Erratum: H-NS mediates the silencing of laterally acquired genes in bacteria (PLos Pathogens 2 (8) Doi: 10.1371/journal.ppat.0020081);H-NS mediates the silencing of laterally acquired genes in bacteria

PLoS Pathogens

Volumn 2, Issue 8, 2006, Pages 0746-0752

  Lucchini, Sacha ^a   Rowley, Gary ^a   Goldberg, Martin D ^a,c   Hurd, Douglas ^b   Harrison, Marcus ^b   Hinton, Jay C D ^a  

^a INSTITUTE OF FOOD RESEARCH   (United Kingdom)

^b OXFORD GENE TECHNOLOGY   (United Kingdom)

^c UNIVERSITY OF BIRMINGHAM   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE LIKE NUCLEOID STRUCTURING PROTEIN; BACTERIAL DNA; BACTERIAL PROTEIN; DNA BINDING PROTEIN; DNA DIRECTED RNA POLYMERASE; H NS PROTEIN, BACTERIA; H-NS PROTEIN, BACTERIA;

ARTICLE; BACTERIAL CHROMOSOME; BINDING SITE; CHROMATIN IMMUNOPRECIPITATION; DNA BINDING; GENE EXPRESSION; GENE SILENCING; HORIZONTAL GENE TRANSFER; NONHUMAN; NUCLEOTIDE SEQUENCE; SALMONELLA ENTERICA; SEROTYPE; EVOLUTION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PATHOGENICITY;

BACTERIA (MICROORGANISMS); ENTEROBACTERIACEAE; SALMONELLA; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM;

BACTERIAL PROTEINS; BINDING SITES; DNA, BACTERIAL; DNA-BINDING PROTEINS; DNA-DIRECTED RNA POLYMERASES; EVOLUTION; GENE EXPRESSION REGULATION, BACTERIAL; GENE SILENCING; GENE TRANSFER, HORIZONTAL; SALMONELLA ENTERICA;

EID: 33748055114     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.0030038     Document Type: Erratum

References (37)

1. Tendeng C, Bertin PN (2003) H-NS in Gram-negative bacteria: A family of multifaceted proteins. Trends Microbiol 11: 511-518.
2. Ono S, Goldberg MD, Olsson T, Esposito D, Hinton JCD, et al. (2005) H-NS is a part of a thermally controlled mechanism for bacterial gene regulation. Biochem J 391: 203-213.
3. Dorman CJ (2004) H-NS: A universal regulator for a dynamic genome. Nat Rev Microbiol 2: 391-400.
4. Hommais F, Krin E, Laurent-Winter C, Soutourina O, Malpertuy A, et al. (2001) Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS. Mol Microbiol 40: 20-36.
5. Rimsky S (2004) Structure of the histone-like protein H-NS and its role in regulation and genome superstructure. Curr Opin Microbiol 7: 109-114.
6. Esposito D, Petrovic A, Harris R, Ono S, Eccleston JF, et al. (2002) H-NS oligomerization domain structure reveals the mechanism for high order self-association of the intact protein. J Mol Biol 324: 841-850.
7. Owen-Hughes TA, Pavitt GD, Santos DS, Sidebotham JM, Hulton CSJ, et al. (1992) The chromatin-associated protein H-NS interacts with curved DNA to influence DNA topology and gene-expression. Cell 71: 255-265.
8. Yamada H, Yoshida T, Tanaka K, Sasakawa C, Mizuno T (1991) Molecular analysis of the Escherichia coli H-NS gene encoding a DNA-binding protein, which preferentially recognizes curved DNA sequences. Mol Gen Genet 230: 332-336.
9. Jordi B, Fielder AE, Burns CM, Hinton JCD, Dover N, et al. (1997) DNA binding is not sufficient for H-NS-mediated repression of proU expression. J Biol Chem 272: 12083-12090.
10. Rimsky S, Zuber F, Buckle M, Buc H (2001) A molecular mechanism for the repression of transcription by the H-NS protein. Mol Microbiol 42: 1311-1323.
11. Tupper AE, Owen-Hughes TA, Ussery DW, Santos DS, Ferguson DJP, et al. (1994) The chromatin-associated protein H-NS alters DNA topology in vitro. EMBO J 13: 258-268.
12. Chen CC, Chou MY, Huang CH, Majumder A, Wu HY (2005) A cis-spreading nucleoprotein filament is responsible for the gene silencing activity found in the promoter relay mechanism. J Biol Chem 280: 5101-5112.
13. Badaut C, Williams R, Arluison V, Bouffartigues E, Robert B, et al. (2002) The degree of oligomerization of the H-NS nucleoid structuring protein is related to specific binding to DNA. J Biol Chem 277: 41657-41666.
14. Dorman CJ, Deighan P (2003) Regulation of gene expression by histone-like proteins in bacteria. Curr Opin Genet Dev 13: 179-184.
15. Pedersen AG, Jensen LJ, Brunak S, Staerfeldt HH, Ussery DW (2000) A DNA structural atlas for Escherichia coli. J Mol Biol 299: 907-930.
16. Jauregui R, Abreu-Goodger C, Moreno-Hagelsieb G, Collado-Vides J, Merino E (2003) Conservation of DNA curvature signals in regulatory regions of prokaryotic genes. Nucleic Acids Res 31: 6770-6777.
17. Perez-Martin J, Rojo F, De Lorenzo V (1994) Promoters responsive to DNA bending-A common theme in prokaryotic gene expression. Microbiol Rev 58: 268-290.
18. Grainger DC, Overton TW, Reppas N, Wade JT, Tamai E, et al. (2004) Genomic studies with Escherichia coli MelR protein: Applications of chromatin immunoprecipitation and microarrays. J Bacteriol 186: 6938-6943.
19. Ren B, Robert F, Wyrick JJ, Aparicio O, Jennings EG, et al. (2000) Genome-wide location and function of DNA binding proteins. Science 290: 2306-2309.
20. Azam TA, Iwata A, Nishimura A, Ueda S, Ishihama A (1999) Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J Bacteriol 181: 6361-6370.
21. Hinton JCD, Santos DS, Seira. A, Hulton CSJ, Pavitt GD, et al. (1992) Expression and mutational analysis of the nucleoid-associated protein H-NS of Salmonella Typhimurium. Mol Microbiol 6: 2327-2337.
22. Shin M, Song MY, Rhee JH, Hong YJ, Kim YJ, et al. (2005) DNA looping-mediated repression by histone-like protein H-NS: Specific requirement of E sigma (70) as a cofactor for looping. Genes Dev 19: 2388-2398.
23. Dame RT, Wyman C, Wurm R, Wagner R, Goosen N (2002) Structural basis for H-NS-mediated trapping of RNA polymerase in the open initiation complex at the rrnB P1. J Biol Chem 277: 2146-2150.
24. Lawrence JG, Ochman H (1997) Amelioration of bacterial genomes: Rates of change and exchange. J Mol Evolution 44: 383-397.
25. Garcia-Vallve S, Guzman E, Montero MA, Romeu A (2003) HGT-DB: A database of putative horizontally transferred genes in prokaryotic complete genomes. Nucleic Acids Res 31: 187-189.
26. Will WR, Lu J, Frost LS (2004) The role of H-NS in silencing F transfer gene expression during entry into stationary phase. Mol Microbiol 54: 769-782.
27. Coombes BK, Wickham ME, Lowden MJ, Brown NF, Finlay BB (2005) Negative regulation of Salmonella pathogenicity island 2 is required for contextual control of virulence during typhoid. Proc Natl Acad Sci U S A 102: 17460-17465.
28. Navarre WW, Porwollik S, Wang Y, McClelland M, Rosen H, et al. (2006) Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science 14: 236-238.
29. Wilmes-Riesenberg MR, Foster JW, Curtiss R 3rd (1997) An altered rpoS allele contributes to the avirulence of Salmonella typhimurium LT2. Infect Immun 65: 203-210.
30. Lee IS, Lin J, Hall HK, Bearson B, Foster JW (1995) The stationary-phase sigma factor sigma S (RpoS) is required for a sustained acid tolerance response in virulent Salmonella typhimurium. Mol Microbiol 17: 155-167.
31. Bustamante VH, Santana FJ, Calva E, Puente JL (2001) Transcriptional regulation of type III secretion genes in enteropathogenic Escherichia coli: Ler antagonizes H-NS-dependent repression. Mol Microbiol 39: 664-678.
32. Lawrence JG (2005) Common themes in the genome strategies of pathogens. Curr Opin Genet Dev 15: 584-588.
33. Sambrook J, Russell DW (2001) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor (New York): Cold Spring Harbor Laboratory Press. 999 p.
34. Datsenko KA, Wanner BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97: 6640-6645.
35. Bochner BR (1984) Curing bacterial cells of lysogenic viruses by using UCB indicator plates. Biotechniques 2: 234-240.
36. Sonnenfield JM, Burns CM, Higgins CF, Hinton JCD (2001) The nucleoid-associated protein StpA binds curved DNA, has a greater DNA-binding affinity than H-NS and is present in significant levels in hns mutants. Biochimie 83: 243-249.
37. Grainger DC, Hurd D, Harrison M, Holdstock J, Busby SJW (2005) Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome. Proc Natl Acad Sci U S A 102: 17693-17698.