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Volumn 22, Issue 6, 2012, Pages 428-437

Fluorogenic RNA nanoparticles for monitoring RNA folding and degradation in real time in living cells

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER; MICRORNA; NANOPARTICLE; RNA; SMALL INTERFERING RNA;

EID: 84870518918     PISSN: 21593337     EISSN: None     Source Type: Journal    
DOI: 10.1089/nat.2012.0380     Document Type: Article
Times cited : (29)

References (41)
  • 1
    • 79959937835 scopus 로고    scopus 로고
    • Pharmacological characterization of chemically synthesized monomeric pRNA nanoparticles for systemic delivery
    • ABDELMAWLA, S., GUO, S., ZHANG, L., PULUKURI, S., PATANKAR, P., CONLEY, P., TREBLEY, J., GUO, P., and LI, Q.X. (2011). Pharmacological characterization of chemically synthesized monomeric pRNA nanoparticles for systemic delivery. Mol. Ther. 19, 1312-1322.
    • (2011) Mol. Ther , vol.19 , pp. 1312-1322
    • Abdelmawla, S.1    Guo, S.2    Zhang, L.3    Pulukuri, S.4    Patankar, P.5    Conley, P.6    Trebley, J.7    Guo, P.8    X, L.I.Q.9
  • 3
    • 0034604296 scopus 로고    scopus 로고
    • 2.8 A crystal structure of the malachite green aptamer
    • BAUGH, C., GRATE, D., and WILSON, C. (2000). 2.8 A crystal structure of the malachite green aptamer. J. Mol. Biol. 301, 117-128.
    • (2000) J. Mol. Biol , vol.301 , pp. 117-128
    • Baugh, C.1    Grate, D.2    Wilson, C.3
  • 4
    • 0037134020 scopus 로고    scopus 로고
    • A system for stable expression of short interfering RNAs in mammalian cells
    • DOI 10.1126/science.1068999
    • BRUMMELKAMP, T.R., BERNARDS, R., and AGAMI, R. (2002). A system for stable expression of short interfering RNAs in mammalian cells. Science 296, 550-553. (Pubitemid 34408678)
    • (2002) Science , vol.296 , Issue.5567 , pp. 550-553
    • Brummelkamp, T.R.1    Bernards, R.2    Agami, R.3
  • 5
    • 0037173379 scopus 로고    scopus 로고
    • Medicine: Silencing viruses with RNA
    • CARMICHAEL, G.G. (2002). Medicine: silencing viruses with RNA. Nature 418, 379-380.
    • (2002) Nature , vol.418 , pp. 379-380
    • Carmichael, G.G.1
  • 6
    • 0032981057 scopus 로고    scopus 로고
    • Sequence requirement for hand-in-hand interaction in formation of RNA dimers and hexamers to gear φ29 DNA translocation motor
    • DOI 10.1017/S1355838299990350
    • CHEN, C., ZHANG, C., and GUO, P. (1999). Sequence requirement for hand-in-hand interaction in formation of pRNA dimers and hexamers to gear phi29 DNA translocation motor. RNA 5, 805-818. (Pubitemid 29283782)
    • (1999) RNA , vol.5 , Issue.6 , pp. 805-818
    • Chen, C.1    Zhang, C.2    Guo, P.3
  • 7
    • 42449155819 scopus 로고    scopus 로고
    • RNA folding: Conformational statistics, folding kinetics, and ion electrostatics
    • CHEN, S.J. (2008). RNA folding: conformational statistics, folding kinetics, and ion electrostatics. Annu. Rev. Biophys. 37, 197-214.
    • (2008) Annu. Rev. Biophys , vol.37 , pp. 197-214
    • Chen, S.J.1
  • 8
    • 0025932338 scopus 로고
    • Novel guanosine requirement for catalysis by the hairpin ribozyme
    • CHOWRIRA, B.M., BERZAL-HERRANZ, A., and BURKE, J.M. (1991). Novel guanosine requirement for catalysis by the hairpin ribozyme. Nature 354, 320-322. (Pubitemid 21896887)
    • (1991) Nature , vol.354 , Issue.6351 , pp. 320-322
    • Chowrira, B.M.1    Berzal-Herranz, A.2    Burke, J.M.3
  • 10
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • ELLINGTON, A.D., and SZOSTAK, J.W. (1990). In vitro selection of RNA molecules that bind specific ligands. Nature 346, 818-822.
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 11
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in caenorhabditis elegans
    • DOI 10.1038/35888
    • FIRE, A., XU, S., MONTGOMERY, M.K., KOSTAS, S.A., DRIVER, S.E., and MELLO, C.C. (1998). Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391, 806-811. (Pubitemid 28099681)
    • (1998) Nature , vol.391 , Issue.6669 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 12
    • 0021013526 scopus 로고
    • The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
    • GUERRIER-TAKADA, C., GARDINER, K., MARSH, T., PACE, N., and ALTMAN, S. (1983). The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35, 849-857. (Pubitemid 14168384)
    • (1983) Cell , vol.35 , Issue.3 , pp. 849-857
    • Guerrier-Takada, C.1    Gardiner, K.2    Marsh, T.3
  • 13
    • 31344435146 scopus 로고    scopus 로고
    • RNA nanotechnology: Engineering, assembly and applications in detection, gene delivery and therapy
    • DOI 10.1166/jnn.2005.446
    • GUO, P. (2005). RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy. J. Nanosci. Nanotechnol. 5(12), 1964-1982. (Pubitemid 44874820)
    • (2005) Journal of Nanoscience and Nanotechnology , vol.5 , Issue.12 , pp. 1964-1982
    • Guo, P.1
  • 14
    • 78649985789 scopus 로고    scopus 로고
    • The emerging field of RNA nanotechnology
    • GUO, P. (2010). The emerging field of RNA nanotechnology. Nat. Nanotechnol. 5, 833-842.
    • (2010) Nat. Nanotechnol , vol.5 , pp. 833-842
    • Guo, P.1
  • 15
    • 0023225629 scopus 로고
    • A small viral RNA is required for in vitro packaging of bacteriophage Φ29 DNA
    • GUO, P., ERICKSON, S., and ANDERSON, D. (1987). A small viral RNA is required for in vitro packaging of bacteriophage phi29 DNA. Science 236, 690-694. (Pubitemid 17076855)
    • (1987) Science , vol.236 , Issue.4802 , pp. 690-694
    • Guo, P.1    Erickson, S.2    Anderson, D.3
  • 16
    • 0032110708 scopus 로고    scopus 로고
    • Inter-RNA interaction of phage θ29 pRNA to form a hexameric complex for viral DNA transportation
    • GUO, P., ZHANG, C., CHEN, C., TROTTIER, M., and GARVER, K. (1998). Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation. Mol. Cell 2, 149-155. (Pubitemid 128378977)
    • (1998) Molecular Cell , vol.2 , Issue.1 , pp. 149-155
    • Guo, P.1    Zhang, C.2    Chen, C.3    Garver, K.4    Trottier, M.5
  • 17
    • 84865436732 scopus 로고    scopus 로고
    • Uniqueness, advantages, challenges, solutions, and perspectives in therapeutics applying RNA nanotechnology
    • GUO, P., HAQUE, F., HALLAHAN, B., REIF, R., LI, H. (2012). Uniqueness, advantages, challenges, solutions, and perspectives in therapeutics applying RNA nanotechnology. Nucleic Acid Ther. 22, 226-245.
    • (2012) Nucleic Acid Ther , vol.22 , pp. 226-245
    • Guo, P.1    Haque, F.2    Hallahan, B.3    Reif, R.4    H, L.I.5
  • 18
    • 24944512987 scopus 로고    scopus 로고
    • Specific delivery of therapeutic RNAs to cancer cells via the dimerization mechanism of phi29 motor pRNA
    • DOI 10.1089/hum.2005.16.1097
    • GUO, S., TSCHAMMER, N., MOHAMMED, S., and GUO, P. (2005). Specific delivery of therapeutic RNAs to cancer cells via the dimerization mechanism of phi29 motor pRNA. Hum. Gene Ther. 16, 1097-1109. (Pubitemid 41324569)
    • (2005) Human Gene Therapy , vol.16 , Issue.9 , pp. 1097-1109
    • Guo, S.1    Tschammer, N.2    Mohammed, S.3    Guo, P.4
  • 19
    • 33646356236 scopus 로고    scopus 로고
    • Construction of folate-conjugated pRNA of bacteriophage phi29 DNA packaging motor for delivery of chimeric siRNA to nasopharyngeal carcinoma cells
    • GUO, S., HUANG, F., and GUO, P. (2006). Construction of folate-conjugated pRNA of bacteriophage phi29 DNA packaging motor for delivery of chimeric siRNA to nasopharyngeal carcinoma cells. Gene Ther. 13, 814-820.
    • (2006) Gene Ther , vol.13 , pp. 814-820
    • Guo, S.1    Huang, F.2    Guo, P.3
  • 20
    • 0346341029 scopus 로고    scopus 로고
    • TectoRNA and 'kissing-loop' RNA: Atomic force microscopy of self-assembling RNA structures
    • DOI 10.1111/j.1365-2818.2003.01276.x
    • HANSMA, H.G., OROUDJEV, E., BAUDREY, S., and JAEGER, L. (2003). TectoRNA and 'kissing-loop' RNA: atomic force microscopy of self-assembling RNA structures. J. Microsc. 212, 273-279. (Pubitemid 38028525)
    • (2003) Journal of Microscopy , vol.212 , Issue.3 , pp. 273-279
    • Hansma, H.G.1    Oroudjev, E.2    Baudrey, S.3    Jaeger, L.4
  • 21
    • 84865784936 scopus 로고    scopus 로고
    • Ultrastable synergistic tetravalent RNA nanoparticles for targeting to cancers
    • HAQUE, F., SHU, D., SHU, Y., SHLYAKHTENKO, L., RYCHAHOU, P., EVERS, B.M., GUO, P. (2012). Ultrastable synergistic tetravalent RNA nanoparticles for targeting to cancers. Nano Today. 7, 245-257.
    • (2012) Nano Today , vol.7 , pp. 245-257
    • Haque, F.1    Shu, D.2    Shu, Y.3    Shlyakhtenko, L.4    Rychahou, P.5    Evers, B.M.6    Guo, P.7
  • 22
    • 0042172858 scopus 로고    scopus 로고
    • Bacterial virus phi29 pRNA as a hammerhead ribozyme escort to destroy hepatitis B virus
    • DOI 10.1038/sj.gt.3302002
    • HOEPRICH, S., ZHOU, Q., GUO, S., QI, G., WANG, Y., and GUO, P. (2003). Bacterial virus phi29 pRNA as a hammerhead ribozyme escort to destroy hepatitis B virus. Gene Ther. 10, 1258-1267. (Pubitemid 36934728)
    • (2003) Gene Therapy , vol.10 , Issue.15 , pp. 1258-1267
    • Heoprich, S.1    Zhou, Q.2    Guo, S.3    Shu, D.4    Qi, G.5    Wang, Y.6    Guo, P.7
  • 23
    • 33746655784 scopus 로고    scopus 로고
    • The architectonics of programmable RNA and DNA nanostructures
    • DOI 10.1016/j.sbi.2006.07.001, PII S0959440X06001187
    • JAEGER, L., and CHWOROS, A. (2006). The architectonics of programmable RNA and DNA nanostructures. Curr. Opin. Struct. Biol. 16, 531-543. (Pubitemid 44149075)
    • (2006) Current Opinion in Structural Biology , vol.16 , Issue.4 , pp. 531-543
    • Jaeger, L.1    Chworos, A.2
  • 24
    • 0034679465 scopus 로고    scopus 로고
    • Tecto-RNA: One-dimensional self-assembly through tertiary interactions
    • DOI 10.1002/1521-3773(20000717)39:14<2521::AID-ANIE2521>3.0.CO;2-P
    • JAEGER, L., and LEONTIS, N.B. (2000). Tecto-RNA: one dimensional self-assembly through tertiary interactions. Angew. Chem. Int. Ed. Engl. 39, 2521-2524. (Pubitemid 30602533)
    • (2000) Angewandte Chemie - International Edition , vol.39 , Issue.14 , pp. 2521-2524
    • Jaeger, L.1    Leontis, N.B.2
  • 25
    • 0035863772 scopus 로고    scopus 로고
    • TectoRNA: Modular assembly units for the construction of RNA nano-objects
    • JAEGER, L., WESTHOF, E., and LEONTIS, N.B. (2001). TectoRNA: modular assembly units for the construction of RNA nano-objects. Nucleic Acids Res. 29, 455-463. (Pubitemid 32060932)
    • (2001) Nucleic Acids Research , vol.29 , Issue.2 , pp. 455-463
    • Jaeger, L.1    Westhof, E.2    Leontis, N.B.3
  • 26
    • 24944565527 scopus 로고    scopus 로고
    • Controllable self-assembly of nanoparticles for specific delivery of multiple therapeutic molecules to cancer cells using RNA nanotechnology
    • DOI 10.1021/nl051264s
    • KHALED, A., GUO, S., LI, F., and GUO, P. (2005). Controllable self-assembly of nanoparticles for specific delivery of multiple therapeutic molecules to cancer cells using RNA nanotechnology. Nano Lett. 5, 1797-1808. (Pubitemid 41396168)
    • (2005) Nano Letters , vol.5 , Issue.9 , pp. 1797-1808
    • Khaled, A.1    Guo, S.2    Li, F.3    Guo, P.4
  • 27
    • 0020417286 scopus 로고
    • Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena
    • KRUGER, K., GRABOWSKI, P.J., ZAUG, A.J., SANDS, J., GOTTSCHLING, D.E., and CECH, T.R. (1982). Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena. Cell 31, 147-157. (Pubitemid 13215202)
    • (1982) Cell , vol.31 , Issue.1 , pp. 147-157
    • Kruger, K.1    Grabowski, P.J.2    Zaug, A.J.3
  • 28
    • 0037123630 scopus 로고    scopus 로고
    • Induction and suppression of RNA silencing by an animal virus
    • DOI 10.1126/science.1070948
    • LI, H., LI, W.X., and DING, S.W. (2002). Induction and suppression of RNA silencing by an animal virus. Science 296, 1319-1321. (Pubitemid 34522787)
    • (2002) Science , vol.296 , Issue.5571 , pp. 1319-1321
    • Li, H.1    Li, W.X.2    Ding, S.W.3
  • 29
    • 79955115072 scopus 로고    scopus 로고
    • Fabrication of stable and RNase-resistant RNA nanoparticles active in gearing the nanomotors for viral DNA packaging
    • LIU, J., GUO, S., CINIER, M., SHLYAKHTENKO, L., SHU, Y., CHEN, C., SHEN, G., and GUO, P. (2010). Fabrication of stable and RNase-resistant RNA nanoparticles active in gearing the nanomotors for viral DNA packaging. ACS Nano 5, 237-246.
    • (2010) ACS Nano , vol.5 , pp. 237-246
    • Liu, J.1    Guo, S.2    Cinier, M.3    Shlyakhtenko, L.4    Shu, Y.5    Chen, C.6    Shen, G.7    Guo, P.8
  • 30
    • 46349099944 scopus 로고    scopus 로고
    • High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis
    • MITRA, S., SHCHERBAKOVA, I.V., ALTMAN, R.B., BRENOWITZ, M., and LAEDERACH, A. (2008). High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis. Nucleic Acids Res. 36, e63.
    • (2008) Nucleic Acids Res , vol.36
    • Mitra, S.1    Shcherbakova, I.V.2    Altman, R.B.3    Brenowitz, M.4    Laederach, A.5
  • 32
    • 79960959180 scopus 로고    scopus 로고
    • RNA mimics of green fluorescent protein
    • PAIGE, J.S., WU, K.Y., and JAFFREY, S.R. (2011). RNA mimics of green fluorescent protein. Science 333, 642-646.
    • (2011) Science , vol.333 , pp. 642-646
    • Paige, J.S.1    Y, W.U.K.2    Jaffrey, S.R.3
  • 34
    • 2342493879 scopus 로고    scopus 로고
    • Construction of phi29 DNA-packaging RNA monomers, dimers, and trimers with variable sizes and shapes as potential parts for nanodevices
    • DOI 10.1166/jnn.2003.160, 10th Foresight Conference on Molecular Nanotechnology
    • SHU, D., HUANG, L., HOEPRICH, S., and GUO, P. (2003). Construction of phi29 DNA-packaging RNA (pRNA) monomers, dimers and trimers with variable sizes and shapes as potential parts for nano-devices. J. Nanosci. Nanotechnol. 3, 295-302. (Pubitemid 38597291)
    • (2003) Journal of Nanoscience and Nanotechnology , vol.3 , Issue.4 , pp. 295-302
    • Shu, D.1    Huang, L.P.2    Hoeprich, S.3    Guo, P.4
  • 35
    • 4644326818 scopus 로고    scopus 로고
    • Bottom-up assembly of RNA arrays and superstructures as potential parts in nanotechnology
    • DOI 10.1021/nl0494497
    • SHU, D., MOLL, W.D., DENG, Z., MAO, C., and GUO, P. (2004). Bottom-up assembly of RNA arrays and superstructures as potential parts in nanotechnology. Nano Lett. 4, 1717-1723. (Pubitemid 39297452)
    • (2004) Nano Letters , vol.4 , Issue.9 , pp. 1717-1723
    • Shu, D.1    Moll, W.-D.2    Deng, Z.3    Mao, C.4    Guo, P.5
  • 36
    • 80455154991 scopus 로고    scopus 로고
    • Thermodynamically stable RNA three-way junctions as platform for constructing multifunctional nanoparticles for delivery of therapeutics
    • SHU, D., SHU, Y., HAQUE, F., ABDELMAWLA, S., and GUO, P. (2011). Thermodynamically stable RNA three-way junctions as platform for constructing multifunctional nanoparticles for delivery of therapeutics. Nat. Nanotechnol. 6, 658-667.
    • (2011) Nat. Nanotechnol , vol.6 , pp. 658-667
    • Shu, D.1    Shu, Y.2    Haque, F.3    Abdelmawla, S.4    Guo, P.5
  • 37
    • 79960023588 scopus 로고    scopus 로고
    • Assembly of Therapeutic pRNA-siRNA Nanoparticles Using Bipartite Approach
    • SHU, Y., CINIER, M., FOX, S.R., BEN-JOHNATHAN, N., and GUO, P. (2011). Assembly of Therapeutic pRNA-siRNA Nanoparticles Using Bipartite Approach. Mol. Ther. 19, 1304-1311.
    • (2011) Mol. Ther , vol.19 , pp. 1304-1311
    • Shu, Y.1    Cinier, M.2    Fox, S.R.3    Ben-Johnathan, N.4    Guo, P.5
  • 38
    • 77950451235 scopus 로고    scopus 로고
    • An RNA-aptamer-based assay for the detection and analysis of malachite green and leucomalachite green residues in fish tissue
    • STEAD, S.L., ASHWIN, H., JOHNSTON, B., DALLAS, A., KAZAKOV, S.A., TARBIN, J.A., SHARMAN, M., KAY, J., and KEELY, B.J. (2010). An RNA-aptamer-based assay for the detection and analysis of malachite green and leucomalachite green residues in fish tissue. Anal. Chem. 82, 2652-2660.
    • (2010) Anal. Chem , vol.82 , pp. 2652-2660
    • Stead, S.L.1    Ashwin, H.2    Johnston, B.3    Dallas, A.4    Kazakov, S.A.5    Tarbin, J.A.6    Sharman, M.7    Kay, J.8    Keely, B.J.9
  • 39
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • TUERK, C., and GOLD, L. (1990). Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249, 505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 40
    • 75649115391 scopus 로고    scopus 로고
    • Label-free fluorescent aptamer sensor based on regulation of malachite green fluorescence
    • XU, W., and LU, Y. (2010). Label-free fluorescent aptamer sensor based on regulation of malachite green fluorescence. Anal. Chem. 82, 574-578.
    • (2010) Anal. Chem , vol.82 , pp. 574-578
    • W, X.U.1    Y, L.U.2


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