메뉴 건너뛰기




Volumn 2, Issue 9, 2010, Pages 772-779

A polyhedron made of tRNAs

Author keywords

[No Author keywords available]

Indexed keywords

NANOMATERIAL; RIBONUCLEASE T1; TRANSFER RNA; MACROMOLECULE;

EID: 77956029649     PISSN: 17554330     EISSN: 17554349     Source Type: Journal    
DOI: 10.1038/nchem.733     Document Type: Article
Times cited : (171)

References (48)
  • 3
    • 48249125095 scopus 로고    scopus 로고
    • Structural principles from large RNAs
    • Holbrook, S. R. Structural principles from large RNAs. Annu. Rev. Biophys. 37, 445-464 (2008).
    • (2008) Annu. Rev. Biophys. , vol.37 , pp. 445-464
    • Holbrook, S.R.1
  • 4
    • 58549119994 scopus 로고    scopus 로고
    • The UA-handle: A versatile submotif in stable RNA architectures
    • Jaeger, L., Verzemnieks, E. J. & Geary, C. The UA-handle: a versatile submotif in stable RNA architectures. Nucleic Acids Res. 37, 215-230 (2009).
    • (2009) Nucleic Acids Res. , vol.37 , pp. 215-230
    • Jaeger, L.1    Verzemnieks, E.J.2    Geary, C.3
  • 5
    • 31344435146 scopus 로고    scopus 로고
    • RNAnanotechnology: Engineering, assembly and applications in detection, gene delivery and therapy
    • Guo, P.RNAnanotechnology: engineering, assembly and applications in detection, gene delivery and therapy. J. Nanosci. Nanotechnol. 5, 1964-1982 (2005).
    • (2005) J. Nanosci. Nanotechnol. , vol.5 , pp. 1964-1982
    • Guo, P.1
  • 6
    • 33746655784 scopus 로고    scopus 로고
    • The architectonics of programmable RNA and DNA nanostructures
    • Jaeger, L. & Chworos, A. The architectonics of programmable RNA and DNA nanostructures. Curr. Opin. Struct. Biol. 16, 531-543 (2006).
    • (2006) Curr. Opin. Struct. Biol. , vol.16 , pp. 531-543
    • Jaeger, L.1    Chworos, A.2
  • 7
    • 58549095416 scopus 로고    scopus 로고
    • Computational and experimental RNA nanoparticle design
    • (eds Alterovitz, G., Ramoni, M. & Benson, R. M.) (Wiley)
    • Severcan, I. et al. Computational and experimental RNA nanoparticle design, in Automation in Genomics and Proteomics: An Engineering Case Based Approach (eds Alterovitz, G., Ramoni, M. & Benson, R. M.) 193-220 (Wiley, 2009).
    • (2009) Automation in Genomics and Proteomics: An Engineering Case Based Approach , pp. 193-220
    • Severcan, I.1
  • 8
    • 0034679465 scopus 로고    scopus 로고
    • Tecto-RNA: One-dimensional self-assembly through tertiary interactions
    • Jaeger, L. & Leontis, N. B. Tecto-RNA: one-dimensional self-assembly through tertiary interactions. Angew. Chem. Int. Ed. 14, 2521-2524 (2000).
    • (2000) Angew. Chem. Int. Ed. , vol.14 , pp. 2521-2524
    • Jaeger, L.1    Leontis, N.B.2
  • 9
    • 0035863772 scopus 로고    scopus 로고
    • TectoRNA: Modular assembly units for the construction of RNA nano-objects
    • Jaeger, L., Westhof, E. & Leontis, N. B. TectoRNA: modular assembly units for the construction of RNA nano-objects. Nucleic Acids Res. 29, 455-463 (2001).
    • (2001) Nucleic Acids Res. , vol.29 , pp. 455-463
    • Jaeger, L.1    Westhof, E.2    Leontis, N.B.3
  • 10
    • 2342493879 scopus 로고    scopus 로고
    • Construction of phi29 DNApackaging RNA monomers, dimers and trimers with variable sizes and shapes as potential parts for nanodevices
    • Shu, D., Huang, L. P., Hoeprich, S. & Guo, P. Construction of phi29 DNApackaging RNA monomers, dimers and trimers with variable sizes and shapes as potential parts for nanodevices. J. Nanosci. Nanotechnol. 3, 295-302 (2003).
    • (2003) J. Nanosci. Nanotechnol. , vol.3 , pp. 295-302
    • Shu, D.1    Huang, L.P.2    Hoeprich, S.3    Guo, P.4
  • 11
    • 0042631224 scopus 로고    scopus 로고
    • RNA LEGO: Magnesium-dependent formation of specific RNA assemblies through kissing interactions
    • Horiya, S. et al. RNA LEGO: magnesium-dependent formation of specific RNA assemblies through kissing interactions. Chem. Biol. 10, 645-654 (2003).
    • (2003) Chem. Biol. , vol.10 , pp. 645-654
    • Horiya, S.1
  • 12
    • 10844257474 scopus 로고    scopus 로고
    • Building programmable jigsaw puzzles with RNA
    • Chworos, A. et al. Building programmable jigsaw puzzles with RNA. Science 306, 2068-2072 (2004).
    • (2004) Science , vol.306 , pp. 2068-2072
    • Chworos, A.1
  • 13
    • 24944565527 scopus 로고    scopus 로고
    • Controllable self-assembly of nanoparticles for specific delivery of multiple therapeutic molecules to cancer cells using RNA nanotechnology
    • Khaled, A., Guo, S., Li, F. & Guo, P. Controllable self-assembly of nanoparticles for specific delivery of multiple therapeutic molecules to cancer cells using RNA nanotechnology. Nano Lett. 5, 1797 - 1808 (2005).
    • (2005) Nano Lett. , vol.5 , pp. 1797-1808
    • Khaled, A.1    Guo, S.2    Li, F.3    Guo, P.4
  • 15
    • 4644326818 scopus 로고    scopus 로고
    • Bottom-up assembly of RNA arrays and superstructures as potential parts in nanotechnology
    • Shu, D., Moll, W. D., Deng, Z., Mao, C. & Guo, P. Bottom-up assembly of RNA arrays and superstructures as potential parts in nanotechnology. Nano Lett. 4, 1717-1723 (2004).
    • (2004) Nano Lett. , vol.4 , pp. 1717-1723
    • Shu, D.1    Moll, W.D.2    Deng, Z.3    Mao, C.4    Guo, P.5
  • 16
    • 24144470073 scopus 로고    scopus 로고
    • Controlled spacing of cationic gold nanoparticles by nanocrown RNA
    • Koyfman, A. Y. et al. Controlled spacing of cationic gold nanoparticles by nanocrown RNA. J. Am. Chem. Soc. 127, 11886-11887 (2005).
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 11886-11887
    • Koyfman, A.Y.1
  • 18
    • 24944512987 scopus 로고    scopus 로고
    • Specific delivery of therapeutic RNAs to cancer cells via the dimerization mechanism of phi29 motor pRNA
    • Guo, S., Tschammer, N., Mohammed, S. & Guo, P. Specific delivery of therapeutic RNAs to cancer cells via the dimerization mechanism of phi29 motor pRNA. Hum. Gene. Ther. 16, 1097-1109 (2005).
    • (2005) Hum. Gene. Ther. , vol.16 , pp. 1097-1109
    • Guo, S.1    Tschammer, N.2    Mohammed, S.3    Guo, P.4
  • 19
    • 70349974919 scopus 로고    scopus 로고
    • Evaluation of specific delivery of chimeric phi29 pRNA/siRNA nanoparticles to multiple tumor cells
    • Li, L. et al. Evaluation of specific delivery of chimeric phi29 pRNA/siRNA nanoparticles to multiple tumor cells. Mol. Biosyst. 5, 1361-1368 (2009).
    • (2009) Mol. Biosyst. , vol.5 , pp. 1361-1368
    • Li, L.1
  • 20
    • 0028105601 scopus 로고
    • The 2.9 A crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNA(Ser)
    • Biou, V., Yaremchuk, A., Tukalo, M. & Cusack, S. The 2.9 A crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNA(Ser). Science 263, 1404-1410 (1994).
    • (1994) Science , vol.263 , pp. 1404-1410
    • Biou, V.1    Yaremchuk, A.2    Tukalo, M.3    Cusack, S.4
  • 21
    • 34548690780 scopus 로고    scopus 로고
    • Indirect readout of tRNA for aminoacylation
    • Perona, J. J. & Hou, Y. M. Indirect readout of tRNA for aminoacylation. Biochemistry 46, 10419-10432 (2007).
    • (2007) Biochemistry , vol.46 , pp. 10419-10432
    • Perona, J.J.1    Hou, Y.M.2
  • 22
    • 0346341029 scopus 로고    scopus 로고
    • TectoRNA and 'kissingloop' RNA: Atomic force microscopy of self-assembling RNA structures
    • Hansma, H. G., Oroudjev, E., Baudrey, S. & Jaeger, L. TectoRNA and 'kissingloop' RNA: atomic force microscopy of self-assembling RNA structures. J. Microsc. 212, 273-279 (2003).
    • (2003) J. Microsc. , vol.212 , pp. 273-279
    • Hansma, H.G.1    Oroudjev, E.2    Baudrey, S.3    Jaeger, L.4
  • 23
    • 1342325559 scopus 로고    scopus 로고
    • A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron
    • Shih,W. M., Quispe, J. D. & Joyce, G. F. A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron. Nature 427, 618-621 (2004).
    • (2004) Nature , vol.427 , pp. 618-621
    • Shih, W.M.1    Quispe, J.D.2    Joyce, G.F.3
  • 24
    • 40749140401 scopus 로고    scopus 로고
    • Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra
    • He, Y. et al. Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra. Nature 452, 198-201 (2008).
    • (2008) Nature , vol.452 , pp. 198-201
    • He, Y.1
  • 25
    • 67650345813 scopus 로고    scopus 로고
    • High-resolution structural analysis of a DNA nanostructure by cryoEM
    • Kato, T., Goodman, R. P., Erben, C. M., Turberfield, A. J. & Namba, K. High-resolution structural analysis of a DNA nanostructure by cryoEM. Nano Lett. 9, 2747-2750 (2009).
    • (2009) Nano Lett. , vol.9 , pp. 2747-2750
    • Kato, T.1    Goodman, R.P.2    Erben, C.M.3    Turberfield, A.J.4    Namba, K.5
  • 26
    • 0033377664 scopus 로고    scopus 로고
    • EMAN: Semiautomated software for high-resolution single-particle reconstructions
    • Ludtke, S. J., Baldwin, P. R. & Chiu, W. EMAN: semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol. 128, 82-97 (1999).
    • (1999) J. Struct. Biol. , vol.128 , pp. 82-97
    • Ludtke, S.J.1    Baldwin, P.R.2    Chiu, W.3
  • 27
    • 0024588901 scopus 로고
    • Structural origins of high-affinity biotin binding to streptavidin
    • Weber, P. C., Ohlendorf, D. H., Wendoloski, J. J. & Salemme, F. R. Structural origins of high-affinity biotin binding to streptavidin. Science 243, 85-88 (1989).
    • (1989) Science , vol.243 , pp. 85-88
    • Weber, P.C.1    Ohlendorf, D.H.2    Wendoloski, J.J.3    Salemme, F.R.4
  • 28
    • 33744482023 scopus 로고    scopus 로고
    • The highresolution structure of (+)-epi-biotin bound to streptavidin
    • Le Trong, I., Aubert, D. G., Thomas, N. R. & Stenkamp, R. E. The highresolution structure of (+)-epi-biotin bound to streptavidin. Acta Crystallogr. D 62, 576-581 (2006).
    • (2006) Acta Crystallogr. D , vol.62 , pp. 576-581
    • Le Trong, I.1    Aubert, D.G.2    Thomas, N.R.3    Stenkamp, R.E.4
  • 29
    • 33748543987 scopus 로고    scopus 로고
    • DNA enables nanoscale control of the structure of matter
    • Seeman, N. C. DNA enables nanoscale control of the structure of matter. Q. Rev. Biophys. 38, 363-371 (2006).
    • (2006) Q. Rev. Biophys. , vol.38 , pp. 363-371
    • Seeman, N.C.1
  • 30
    • 36949030704 scopus 로고    scopus 로고
    • An overview of structural DNA nanotechnology
    • Seeman, N. C. An overview of structural DNA nanotechnology. Mol. Biotechnol. 37, 246-257 (2007).
    • (2007) Mol. Biotechnol. , vol.37 , pp. 246-257
    • Seeman, N.C.1
  • 31
    • 35948960658 scopus 로고    scopus 로고
    • Modular access to structurally switchable 3D discrete DNA assemblies
    • Aldaye, F. A. & Sleiman, H. F. Modular access to structurally switchable 3D discrete DNA assemblies. J. Am. Chem. Soc. 129, 13376-13377 (2007).
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 13376-13377
    • Aldaye, F.A.1    Sleiman, H.F.2
  • 32
    • 1542345305 scopus 로고    scopus 로고
    • Tensegrity: Construction of rigid DNA triangles with flexible four-arm DNA junctions
    • Liu, D., Wang, M., Deng, Z., Walulu, R. & Mao, C. Tensegrity: construction of rigid DNA triangles with flexible four-arm DNA junctions. J. Am. Chem. Soc. 126, 2324-2325 (2004).
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 2324-2325
    • Liu, D.1    Wang, M.2    Deng, Z.3    Walulu, R.4    Mao, C.5
  • 33
    • 28844463033 scopus 로고    scopus 로고
    • Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication
    • Goodman, R. P. et al. Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication. Science 310, 1661-1665 (2005).
    • (2005) Science , vol.310 , pp. 1661-1665
    • Goodman, R.P.1
  • 34
    • 69949109573 scopus 로고    scopus 로고
    • From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal
    • Zheng, J. et al. From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal. Nature 461, 74-77 (2009).
    • (2009) Nature , vol.461 , pp. 74-77
    • Zheng, J.1
  • 35
    • 68449088261 scopus 로고    scopus 로고
    • Folding DNA into twisted and curved nanoscale shapes
    • Dietz, H., Douglas, S. M. & Shih, W. M. Folding DNA into twisted and curved nanoscale shapes. Science 325, 725-730 (2009).
    • (2009) Science , vol.325 , pp. 725-730
    • Dietz, H.1    Douglas, S.M.2    Shih, W.M.3
  • 36
    • 18144405373 scopus 로고    scopus 로고
    • Six-helix bundles designed from DNA
    • Mathieu, F. et al. Six-helix bundles designed from DNA. Nano Lett. 5, 661-665 (2005).
    • (2005) Nano Lett. , vol.5 , pp. 661-665
    • Mathieu, F.1
  • 37
    • 33645028600 scopus 로고    scopus 로고
    • Folding DNA to create nanoscale shapes and patterns
    • Rothemund, P.W. Folding DNA to create nanoscale shapes and patterns. Nature 440, 297-302 (2006).
    • (2006) Nature , vol.440 , pp. 297-302
    • Rothemund, P.W.1
  • 38
    • 69049083403 scopus 로고    scopus 로고
    • Prototyping nanorod control: A DNA double helix sheathed within a DNA six-helix bundle
    • Wang, R., Liu,W. & Seeman, N. C. Prototyping nanorod control: a DNA double helix sheathed within a DNA six-helix bundle. Chem. Biol. 16, 862-867 (2009).
    • (2009) Chem. Biol. , vol.16 , pp. 862-867
    • Wang, R.1    Liu, W.2    Seeman, N.C.3
  • 39
    • 66249137759 scopus 로고    scopus 로고
    • Self-assembly of DNA into nanoscale three-dimensional shapes
    • Douglas, S. M. et al. Self-assembly of DNA into nanoscale three-dimensional shapes. Nature 459, 414-418 (2009).
    • (2009) Nature , vol.459 , pp. 414-418
    • Douglas, S.M.1
  • 40
    • 65549170920 scopus 로고    scopus 로고
    • Self-assembly of a nanoscale DNA box with a controllable lid
    • Andersen, E. S. et al. Self-assembly of a nanoscale DNA box with a controllable lid. Nature 459, 73-76 (2009).
    • (2009) Nature , vol.459 , pp. 73-76
    • Andersen, E.S.1
  • 41
    • 66749192694 scopus 로고    scopus 로고
    • Scaffolded DNA origami of a DNA tetrahedron molecular container
    • Ke, Y. et al. Scaffolded DNA origami of a DNA tetrahedron molecular container. Nano Lett. 9, 2445-2447 (2009).
    • (2009) Nano Lett. , vol.9 , pp. 2445-2447
    • Ke, Y.1
  • 42
    • 67650422464 scopus 로고    scopus 로고
    • Design and construction of a box-shaped 3D-DNA origami
    • Kuzuya, A. & Komiyama, M. Design and construction of a box-shaped 3D-DNA origami. Chem. Commun. 4182-4184 (2009).
    • (2009) Chem. Commun. , pp. 4182-4184
    • Kuzuya, A.1    Komiyama, M.2
  • 43
    • 34848895990 scopus 로고    scopus 로고
    • RNA and RNP as new molecular parts in synthetic biology
    • Saito, H. & Inoue, T. RNA and RNP as new molecular parts in synthetic biology. J. Biotechnol. 132, 1-7 (2007).
    • (2007) J. Biotechnol. , vol.132 , pp. 1-7
    • Saito, H.1    Inoue, T.2
  • 44
  • 45
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 46
    • 1842502985 scopus 로고    scopus 로고
    • Characterization of tectoRNA assembly with cationic conjugated polymers
    • Liu, B., Baudrey, S., Jaeger, L. & Bazan, G. C. Characterization of tectoRNA assembly with cationic conjugated polymers. J. Am. Chem. Soc. 126, 4076-4077 (2004).
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 4076-4077
    • Liu, B.1    Baudrey, S.2    Jaeger, L.3    Bazan, G.C.4
  • 47
    • 20544468931 scopus 로고    scopus 로고
    • Automated molecular microscopy: The new Leginon system
    • Suloway, C. et al. Automated molecular microscopy: the new Leginon system. J. Struct. Biol. 151, 41-60 (2005).
    • (2005) J. Struct. Biol. , vol.151 , pp. 41-60
    • Suloway, C.1
  • 48
    • 60649103238 scopus 로고    scopus 로고
    • Appion: An integrated, database-driven pipeline to facilitate em image processing
    • Lander, G. C. et al. Appion: an integrated, database-driven pipeline to facilitate EM image processing. J. Struct. Biol. 166, 95-102 (2009).
    • (2009) J. Struct. Biol. , vol.166 , pp. 95-102
    • Lander, G.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.