-
1
-
-
50049132233
-
Self-destructive cooperation mediated by phenotypic noise
-
Ackermann M, Stecher B, Freed NE et al. Self-destructive cooperation mediated by phenotypic noise. Nature 2008;454:987–90.
-
(2008)
Nature
, vol.454
, pp. 987-990
-
-
Ackermann, M1
Stecher, B2
Freed, NE3
-
2
-
-
84958025724
-
New insights into the classification and integration specificity of Streptococcus Integrative Conjugative Elements through extensive genome exploration
-
Ambroset C, Coluzzi C, Guedon G et al. New insights into the classification and integration specificity of Streptococcus Integrative Conjugative Elements through extensive genome exploration. Front Microbiol 2015;6:1483.
-
(2015)
Front Microbiol
, vol.6
, pp. 1483
-
-
Ambroset, C1
Coluzzi, C2
Guedon, G3
-
3
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
-
Arkin A, Ross J, McAdams HH. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics 1998;149:1633–48.
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A1
Ross, J2
McAdams, HH.3
-
4
-
-
84978792140
-
Biology of ICEBs1, an integrative and conjugative element in Bacillus subtilis
-
Auchtung JM, Aleksanyan N, Bulku A et al. Biology of ICEBs1, an integrative and conjugative element in Bacillus subtilis. Plasmid 2016;86:14–25.
-
(2016)
Plasmid
, vol.86
, pp. 14-25
-
-
Auchtung, JM1
Aleksanyan, N2
Bulku, A3
-
5
-
-
34249997536
-
Identification and characterization of the immunity repressor (ImmR) that controls the mobile genetic element ICEBs1 of Bacillus subtilis
-
Auchtung JM, Lee CA, Garrison KL et al. Identification and characterization of the immunity repressor (ImmR) that controls the mobile genetic element ICEBs1 of Bacillus subtilis. Mol Microbiol 2007;64:1515–28.
-
(2007)
Mol Microbiol
, vol.64
, pp. 1515-1528
-
-
Auchtung, JM1
Lee, CA2
Garrison, KL3
-
6
-
-
24644481914
-
Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response
-
Auchtung JM, Lee CA, Monson RE et al. Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response. P Natl Acad Sci USA 2005;102:12554–9.
-
(2005)
P Natl Acad Sci USA
, vol.102
, pp. 12554-12559
-
-
Auchtung, JM1
Lee, CA2
Monson, RE3
-
7
-
-
79956108843
-
Efficient gene transfer in bacterial cell chains
-
Babic A, Berkmen MB, Lee CA et al. Efficient gene transfer in bacterial cell chains. MBio 2011;2:e00027–11.
-
(2011)
MBio
, vol.2
, pp. e00027-11
-
-
Babic, A1
Berkmen, MB2
Lee, CA3
-
8
-
-
78149442895
-
Conjugative DNA transfer induces the bacterial SOS response and promotes antibiotic resistance development through integron activation
-
Baharoglu Z, Bikard D, Mazel D. Conjugative DNA transfer induces the bacterial SOS response and promotes antibiotic resistance development through integron activation. PLoS Genet 2010;6:e1001165.
-
(2010)
PLoS Genet
, vol.6
, pp. e1001165
-
-
Baharoglu, Z1
Bikard, D2
Mazel, D.3
-
9
-
-
79952638264
-
Cellular decision making and biological noise: from microbes to mammals
-
Balazsi G, van Oudenaarden A, Collins JJ. Cellular decision making and biological noise: from microbes to mammals. Cell 2011;144:910–25.
-
(2011)
Cell
, vol.144
, pp. 910-925
-
-
Balazsi, G1
van Oudenaarden, A2
Collins, JJ.3
-
10
-
-
84880712059
-
Exploring the costs of horizontal gene transfer
-
Baltrus DA. Exploring the costs of horizontal gene transfer. Trends Ecol Evol 2013;28:489–95.
-
(2013)
Trends Ecol Evol
, vol.28
, pp. 489-495
-
-
Baltrus, DA.1
-
11
-
-
84888001845
-
Genome dynamics during experimental evolution
-
Barrick JE, Lenski RE. Genome dynamics during experimental evolution. Nat Rev Genet 2013;14:827–39.
-
(2013)
Nat Rev Genet
, vol.14
, pp. 827-839
-
-
Barrick, JE1
Lenski, RE.2
-
12
-
-
70350641005
-
Genome evolution and adaptation in a long-term experiment with Escherichia coli
-
Barrick JE, Yu DS, Yoon SH et al. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 2009;461:1243–7.
-
(2009)
Nature
, vol.461
, pp. 1243-1247
-
-
Barrick, JE1
Yu, DS2
Yoon, SH3
-
13
-
-
80255127317
-
Investigation of the prevalence of tetQ, tetX and tetX1 genes in Bacteroides strains with elevated tigecycline minimum inhibitory concentrations
-
Bartha NA, Soki J, Urban E et al. Investigation of the prevalence of tetQ, tetX and tetX1 genes in Bacteroides strains with elevated tigecycline minimum inhibitory concentrations. Int J Antimicrob Ag 2011;38:522–5.
-
(2011)
Int J Antimicrob Ag
, vol.38
, pp. 522-525
-
-
Bartha, NA1
Soki, J2
Urban, E3
-
14
-
-
0036966973
-
Comparison of SXT and R391, two conjugative integrating elements: definition of a genetic backbone for the mobilization of resistance determinants
-
Beaber JW, Burrus V, Hochhut B et al. Comparison of SXT and R391, two conjugative integrating elements: definition of a genetic backbone for the mobilization of resistance determinants. Cell Mol Life Sci 2002;59:2065–70.
-
(2002)
Cell Mol Life Sci
, vol.59
, pp. 2065-2070
-
-
Beaber, JW1
Burrus, V2
Hochhut, B3
-
15
-
-
0036062306
-
Genomic and functional analyses of SXT, an integrating antibiotic resistance gene transfer element derived from Vibrio cholerae
-
Beaber JW, Hochhut B, Waldor MK. Genomic and functional analyses of SXT, an integrating antibiotic resistance gene transfer element derived from Vibrio cholerae. J Bacteriol 2002;184:4259–69.
-
(2002)
J Bacteriol
, vol.184
, pp. 4259-4269
-
-
Beaber, JW1
Hochhut, B2
Waldor, MK.3
-
16
-
-
0345827436
-
SOS response promotes horizontal dissemination of antibiotic resistance genes
-
Beaber JW, Hochhut B, Waldor MK. SOS response promotes horizontal dissemination of antibiotic resistance genes. Nature 2004;427:72–4.
-
(2004)
Nature
, vol.427
, pp. 72-74
-
-
Beaber, JW1
Hochhut, B2
Waldor, MK.3
-
17
-
-
4344710142
-
Identification of operators and promoters that control SXT conjugative transfer
-
Beaber JW, Waldor MK. Identification of operators and promoters that control SXT conjugative transfer. J Bacteriol 2004;186:5945–9.
-
(2004)
J Bacteriol
, vol.186
, pp. 5945-5949
-
-
Beaber, JW1
Waldor, MK.2
-
18
-
-
84903512155
-
Revisiting bistability in the lysis/lysogeny circuit of bacteriophage lambda
-
Bednarz M, Halliday JA, Herman C et al. Revisiting bistability in the lysis/lysogeny circuit of bacteriophage lambda. PLoS One 2014;9:e100876.
-
(2014)
PLoS One
, vol.9
, pp. e100876
-
-
Bednarz, M1
Halliday, JA2
Herman, C3
-
19
-
-
33846915297
-
Derepression of excision of integrative and potentially conjugative elements from Streptococcus thermophilus by DNA damage response: implication of a cI-related repressor
-
Bellanger X, Morel C, Decaris B et al. Derepression of excision of integrative and potentially conjugative elements from Streptococcus thermophilus by DNA damage response: implication of a cI-related repressor. J Bacteriol 2007;189:1478–81.
-
(2007)
J Bacteriol
, vol.189
, pp. 1478-1481
-
-
Bellanger, X1
Morel, C2
Decaris, B3
-
20
-
-
35649016168
-
Regulation of excision of integrative and potentially conjugative elements from Streptococcus thermophilus: role of the arp1 repressor
-
Bellanger X, Morel C, Decaris B et al. Regulation of excision of integrative and potentially conjugative elements from Streptococcus thermophilus: role of the arp1 repressor. J Mol Microb Biotech 2008;14:16–21.
-
(2008)
J Mol Microb Biotech
, vol.14
, pp. 16-21
-
-
Bellanger, X1
Morel, C2
Decaris, B3
-
21
-
-
84904066349
-
Conjugative and mobilizable genomic islands in bacteria: evolution and diversity
-
Bellanger X, Payot S, Leblond-Bourget N et al. Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev 2014;38:720–60.
-
(2014)
FEMS Microbiol Rev
, vol.38
, pp. 720-760
-
-
Bellanger, X1
Payot, S2
Leblond-Bourget, N3
-
22
-
-
80051558417
-
Site-specific accretion of an integrative conjugative element together with a related genomic island leads to cis mobilization and gene capture
-
Bellanger X, Morel C, Gonot F et al. Site-specific accretion of an integrative conjugative element together with a related genomic island leads to cis mobilization and gene capture. Mol Microbiol 2011;81:912–25.
-
(2011)
Mol Microbiol
, vol.81
, pp. 912-925
-
-
Bellanger, X1
Morel, C2
Gonot, F3
-
23
-
-
65249174427
-
Conjugative transfer of the integrative conjugative elements ICESt1 and ICESt3 from Streptococcus thermophilus
-
Bellanger X, Roberts AP, Morel C et al. Conjugative transfer of the integrative conjugative elements ICESt1 and ICESt3 from Streptococcus thermophilus. J Bacteriol 2009;191: 2764–75.
-
(2009)
J Bacteriol
, vol.191
, pp. 2764-2775
-
-
Bellanger, X1
Roberts, AP2
Morel, C3
-
24
-
-
84959441148
-
Population structure and acquisition of the vanB resistance determinant in German clinical isolates of Enterococcus faecium ST192
-
Bender JK, Kalmbach A, Fleige C et al. Population structure and acquisition of the vanB resistance determinant in German clinical isolates of Enterococcus faecium ST192. Sci Rep 2016;6:21847.
-
(2016)
Sci Rep
, vol.6
, pp. 21847
-
-
Bender, JK1
Kalmbach, A2
Fleige, C3
-
25
-
-
73849096537
-
Polar positioning of a conjugation protein from the integrative and conjugative element ICEBs1 of Bacillus subtilis
-
Berkmen MB, Lee CA, Loveday EK et al. Polar positioning of a conjugation protein from the integrative and conjugative element ICEBs1 of Bacillus subtilis. J Bacteriol 2010;192:38–45.
-
(2010)
J Bacteriol
, vol.192
, pp. 38-45
-
-
Berkmen, MB1
Lee, CA2
Loveday, EK3
-
26
-
-
84862100340
-
ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria
-
Bi D, Xu Z, Harrison EM et al. ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res 2012;40:D621–6.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D621-D626
-
-
Bi, D1
Xu, Z2
Harrison, EM3
-
27
-
-
84957951124
-
Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection
-
Bianconi I, Jeukens J, Freschi L et al. Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection. BMC Genomics 2015;16:1105.
-
(2015)
BMC Genomics
, vol.16
, pp. 1105
-
-
Bianconi, I1
Jeukens, J2
Freschi, L3
-
28
-
-
84906302990
-
Pervasive domestication of defective prophages by bacteria
-
Bobay LM, Touchon M, Rocha EP. Pervasive domestication of defective prophages by bacteria. P Natl Acad Sci USA 2014;111:12127–32.
-
(2014)
P Natl Acad Sci USA
, vol.111
, pp. 12127-12132
-
-
Bobay, LM1
Touchon, M2
Rocha, EP.3
-
29
-
-
0035129352
-
Transfer region of a Bacteroides conjugative transposon, CTnDOT
-
Bonheyo G, Graham D, Shoemaker NB et al. Transfer region of a Bacteroides conjugative transposon, CTnDOT. Plasmid 2001a;45:41–51.
-
(2001)
Plasmid
, vol.45
, pp. 41-51
-
-
Bonheyo, G1
Graham, D2
Shoemaker, NB3
-
30
-
-
0035660616
-
Transfer region of a Bacteroides conjugative transposon contains regulatory as well as structural genes
-
Bonheyo GT, Hund BD, Shoemaker NB et al. Transfer region of a Bacteroides conjugative transposon contains regulatory as well as structural genes. Plasmid 2001b;46: 202–9.
-
(2001)
Plasmid
, vol.46
, pp. 202-209
-
-
Bonheyo, GT1
Hund, BD2
Shoemaker, NB3
-
31
-
-
77649166010
-
Beyond antibiotic resistance: integrating conjugative elements of the SXT/R391 family that encode novel diguanylate cyclases participate to c-di-GMP signalling in Vibrio cholerae
-
Bordeleau E, Brouillette E, Robichaud N et al. Beyond antibiotic resistance: integrating conjugative elements of the SXT/R391 family that encode novel diguanylate cyclases participate to c-di-GMP signalling in Vibrio cholerae. Environ Microbiol 2010;12:510–23.
-
(2010)
Environ Microbiol
, vol.12
, pp. 510-523
-
-
Bordeleau, E1
Brouillette, E2
Robichaud, N3
-
32
-
-
53849090635
-
A conserved anti-repressor controls horizontal gene transfer by proteolysis
-
Bose B, Auchtung JM, Lee CA et al. A conserved anti-repressor controls horizontal gene transfer by proteolysis. Mol Microbiol 2008;70:570–82.
-
(2008)
Mol Microbiol
, vol.70
, pp. 570-582
-
-
Bose, B1
Auchtung, JM2
Lee, CA3
-
33
-
-
78650147137
-
Regulation of horizontal gene transfer in Bacillus subtilis by activation of a conserved site-specific protease
-
Bose B, Grossman AD. Regulation of horizontal gene transfer in Bacillus subtilis by activation of a conserved site-specific protease. J Bacteriol 2011;193:22–9.
-
(2011)
J Bacteriol
, vol.193
, pp. 22-29
-
-
Bose, B1
Grossman, AD.2
-
34
-
-
48449098309
-
Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus
-
Boyd EF, Cohen AL, Naughton LM et al. Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus. BMC Microbiol 2008;8:110.
-
(2008)
BMC Microbiol
, vol.8
, pp. 110
-
-
Boyd, EF1
Cohen, AL2
Naughton, LM3
-
35
-
-
0026691447
-
Conjugative transposition of Tn916: the transposon int gene is required only in the donor
-
Bringel F, Van Alstine GL, Scott JR. Conjugative transposition of Tn916: the transposon int gene is required only in the donor. J Bacteriol 1992;174:4036–41.
-
(1992)
J Bacteriol
, vol.174
, pp. 4036-4041
-
-
Bringel, F1
Van Alstine, GL2
Scott, JR.3
-
36
-
-
53849086545
-
Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae
-
Brochet M, Couve E, Glaser P et al. Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol 2008;190:6913–7.
-
(2008)
J Bacteriol
, vol.190
, pp. 6913-6917
-
-
Brochet, M1
Couve, E2
Glaser, P3
-
37
-
-
60349094186
-
Atypical association of DDE transposition with conjugation specifies a new family of mobile elements
-
Brochet M, Da Cunha V, Couve E et al. Atypical association of DDE transposition with conjugation specifies a new family of mobile elements. Mol Microbiol 2009;71:948–59.
-
(2009)
Mol Microbiol
, vol.71
, pp. 948-959
-
-
Brochet, M1
Da Cunha, V2
Couve, E3
-
38
-
-
0031977363
-
The 102-kilobase unstable region of Yersinia pestis comprises a high- pathogenicity island linked to a pigmentation segment which undergoes internal rearrangement
-
Buchrieser C, Prentice M, Carniel E. The 102-kilobase unstable region of Yersinia pestis comprises a high- pathogenicity island linked to a pigmentation segment which undergoes internal rearrangement. J Bacteriol 1998;180:2321–9.
-
(1998)
J Bacteriol
, vol.180
, pp. 2321-2329
-
-
Buchrieser, C1
Prentice, M2
Carniel, E.3
-
39
-
-
33646060681
-
The current ICE age: Biology and evolution of SXT-related integrating conjugative elements
-
Burrus V, Marrero J, Waldor MK. The current ICE age: Biology and evolution of SXT-related integrating conjugative elements. Plasmid 2006;55:173–83.
-
(2006)
Plasmid
, vol.55
, pp. 173-183
-
-
Burrus, V1
Marrero, J2
Waldor, MK.3
-
40
-
-
0036439064
-
Conjugative transposons: the tip of the iceberg
-
Burrus V, Pavlovic G, Decaris B et al. Conjugative transposons: the tip of the iceberg. Mol Microbiol 2002a;46:601–10.
-
(2002)
Mol Microbiol
, vol.46
, pp. 601-610
-
-
Burrus, V1
Pavlovic, G2
Decaris, B3
-
41
-
-
0036425161
-
The ICESt1 element of Streptococcus thermophilus belongs to a large family of integrative and conjugative elements that exchange modules and change their specificity of integration
-
Burrus V, Pavlovic G, Decaris B et al. The ICESt1 element of Streptococcus thermophilus belongs to a large family of integrative and conjugative elements that exchange modules and change their specificity of integration. Plasmid 2002b;48:77–97.
-
(2002)
Plasmid
, vol.48
, pp. 77-97
-
-
Burrus, V1
Pavlovic, G2
Decaris, B3
-
42
-
-
0034071032
-
Characterization of a novel integrative element, ICESt1, in the lactic acid bacterium Streptococcus thermophilus
-
Burrus V, Roussel Y, Decaris B et al. Characterization of a novel integrative element, ICESt1, in the lactic acid bacterium Streptococcus thermophilus. Appl Environ Microb 2000;66:1749–53.
-
(2000)
Appl Environ Microb
, vol.66
, pp. 1749-1753
-
-
Burrus, V1
Roussel, Y2
Decaris, B3
-
43
-
-
0041387546
-
Control of SXT integration and excision
-
Burrus V, Waldor MK. Control of SXT integration and excision. J Bacteriol 2003;185:5045–54.
-
(2003)
J Bacteriol
, vol.185
, pp. 5045-5054
-
-
Burrus, V1
Waldor, MK.2
-
44
-
-
1942475905
-
Formation of SXT tandem arrays and SXTR391 hybrids
-
Burrus V, Waldor MK. Formation of SXT tandem arrays and SXTR391 hybrids. J Bacteriol 2004a;186:2636–45.
-
(2004)
J Bacteriol
, vol.186
, pp. 2636-2645
-
-
Burrus, V1
Waldor, MK.2
-
45
-
-
2942689400
-
Shaping bacterial genomes with integrative and conjugative elements
-
Burrus V, Waldor MK. Shaping bacterial genomes with integrative and conjugative elements. Res Microbiol 2004b;155:376–86.
-
(2004)
Res Microbiol
, vol.155
, pp. 376-386
-
-
Burrus, V1
Waldor, MK.2
-
48
-
-
0024827010
-
Excision and insertion of the conjugative transposon Tn916 involves a novel recombination mechanism
-
Caparon MG, Scott JR. Excision and insertion of the conjugative transposon Tn916 involves a novel recombination mechanism. Cell 1989;59:1027–34.
-
(1989)
Cell
, vol.59
, pp. 1027-1034
-
-
Caparon, MG1
Scott, JR.2
-
49
-
-
84925053103
-
Inter-phylum HGT has shaped the metabolism of many mesophilic and anaerobic bacteria
-
Caro-Quintero A, Konstantinidis KT. Inter-phylum HGT has shaped the metabolism of many mesophilic and anaerobic bacteria. ISME J 2015;9:958–67.
-
(2015)
ISME J
, vol.9
, pp. 958-967
-
-
Caro-Quintero, A1
Konstantinidis, KT.2
-
50
-
-
84937803810
-
Biology of three ICE families: SXT/R391, ICEBs1, and ICESt1/ICESt3
-
0008-2014
-
Carraro N, Burrus V. Biology of three ICE families: SXT/R391, ICEBs1, and ICESt1/ICESt3. Microbiol Spectr 2014;2: MDNA3-0008-2014.
-
(2014)
Microbiol Spectr
, vol.2
, pp. MDNA3
-
-
Carraro, N1
Burrus, V.2
-
51
-
-
84963881799
-
The dualistic nature of integrative and conjugative elements
-
Carraro N, Burrus V. The dualistic nature of integrative and conjugative elements. Mob Genet Element 2015;5:98–102.
-
(2015)
Mob Genet Element
, vol.5
, pp. 98-102
-
-
Carraro, N1
Burrus, V.2
-
52
-
-
80054804748
-
Differential regulation of two closely related integrative and conjugative elements from Streptococcus thermophilus
-
Carraro N, Libante V, Morel C et al. Differential regulation of two closely related integrative and conjugative elements from Streptococcus thermophilus. BMC Microbiol 2011;11:238.
-
(2011)
BMC Microbiol
, vol.11
, pp. 238
-
-
Carraro, N1
Libante, V2
Morel, C3
-
53
-
-
84963812713
-
Plasmid-like replication of a minimal Streptococcal Integrative and Conjugative Element
-
Jan 29. [Epub ahead of print]
-
Carraro N, Libante V, Morel C et al. Plasmid-like replication of a minimal Streptococcal Integrative and Conjugative Element. Microbiology 2016a; Jan 29. doi: 10.1099/mic.0.000219. [Epub ahead of print].
-
(2016)
Microbiology
-
-
Carraro, N1
Libante, V2
Morel, C3
-
54
-
-
84937774473
-
Replication and active partition of Integrative and Conjugative Elements (ICEs) of the SXT/R391 family: the line between ICEs and conjugative plasmids is getting thinner
-
Carraro N, Poulin D, Burrus V. Replication and active partition of Integrative and Conjugative Elements (ICEs) of the SXT/R391 family: the line between ICEs and conjugative plasmids is getting thinner. PLoS Genet 2015;11:e1005298.
-
(2015)
PLoS Genet
, vol.11
, pp. e1005298
-
-
Carraro, N1
Poulin, D2
Burrus, V.3
-
55
-
-
84986586545
-
IncA/C conjugative plasmids mobilize a new family of multidrug resistance islands in clinical Vibrio cholerae non-O1/non-O139 isolates from Haiti
-
pii: e00509-16
-
Carraro N, Rivard N, Ceccarelli D et al. IncA/C conjugative plasmids mobilize a new family of multidrug resistance islands in clinical Vibrio cholerae non-O1/non-O139 isolates from Haiti. MBio 2016b;7: pii: e00509-16.
-
(2016)
MBio
, vol.7
-
-
Carraro, N1
Rivard, N2
Ceccarelli, D3
-
56
-
-
48149104240
-
Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements
-
Ceccarelli D, Daccord A, Rene M et al. Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements. J Bacteriol 2008;190:5328–38.
-
(2008)
J Bacteriol
, vol.190
, pp. 5328-5338
-
-
Ceccarelli, D1
Daccord, A2
Rene, M3
-
57
-
-
0030957098
-
Use of an excision reporter plasmid to study the intracellular mobility of the conjugative transposon Tn916 in gram-positive bacteria
-
(Pt 4)
-
Celli J, Poyart C, Trieu-Cuot P. Use of an excision reporter plasmid to study the intracellular mobility of the conjugative transposon Tn916 in gram-positive bacteria. Microbiology 1997;143 (Pt 4):1253–61.
-
(1997)
Microbiology
, vol.143
, pp. 1253-1261
-
-
Celli, J1
Poyart, C2
Trieu-Cuot, P.3
-
58
-
-
0031921950
-
Circularization of Tn916 is required for expression of the transposon-encoded transfer functions: characterization of long tetracycline-inducible transcripts reading through the attachment site
-
Celli J, Trieu-Cuot P. Circularization of Tn916 is required for expression of the transposon-encoded transfer functions: characterization of long tetracycline-inducible transcripts reading through the attachment site. Mol Microbiol 1998;28:103–17.
-
(1998)
Mol Microbiol
, vol.28
, pp. 103-117
-
-
Celli, J1
Trieu-Cuot, P.2
-
59
-
-
84927516630
-
Composite mobile genetic elements disseminating macrolide resistance in Streptococcus pneumoniae
-
Chancey ST, Agrawal S, Schroeder MR et al. Composite mobile genetic elements disseminating macrolide resistance in Streptococcus pneumoniae. Front Microbiol 2015;6:26.
-
(2015)
Front Microbiol
, vol.6
, pp. 26
-
-
Chancey, ST1
Agrawal, S2
Schroeder, MR3
-
60
-
-
28544449319
-
The ins and outs of DNA transfer in bacteria
-
Chen I, Christie PJ, Dubnau D. The ins and outs of DNA transfer in bacteria. Science 2005;310:1456–60.
-
(2005)
Science
, vol.310
, pp. 1456-1460
-
-
Chen, I1
Christie, PJ2
Dubnau, D.3
-
61
-
-
0033943003
-
Integration and excision of a Bacteroides conjugative transposon, CTnDOT
-
Cheng Q, Paszkiet BJ, Shoemaker NB et al. Integration and excision of a Bacteroides conjugative transposon, CTnDOT. J Bacteriol 2000;182:4035–43.
-
(2000)
J Bacteriol
, vol.182
, pp. 4035-4043
-
-
Cheng, Q1
Paszkiet, BJ2
Shoemaker, NB3
-
62
-
-
0034892598
-
Identification of genes required for excision of CTnDOT, a Bacteroides conjugative transposon
-
Cheng Q, Sutanto Y, Shoemaker NB et al. Identification of genes required for excision of CTnDOT, a Bacteroides conjugative transposon. Mol Microbiol 2001;41:625–32.
-
(2001)
Mol Microbiol
, vol.41
, pp. 625-632
-
-
Cheng, Q1
Sutanto, Y2
Shoemaker, NB3
-
63
-
-
0036719290
-
Development of an in vitro integration assay for the Bacteroides conjugative transposon CTnDOT
-
Cheng Q, Wesslund N, Shoemaker NB et al. Development of an in vitro integration assay for the Bacteroides conjugative transposon CTnDOT. J Bacteriol 2002;184:4829–37.
-
(2002)
J Bacteriol
, vol.184
, pp. 4829-4837
-
-
Cheng, Q1
Wesslund, N2
Shoemaker, NB3
-
64
-
-
84996553626
-
The mosaic type IV secretion systems
-
Christie PJ. The mosaic type IV secretion systems. EcoSal Plus 2016;7: doi: 10.1128/ecosalplus.ESP-0020-2015.
-
(2016)
EcoSal Plus
, vol.7
-
-
Christie, PJ.1
-
65
-
-
0036202271
-
Xis protein binding to the left arm stimulates excision of conjugative transposon Tn916
-
Connolly KM, Iwahara M, Clubb RT. Xis protein binding to the left arm stimulates excision of conjugative transposon Tn916. J Bacteriol 2002;184:2088–99.
-
(2002)
J Bacteriol
, vol.184
, pp. 2088-2099
-
-
Connolly, KM1
Iwahara, M2
Clubb, RT.3
-
66
-
-
84962155985
-
Horizontal DNA transfer mechanisms of bacteria as weapons of intragenomic conflict
-
Croucher NJ, Mostowy R, Wymant C et al. Horizontal DNA transfer mechanisms of bacteria as weapons of intragenomic conflict. PLoS Biol 2016;14:e1002394.
-
(2016)
PLoS Biol
, vol.14
, pp. e1002394
-
-
Croucher, NJ1
Mostowy, R2
Wymant, C3
-
67
-
-
77958603856
-
Integrating conjugative elements of the SXT/R391 family trigger the excision and drive the mobilization of a new class of Vibrio genomic islands
-
Daccord A, Ceccarelli D, Burrus V. Integrating conjugative elements of the SXT/R391 family trigger the excision and drive the mobilization of a new class of Vibrio genomic islands. Mol Microbiol 2010;78:576–88.
-
(2010)
Mol Microbiol
, vol.78
, pp. 576-588
-
-
Daccord, A1
Ceccarelli, D2
Burrus, V.3
-
68
-
-
84873046564
-
Comparative analysis of mobilizable genomic islands
-
Daccord A, Ceccarelli D, Rodrigue S et al. Comparative analysis of mobilizable genomic islands. J Bacteriol 2012a;195:606–14.
-
(2012)
J Bacteriol
, vol.195
, pp. 606-614
-
-
Daccord, A1
Ceccarelli, D2
Rodrigue, S3
-
69
-
-
84868645007
-
Dynamics of the SetCD-regulated integration and excision of genomic islands mobilized by integrating conjugative elements of the SXT/R391 family
-
Daccord A, Mursell M, Poulin-Laprade D et al. Dynamics of the SetCD-regulated integration and excision of genomic islands mobilized by integrating conjugative elements of the SXT/R391 family. J Bacteriol 2012b;194:5794–802.
-
(2012)
J Bacteriol
, vol.194
, pp. 5794-5802
-
-
Daccord, A1
Mursell, M2
Poulin-Laprade, D3
-
70
-
-
84939856353
-
A globally distributed mobile genetic element inhibits natural transformation of Vibrio cholerae
-
Dalia AB, Seed KD, Calderwood SB et al. A globally distributed mobile genetic element inhibits natural transformation of Vibrio cholerae. P Natl Acad Sci USA 2015;112: 10485–90.
-
(2015)
P Natl Acad Sci USA
, vol.112
, pp. 10485-10490
-
-
Dalia, AB1
Seed, KD2
Calderwood, SB3
-
71
-
-
84974733850
-
Highly variable individual donor cell fates characterize robust horizontal gene transfer of an integrative and conjugative element
-
Delavat F, Mitri S, Pelet S et al. Highly variable individual donor cell fates characterize robust horizontal gene transfer of an integrative and conjugative element. P Natl Acad Sci USA 2016;113:E3375–83.
-
(2016)
P Natl Acad Sci USA
, vol.113
, pp. E3375-E3383
-
-
Delavat, F1
Mitri, S2
Pelet, S3
-
72
-
-
84891362153
-
Evolutionary genomics of epidemic and nonepidemic strains of Pseudomonas aeruginosa
-
Dettman JR, Rodrigue N, Aaron SD et al. Evolutionary genomics of epidemic and nonepidemic strains of Pseudomonas aeruginosa. P Natl Acad Sci USA 2013;110:21065–70.
-
(2013)
P Natl Acad Sci USA
, vol.110
, pp. 21065-21070
-
-
Dettman, JR1
Rodrigue, N2
Aaron, SD3
-
73
-
-
85040817258
-
Uncovering novel mobile genetic elements and their dynamics through an extrachromosomal sequencing approach
-
Deutsch DR, Utter B, Fischetti VA. Uncovering novel mobile genetic elements and their dynamics through an extrachromosomal sequencing approach. Mob Genet Elements 2016;6:e1189987.
-
(2016)
Mob Genet Elements
, vol.6
, pp. e1189987
-
-
Deutsch, DR1
Utter, B2
Fischetti, VA.3
-
74
-
-
84896441314
-
The bifunctional cell wall hydrolase CwlT is needed for conjugation of the integrative and conjugative element ICEBs1 in Bacillus subtilis and B. anthracis
-
DeWitt T, Grossman AD. The bifunctional cell wall hydrolase CwlT is needed for conjugation of the integrative and conjugative element ICEBs1 in Bacillus subtilis and B. anthracis. J Bacteriol 2014;196:1588–96.
-
(2014)
J Bacteriol
, vol.196
, pp. 1588-1596
-
-
DeWitt, T1
Grossman, AD.2
-
75
-
-
84979856828
-
IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis
-
Dhillon BK, Laird MR, Shay JA et al. IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis. Nucleic Acids Res 2015;43:W104–8.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. W104-W108
-
-
Dhillon, BK1
Laird, MR2
Shay, JA3
-
76
-
-
34147157115
-
IntDOT interactions with core- and arm-type sites of the conjugative transposon CTnDOT
-
Dichiara JM, Mattis AN, Gardner JF. IntDOT interactions with core- and arm-type sites of the conjugative transposon CTnDOT. J Bacteriol 2007;189:2692–701.
-
(2007)
J Bacteriol
, vol.189
, pp. 2692-2701
-
-
Dichiara, JM1
Mattis, AN2
Gardner, JF.3
-
77
-
-
18444382333
-
In vitro analysis of sequence requirements for the excision reaction of the Bacteroides conjugative transposon, CTnDOT
-
DiChiara JM, Salyers AA, Gardner JF. In vitro analysis of sequence requirements for the excision reaction of the Bacteroides conjugative transposon, CTnDOT. Mol Microbiol 2005;56:1035–48.
-
(2005)
Mol Microbiol
, vol.56
, pp. 1035-1048
-
-
DiChiara, JM1
Salyers, AA2
Gardner, JF.3
-
78
-
-
65549108485
-
Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14
-
Ding F, Tang P, Hsu MH et al. Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14. BMC Genomics 2009;10:158.
-
(2009)
BMC Genomics
, vol.10
, pp. 158
-
-
Ding, F1
Tang, P2
Hsu, MH3
-
79
-
-
2442449227
-
Genomic islands in pathogenic and environmental microorganisms
-
Dobrindt U, Hochhut B, Hentschel U et al. Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol 2004;2:414–24.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 414-424
-
-
Dobrindt, U1
Hochhut, B2
Hentschel, U3
-
80
-
-
84884289276
-
ICEA of Mycoplasma agalactiae: a new family of self-transmissible integrative elements that confers conjugative properties to the recipient strain
-
Dordet Frisoni E, Marenda MS, Sagne E et al. ICEA of Mycoplasma agalactiae: a new family of self-transmissible integrative elements that confers conjugative properties to the recipient strain. Mol Microbiol 2013;89:1226–39.
-
(2013)
Mol Microbiol
, vol.89
, pp. 1226-1239
-
-
Dordet Frisoni, E1
Marenda, MS2
Sagne, E3
-
81
-
-
0016156623
-
Isolation and characterization of a 3-chlorobenzoate degrading Pseudomonad
-
Dorn E, Hellwig M, Reineke W et al. Isolation and characterization of a 3-chlorobenzoate degrading Pseudomonad. Arch Microbiol 1974;99:61–70.
-
(1974)
Arch Microbiol
, vol.99
, pp. 61-70
-
-
Dorn, E1
Hellwig, M2
Reineke, W3
-
82
-
-
15944382319
-
The Salmonella genomic island 1 is an integrative mobilizable element
-
Doublet B, Boyd D, Mulvey MR et al. The Salmonella genomic island 1 is an integrative mobilizable element. Mol Microbiol 2005;55:1911–24.
-
(2005)
Mol Microbiol
, vol.55
, pp. 1911-1924
-
-
Doublet, B1
Boyd, D2
Mulvey, MR3
-
83
-
-
33748058888
-
Bistability in bacteria
-
Dubnau D, Losick R. Bistability in bacteria. Mol Microbiol 2006;61:564–72.
-
(2006)
Mol Microbiol
, vol.61
, pp. 564-572
-
-
Dubnau, D1
Losick, R.2
-
84
-
-
84897845950
-
A widespread bacteriophage abortive infection system functions through a Type IV toxin-antitoxin mechanism
-
Dy RL, Przybilski R, Semeijn K et al. A widespread bacteriophage abortive infection system functions through a Type IV toxin-antitoxin mechanism. Nucleic Acids Res 2014;42:4590–605.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 4590-4605
-
-
Dy, RL1
Przybilski, R2
Semeijn, K3
-
85
-
-
33947373975
-
The SXT conjugative element and linear prophage N15 encode toxin-antitoxin-stabilizing systems homologous to the tad-ata module of the Paracoccus aminophilus plasmid pAMI2
-
Dziewit L, Jazurek M, Drewniak L et al. The SXT conjugative element and linear prophage N15 encode toxin-antitoxin-stabilizing systems homologous to the tad-ata module of the Paracoccus aminophilus plasmid pAMI2. J Bacteriol 2006;189:1983–97.
-
(2006)
J Bacteriol
, vol.189
, pp. 1983-1997
-
-
Dziewit, L1
Jazurek, M2
Drewniak, L3
-
86
-
-
77956520011
-
Functional roles for noise in genetic circuits
-
Eldar A, Elowitz MB. Functional roles for noise in genetic circuits. Nature 2010;467:167–73.
-
(2010)
Nature
, vol.467
, pp. 167-173
-
-
Eldar, A1
Elowitz, MB.2
-
87
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz MB, Levine AJ, Siggia ED et al. Stochastic gene expression in a single cell. Science 2002;297:1183–6.
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, MB1
Levine, AJ2
Siggia, ED3
-
88
-
-
84936805539
-
A novel family of integrases associated with prophages and genomic islands integrated within the tRNA-dihydrouridine synthase A (dusA) gene
-
Farrugia DN, Elbourne LD, Mabbutt BC et al. A novel family of integrases associated with prophages and genomic islands integrated within the tRNA-dihydrouridine synthase A (dusA) gene. Nucleic Acid Res 2015;43:4547–57.
-
(2015)
Nucleic Acid Res
, vol.43
, pp. 4547-4557
-
-
Farrugia, DN1
Elbourne, LD2
Mabbutt, BC3
-
89
-
-
0036532226
-
Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability
-
Ferrell JE, Jr. Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Curr Opin Cell Biol 2002;14:140–8.
-
(2002)
Curr Opin Cell Biol
, vol.14
, pp. 140-148
-
-
Ferrell, JE1
-
90
-
-
0019415205
-
Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of”conjugal” transfer in the absence of a conjugative plasmid
-
Franke AE, Clewell DB. Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of”conjugal” transfer in the absence of a conjugative plasmid. J Bacteriol 1981;145:494–502.
-
(1981)
J Bacteriol
, vol.145
, pp. 494-502
-
-
Franke, AE1
Clewell, DB.2
-
91
-
-
58149147307
-
A simple screen to identify promoters conferring high levels of phenotypic noise
-
Freed NE, Silander OK, Stecher B et al. A simple screen to identify promoters conferring high levels of phenotypic noise. PLoS Genet 2008;4:e1000307.
-
(2008)
PLoS Genet
, vol.4
, pp. e1000307
-
-
Freed, NE1
Silander, OK2
Stecher, B3
-
92
-
-
44349111947
-
Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1
-
Gaillard M, Pernet N, Vogne C et al. Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. P Natl Acad Sci USA 2008;105:7058–63.
-
(2008)
P Natl Acad Sci USA
, vol.105
, pp. 7058-7063
-
-
Gaillard, M1
Pernet, N2
Vogne, C3
-
93
-
-
77952600379
-
Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13
-
Gaillard M, Pradervand N, Minoia M et al. Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13. BMC Microbiol 2010;10:153.
-
(2010)
BMC Microbiol
, vol.10
, pp. 153
-
-
Gaillard, M1
Pradervand, N2
Minoia, M3
-
94
-
-
33644745555
-
The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties
-
Gaillard M, Vallaeys T, Vorhölter FJ et al. The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties. J Bacteriol 2006;188:1999–2013.
-
(2006)
J Bacteriol
, vol.188
, pp. 1999-2013
-
-
Gaillard, M1
Vallaeys, T2
Vorhölter, FJ3
-
95
-
-
84876192931
-
DNA-damaging agents induce the RecA-independent homologous recombination functions of integrating conjugative elements of the SXT/R391 family
-
Garriss G, Poulin-Laprade D, Burrus V. DNA-damaging agents induce the RecA-independent homologous recombination functions of integrating conjugative elements of the SXT/R391 family. J Bacteriol 2013;195:1991–2003.
-
(2013)
J Bacteriol
, vol.195
, pp. 1991-2003
-
-
Garriss, G1
Poulin-Laprade, D2
Burrus, V.3
-
96
-
-
74249119814
-
Mobile antibiotic resistance encoding elements promote their own diversity
-
Garriss G, Waldor MK, Burrus V. Mobile antibiotic resistance encoding elements promote their own diversity. PLoS Genet 2009;5:e1000775.
-
(2009)
PLoS Genet
, vol.5
, pp. e1000775
-
-
Garriss, G1
Waldor, MK2
Burrus, V.3
-
97
-
-
81155137330
-
Uncovering the prevalence and diversity of integrating conjugative elements in actinobacteria
-
Ghinet MG, Bordeleau E, Beaudin J et al. Uncovering the prevalence and diversity of integrating conjugative elements in actinobacteria. PLoS One 2011;6:e27846.
-
(2011)
PLoS One
, vol.6
, pp. e27846
-
-
Ghinet, MG1
Bordeleau, E2
Beaudin, J3
-
98
-
-
23944499633
-
Horizontal gene transfer, genome innovation and evolution
-
Gogarten JP, Townsend JP. Horizontal gene transfer, genome innovation and evolution. Nat Rev Microbiol 2005;3:679–82.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 679-682
-
-
Gogarten, JP1
Townsend, JP.2
-
99
-
-
84876194345
-
Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading
-
Guerillot R, Da Cunha V, Sauvage E et al. Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading. J Bacteriol 2013;195:1979–90.
-
(2013)
J Bacteriol
, vol.195
, pp. 1979-1990
-
-
Guerillot, R1
Da Cunha, V2
Sauvage, E3
-
100
-
-
84875875453
-
Evolution of conjugation and type IV secretion systems
-
Guglielmini J, de la Cruz F, Rocha EP. Evolution of conjugation and type IV secretion systems. Mol Biol Evol 2013;30:315–31.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 315-331
-
-
Guglielmini, J1
de la Cruz, F2
Rocha, EP.3
-
101
-
-
84901337307
-
Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion
-
Guglielmini J, Neron B, Abby SS et al. Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion. Nucleic Acids Res 2014;42:5715–27.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 5715-5727
-
-
Guglielmini, J1
Neron, B2
Abby, SS3
-
102
-
-
80052333445
-
The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation
-
Guglielmini J, Quintais L, Garcillan-Barcia MP et al. The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation. PLoS Genet 2011;7:e1002222, doi:10.1371/journal.pgen.
-
(2011)
PLoS Genet
, vol.7
, pp. e1002222
-
-
Guglielmini, J1
Quintais, L2
Garcillan-Barcia, MP3
-
103
-
-
0030901705
-
Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution
-
Hacker J, Blum-Oehler G, Muhldorfer I et al. Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution. Mol Microbiol 1997;23:1089–97.
-
(1997)
Mol Microbiol
, vol.23
, pp. 1089-1097
-
-
Hacker, J1
Blum-Oehler, G2
Muhldorfer, I3
-
104
-
-
0034980876
-
Ecological fitness, genomic islands and bacterial pathogenicity: a Darwinian view of the evolution of microbes
-
Hacker J, Carniel E. Ecological fitness, genomic islands and bacterial pathogenicity: a Darwinian view of the evolution of microbes. EMBO Rep 2001;2:376–81.
-
(2001)
EMBO Rep
, vol.2
, pp. 376-381
-
-
Hacker, J1
Carniel, E.2
-
105
-
-
0001972152
-
The concept of pathogenicity islands
-
Kaper JB Hacker J (eds) Washington, DC: American Society for Microbiology
-
Hacker J, Kaper JB. The concept of pathogenicity islands. In: Kaper JB Hacker J (eds) Pathogenicitiy Islands and Other Mobile Virulence Elements. Washington, DC: American Society for Microbiology, 1999, 1–12.
-
(1999)
Pathogenicitiy Islands and Other Mobile Virulence Elements
, pp. 1-12
-
-
Hacker, J1
Kaper, JB.2
-
106
-
-
84992361830
-
Assembly and transfer of tripartite integrative and conjugative genetic elements
-
Haskett TL, Terpolilli JJ, Bekuma A et al. Assembly and transfer of tripartite integrative and conjugative genetic elements. P Natl Acad Sci USA 2016;113:12268–73.
-
(2016)
P Natl Acad Sci USA
, vol.113
, pp. 12268-12273
-
-
Haskett, TL1
Terpolilli, JJ2
Bekuma, A3
-
107
-
-
0035048793
-
Specific binding of integrase to the origin of transfer (oriT) of the conjugative transposon Tn916
-
Hinerfeld D, Churchward G. Specific binding of integrase to the origin of transfer (oriT) of the conjugative transposon Tn916. J Bacteriol 2001a;183:2947–51.
-
(2001)
J Bacteriol
, vol.183
, pp. 2947-2951
-
-
Hinerfeld, D1
Churchward, G.2
-
108
-
-
0034786513
-
Xis protein of the conjugative transposon Tn916 plays dual opposing roles in transposon excision
-
Hinerfeld D, Churchward G. Xis protein of the conjugative transposon Tn916 plays dual opposing roles in transposon excision. Mol Microbiol 2001b;41:1459–67.
-
(2001)
Mol Microbiol
, vol.41
, pp. 1459-1467
-
-
Hinerfeld, D1
Churchward, G.2
-
109
-
-
0035140037
-
Formation of chromosomal tandem arrays of the SXT element and R391, two conjugative chromosomally integrating elements that share an attachment site
-
Hochhut B, Beaber JW, Woodgate R et al. Formation of chromosomal tandem arrays of the SXT element and R391, two conjugative chromosomally integrating elements that share an attachment site. J Bacteriol 2001;183:1124–32.
-
(2001)
J Bacteriol
, vol.183
, pp. 1124-1132
-
-
Hochhut, B1
Beaber, JW2
Woodgate, R3
-
110
-
-
0034022888
-
Mobilization of plasmids and chromosomal DNA mediated by the SXT element, a constin found in Vibrio cholerae O139
-
Hochhut B, Marrero J, Waldor MK. Mobilization of plasmids and chromosomal DNA mediated by the SXT element, a constin found in Vibrio cholerae O139. J Bacteriol 2000;182:2043–7.
-
(2000)
J Bacteriol
, vol.182
, pp. 2043-2047
-
-
Hochhut, B1
Marrero, J2
Waldor, MK.3
-
111
-
-
0032910190
-
Site-specific integration of the conjugal Vibrio cholerae SXT element into prfC
-
Hochhut B, Waldor MK. Site-specific integration of the conjugal Vibrio cholerae SXT element into prfC. Mol Microbiol 1999;32:99–110.
-
(1999)
Mol Microbiol
, vol.32
, pp. 99-110
-
-
Hochhut, B1
Waldor, MK.2
-
112
-
-
84938630725
-
The Xis2d protein of CTnDOT binds to the intergenic region between the mob and tra operons
-
Hopp CM, Gardner JF, Salyers AA. The Xis2d protein of CTnDOT binds to the intergenic region between the mob and tra operons. Plasmid 2015;81:63–71.
-
(2015)
Plasmid
, vol.81
, pp. 63-71
-
-
Hopp, CM1
Gardner, JF2
Salyers, AA.3
-
113
-
-
84926217448
-
Classification of prokaryotic genetic replicators: between selfishness and altruism
-
Jalasvuori M, Koonin EV. Classification of prokaryotic genetic replicators: between selfishness and altruism. Ann N Y Acad Sci 2015;1341:96–105.
-
(2015)
Ann N Y Acad Sci
, vol.1341
, pp. 96-105
-
-
Jalasvuori, M1
Koonin, EV.2
-
114
-
-
84945552320
-
Chasing the origin of viruses: Capsid-forming genes as a life-saving preadaptation within a community of early replicators
-
Jalasvuori M, Mattila S, Hoikkala V. Chasing the origin of viruses: Capsid-forming genes as a life-saving preadaptation within a community of early replicators. PLoS One 2015;10:e0126094.
-
(2015)
PLoS One
, vol.10
, pp. e0126094
-
-
Jalasvuori, M1
Mattila, S2
Hoikkala, V.3
-
115
-
-
0028361886
-
Evidence that coupling sequences play a frequency-determining role in conjugative transposition of Tn916 in Enterococcus faecalis
-
Jaworski DD, Clewell DB. Evidence that coupling sequences play a frequency-determining role in conjugative transposition of Tn916 in Enterococcus faecalis. J Bacteriol 1994;176:3328–35.
-
(1994)
J Bacteriol
, vol.176
, pp. 3328-3335
-
-
Jaworski, DD1
Clewell, DB.2
-
116
-
-
0028839175
-
A functional origin of transfer (oriT) on the conjugative transposon Tn916
-
Jaworski DD, Clewell DB. A functional origin of transfer (oriT) on the conjugative transposon Tn916. J Bacteriol 1995;177:6644–51.
-
(1995)
J Bacteriol
, vol.177
, pp. 6644-6651
-
-
Jaworski, DD1
Clewell, DB.2
-
117
-
-
70350434183
-
Tetracycline-associated transcriptional regulation of transfer genes of the Bacteroides conjugative transposon CTnDOT
-
Jeters RT, Wang GR, Moon K et al. Tetracycline-associated transcriptional regulation of transfer genes of the Bacteroides conjugative transposon CTnDOT. J Bacteriol 2009;191:6374–82.
-
(2009)
J Bacteriol
, vol.191
, pp. 6374-6382
-
-
Jeters, RT1
Wang, GR2
Moon, K3
-
118
-
-
0032845947
-
Interactions of the integrase protein of the conjugative transposon Tn916 with its specific DNA binding sites
-
Jia Y, Churchward G. Interactions of the integrase protein of the conjugative transposon Tn916 with its specific DNA binding sites. J Bacteriol 1999;181:6114–23.
-
(1999)
J Bacteriol
, vol.181
, pp. 6114-6123
-
-
Jia, Y1
Churchward, G.2
-
119
-
-
84908508863
-
Identification of host genes that affect acquisition of an integrative and conjugative element in Bacillus subtilis
-
Johnson CM, Grossman AD. Identification of host genes that affect acquisition of an integrative and conjugative element in Bacillus subtilis. Mol Microbiol 2014;93:1284–301.
-
(2014)
Mol Microbiol
, vol.93
, pp. 1284-1301
-
-
Johnson, CM1
Grossman, AD.2
-
120
-
-
84948767494
-
Integrative and Conjugative Elements (ICEs): What they do and how they work
-
Johnson CM, Grossman AD. Integrative and Conjugative Elements (ICEs): What they do and how they work. Annu Rev Genet 2015;49:577–601.
-
(2015)
Annu Rev Genet
, vol.49
, pp. 577-601
-
-
Johnson, CM1
Grossman, AD.2
-
121
-
-
84963813204
-
The composition of the cell envelope affects conjugation in Bacillus subtilis
-
Johnson CM, Grossman AD. The composition of the cell envelope affects conjugation in Bacillus subtilis. J Bacteriol 2016;198:1241–9.
-
(2016)
J Bacteriol
, vol.198
, pp. 1241-1249
-
-
Johnson, CM1
Grossman, AD.2
-
122
-
-
33846643066
-
Novel type IV secretion system involved in propagation of genomic islands
-
Juhas M, Crook DW, Dimopoulou ID et al. Novel type IV secretion system involved in propagation of genomic islands. J Bacteriol 2007;189:761–71.
-
(2007)
J Bacteriol
, vol.189
, pp. 761-771
-
-
Juhas, M1
Crook, DW2
Dimopoulou, ID3
-
123
-
-
60149088444
-
Genomic islands: tools of bacterial horizontal gene transfer and evolution
-
Juhas M, van der Meer JR, Gaillard M et al. Genomic islands: tools of bacterial horizontal gene transfer and evolution. FEMS Microbiol Rev 2009;33:376–93.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 376-393
-
-
Juhas, M1
van der Meer, JR2
Gaillard, M3
-
124
-
-
84863995620
-
Roles of Exc protein and DNA homology in the CTnDOT excision reaction
-
Keeton CM, Gardner JF. Roles of Exc protein and DNA homology in the CTnDOT excision reaction. J Bacteriol 2012;194:3368–76.
-
(2012)
J Bacteriol
, vol.194
, pp. 3368-3376
-
-
Keeton, CM1
Gardner, JF.2
-
125
-
-
84881023118
-
Interactions of the excision proteins of CTnDOT in the attR intasome
-
Keeton CM, Hopp CM, Yoneji S et al. Interactions of the excision proteins of CTnDOT in the attR intasome. Plasmid 2013a;70:190–200.
-
(2013)
Plasmid
, vol.70
, pp. 190-200
-
-
Keeton, CM1
Hopp, CM2
Yoneji, S3
-
126
-
-
84873525302
-
The excision proteins of CTnDOT positively regulate the transfer operon
-
Keeton CM, Park J, Wang GR et al. The excision proteins of CTnDOT positively regulate the transfer operon. Plasmid 2013b;69:172–9.
-
(2013)
Plasmid
, vol.69
, pp. 172-179
-
-
Keeton, CM1
Park, J2
Wang, GR3
-
127
-
-
14544295333
-
A large, mobile pathogenicity island confers plant pathogenicity on Streptomyces species
-
Kers JA, Cameron KD, Joshi MV et al. A large, mobile pathogenicity island confers plant pathogenicity on Streptomyces species. Mol Microbiol 2005;55:1025–33.
-
(2005)
Mol Microbiol
, vol.55
, pp. 1025-1033
-
-
Kers, JA1
Cameron, KD2
Joshi, MV3
-
128
-
-
84859103889
-
Pseudomonas aeruginosa genomic structure and diversity
-
Klockgether J, Cramer N, Wiehlmann L et al. Pseudomonas aeruginosa genomic structure and diversity. Front Microbiol 2011;2:150.
-
(2011)
Front Microbiol
, vol.2
, pp. 150
-
-
Klockgether, J1
Cramer, N2
Wiehlmann, L3
-
129
-
-
78751527447
-
Networks of gene sharing among 329 proteobacterial genomes reveal differences in lateral gene transfer frequency at different phylogenetic depths
-
Kloesges T, Popa O, Martin W et al. Networks of gene sharing among 329 proteobacterial genomes reveal differences in lateral gene transfer frequency at different phylogenetic depths. Mol Biol Evol 2011;28:1057–74.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 1057-1074
-
-
Kloesges, T1
Popa, O2
Martin, W3
-
130
-
-
0022546772
-
Large, unstable inserts in the chromosome affect virulence properties of uropathogenic Escherichia coli O6 strain 536
-
Knapp S, Hacker J, Jarchau T et al. Large, unstable inserts in the chromosome affect virulence properties of uropathogenic Escherichia coli O6 strain 536. J Bacteriol 1986;168: 22–30.
-
(1986)
J Bacteriol
, vol.168
, pp. 22-30
-
-
Knapp, S1
Hacker, J2
Jarchau, T3
-
131
-
-
70349465006
-
Comparative systems biology across an evolutionary gradient within the Shewanella genus
-
Konstantinidis KT, Serres MH, Romine MF et al. Comparative systems biology across an evolutionary gradient within the Shewanella genus. P Natl Acad Sci USA 2009;106:15909–14.
-
(2009)
P Natl Acad Sci USA
, vol.106
, pp. 15909-15914
-
-
Konstantinidis, KT1
Serres, MH2
Romine, MF3
-
132
-
-
84886801257
-
Virus world as an evolutionary network of viruses and capsidless selfish elements
-
Koonin EV, Dolja VV. Virus world as an evolutionary network of viruses and capsidless selfish elements. Microbiol Mol Biol R 2014;78:278–303.
-
(2014)
Microbiol Mol Biol R
, vol.78
, pp. 278-303
-
-
Koonin, EV1
Dolja, VV.2
-
133
-
-
57149085868
-
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
-
Koonin EV, Wolf YI. Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world. Nucleic Acids Res 2008;36:6688–719.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6688-6719
-
-
Koonin, EV1
Wolf, YI.2
-
134
-
-
78650103372
-
The accessory genome of Pseudomonas aeruginosa
-
Kung VL, Ozer EA, Hauser AR. The accessory genome of Pseudomonas aeruginosa. Microbiol Mol Biol R 2010;74:621–41.
-
(2010)
Microbiol Mol Biol R
, vol.74
, pp. 621-641
-
-
Kung, VL1
Ozer, EA2
Hauser, AR.3
-
135
-
-
25444489027
-
Phenotypic diversity, population growth, and information in fluctuating environments
-
Kussell E, Leibler S. Phenotypic diversity, population growth, and information in fluctuating environments. Science 2005;309:2075–8.
-
(2005)
Science
, vol.309
, pp. 2075-2078
-
-
Kussell, E1
Leibler, S.2
-
136
-
-
77951115860
-
Detecting genomic islands using bioinformatics approaches
-
Langille MG, Hsiao WW, Brinkman FS. Detecting genomic islands using bioinformatics approaches. Nat Rev Microbiol 2010;8:373–82.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 373-382
-
-
Langille, MG1
Hsiao, WW2
Brinkman, FS.3
-
137
-
-
84876198817
-
IntDOT interactions with core sites during integrative recombination
-
Laprise J, Yoneji S, Gardner JF. IntDOT interactions with core sites during integrative recombination. J Bacteriol 2013;195:1883–91.
-
(2013)
J Bacteriol
, vol.195
, pp. 1883-1891
-
-
Laprise, J1
Yoneji, S2
Gardner, JF.3
-
138
-
-
0032482924
-
Molecular archaeology of the Escherichia coli genome
-
Lawrence JG, Ochman H. Molecular archaeology of the Escherichia coli genome. P Natl Acad Sci USA 1998;95:9413–7.
-
(1998)
P Natl Acad Sci USA
, vol.95
, pp. 9413-9417
-
-
Lawrence, JG1
Ochman, H.2
-
139
-
-
36549062382
-
Identification and characterization of int (integrase), xis (excisionase) and chromosomal attachment sites of the integrative and conjugative element ICEBs1 of Bacillus subtilis
-
Lee CA, Auchtung JM, Monson RE et al. Identification and characterization of int (integrase), xis (excisionase) and chromosomal attachment sites of the integrative and conjugative element ICEBs1 of Bacillus subtilis. Mol Microbiol 2007;66:1356–69.
-
(2007)
Mol Microbiol
, vol.66
, pp. 1356-1369
-
-
Lee, CA1
Auchtung, JM2
Monson, RE3
-
140
-
-
74349093158
-
Autonomous plasmid-like replication of a conjugative transposon
-
Lee CA, Babic A, Grossman AD. Autonomous plasmid-like replication of a conjugative transposon. Mol Microbiol 2010;75: 268–79.
-
(2010)
Mol Microbiol
, vol.75
, pp. 268-279
-
-
Lee, CA1
Babic, A2
Grossman, AD.3
-
141
-
-
35048903315
-
Identification of the origin of transfer (oriT) and DNA relaxase required for conjugation of the integrative and conjugative element ICEBs1 of Bacillus subtilis
-
Lee CA, Grossman AD. Identification of the origin of transfer (oriT) and DNA relaxase required for conjugation of the integrative and conjugative element ICEBs1 of Bacillus subtilis. J Bacteriol 2007;189:7254–61.
-
(2007)
J Bacteriol
, vol.189
, pp. 7254-7261
-
-
Lee, CA1
Grossman, AD.2
-
142
-
-
84864008614
-
The Bacillus subtilis conjugative transposon ICEBs1 mobilizes plasmids lacking dedicated mobilization functions
-
Lee CA, Thomas J, Grossman AD. The Bacillus subtilis conjugative transposon ICEBs1 mobilizes plasmids lacking dedicated mobilization functions. J Bacteriol 2012;194:3165–72.
-
(2012)
J Bacteriol
, vol.194
, pp. 3165-3172
-
-
Lee, CA1
Thomas, J2
Grossman, AD.3
-
143
-
-
84937019768
-
Critical components of the conjugation machinery of the Integrative and Conjugative Element ICEBs1 of Bacillus subtilis
-
Leonetti CT, Hamada MA, Laurer SJ et al. Critical components of the conjugation machinery of the Integrative and Conjugative Element ICEBs1 of Bacillus subtilis. J Bacteriol 2015;197:2558–67.
-
(2015)
J Bacteriol
, vol.197
, pp. 2558-2567
-
-
Leonetti, CT1
Hamada, MA2
Laurer, SJ3
-
144
-
-
0036047412
-
Bacterial conjugation: a two-step mechanism for DNA transport
-
Llosa M, Gomis-Ruth FX, Coll M et al. Bacterial conjugation: a two-step mechanism for DNA transport. Mol Microbiol 2002;45:1–8.
-
(2002)
Mol Microbiol
, vol.45
, pp. 1-8
-
-
Llosa, M1
Gomis-Ruth, FX2
Coll, M3
-
145
-
-
84866043524
-
The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome
-
Lopez-Sanchez MJ, Sauvage E, Da Cunha V et al. The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome. Mol Microbiol 2012;85: 1057–71.
-
(2012)
Mol Microbiol
, vol.85
, pp. 1057-1071
-
-
Lopez-Sanchez, MJ1
Sauvage, E2
Da Cunha, V3
-
146
-
-
0028353171
-
Conjugative transposition: Tn916 integrase contains two independent DNA binding domains that recognize different DNA sequences
-
Lu F, Churchward G. Conjugative transposition: Tn916 integrase contains two independent DNA binding domains that recognize different DNA sequences. EMBO J 1994;13:1541–8.
-
(1994)
EMBO J
, vol.13
, pp. 1541-1548
-
-
Lu, F1
Churchward, G.2
-
147
-
-
0028929557
-
Tn916 target DNA sequences bind the C-terminal domain of integrase protein with different affinities that correlate with transposon insertion frequency
-
Lu F, Churchward G. Tn916 target DNA sequences bind the C-terminal domain of integrase protein with different affinities that correlate with transposon insertion frequency. J Bacteriol 1995;177:1938–46.
-
(1995)
J Bacteriol
, vol.177
, pp. 1938-1946
-
-
Lu, F1
Churchward, G.2
-
148
-
-
33748055114
-
H-NS mediates the silencing of laterally acquired genes in bacteria
-
Lucchini S, Rowley G, Goldberg MD et al. H-NS mediates the silencing of laterally acquired genes in bacteria. PLoS Pathog 2006;2:e81.
-
(2006)
PLoS Pathog
, vol.2
, pp. e81
-
-
Lucchini, S1
Rowley, G2
Goldberg, MD3
-
149
-
-
34547604468
-
Noise in gene expression determines cell fate in Bacillus subtilis
-
Maamar H, Raj A, Dubnau D. Noise in gene expression determines cell fate in Bacillus subtilis. Science 2007;317:526–9.
-
(2007)
Science
, vol.317
, pp. 526-529
-
-
Maamar, H1
Raj, A2
Dubnau, D.3
-
150
-
-
33748639032
-
Requirement for Vibrio cholerae integration host factor in conjugative DNA transfer
-
McLeod SM, Burrus V, Waldor MK. Requirement for Vibrio cholerae integration host factor in conjugative DNA transfer. J Bacteriol 2006;188:5704–11.
-
(2006)
J Bacteriol
, vol.188
, pp. 5704-5711
-
-
McLeod, SM1
Burrus, V2
Waldor, MK.3
-
151
-
-
64049089250
-
Mutational analysis and homology-based modeling of the IntDOT core-binding domain
-
Malanowska K, Cioni J, Swalla BM et al. Mutational analysis and homology-based modeling of the IntDOT core-binding domain. J Bacteriol 2009;191:2330–9.
-
(2009)
J Bacteriol
, vol.191
, pp. 2330-2339
-
-
Malanowska, K1
Cioni, J2
Swalla, BM3
-
152
-
-
33745273841
-
Characterization of a conjugative transposon integrase, IntDOT
-
Malanowska K, Salyers AA, Gardner JF. Characterization of a conjugative transposon integrase, IntDOT. Mol Microbiol 2006;60:1228–40.
-
(2006)
Mol Microbiol
, vol.60
, pp. 1228-1240
-
-
Malanowska, K1
Salyers, AA2
Gardner, JF.3
-
153
-
-
34848821714
-
CTnDOT integrase performs homology-dependent and homology-independent strand exchanges
-
Malanowska K, Yoneji S, Salyers AA et al. CTnDOT integrase performs homology-dependent and homology-independent strand exchanges. Nucleic Acids Res 2007;38:5861–73.
-
(2007)
Nucleic Acids Res
, vol.38
, pp. 5861-5873
-
-
Malanowska, K1
Yoneji, S2
Salyers, AA3
-
154
-
-
0032938505
-
Regulation of excision of the conjugative transposon Tn916
-
Marra D, Scott JR. Regulation of excision of the conjugative transposon Tn916. Mol Microbiol 1999;31:609–21.
-
(1999)
Mol Microbiol
, vol.31
, pp. 609-621
-
-
Marra, D1
Scott, JR.2
-
155
-
-
19944390225
-
Interactions between inner membrane proteins in donor and recipient cells limit conjugal DNA transfer
-
Marrero J, Waldor MK. Interactions between inner membrane proteins in donor and recipient cells limit conjugal DNA transfer. Dev Cell 2005;8:963–70.
-
(2005)
Dev Cell
, vol.8
, pp. 963-970
-
-
Marrero, J1
Waldor, MK.2
-
156
-
-
34548497144
-
Determinants of entry exclusion within Eex and TraG are cytoplasmic
-
Marrero J, Waldor MK. Determinants of entry exclusion within Eex and TraG are cytoplasmic. J Bacteriol 2007a;189:6469–73.
-
(2007)
J Bacteriol
, vol.189
, pp. 6469-6473
-
-
Marrero, J1
Waldor, MK.2
-
157
-
-
34247846226
-
The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups
-
Marrero J, Waldor MK. The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups. J Bacteriol 2007b;189:3302–5.
-
(2007)
J Bacteriol
, vol.189
, pp. 3302-3305
-
-
Marrero, J1
Waldor, MK.2
-
158
-
-
84927768646
-
Evolutionary insight from whole-genome sequencing of Pseudomonas aeruginosa from cystic fibrosis patients
-
Marvig RL, Sommer LM, Jelsbak L et al. Evolutionary insight from whole-genome sequencing of Pseudomonas aeruginosa from cystic fibrosis patients. Future Microbiol 2015;10:599–611.
-
(2015)
Future Microbiol
, vol.10
, pp. 599-611
-
-
Marvig, RL1
Sommer, LM2
Jelsbak, L3
-
159
-
-
42949094250
-
Dynamics of Pseudomonas aeruginosa genome evolution
-
Mathee K, Narasimhan G, Valdes C et al. Dynamics of Pseudomonas aeruginosa genome evolution. P Natl Acad Sci USA 2008;105:3100–5.
-
(2008)
P Natl Acad Sci USA
, vol.105
, pp. 3100-3105
-
-
Mathee, K1
Narasimhan, G2
Valdes, C3
-
160
-
-
84880790228
-
Selective pressures to maintain attachment site specificity of integrative and conjugative elements
-
Menard KL, Grossman AD. Selective pressures to maintain attachment site specificity of integrative and conjugative elements. PLoS Genet 2013;9:e1003623.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003623
-
-
Menard, KL1
Grossman, AD.2
-
161
-
-
84880822645
-
The pathogenicity island encoded PvrSR/RcsCB regulatory network controls biofilm formation and dispersal in Pseudomonas aeruginosa PA14
-
Mikkelsen H, Hui K, Barraud N et al. The pathogenicity island encoded PvrSR/RcsCB regulatory network controls biofilm formation and dispersal in Pseudomonas aeruginosa PA14. Mol Microbiol 2013;89:450–63.
-
(2013)
Mol Microbiol
, vol.89
, pp. 450-463
-
-
Mikkelsen, H1
Hui, K2
Barraud, N3
-
162
-
-
58549105920
-
Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas
-
Minoia M, Gaillard M, Reinhard F et al. Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas. P Natl Acad Sci USA 2008;105:20792–7.
-
(2008)
P Natl Acad Sci USA
, vol.105
, pp. 20792-20797
-
-
Minoia, M1
Gaillard, M2
Reinhard, F3
-
163
-
-
84921859357
-
Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds
-
Miyazaki R, Bertelli C, Benaglio P et al. Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds. Environ Microbiol 2015;17:91–104.
-
(2015)
Environ Microbiol
, vol.17
, pp. 91-104
-
-
Miyazaki, R1
Bertelli, C2
Benaglio, P3
-
164
-
-
84864600754
-
Cellular variability of RpoS expression underlies subpopulation activation of an integrative and conjugative element
-
Miyazaki R, Minoia M, Pradervand N et al. Cellular variability of RpoS expression underlies subpopulation activation of an integrative and conjugative element. PLoS Genet 2012;8:e1002818.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002818
-
-
Miyazaki, R1
Minoia, M2
Pradervand, N3
-
165
-
-
78751687819
-
A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13
-
Miyazaki R, van der Meer JR. A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13. Mol Microbiol 2011a;79:743–58.
-
(2011)
Mol Microbiol
, vol.79
, pp. 743-758
-
-
Miyazaki, R1
van der Meer, JR.2
-
166
-
-
84879820222
-
A new large-DNA-fragment delivery system based on integrase activity from an integrative and conjugative element
-
Miyazaki R, van der Meer JR. A new large-DNA-fragment delivery system based on integrase activity from an integrative and conjugative element. Appl Environ Microb 2013;79:4440–7.
-
(2013)
Appl Environ Microb
, vol.79
, pp. 4440-4447
-
-
Miyazaki, R1
van der Meer, JR.2
-
167
-
-
84930904699
-
How can a dual oriT system contribute to efficient transfer of an integrative and conjugative element?
-
Miyazaki R, van der Meer JR. How can a dual oriT system contribute to efficient transfer of an integrative and conjugative element? Mobile Genetic Elements 2011b;1:82–4.
-
(2011)
Mobile Genetic Elements
, vol.1
, pp. 82-84
-
-
Miyazaki, R1
van der Meer, JR.2
-
168
-
-
9244235517
-
Transferable antibiotic resistance elements in Haemophilus influenzae share a common evolutionary origin with a diverse family of syntenic genomic islands
-
Mohd-Zain Z, Turner SL, Cerdeño-Tárraga AM et al. Transferable antibiotic resistance elements in Haemophilus influenzae share a common evolutionary origin with a diverse family of syntenic genomic islands. J Bacteriol 2004;186:8114–22.
-
(2004)
J Bacteriol
, vol.186
, pp. 8114-8122
-
-
Mohd-Zain, Z1
Turner, SL2
Cerdeño-Tárraga, AM3
-
169
-
-
23644439424
-
Regulation of excision genes of the Bacteroides conjugative transposon CTnDOT
-
Moon K, Shoemaker NB, Gardner JF et al. Regulation of excision genes of the Bacteroides conjugative transposon CTnDOT. J Bacteriol 2005;187:5732–41.
-
(2005)
J Bacteriol
, vol.187
, pp. 5732-5741
-
-
Moon, K1
Shoemaker, NB2
Gardner, JF3
-
170
-
-
8144222968
-
Genetic analysis of phenoxyalkanoic acid degradation in Sphingomonas herbicidovorans MH
-
Müller TA, Byrde SM, Werlen C et al. Genetic analysis of phenoxyalkanoic acid degradation in Sphingomonas herbicidovorans MH. Appl Environ Microb 2004;70:6066–75.
-
(2004)
Appl Environ Microb
, vol.70
, pp. 6066-6075
-
-
Müller, TA1
Byrde, SM2
Werlen, C3
-
171
-
-
0037345571
-
Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia
-
Müller TA, Werlen C, Spain J et al. Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia. Environ Microbiol 2003;5:163–73.
-
(2003)
Environ Microbiol
, vol.5
, pp. 163-173
-
-
Müller, TA1
Werlen, C2
Spain, J3
-
172
-
-
34250679010
-
The orf4 gene of the enterobacterial ICE, R391, encodes a novel UV-inducible recombination directionality factor, Jef, involved in excision and transfer of the ICE
-
O’Halloran JA, McGrath BM, Pembroke JT. The orf4 gene of the enterobacterial ICE, R391, encodes a novel UV-inducible recombination directionality factor, Jef, involved in excision and transfer of the ICE. FEMS Microbiol Lett 2007;272:99–105.
-
(2007)
FEMS Microbiol Lett
, vol.272
, pp. 99-105
-
-
O’Halloran, JA1
McGrath, BM2
Pembroke, JT.3
-
173
-
-
42549128822
-
Genomic and functional analysis of ICEPdaSpa1, a fish-pathogen-derived SXT-related integrating conjugative element that can mobilize a virulence plasmid
-
Osorio CR, Marrero J, Wozniak RAF et al. Genomic and functional analysis of ICEPdaSpa1, a fish-pathogen-derived SXT-related integrating conjugative element that can mobilize a virulence plasmid. J Bacteriol 2008;190:3353–61.
-
(2008)
J Bacteriol
, vol.190
, pp. 3353-3361
-
-
Osorio, CR1
Marrero, J2
Wozniak, RAF3
-
174
-
-
84864112797
-
High expression hampers horizontal gene transfer
-
Park C, Zhang J. High expression hampers horizontal gene transfer. Genome Biol Evol 2012;4:523–32.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 523-532
-
-
Park, C1
Zhang, J.2
-
175
-
-
78650128769
-
Characterization of the Bacteroides CTnDOT regulatory protein RteC
-
Park J, Salyers AA. Characterization of the Bacteroides CTnDOT regulatory protein RteC. J Bacteriol 2011;193:91–7.
-
(2011)
J Bacteriol
, vol.193
, pp. 91-97
-
-
Park, J1
Salyers, AA.2
-
176
-
-
1942535184
-
Evolution of genomic islands by deletion and tandem accretion by site-specific recombination: ICESt1-related elements from Streptococcus thermophilus
-
Pavlovic G, Burrus V, Gintz B et al. Evolution of genomic islands by deletion and tandem accretion by site-specific recombination: ICESt1-related elements from Streptococcus thermophilus. Microbiology 2004;150:759–74.
-
(2004)
Microbiology
, vol.150
, pp. 759-774
-
-
Pavlovic, G1
Burrus, V2
Gintz, B3
-
177
-
-
15544388848
-
Noise propagation in gene networks
-
Pedraza JM, van Oudenaarden A. Noise propagation in gene networks. Science 2005;307:1965–9.
-
(2005)
Science
, vol.307
, pp. 1965-1969
-
-
Pedraza, JM1
van Oudenaarden, A.2
-
178
-
-
77956546407
-
Genetic and functional analyses of the mob operon on conjugative transposon CTn341 from Bacteroides spp
-
Peed L, Parker AC, Smith CJ. Genetic and functional analyses of the mob operon on conjugative transposon CTn341 from Bacteroides spp. J Bacteriol 2010;192:4643–50.
-
(2010)
J Bacteriol
, vol.192
, pp. 4643-4650
-
-
Peed, L1
Parker, AC2
Smith, CJ.3
-
179
-
-
80053914379
-
Trends and barriers to lateral gene transfer in prokaryotes
-
Popa O, Dagan T. Trends and barriers to lateral gene transfer in prokaryotes. Curr Opin Microbiol 2011;14:615–23.
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 615-623
-
-
Popa, O1
Dagan, T.2
-
180
-
-
84949634977
-
A lambda Cro-like repressor is essential for the induction of conjugative transfer of SXT/R391 elements in response to DNA damage
-
Poulin-Laprade D, Burrus V. A lambda Cro-like repressor is essential for the induction of conjugative transfer of SXT/R391 elements in response to DNA damage. J Bacteriol 2015;197:3822–33.
-
(2015)
J Bacteriol
, vol.197
, pp. 3822-3833
-
-
Poulin-Laprade, D1
Burrus, V.2
-
181
-
-
84938944055
-
The extended regulatory networks of SXT/R391 integrative and conjugative elements and IncA/C conjugative plasmids
-
Poulin-Laprade D, Carraro N, Burrus V. The extended regulatory networks of SXT/R391 integrative and conjugative elements and IncA/C conjugative plasmids. Front Microbiol 2015;6:837.
-
(2015)
Front Microbiol
, vol.6
, pp. 837
-
-
Poulin-Laprade, D1
Carraro, N2
Burrus, V.3
-
182
-
-
84941026346
-
Transfer activation of SXT/R391 integrative and conjugative elements: unraveling the SetCD regulon
-
Poulin-Laprade D, Matteau D, Jacques PE et al. Transfer activation of SXT/R391 integrative and conjugative elements: unraveling the SetCD regulon. Nucleic Acids Res 2015;43:2045–56.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 2045-2056
-
-
Poulin-Laprade, D1
Matteau, D2
Jacques, PE3
-
183
-
-
0028877557
-
Conjugative transposition of Tn916-related elements from Enterococcus faecalis to Escherichia coli and Pseudomonas fluorescens
-
Poyart C, Celli J, Trieu-Cuot P. Conjugative transposition of Tn916-related elements from Enterococcus faecalis to Escherichia coli and Pseudomonas fluorescens. Antimicrobiol Agents Ch 1995;39:500–6.
-
(1995)
Antimicrobiol Agents Ch
, vol.39
, pp. 500-506
-
-
Poyart, C1
Celli, J2
Trieu-Cuot, P.3
-
184
-
-
84917711112
-
The TetR-type MfsR protein of the integrative and conjugative element ICEclc controls both a putative efflux system and initiation of ICE transfer
-
Pradervand N, Delavat F, Sulser S et al. The TetR-type MfsR protein of the integrative and conjugative element ICEclc controls both a putative efflux system and initiation of ICE transfer. J Bacteriol 2014a;196:3971–9.
-
(2014)
J Bacteriol
, vol.196
, pp. 3971-3979
-
-
Pradervand, N1
Delavat, F2
Sulser, S3
-
185
-
-
84903460610
-
An operon of three transcriptional regulators controls horizontal gene transfer of the Integrative and Conjugative Element ICEclc in Pseudomonas knackmussii B13
-
Pradervand N, Sulser S, Delavat F et al. An operon of three transcriptional regulators controls horizontal gene transfer of the Integrative and Conjugative Element ICEclc in Pseudomonas knackmussii B13. PLoS Genet 2014b;10:e1004441.
-
(2014)
PLoS Genet
, vol.10
, pp. e1004441
-
-
Pradervand, N1
Sulser, S2
Delavat, F3
-
186
-
-
84908439725
-
Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli
-
Raeside C, Gaffe J, Deatherage DE et al. Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli. MBio 2014;5:e01377–14.
-
(2014)
MBio
, vol.5
, pp. e01377-14
-
-
Raeside, C1
Gaffe, J2
Deatherage, DE3
-
187
-
-
84871409152
-
A widely conserved molecular switch controls quorum sensing and symbiosis island transfer in Mesorhizobium loti through expression of a novel antiactivator
-
Ramsay JP, Major AS, Komarovsky VM et al. A widely conserved molecular switch controls quorum sensing and symbiosis island transfer in Mesorhizobium loti through expression of a novel antiactivator. Mol Microbiol 2013;87:1–13.
-
(2013)
Mol Microbiol
, vol.87
, pp. 1-13
-
-
Ramsay, JP1
Major, AS2
Komarovsky, VM3
-
188
-
-
70350170511
-
A LuxRI-family regulatory system controls excision and transfer of the Mesorhizobium loti strain R7A symbiosis island by activating expression of two conserved hypothetical genes
-
Ramsay JP, Sullivan JT, Jambari N et al. A LuxRI-family regulatory system controls excision and transfer of the Mesorhizobium loti strain R7A symbiosis island by activating expression of two conserved hypothetical genes. Mol Microbiol 2009;73:1141–55.
-
(2009)
Mol Microbiol
, vol.73
, pp. 1141-1155
-
-
Ramsay, JP1
Sullivan, JT2
Jambari, N3
-
189
-
-
33750015243
-
Excision and transfer of the Mesorhizobium loti R7A symbiosis island requires an integrase IntS, a novel recombination directionality factor RdfS, and a putative relaxase RlxS
-
Ramsay JP, Sullivan JT, Stuart GS et al. Excision and transfer of the Mesorhizobium loti R7A symbiosis island requires an integrase IntS, a novel recombination directionality factor RdfS, and a putative relaxase RlxS. Mol Microbiol 2006;62:723–34.
-
(2006)
Mol Microbiol
, vol.62
, pp. 723-734
-
-
Ramsay, JP1
Sullivan, JT2
Stuart, GS3
-
190
-
-
84926039641
-
Ribosomal frameshifting and dual-target antiactivation restrict quorum-sensing-activated transfer of a mobile genetic element
-
Ramsay JP, Tester LG, Major AS et al. Ribosomal frameshifting and dual-target antiactivation restrict quorum-sensing-activated transfer of a mobile genetic element. P Natl Acad Sci USA 2015;112:4104–9.
-
(2015)
P Natl Acad Sci USA
, vol.112
, pp. 4104-4109
-
-
Ramsay, JP1
Tester, LG2
Major, AS3
-
192
-
-
0031751325
-
Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13
-
Ravatn R, Studer S, Springael D et al. Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13. J Bacteriol 1998a;180:4360–9.
-
(1998)
J Bacteriol
, vol.180
, pp. 4360-4369
-
-
Ravatn, R1
Studer, S2
Springael, D3
-
193
-
-
0031740749
-
Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. strain B13
-
Ravatn R, Studer S, Zehnder AJB et al. Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. strain B13. J Bacteriol 1998b;180:5505–14.
-
(1998)
J Bacteriol
, vol.180
, pp. 5505-5514
-
-
Ravatn, R1
Studer, S2
Zehnder, AJB3
-
194
-
-
0031745938
-
Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated–sludge microcosms
-
Ravatn R, Zehnder AJB, van der Meer JR. Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated–sludge microcosms. Appl Environ Microb 1998;64:2126–32.
-
(1998)
Appl Environ Microb
, vol.64
, pp. 2126-2132
-
-
Ravatn, R1
Zehnder, AJB2
van der Meer, JR.3
-
195
-
-
84974721595
-
Microcolony growth assays
-
Timmis KN, de Lorenzo McGenity T et al. (eds) Berlin Heidelberg: Springer
-
Reinhard F, van der Meer JR. Microcolony growth assays. In: Timmis KN, de Lorenzo V, McGenity T et al. (eds) Handbook of Hydrocarbon and Lipid Microbiology, Vol. 5. Berlin Heidelberg: Springer, 2010, 3562–70.
-
(2010)
Handbook of Hydrocarbon and Lipid Microbiology
, vol.5
, pp. 3562-3570
-
-
Reinhard, F1
van der Meer, JR.2
-
196
-
-
84873407777
-
Cell differentiation to”mating bodies” induced by an integrating and conjugative element in free-living bacteria
-
Reinhard F, Miyazaki R, Pradervand N et al. Cell differentiation to”mating bodies” induced by an integrating and conjugative element in free-living bacteria. Curr Biol 2013;23:255–9.
-
(2013)
Curr Biol
, vol.23
, pp. 255-259
-
-
Reinhard, F1
Miyazaki, R2
Pradervand, N3
-
197
-
-
84895725194
-
Improved statistical analysis of low abundance phenomena in bimodal bacterial populations
-
Reinhard F, van der Meer JR. Improved statistical analysis of low abundance phenomena in bimodal bacterial populations. PLoS One 2013;8:e78288.
-
(2013)
PLoS One
, vol.8
, pp. e78288
-
-
Reinhard, F1
van der Meer, JR.2
-
198
-
-
84895724686
-
Life history analysis of integrative and conjugative element activation in growing microcolonies of Pseudomonas
-
Reinhard F, van der Meer JR. Life history analysis of integrative and conjugative element activation in growing microcolonies of Pseudomonas. J Bacteriol 2014;196:1425–34.
-
(2014)
J Bacteriol
, vol.196
, pp. 1425-1434
-
-
Reinhard, F1
van der Meer, JR.2
-
199
-
-
84961315008
-
The Bacteroides thetaiotaomicron protein Bacteroides host factor A participates in integration of the integrative conjugative element CTnDOT into the chromosome
-
Ringwald K, Gardner J. The Bacteroides thetaiotaomicron protein Bacteroides host factor A participates in integration of the integrative conjugative element CTnDOT into the chromosome. J Bacteriol 2015;197:1339–49.
-
(2015)
J Bacteriol
, vol.197
, pp. 1339-1349
-
-
Ringwald, K1
Gardner, J.2
-
200
-
-
66249099218
-
A modular master on the move: the Tn916 family of mobile genetic elements
-
Roberts AP, Mullany P. A modular master on the move: the Tn916 family of mobile genetic elements. Trends Microbiol 2009;17:251–8.
-
(2009)
Trends Microbiol
, vol.17
, pp. 251-258
-
-
Roberts, AP1
Mullany, P.2
-
201
-
-
33644862811
-
The integrase of the conjugative transposon Tn916 directs strand- and sequence-specific cleavage of the origin of conjugal transfer, oriT, by the endonuclease Orf20
-
Rocco JM, Churchward G. The integrase of the conjugative transposon Tn916 directs strand- and sequence-specific cleavage of the origin of conjugal transfer, oriT, by the endonuclease Orf20. J Bacteriol 2006;188:2207–13.
-
(2006)
J Bacteriol
, vol.188
, pp. 2207-2213
-
-
Rocco, JM1
Churchward, G.2
-
202
-
-
0036606915
-
Base composition bias might result from competition for metabolic resources
-
Rocha EP, Danchin A. Base composition bias might result from competition for metabolic resources. Trends Genet 2002;18:291–4.
-
(2002)
Trends Genet
, vol.18
, pp. 291-294
-
-
Rocha, EP1
Danchin, A.2
-
203
-
-
80052032329
-
A quantitative account of genomic island acquisitions in prokaryotes
-
Roos TE, van Passel MW. A quantitative account of genomic island acquisitions in prokaryotes. BMC Genomics 2011;12:427.
-
(2011)
BMC Genomics
, vol.12
, pp. 427
-
-
Roos, TE1
van Passel, MW.2
-
204
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld N, Young JW, Alon U et al. Gene regulation at the single-cell level. Science 2005;307:1962–5.
-
(2005)
Science
, vol.307
, pp. 1962-1965
-
-
Rosenfeld, N1
Young, JW2
Alon, U3
-
205
-
-
0030800329
-
Excision of a conjugative transposon in vitro by the Int and Xis proteins of Tn916
-
Rudy C, Taylor KL, Hinerfeld D et al. Excision of a conjugative transposon in vitro by the Int and Xis proteins of Tn916. Nucleic Acids Res 1997;25:4061–6.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4061-4066
-
-
Rudy, C1
Taylor, KL2
Hinerfeld, D3
-
206
-
-
0028308304
-
Length of the coupling sequence of Tn916
-
Rudy CK, Scott JR. Length of the coupling sequence of Tn916. J Bacteriol 1994;176:3386–8.
-
(1994)
J Bacteriol
, vol.176
, pp. 3386-3388
-
-
Rudy, CK1
Scott, JR.2
-
207
-
-
0031000745
-
DNA binding by the Xis protein of the conjugative transposon Tn916
-
Rudy CK, Scott JR, Churchward G. DNA binding by the Xis protein of the conjugative transposon Tn916. J Bacteriol 1997;179:2567–72.
-
(1997)
J Bacteriol
, vol.179
, pp. 2567-2572
-
-
Rudy, CK1
Scott, JR2
Churchward, G.3
-
208
-
-
84983094679
-
Identification and characterization of episomal forms of integrative genomic islands in the genus Francisella
-
Rydzewski K, Tlapak H, Niehaus IP et al. Identification and characterization of episomal forms of integrative genomic islands in the genus Francisella. Int J Med Microbiol 2015;305:874–80.
-
(2015)
Int J Med Microbiol
, vol.305
, pp. 874-880
-
-
Rydzewski, K1
Tlapak, H2
Niehaus, IP3
-
209
-
-
84892995906
-
Reconstructing an ancestral genotype of two hexachlorocyclohexane-degrading Sphingobium species using metagenomic sequence data
-
Sangwan N, Verma H, Kumar R et al. Reconstructing an ancestral genotype of two hexachlorocyclohexane-degrading Sphingobium species using metagenomic sequence data. ISME J 2014;8:398–408.
-
(2014)
ISME J
, vol.8
, pp. 398-408
-
-
Sangwan, N1
Verma, H2
Kumar, R3
-
210
-
-
4644368846
-
The Yersinia high-pathogenicity island (HPI): evolutionary and functional aspects
-
Schubert S, Rakin A, Heesemann J. The Yersinia high-pathogenicity island (HPI): evolutionary and functional aspects. Int J Med Microbiol 2004;294:83–94.
-
(2004)
Int J Med Microbiol
, vol.294
, pp. 83-94
-
-
Schubert, S1
Rakin, A2
Heesemann, J.3
-
211
-
-
0028216655
-
Conjugative transposition of Tn916: preferred targets and evidence for conjugative transfer of a single strand and for a double-stranded circular intermediate
-
Scott JR, Bringel F, Marra D et al. Conjugative transposition of Tn916: preferred targets and evidence for conjugative transfer of a single strand and for a double-stranded circular intermediate. Mol Microbiol 1994;11:1099–108.
-
(1994)
Mol Microbiol
, vol.11
, pp. 1099-1108
-
-
Scott, JR1
Bringel, F2
Marra, D3
-
212
-
-
0024044902
-
An intermediate in transposition of the conjugative transposon Tn916
-
Scott JR, Kirchman PA, Caparon MG. An intermediate in transposition of the conjugative transposon Tn916. P Natl Acad Sci USA 1988;85:4809–13.
-
(1988)
P Natl Acad Sci USA
, vol.85
, pp. 4809-4813
-
-
Scott, JR1
Kirchman, PA2
Caparon, MG.3
-
213
-
-
84937886246
-
CRISPR-based screening of genomic island excision events in bacteria
-
Selle K, Klaenhammer TR, Barrangou R. CRISPR-based screening of genomic island excision events in bacteria. P Natl Acad Sci USA 2015;112:8076–81.
-
(2015)
P Natl Acad Sci USA
, vol.112
, pp. 8076-8081
-
-
Selle, K1
Klaenhammer, TR2
Barrangou, R.3
-
214
-
-
0023868639
-
Genetic organization of the bacterial conjugative transposon Tn916
-
Senghas E, Jones JM, Yamamoto M et al. Genetic organization of the bacterial conjugative transposon Tn916. J Bacteriol 1988;170:245–9.
-
(1988)
J Bacteriol
, vol.170
, pp. 245-249
-
-
Senghas, E1
Jones, JM2
Yamamoto, M3
-
215
-
-
84960193522
-
The stealthy superbug: the role of asymptomatic enteric carriage in maintaining a long-term hospital outbreak of ST228 methicillin-resistant Staphylococcus aureus
-
Senn L, Clerc O, Zanetti G et al. The stealthy superbug: the role of asymptomatic enteric carriage in maintaining a long-term hospital outbreak of ST228 methicillin-resistant Staphylococcus aureus. MBio 2016;7: doi: 10.1128/mBio.02039-15.
-
(2016)
MBio
, vol.7
-
-
Senn, L1
Clerc, O2
Zanetti, G3
-
216
-
-
65949092317
-
Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13
-
Sentchilo V, Czechowska K, Pradervand N et al. Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13. Mol Microbiol 2009;72:1293–306.
-
(2009)
Mol Microbiol
, vol.72
, pp. 1293-1306
-
-
Sentchilo, V1
Czechowska, K2
Pradervand, N3
-
217
-
-
84878275176
-
Community-wide plasmid gene mobilization and selection
-
Sentchilo V, Mayer AP, Guy L et al. Community-wide plasmid gene mobilization and selection. ISME J 2013;7:1173–86.
-
(2013)
ISME J
, vol.7
, pp. 1173-1186
-
-
Sentchilo, V1
Mayer, AP2
Guy, L3
-
218
-
-
0038782123
-
Unusual integrase gene expression on the clc genomic island of Pseudomonas sp. strain B13
-
Sentchilo VS, Ravatn R, Werlen C et al. Unusual integrase gene expression on the clc genomic island of Pseudomonas sp. strain B13. J Bacteriol 2003;185:4530–8.
-
(2003)
J Bacteriol
, vol.185
, pp. 4530-4538
-
-
Sentchilo, VS1
Ravatn, R2
Werlen, C3
-
219
-
-
0038046819
-
Characterization of two alternative promoters and a transcription regulator for integrase expression in the clc catabolic genomic island of Pseudomonas sp. strain B13
-
Sentchilo VS, Zehnder AJB, van der Meer JR. Characterization of two alternative promoters and a transcription regulator for integrase expression in the clc catabolic genomic island of Pseudomonas sp. strain B13. Mol Microbiol 2003;49:93–104.
-
(2003)
Mol Microbiol
, vol.49
, pp. 93-104
-
-
Sentchilo, VS1
Zehnder, AJB2
van der Meer, JR.3
-
220
-
-
53549107458
-
The Orf18 gene product from conjugative transposon Tn916 is an ArdA antirestriction protein that inhibits type I DNA restriction-modification systems
-
Serfiotis-Mitsa D, Roberts GA, Cooper LP et al. The Orf18 gene product from conjugative transposon Tn916 is an ArdA antirestriction protein that inhibits type I DNA restriction-modification systems. J Mol Biol 2008;383:970–81.
-
(2008)
J Mol Biol
, vol.383
, pp. 970-981
-
-
Serfiotis-Mitsa, D1
Roberts, GA2
Cooper, LP3
-
221
-
-
0024522893
-
Cloning and characterization of a Bacteroides conjugal tetracycline-erythromycin resistance element by using a shuttle cosmid vector
-
Shoemaker NB, Barber RD, Salyers AA. Cloning and characterization of a Bacteroides conjugal tetracycline-erythromycin resistance element by using a shuttle cosmid vector. J Bacteriol 1989;171:1294–302.
-
(1989)
J Bacteriol
, vol.171
, pp. 1294-1302
-
-
Shoemaker, NB1
Barber, RD2
Salyers, AA.3
-
222
-
-
0035142427
-
Evidence for extensive resistance gene transfer among Bacteroides spp. and among Bacteroides and other genera in the human colon
-
Shoemaker NB, Vlamakis H, Hayes K et al. Evidence for extensive resistance gene transfer among Bacteroides spp. and among Bacteroides and other genera in the human colon. Appl Environ Microb 2001;67:561–8.
-
(2001)
Appl Environ Microb
, vol.67
, pp. 561-568
-
-
Shoemaker, NB1
Vlamakis, H2
Hayes, K3
-
223
-
-
0029903221
-
NBU1, a mobilizable site-specific integrated element from Bacteroides spp., can integrate nonspecifically in Escherichia coli
-
Shoemaker NB, Wang GR, Salyers AA. NBU1, a mobilizable site-specific integrated element from Bacteroides spp., can integrate nonspecifically in Escherichia coli. J Bacteriol 1996a;178:3601–7.
-
(1996)
J Bacteriol
, vol.178
, pp. 3601-3607
-
-
Shoemaker, NB1
Wang, GR2
Salyers, AA.3
-
224
-
-
0029890508
-
The Bacteroides mobilizable insertion element, NBU1, integrates into the 3 end of a Leu-tRNA gene and has an integrase that is a member of the lambda integrase family
-
Shoemaker NB, Wang GR, Salyers AA. The Bacteroides mobilizable insertion element, NBU1, integrates into the 3 end of a Leu-tRNA gene and has an integrase that is a member of the lambda integrase family. J Bacteriol 1996b;178:3594–600.
-
(1996)
J Bacteriol
, vol.178
, pp. 3594-3600
-
-
Shoemaker, NB1
Wang, GR2
Salyers, AA.3
-
225
-
-
0027484184
-
Excision, transfer, and integration of NBU1, a mobilizable site-selective insertion element
-
Shoemaker NB, Wang GR, Stevens AM et al. Excision, transfer, and integration of NBU1, a mobilizable site-selective insertion element. J Bacteriol 1993;175:6578–87.
-
(1993)
J Bacteriol
, vol.175
, pp. 6578-6587
-
-
Shoemaker, NB1
Wang, GR2
Stevens, AM3
-
226
-
-
0032718713
-
Random transposition by Tn916 in Desulfitobacterium dehalogenans allows for isolation and characterization of halorespiration-deficient mutants
-
Smidt H, Song D, van Der Oost J et al. Random transposition by Tn916 in Desulfitobacterium dehalogenans allows for isolation and characterization of halorespiration-deficient mutants. J Bacteriol 1999;181:6882–8.
-
(1999)
J Bacteriol
, vol.181
, pp. 6882-6888
-
-
Smidt, H1
Song, D2
van Der Oost, J3
-
228
-
-
78649697698
-
The transcriptional regulator Rok binds A+T-rich DNA and is involved in repression of a mobile genetic element in Bacillus subtilis
-
Smits WK, Grossman AD. The transcriptional regulator Rok binds A+T-rich DNA and is involved in repression of a mobile genetic element in Bacillus subtilis. PLoS Genet 2010;6:e1001207.
-
(2010)
PLoS Genet
, vol.6
, pp. e1001207
-
-
Smits, WK1
Grossman, AD.2
-
229
-
-
84937405121
-
Horizontal gene transfer: building the web of life
-
Soucy SM, Huang J, Gogarten JP. Horizontal gene transfer: building the web of life. Nat Rev Genet 2015;16:472–82.
-
(2015)
Nat Rev Genet
, vol.16
, pp. 472-482
-
-
Soucy, SM1
Huang, J2
Gogarten, JP.3
-
230
-
-
0036010635
-
Community shifts in a seeded 3-chlorobenzoate degrading membrane biofilm reactor: indications for involvement of in situ horizontal transfer of the clc-element from inoculum to contaminant bacteria
-
Springael D, Peys K, Ryngaert A et al. Community shifts in a seeded 3-chlorobenzoate degrading membrane biofilm reactor: indications for involvement of in situ horizontal transfer of the clc-element from inoculum to contaminant bacteria. Environ Microbiol 2002;4:70–80.
-
(2002)
Environ Microbiol
, vol.4
, pp. 70-80
-
-
Springael, D1
Peys, K2
Ryngaert, A3
-
231
-
-
0027452374
-
Tetracycline regulation of genes on Bacteroides conjugative transposons
-
Stevens AM, Shoemaker NB, Li LY et al. Tetracycline regulation of genes on Bacteroides conjugative transposons. J Bacteriol 1993;175:6134–41.
-
(1993)
J Bacteriol
, vol.175
, pp. 6134-6141
-
-
Stevens, AM1
Shoemaker, NB2
Li, LY3
-
232
-
-
0025815974
-
Conjugative transposition of Tn916 requires the excisive and integrative activities of the transposon-encoded integrase
-
Storrs MJ, Poyart-Salmeron C, Trieu-Cuot P et al. Conjugative transposition of Tn916 requires the excisive and integrative activities of the transposon-encoded integrase. J Bacteriol 1991;173:4347–52.
-
(1991)
J Bacteriol
, vol.173
, pp. 4347-4352
-
-
Storrs, MJ1
Poyart-Salmeron, C2
Trieu-Cuot, P3
-
233
-
-
0026605348
-
Characterization of the tet(M) determinant of Tn916: evidence for regulation by transcription attenuation
-
Su YA, He P, Clewell DB. Characterization of the tet(M) determinant of Tn916: evidence for regulation by transcription attenuation. Antimicrob Agents Ch 1992;36:769–78.
-
(1992)
Antimicrob Agents Ch
, vol.36
, pp. 769-778
-
-
Su, YA1
He, P2
Clewell, DB.3
-
234
-
-
33645293152
-
An excitable gene regulatory circuit induces transient cellular differentiation
-
Suel GM, Garcia-Ojalvo J, Liberman LM et al. An excitable gene regulatory circuit induces transient cellular differentiation. Nature 2006;440:545–50.
-
(2006)
Nature
, vol.440
, pp. 545-550
-
-
Suel, GM1
Garcia-Ojalvo, J2
Liberman, LM3
-
235
-
-
84872133031
-
The NifA-RpoN regulon of Mesorhizobium loti strain R7A and its symbiotic activation by a novel LacI/GalR-family regulator
-
Sullivan JT, Brown SD, Ronson CW. The NifA-RpoN regulon of Mesorhizobium loti strain R7A and its symbiotic activation by a novel LacI/GalR-family regulator. PLoS One 2013;8:e53762.
-
(2013)
PLoS One
, vol.8
, pp. e53762
-
-
Sullivan, JT1
Brown, SD2
Ronson, CW.3
-
236
-
-
0029049193
-
Nodulating strains of Rhizobium loti arise through chromosomal symbiotic gene transfer in the environment
-
Sullivan JT, Patrick HN, Lowther WL et al. Nodulating strains of Rhizobium loti arise through chromosomal symbiotic gene transfer in the environment. P Natl Acad Sci USA 1995;92:8985–9.
-
(1995)
P Natl Acad Sci USA
, vol.92
, pp. 8985-8989
-
-
Sullivan, JT1
Patrick, HN2
Lowther, WL3
-
237
-
-
0032574728
-
Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene
-
Sullivan JT, Ronson CW. Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene. P Natl Acad Sci USA 1998;95:5145–9.
-
(1998)
P Natl Acad Sci USA
, vol.95
, pp. 5145-5149
-
-
Sullivan, JT1
Ronson, CW.2
-
238
-
-
0036097343
-
Comparative sequence analysis of the symbiosis island of Mesorhizobium loti strain R7A
-
Sullivan JT, Trzebiatowski JR, Cruickshank RW et al. Comparative sequence analysis of the symbiosis island of Mesorhizobium loti strain R7A. J Bacteriol 2002;184:3086–95.
-
(2002)
J Bacteriol
, vol.184
, pp. 3086-3095
-
-
Sullivan, JT1
Trzebiatowski, JR2
Cruickshank, RW3
-
239
-
-
4344624314
-
Factors required in vitro for excision of the Bacteroides conjugative transposon, CTnDOT
-
Sutanto Y, DiChiara JM, Shoemaker NB et al. Factors required in vitro for excision of the Bacteroides conjugative transposon, CTnDOT. Plasmid 2004;52:119–30.
-
(2004)
Plasmid
, vol.52
, pp. 119-130
-
-
Sutanto, Y1
DiChiara, JM2
Shoemaker, NB3
-
240
-
-
0036885879
-
Characterization of Exc, a novel protein required for the excision of Bacteroides conjugative transposon
-
Sutanto Y, Shoemaker NB, Gardner JF et al. Characterization of Exc, a novel protein required for the excision of Bacteroides conjugative transposon. Mol Microbiol 2002;46:1239–46.
-
(2002)
Mol Microbiol
, vol.46
, pp. 1239-1246
-
-
Sutanto, Y1
Shoemaker, NB2
Gardner, JF3
-
241
-
-
0031047128
-
Specific DNA cleavage mediated by the integrase of conjugative transposon Tn916
-
Taylor KL, Churchward G. Specific DNA cleavage mediated by the integrase of conjugative transposon Tn916. J Bacteriol 1997;179:1117–25.
-
(1997)
J Bacteriol
, vol.179
, pp. 1117-1125
-
-
Taylor, KL1
Churchward, G.2
-
242
-
-
2942555282
-
Stochastic gene expression in fluctuating environments
-
Thattai M, van Oudenaarden A. Stochastic gene expression in fluctuating environments. Genetics 2004;167:523–30.
-
(2004)
Genetics
, vol.167
, pp. 523-530
-
-
Thattai, M1
van Oudenaarden, A.2
-
243
-
-
84873514798
-
A conserved helicase processivity factor is needed for conjugation and replication of an integrative and conjugative element
-
Thomas J, Lee CA, Grossman AD. A conserved helicase processivity factor is needed for conjugation and replication of an integrative and conjugative element. PLoS Genet 2013;9:e1003198.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003198
-
-
Thomas, J1
Lee, CA2
Grossman, AD.3
-
244
-
-
79954579296
-
Bistable responses in bacterial genetic networks: designs and dynamical consequences
-
Tiwari A, Ray JC, Narula J et al. Bistable responses in bacterial genetic networks: designs and dynamical consequences. Math Biosci 2011;231:76–89.
-
(2011)
Math Biosci
, vol.231
, pp. 76-89
-
-
Tiwari, A1
Ray, JC2
Narula, J3
-
245
-
-
84907976382
-
The chromosomal accommodation and domestication of mobile genetic elements
-
Touchon M, Bobay LM, Rocha EP. The chromosomal accommodation and domestication of mobile genetic elements. Curr Opin Microbiol 2014;22:22–9.
-
(2014)
Curr Opin Microbiol
, vol.22
, pp. 22-29
-
-
Touchon, M1
Bobay, LM2
Rocha, EP.3
-
246
-
-
0038018390
-
The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids
-
Toussaint A, Merlin C, Monchy S et al. The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids. Appl Environ Microb 2003;69:4837–45.
-
(2003)
Appl Environ Microb
, vol.69
, pp. 4837-4845
-
-
Toussaint, A1
Merlin, C2
Monchy, S3
-
247
-
-
33646891724
-
Evolution of paralogous genes: reconstruction of genome rearrangements through comparison of multiple genomes within Staphylococcus aureus
-
Tsuru T, Kawai M, Mizutani-Ui Y et al. Evolution of paralogous genes: reconstruction of genome rearrangements through comparison of multiple genomes within Staphylococcus aureus. Mol Biol Evol 2006;23:1269–85.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1269-1285
-
-
Tsuru, T1
Kawai, M2
Mizutani-Ui, Y3
-
248
-
-
84952772389
-
Phylogenetic distribution of CRISPR-Cas systems in antibiotic-resistant Pseudomonas aeruginosa
-
van Belkum A, Soriaga LB, LaFave MC et al. Phylogenetic distribution of CRISPR-Cas systems in antibiotic-resistant Pseudomonas aeruginosa. MBio 2015;6:e01796–15.
-
(2015)
MBio
, vol.6
, pp. e01796-15
-
-
van Belkum, A1
Soriaga, LB2
LaFave, MC3
-
249
-
-
0038504021
-
Genomic islands and evolution of catabolic pathways in bacteria
-
van der Meer JR, Sentchilo VS. Genomic islands and evolution of catabolic pathways in bacteria. Curr Opin Biotechnol 2003;14:248–54.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 248-254
-
-
van der Meer, JR1
Sentchilo, VS.2
-
250
-
-
0026480282
-
Molecular mechanisms of genetic adaptation to xenobiotic compounds
-
van der Meer JR, de Vos WM, Harayama S et al. Molecular mechanisms of genetic adaptation to xenobiotic compounds. Microbiol Rev 1992;56:677–94.
-
(1992)
Microbiol Rev
, vol.56
, pp. 677-694
-
-
van der Meer, JR1
de Vos, WM2
Harayama, S3
-
251
-
-
84924282943
-
Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways
-
Verma H, Kumar R, Oldach P et al. Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways. BMC Genomics 2014;15:1014.
-
(2014)
BMC Genomics
, vol.15
, pp. 1014
-
-
Verma, H1
Kumar, R2
Oldach, P3
-
252
-
-
0029986215
-
A new type of conjugative transposon encodes resistance to sulfamethoxazole, trimethoprim, and streptomycin in Vibrio cholerae O139
-
Waldor MK, Tschäpe H, Mekalanos JJ. A new type of conjugative transposon encodes resistance to sulfamethoxazole, trimethoprim, and streptomycin in Vibrio cholerae O139. J Bacteriol 1996;178:4157–65.
-
(1996)
J Bacteriol
, vol.178
, pp. 4157-4165
-
-
Waldor, MK1
Tschäpe, H2
Mekalanos, JJ.3
-
253
-
-
80052960966
-
CTn12256, a chimeric Bacteroides conjugative transposon that consists of two independently active mobile elements
-
Wang GR, Shoemaker NB, Jeters RT et al. CTn12256, a chimeric Bacteroides conjugative transposon that consists of two independently active mobile elements. Plasmid 2011;66:93–105.
-
(2011)
Plasmid
, vol.66
, pp. 93-105
-
-
Wang, GR1
Shoemaker, NB2
Jeters, RT3
-
254
-
-
16844386406
-
Translational control of tetracycline resistance and conjugation in the Bacteroides conjugative transposon CTnDOT
-
Wang Y, Rotman ER, Shoemaker NB et al. Translational control of tetracycline resistance and conjugation in the Bacteroides conjugative transposon CTnDOT. J Bacteriol 2005;187:2673–80.
-
(2005)
J Bacteriol
, vol.187
, pp. 2673-2680
-
-
Wang, Y1
Rotman, ER2
Shoemaker, NB3
-
255
-
-
1942540021
-
Regulation of a Bacteroides operon that controls excision and transfer of the conjugative transposon CTnDOT
-
Wang Y, Shoemaker NB, Salyers AA. Regulation of a Bacteroides operon that controls excision and transfer of the conjugative transposon CTnDOT. J Bacteriol 2004;186:2548–57.
-
(2004)
J Bacteriol
, vol.186
, pp. 2548-2557
-
-
Wang, Y1
Shoemaker, NB2
Salyers, AA.3
-
256
-
-
84868324252
-
The small RNA RteR inhibits transfer of the Bacteroides conjugative transposon CTnDOT
-
Waters JL, Salyers AA. The small RNA RteR inhibits transfer of the Bacteroides conjugative transposon CTnDOT. J Bacteriol 2012;194:5228–36.
-
(2012)
J Bacteriol
, vol.194
, pp. 5228-5236
-
-
Waters, JL1
Salyers, AA.2
-
257
-
-
84891609711
-
Regulation of CTnDOT conjugative transfer is a complex and highly coordinated series of events
-
Waters JL, Salyers AA. Regulation of CTnDOT conjugative transfer is a complex and highly coordinated series of events. MBio 2013;4:e00569–13.
-
(2013)
MBio
, vol.4
, pp. e00569-13
-
-
Waters, JL1
Salyers, AA.2
-
258
-
-
84971432580
-
Species diversity of environmental GIM-1-producing bacteria collected during a long-term outbreak
-
Wendel AF, Ressina S, Kolbe-Busch S et al. Species diversity of environmental GIM-1-producing bacteria collected during a long-term outbreak. Appl Environ Microb 2016;82:3605–10.
-
(2016)
Appl Environ Microb
, vol.82
, pp. 3605-3610
-
-
Wendel, AF1
Ressina, S2
Kolbe-Busch, S3
-
259
-
-
0036302626
-
Characterization of genes involved in modulation of conjugal transfer of the Bacteroides conjugative transposon CTnDOT
-
Whittle G, Shoemaker NB, Salyers AA. Characterization of genes involved in modulation of conjugal transfer of the Bacteroides conjugative transposon CTnDOT. J Bacteriol 2002;184:3839–47.
-
(2002)
J Bacteriol
, vol.184
, pp. 3839-3847
-
-
Whittle, G1
Shoemaker, NB2
Salyers, AA.3
-
260
-
-
0026338873
-
Restriction and modification systems
-
Wilson GG, Murray NE. Restriction and modification systems. Annu Rev Genet 1991;25:585–627.
-
(1991)
Annu Rev Genet
, vol.25
, pp. 585-627
-
-
Wilson, GG1
Murray, NE.2
-
261
-
-
77955299185
-
CTnDOT integrase interactions with attachment site DNA and control of directionality of the recombination reaction
-
Wood MM, Dichiara JM, Yoneji S et al. CTnDOT integrase interactions with attachment site DNA and control of directionality of the recombination reaction. J Bacteriol 2010;192: 3934–43.
-
(2010)
J Bacteriol
, vol.192
, pp. 3934-3943
-
-
Wood, MM1
Dichiara, JM2
Yoneji, S3
-
262
-
-
74249093709
-
Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs
-
Wozniak RA, Fouts DE, Spagnoletti M et al. Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet 2009;5:e1000786.
-
(2009)
PLoS Genet
, vol.5
, pp. e1000786
-
-
Wozniak, RA1
Fouts, DE2
Spagnoletti, M3
-
263
-
-
63449105641
-
A toxin-antitoxin system promotes the maintenance of an integrative conjugative element
-
Wozniak RA, Waldor MK. A toxin-antitoxin system promotes the maintenance of an integrative conjugative element. PLoS Genet 2009;5:e1000439.
-
(2009)
PLoS Genet
, vol.5
, pp. e1000439
-
-
Wozniak, RA1
Waldor, MK.2
-
264
-
-
77954761569
-
Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow
-
Wozniak RA, Waldor MK. Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow. Nat Rev Microbiol 2010;8:552–63.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 552-563
-
-
Wozniak, RA1
Waldor, MK.2
-
265
-
-
84996844220
-
Autonomous replication of the conjugative transposon Tn916
-
Wright LD, Grossman AD. Autonomous replication of the conjugative transposon Tn916. J Bacteriol 2016;198:3355–66.
-
(2016)
J Bacteriol
, vol.198
, pp. 3355-3366
-
-
Wright, LD1
Grossman, AD.2
-
266
-
-
84946606580
-
Identification of a single strand origin of replication in the Integrative and Conjugative Element ICEBs1 of Bacillus subtilis
-
Wright LD, Johnson CM, Grossman AD. Identification of a single strand origin of replication in the Integrative and Conjugative Element ICEBs1 of Bacillus subtilis. PLoS Genet 2015;11:e1005556.
-
(2015)
PLoS Genet
, vol.11
, pp. e1005556
-
-
Wright, LD1
Johnson, CM2
Grossman, AD.3
-
267
-
-
77952536835
-
Decision making at a subcellular level determines the outcome of bacteriophage infection
-
Zeng L, Skinner SO, Zong C et al. Decision making at a subcellular level determines the outcome of bacteriophage infection. Cell 2010;141:682–91.
-
(2010)
Cell
, vol.141
, pp. 682-691
-
-
Zeng, L1
Skinner, SO2
Zong, C3
-
268
-
-
84876800205
-
CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes
-
Zhang Q, Rho M, Tang H et al. CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes. Genome Biol 2013;14:R40.
-
(2013)
Genome Biol
, vol.14
, pp. R40
-
-
Zhang, Q1
Rho, M2
Tang, H3
-
269
-
-
34250356064
-
Genome evolution in major Escherichia coli O157:H7 lineages
-
Zhang Y, Laing C, Steele M et al. Genome evolution in major Escherichia coli O157:H7 lineages. BMC Genomics 2007; 8:121.
-
(2007)
BMC Genomics
, vol.8
, pp. 121
-
-
Zhang, Y1
Laing, C2
Steele, M3
|