2003)
Journal of Computational Chemistry
, vol.24
, Issue.13
, pp. 1664-1677
-
-
Dirks, R.M.1
Pierce, N.A.2
-
19
-
-
66249137759
-
Self-assembly of DNA into nanoscale three-dimensional shapes
-
S.M. Douglas, H. Dietz, T. Liedl, B. Högberg, F. Graf, and W.M. Shih Self-assembly of DNA into nanoscale three-dimensional shapes Nature 459 7245 2009 414 418
-
(2009)
Nature
, vol.459
, Issue.7245
, pp. 414-418
-
-
Douglas, S.M.1
Dietz, H.2
Liedl, T.3
Högberg, B.4
Graf, F.5
Shih, W.M.6
-
20
-
-
0035863097
-
RNA interference is mediated by 21- and 22-nucleotide RNAs
-
S.M. Elbashir, W. Lendeckel, and T. Tuschl RNA interference is mediated by 21- and 22-nucleotide RNAs Genes and Development 15 2 2001 188 200
-
(2001)
Genes and Development
, vol.15
, Issue.2
, pp. 188-200
-
-
Elbashir, S.M.1
Lendeckel, W.2
Tuschl, T.3
-
21
-
-
0035803583
-
Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate
-
S.M. Elbashir, J. Martinez, A. Patkaniowska, W. Lendeckel, and T. Tuschl Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate EMBO Journal 20 23 2001 6877 6888
-
(2001)
EMBO Journal
, vol.20
, Issue.23
, pp. 6877-6888
-
-
Elbashir, S.M.1
Martinez, J.2
Patkaniowska, A.3
Lendeckel, W.4
Tuschl, T.5
-
22
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
-
A. Fire, S. Xu, M.K. Montgomery, S.A. Kostas, S.E. Driver, and C.C. Mello Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans Nature 391 6669 1998 806 811
-
(1998)
Nature
, vol.391
, Issue.6669
, pp. 806-811
-
-
Fire, A.1
Xu, S.2
Montgomery, M.K.3
Kostas, S.A.4
Driver, S.E.5
Mello, C.C.6
-
23
-
-
0015416708
-
Synthesis in vitro by bacterial RNA-polymerase of simian virus 40-specific RNA: Multiple transcription of the DNA template into a continuous polyribonucleotide
-
A.H. Fried, and F. Sokol Synthesis in vitro by bacterial RNA-polymerase of simian virus 40-specific RNA: Multiple transcription of the DNA template into a continuous polyribonucleotide Journal of General Virology 17 1 1972 69 79
-
(1972)
Journal of General Virology
, vol.17
, Issue.1
, pp. 69-79
-
-
Fried, A.H.1
Sokol, F.2
-
24
-
-
0033538419
-
Characterization of structural features important for T7 RNAP elongation complex stability reveals competing complex conformations and a role for the non-template strand in RNA displacement
-
V. Gopal, L.G. Brieba, R. Guajardo, W.T. McAllister, and R. Sousa Characterization of structural features important for T7 RNAP elongation complex stability reveals competing complex conformations and a role for the non-template strand in RNA displacement Journal of Molecular Biology 290 2 1999 411 431
-
(1999)
Journal of Molecular Biology
, vol.290
, Issue.2
, pp. 411-431
-
-
Gopal, V.1
Brieba, L.G.2
Guajardo, R.3
McAllister, W.T.4
Sousa, R.5
-
25
-
-
79851470025
-
Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes
-
W.W. Grabow, P. Zakrevsky, K.A. Afonin, A. Chworos, B.A. Shapiro, and L. Jaeger Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes Nano Letters 11 2 2011 878 887
-
(2011)
Nano Letters
, vol.11
, Issue.2
, pp. 878-887
-
-
Grabow, W.W.1
Zakrevsky, P.2
Afonin, K.A.3
Chworos, A.4
Shapiro, B.A.5
Jaeger, L.6
-
26
-
-
78649985789
-
The emerging field of RNA nanotechnology
-
P. Guo The emerging field of RNA nanotechnology Nature Nanotechnology 5 12 2010 833 842
-
(2010)
Nature Nanotechnology
, vol.5
, Issue.12
, pp. 833-842
-
-
Guo, P.1
-
27
-
-
0032110708
-
Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation
-
P. Guo, C. Zhang, C. Chen, K. Garver, and M. Trottier Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation Molecular Cell 2 1 1998 149 155
-
(1998)
Molecular Cell
, vol.2
, Issue.1
, pp. 149-155
-
-
Guo, P.1
Zhang, C.2
Chen, C.3
Garver, K.4
Trottier, M.5
-
28
-
-
40749140401
-
Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra
-
Y. He, T. Ye, M. Su, C. Zhang, A.E. Ribbe, and W. Jiang Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra Nature 452 7184 2008 198 201
-
(2008)
Nature
, vol.452
, Issue.7184
, pp. 198-201
-
-
He, Y.1
Ye, T.2
Su, M.3
Zhang, C.4
Ribbe, A.E.5
Jiang, W.6
-
29
-
-
33746655784
-
The architectonics of programmable RNA and DNA nanostructures
-
L. Jaeger, and A. Chworos The architectonics of programmable RNA and DNA nanostructures Current Opinion in Structural Biology 16 4 2006 531 543
-
(2006)
Current Opinion in Structural Biology
, vol.16
, Issue.4
, pp. 531-543
-
-
Jaeger, L.1
Chworos, A.2
-
30
-
-
44449103640
-
The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin
-
C.D. Kaplan, K.M. Larsson, and R.D. Kornberg The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin Molecular Cell 30 5 2008 547 556
-
(2008)
Molecular Cell
, vol.30
, Issue.5
, pp. 547-556
-
-
Kaplan, C.D.1
Larsson, K.M.2
Kornberg, R.D.3
-
31
-
-
0027214148
-
Histidine-tagged RNA polymerase: Dissection of the transcription cycle using immobilized enzyme
-
M. Kashlev, E. Martin, A. Polyakov, K. Severinov, V. Nikiforov, and A. Goldfarb Histidine-tagged RNA polymerase: Dissection of the transcription cycle using immobilized enzyme Gene 130 1 1993 9 14
-
(1993)
Gene
, vol.130
, Issue.1
, pp. 9-14
-
-
Kashlev, M.1
Martin, E.2
Polyakov, A.3
Severinov, K.4
Nikiforov, V.5
Goldfarb, A.6
-
32
-
-
0029809303
-
Histidine-tagged RNA polymerase of Escherichia coli and transcription in solid phase
-
M. Kashlev, E. Nudler, K. Severinov, S. Borukhov, N. Komissarova, and A. Goldfarb Histidine-tagged RNA polymerase of Escherichia coli and transcription in solid phase Methods in Enzymology 274 1996 326 334
-
(1996)
Methods in Enzymology
, vol.274
, pp. 326-334
-
-
Kashlev, M.1
Nudler, E.2
Severinov, K.3
Borukhov, S.4
Komissarova, N.5
Goldfarb, A.6
-
33
-
-
84901660497
-
RNA as a boiling-resistant anionic polymer material to build robust structures with defined shape and stoichiometry
-
E.F. Khisamutdinov, D.L. Jasinski, and P. Guo RNA as a boiling-resistant anionic polymer material to build robust structures with defined shape and stoichiometry ACS Nano 8 5 2014 4771 4781
-
(2014)
ACS Nano
, vol.8
, Issue.5
, pp. 4771-4781
-
-
Khisamutdinov, E.F.1
Jasinski, D.L.2
Guo, P.3
-
34
-
-
0034595503
-
Overextended RNA:DNA hybrid as a negative regulator of RNA polymerase II processivity
-
M.L. Kireeva, N. Komissarova, and M. Kashlev Overextended RNA:DNA hybrid as a negative regulator of RNA polymerase II processivity Journal of Molecular Biology 299 2 2000 325 335
-
(2000)
Journal of Molecular Biology
, vol.299
, Issue.2
, pp. 325-335
-
-
Kireeva, M.L.1
Komissarova, N.2
Kashlev, M.3
-
35
-
-
0034051171
-
The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex
-
M.L. Kireeva, N. Komissarova, D.S. Waugh, and M. Kashlev The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex Journal of Biological Chemistry 275 9 2000 6530 6536
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.9
, pp. 6530-6536
-
-
Kireeva, M.L.1
Komissarova, N.2
Waugh, D.S.3
Kashlev, M.4
-
36
-
-
0346515712
-
Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae
-
M.L. Kireeva, L. Lubkowska, N. Komissarova, and M. Kashlev Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae Methods in Enzymology 370 2003 138 155
-
(2003)
Methods in Enzymology
, vol.370
, pp. 138-155
-
-
Kireeva, M.L.1
Lubkowska, L.2
Komissarova, N.3
Kashlev, M.4
-
37
-
-
44449094019
-
Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation
-
M.L. Kireeva, Y.A. Nedialkov, G.H. Cremona, Y.A. Purtov, L. Lubkowska, and F. Malagon Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation Molecular Cell 30 5 2008 557 566
-
(2008)
Molecular Cell
, vol.30
, Issue.5
, pp. 557-566
-
-
Kireeva, M.L.1
Nedialkov, Y.A.2
Cremona, G.H.3
Purtov, Y.A.4
Lubkowska, L.5
Malagon, F.6
-
38
-
-
67849124180
-
Millisecond phase kinetic analysis of elongation catalyzed by human, yeast, and Escherichia coli RNA polymerase
-
M. Kireeva, Y.A. Nedialkov, X.Q. Gong, C. Zhang, Y. Xiong, and W. Moon Millisecond phase kinetic analysis of elongation catalyzed by human, yeast, and Escherichia coli RNA polymerase Methods 48 4 2009 333 345
-
(2009)
Methods
, vol.48
, Issue.4
, pp. 333-345
-
-
Kireeva, M.1
Nedialkov, Y.A.2
Gong, X.Q.3
Zhang, C.4
Xiong, Y.5
Moon, W.6
-
39
-
-
84870983295
-
Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase
-
M.L. Kireeva, K. Opron, S.A. Seibold, C. Domecq, R.I. Cukier, and B. Coulombe Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase BMC Biophysics 5 2012 11
-
(2012)
BMC Biophysics
, vol.5
, pp. 11
-
-
Kireeva, M.L.1
Opron, K.2
Seibold, S.A.3
Domecq, C.4
Cukier, R.I.5
Coulombe, B.6
-
40
-
-
0036203807
-
Nucleosome remodeling induced by RNA polymerase II: Loss of the H2A/H2B dimer during transcription
-
M.L. Kireeva, W. Walter, V. Tchernajenko, V. Bondarenko, M. Kashlev, and V.M. Studitsky Nucleosome remodeling induced by RNA polymerase II: Loss of the H2A/H2B dimer during transcription Molecular Cell 9 3 2002 541 552
-
(2002)
Molecular Cell
, vol.9
, Issue.3
, pp. 541-552
-
-
Kireeva, M.L.1
Walter, W.2
Tchernajenko, V.3
Bondarenko, V.4
Kashlev, M.5
Studitsky, V.M.6
-
41
-
-
78649518939
-
Synergistic self-assembly of RNA and DNA molecules
-
S.H. Ko, M. Su, C. Zhang, A.E. Ribbe, W. Jiang, and C. Mao Synergistic self-assembly of RNA and DNA molecules Nature Chemistry 2 12 2010 1050 1055
-
(2010)
Nature Chemistry
, vol.2
, Issue.12
, pp. 1050-1055
-
-
Ko, S.H.1
Su, M.2
Zhang, C.3
Ribbe, A.E.4
Jiang, W.5
Mao, C.6
-
42
-
-
82055164092
-
ViennaRNA package 2.0
-
R. Lorenz, S.H. Bernhart, C. Höner Zu Siederdissen, H. Tafer, C. Flamm, and P.F. Stadler ViennaRNA package 2.0 Algorithms for Molecular Biology 6 2011 26
-
(2011)
Algorithms for Molecular Biology
, vol.6
, pp. 26
-
-
Lorenz, R.1
Bernhart, S.H.2
Höner Zu Siederdissen, C.3
Tafer, H.4
Flamm, C.5
Stadler, P.F.6
-
44
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
D.H. Mathews, J. Sabina, M. Zuker, and D.H. Turner Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure Journal of Molecular Biology 288 5 1999 911 940
-
(1999)
Journal of Molecular Biology
, vol.288
, Issue.5
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
45
-
-
0024819449
-
Synthesis of small RNAs using T7 RNA polymerase
-
J.F. Milligan, and O.C. Uhlenbeck Synthesis of small RNAs using T7 RNA polymerase Methods in Enzymology 180 1989 51 62
-
(1989)
Methods in Enzymology
, vol.180
, pp. 51-62
-
-
Milligan, J.F.1
Uhlenbeck, O.C.2
-
46
-
-
33746827367
-
The role of the largest RNA polymerase subunit lid element in preventing the formation of extended RNA-DNA hybrid
-
T. Naryshkina, K. Kuznedelov, and K. Severinov The role of the largest RNA polymerase subunit lid element in preventing the formation of extended RNA-DNA hybrid Journal of Molecular Biology 361 4 2006 634 643
-
(2006)
Journal of Molecular Biology
, vol.361
, Issue.4
, pp. 634-643
-
-
Naryshkina, T.1
Kuznedelov, K.2
Severinov, K.3
-
47
-
-
79751523855
-
Synthetic RNA-protein complex shaped like an equilateral triangle
-
H. Ohno, T. Kobayashi, R. Kabata, K. Endo, T. Iwasa, and S.H. Yoshimura Synthetic RNA-protein complex shaped like an equilateral triangle Nature Nanotechnology 6 2 2011 116 120
-
(2011)
Nature Nanotechnology
, vol.6
, Issue.2
, pp. 116-120
-
-
Ohno, H.1
Kobayashi, T.2
Kabata, R.3
Endo, K.4
Iwasa, T.5
Yoshimura, S.H.6
-
48
-
-
84906679887
-
Engineering RNA-protein complexes with different shapes for imaging and therapeutic applications
-
E. Osada, Y. Suzuki, K. Hidaka, H. Ohno, H. Sugiyama, and M.E. Sugiyama Engineering RNA-protein complexes with different shapes for imaging and therapeutic applications ACS Nano 8 2014 8130 8140
-
(2014)
ACS Nano
, vol.8
, pp. 8130-8140
-
-
Osada, E.1
Suzuki, Y.2
Hidaka, K.3
Ohno, H.4
Sugiyama, H.5
Sugiyama, M.E.6
-
49
-
-
83555174809
-
Challenges and opportunities for structural DNA nanotechnology
-
A.V. Pinheiro, D. Han, W.M. Shih, and H. Yan Challenges and opportunities for structural DNA nanotechnology Nature Nanotechnology 6 12 2011 763 772
-
(2011)
Nature Nanotechnology
, vol.6
, Issue.12
, pp. 763-772
-
-
Pinheiro, A.V.1
Han, D.2
Shih, W.M.3
Yan, H.4
-
50
-
-
0030249381
-
The role of general initiation factors in transcription by RNA polymerase II
-
R.G. Roeder The role of general initiation factors in transcription by RNA polymerase II Trends in Biochemical Sciences 21 9 1996 327 335
-
(1996)
Trends in Biochemical Sciences
, vol.21
, Issue.9
, pp. 327-335
-
-
Roeder, R.G.1
-
51
-
-
22844448088
-
Functional polarity is introduced by Dicer processing of short substrate RNAs
-
S.D. Rose, D.H. Kim, M. Amarzguioui, J.D. Heidel, M.A. Collingwood, and M.E. Davis Functional polarity is introduced by Dicer processing of short substrate RNAs Nucleic Acids Research 33 13 2005 4140 4156
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.13
, pp. 4140-4156
-
-
Rose, S.D.1
Kim, D.H.2
Amarzguioui, M.3
Heidel, J.D.4
Collingwood, M.A.5
Davis, M.E.6
-
53
-
-
0026452218
-
Reconstitution of transcription with five purified initiation factors and RNA polymerase II from Saccharomyces cerevisiae
-
M.H. Sayre, H. Tschochner, and R.D. Kornberg Reconstitution of transcription with five purified initiation factors and RNA polymerase II from Saccharomyces cerevisiae Journal of Biological Chemistry 267 32 1992 23376 23382
-
(1992)
Journal of Biological Chemistry
, vol.267
, Issue.32
, pp. 23376-23382
-
-
Sayre, M.H.1
Tschochner, H.2
Kornberg, R.D.3
-
54
-
-
0020373595
-
Nucleic acid junctions and lattices
-
N.C. Seeman Nucleic acid junctions and lattices Journal of Theoretical Biology 99 2 1982 237 247
-
(1982)
Journal of Theoretical Biology
, vol.99
, Issue.2
, pp. 237-247
-
-
Seeman, N.C.1
-
55
-
-
80455154991
-
Thermodynamically stable RNA three-way junction for constructing multifunctional nanoparticles for delivery of therapeutics
-
D. Shu, Y. Shu, F. Haque, S. Abdelmawla, and P. Guo Thermodynamically stable RNA three-way junction for constructing multifunctional nanoparticles for delivery of therapeutics Nature Nanotechnology 6 10 2011 658 667
-
(2011)
Nature Nanotechnology
, vol.6
, Issue.10
, pp. 658-667
-
-
Shu, D.1
Shu, Y.2
Haque, F.3
Abdelmawla, S.4
Guo, P.5
-
56
-
-
80051509815
-
A boost for the emerging field of RNA nanotechnology
-
G.C. Shukla, F. Haque, Y. Tor, L.M. Wilhelmsson, J.-J. Toulmé, and H. Isambert A boost for the emerging field of RNA nanotechnology ACS Nano 5 5 2011 3405 3418
-
(2011)
ACS Nano
, vol.5
, Issue.5
, pp. 3405-3418
-
-
Shukla, G.C.1
Haque, F.2
Tor, Y.3
Wilhelmsson, L.M.4
Toulmé, J.-J.5
Isambert, H.6
-
57
-
-
0032113494
-
Crucial role of the RNA:DNA hybrid in the processivity of transcription
-
I. Sidorenkov, N. Komissarova, and M. Kashlev Crucial role of the RNA:DNA hybrid in the processivity of transcription Molecular Cell 2 1 1998 55 64
-
(1998)
Molecular Cell
, vol.2
, Issue.1
, pp. 55-64
-
-
Sidorenkov, I.1
Komissarova, N.2
Kashlev, M.3
-
58
-
-
84873882874
-
The fidelity of transcription: RPB1 (RPO21) mutations that increase transcriptional slippage in S. Cerevisiae
-
J. Strathern, F. Malagon, J. Irvin, D. Gotte, B. Shafer, and M. Kireeva The fidelity of transcription: RPB1 (RPO21) mutations that increase transcriptional slippage in S. cerevisiae Journal of Biological Chemistry 288 4 2013 2689 2699
-
(2013)
Journal of Biological Chemistry
, vol.288
, Issue.4
, pp. 2689-2699
-
-
Strathern, J.1
Malagon, F.2
Irvin, J.3
Gotte, D.4
Shafer, B.5
Kireeva, M.6
-
60
-
-
33746811857
-
The role of the lid element in transcription by E. Coli RNA polymerase
-
I. Toulokhonov, and R. Landick The role of the lid element in transcription by E. coli RNA polymerase Journal of Molecular Biology 361 4 2006 644 658
-
(2006)
Journal of Molecular Biology
, vol.361
, Issue.4
, pp. 644-658
-
-
Toulokhonov, I.1
Landick, R.2
-
61
-
-
34447499995
-
Structural basis for transcription elongation by bacterial RNA polymerase
-
D.G. Vassylyev, M.N. Vassylyeva, A. Perederina, T.H. Tahirov, and I. Artsimovitch Structural basis for transcription elongation by bacterial RNA polymerase Nature 448 7150 2007 157 162
-
(2007)
Nature
, vol.448
, Issue.7150
, pp. 157-162
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Perederina, A.3
Tahirov, T.H.4
Artsimovitch, I.5
-
62
-
-
1142310578
-
Structural basis of transcription: Separation of RNA from DNA by RNA polymerase II
-
K.D. Westover, D.A. Bushnell, and R.D. Kornberg Structural basis of transcription: Separation of RNA from DNA by RNA polymerase II Science 303 5660 2004 1014 1016
-
(2004)
Science
, vol.303
, Issue.5660
, pp. 1014-1016
-
-
Westover, K.D.1
Bushnell, D.A.2
Kornberg, R.D.3
-
63
-
-
0036318088
-
Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation
-
P. Wu, S. Nakano, and N. Sugimoto Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation European Journal of Biochemistry 269 12 2002 2821 2830
-
(2002)
European Journal of Biochemistry
, vol.269
, Issue.12
, pp. 2821-2830
-
-
Wu, P.1
Nakano, S.2
Sugimoto, N.3
-
64
-
-
34548147103
-
Computational design of an RNA hexagonal nanoring and an RNA nanotube
-
Y. Yingling, and B.A. Shapiro Computational design of an RNA hexagonal nanoring and an RNA nanotube Nano Letters 7 8 2007 2328 2334
-
(2007)
Nano Letters
, vol.7
, Issue.8
, pp. 2328-2334
-
-
Yingling, Y.1
Shapiro, B.A.2
-
65
-
-
78149355812
-
NUPACK: Analysis and design of nucleic acid systems
-
J.N. Zadeh, C.D. Steenberg, J.S. Bois, B.R. Wolfe, M.B. Pierce, and A.R. Khan NUPACK: Analysis and design of nucleic acid systems Journal of Computational Chemistry 32 1 2010 170 173
-
(2010)
Journal of Computational Chemistry
, vol.32
, Issue.1
, pp. 170-173
-
-
Zadeh, J.N.1
Steenberg, C.D.2
Bois, J.S.3
Wolfe, B.R.4
Pierce, M.B.5
Khan, A.R.6
-
66
-
-
84872863485
-
Nanoparticle-based delivery of RNAi therapeutics: Progress and challenges
-
J. Zhou, K.T. Shum, E. Miele, E. Di Fabrizio, E. Ferretti, and S. Tomao Nanoparticle-based delivery of RNAi therapeutics: Progress and challenges Pharmaceuticals (Basel) 6 1 2013 85 107
-
(2013)
Pharmaceuticals (Basel)
, vol.6
, Issue.1
, pp. 85-107
-
-
Zhou, J.1
Shum, K.T.2
Miele, E.3
Di Fabrizio, E.4
Ferretti, E.5
Tomao, S.6
|