Probing the structure of monomers and dimers of the bacterial virus phi29 hexamer RNA complex by chemical modification

RNA

Volumn 6, Issue 9, 2000, Pages 1257-1266

  Trottier, Mark ^a,d   Mat Arip, Yahya ^a   Zhang, Chunlin ^a,e   Chen, Chaoping ^a,f   Sheng, Sitong ^b   Shao, Zhifeng ^b   Guo, Peixuan ^a,c  

^a PURDUE UNIVERSITY   (United States)

^b UNIVERSITY OF VIRGINIA   (United States)

^c Purdue University   (United States)

^d EVANSTON HOSPITAL   (United States)

^e WALTER REED ARMY INSTITUTE OF RESEARCH   (United States)

^f UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE   (United States)

Author keywords

Bacteriophage phi29; Chemical modification; Dimer formation; DNA packaging; Hand in hand interaction; pRNA; RNA structure; Virus assembly

Indexed keywords

BACTERIAL RNA; DIMER; DNA; DOUBLE STRANDED DNA; MAGNESIUM; MONOMER;

ARTICLE; BACTERIOPHAGE; CHEMICAL MODIFICATION; DNA PACKAGING; GENE INSERTION; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; RNA STRUCTURE; VIRUS ASSEMBLY; VIRUS CAPSID;

BACILLUS PHAGES; BIOPOLYMERS; DIMERIZATION; MAGNESIUM; MICROSCOPY, ATOMIC FORCE; NUCLEIC ACID CONFORMATION; RNA, VIRAL;

EID: 0033834945     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838200992501     Document Type: Article

References (38)

1. Magnesium-induced conformational change of packaging RNA for procapsid recognition and binding during phage phi29 DNA encapsidation
2. Sequential action of six DNA-packing pRNAs during phage phi29 genomic DNA translocation
3. A dimer as a building block in assembling RNA
4. Sequence requirement for hand-in-hand interaction in formation of pRNA dimers and hexamers to gear phi29 DNA translocation motor
5. Rotary DNA motors
6. Homomorphous hexameric helicases: Tales from the ring cycle
7. Probing the structure of RNAs in solution
8. RNA-RNA interaction is required for the formation of specific bicoid mRNA 3' UTR-STAUFEN ribonucleoprotein particles
9. Boundary of pRNA functional domains and minimum pRNA sequence requirement for specific connector binding and DNA packaging of phage phi29
10. Mapping the inter-RNA interaction of phage phi29 by site-specific photoaffinity crosslinking
11. Riding the (mono)rails: The structure of catenated DNA-tracking proteins
12. A physical model for the translocation and helicase activities of Escherichia coli transcription termination protein rho
13. Characterization of the small RNA of the bacteriophage φ29 DNA packaging machine
14. A small viral RNA is required for in vitro packaging of bacteriophage φ29 DNA
15. A defined system for in vitro packaging of DNA-gp3 of the Bacillus subtilis bacteriophage φ29
16. Biological and biochemical properties of the small viral RNA (pRNA) essential for the packaging of the double-stranded DNA of phage φ29
17. Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation
18. Cryo atomic force microscopy: A new approach for biological imaging at high resolution
19. Bacteriophage DNA packaging: RNA gears in a DNA transport machine
20. A transcriptional enhancer whose function imposes a requirement that proteins track along DNA
21. A highly sensitive system for the in vitro assembly of bacteriophage φ29 of Bacillus subtilis
22. In vitro assembly of infectious virions of ds-DNA phage φ29 from cloned gene products and synthetic nucleic acids
23. Rapid chemical probing of conformation in 16S ribosomal RNA and 30S ribosomal subunits using primer extension
24. Photoinduced cross-linking of RNA by cis-Rh(phen)2CI2+ and cis- Rh(phen)(phi)CI2+: A new family of light activatable nucleic acid cross-linking agents
25. Characterization of the prohead-pRNA interaction of bacteriophage φ29
26. Probing the structure of bacteriophage φ29 prohead RNA with specific mutations
27. Six molecules of SV40 large T antigen assemble in a propeller-shaped particle around a channel
28. Approaches to determine stoichiometry of viral assembly components
29. Complete inhibition of virion assembly in vivo with mutant pRNA essential for phage φ29 DNA packaging
30. DNA helicases: New breeds of translocating motors and molecular pumps
31. Mutant prohead RNAs in the in vitro packaging of bacteriophage φ29 DNA-gp3
32. Kinetic theory of ATP-driven translocases on one-dimensional polymer lattices
33. Kinetic parameters of the translocation of bacteriophage T4 gene 41 protein helicase on single-stranded DNA
34. The proximate 5' and 3' ends of the 120-base viral RNA (pRNA) are crucial for the packaging of bacteriophage φ29 DNA
35. Use of circular permutation to assess six bulges and four loops of DNA-packaging pRNA of bacteriophage φ29
36. Circularly permuted viral pRNA active and specific in the packaging of bacteriophage φ29 DNA
37. Function of hexameric RNA in packaging of bacteriophage phi29 DNA in vitro
38. Imaging biological structures with the cryo atomic force microscope