-
1
-
-
0030982862
-
The origin of transfer (oriT) of the enterococcal, pheromone-responding, cytolysin plasmid pAD1 is located within the repA determinant
-
An, F.Y., and Clewell, D.B. (1997) The origin of transfer (oriT) of the enterococcal, pheromone-responding, cytolysin plasmid pAD1 is located within the repA determinant. Plasmid 37: 87-94.
-
(1997)
Plasmid
, vol.37
, pp. 87-94
-
-
An, F.Y.1
Clewell, D.B.2
-
2
-
-
24644481914
-
Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response
-
Auchtung, J.M., Lee, C.A., Monson, R.E., Lehman, A.P., and Grossman, A.D. (2005) Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response. Proc Natl Acad Sci USA 102: 12554-12559.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12554-12559
-
-
Auchtung, J.M.1
Lee, C.A.2
Monson, R.E.3
Lehman, A.P.4
Grossman, A.D.5
-
3
-
-
0030590233
-
Plasmid R6K contains two functional oriTs which can assemble simultaneously in relaxosomes in vivo
-
Avila, P., Nunez, B., and de la Cruz, F. (1996) Plasmid R6K contains two functional oriTs which can assemble simultaneously in relaxosomes in vivo. J Mol Biol 261: 135-143.
-
(1996)
J Mol Biol
, vol.261
, pp. 135-143
-
-
Avila, P.1
Nunez, B.2
de la Cruz, F.3
-
4
-
-
0036062306
-
Genomic and functional analyses of SXT, an integrating antibiotic resistance gene transfer element derived from Vibrio cholerae
-
Beaber, J.W., Hochhut, B., and Waldor, M.K. (2002) Genomic and functional analyses of SXT, an integrating antibiotic resistance gene transfer element derived from Vibrio cholerae. J Bacteriol 184: 4259-4269.
-
(2002)
J Bacteriol
, vol.184
, pp. 4259-4269
-
-
Beaber, J.W.1
Hochhut, B.2
Waldor, M.K.3
-
5
-
-
0345827436
-
SOS response promotes horizontal dissemination of antibiotic resistance genes
-
Beaber, J.W., Hochhut, B., and Waldor, M.K. (2004) SOS response promotes horizontal dissemination of antibiotic resistance genes. Nature 427: 72-74.
-
(2004)
Nature
, vol.427
, pp. 72-74
-
-
Beaber, J.W.1
Hochhut, B.2
Waldor, M.K.3
-
6
-
-
0023117639
-
Use of site-specific recombination as a probe of DNA structure and metabolism in vivo
-
Bliska, J.B., and Cozzarelli, N.R. (1987) Use of site-specific recombination as a probe of DNA structure and metabolism in vivo. J Mol Biol 194: 205-218.
-
(1987)
J Mol Biol
, vol.194
, pp. 205-218
-
-
Bliska, J.B.1
Cozzarelli, N.R.2
-
7
-
-
0041387546
-
Control of SXT integration and excision
-
Burrus, V., and Waldor, M.K. (2003) Control of SXT integration and excision. J Bacteriol 185: 5045-5054.
-
(2003)
J Bacteriol
, vol.185
, pp. 5045-5054
-
-
Burrus, V.1
Waldor, M.K.2
-
8
-
-
48149104240
-
Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements
-
Ceccarelli, D., Daccord, A., Rene, M., and Burrus, V. (2008) Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements. J Bacteriol 190: 5328-5338.
-
(2008)
J Bacteriol
, vol.190
, pp. 5328-5338
-
-
Ceccarelli, D.1
Daccord, A.2
Rene, M.3
Burrus, V.4
-
9
-
-
21444457864
-
A Tn7-based broad-range bacterial cloning and expression system
-
Choi, K.H., Gaynor, J.B., White, K.G., Lopez, C., Bosio, C.M., Karkhoff-Schweizer, R.R., and Schweizer, H.P. (2005) A Tn7-based broad-range bacterial cloning and expression system. Nat Methods 2: 443-448.
-
(2005)
Nat Methods
, vol.2
, pp. 443-448
-
-
Choi, K.H.1
Gaynor, J.B.2
White, K.G.3
Lopez, C.4
Bosio, C.M.5
Karkhoff-Schweizer, R.R.6
Schweizer, H.P.7
-
10
-
-
0032983154
-
The topological mechanism of phage lambda integrase
-
Crisona, N.J., Weinberg, R.L., Peter, B.J., Sumners, D.W., and Cozzarelli, N.R. (1999) The topological mechanism of phage lambda integrase. J Mol Biol 289: 747-775.
-
(1999)
J Mol Biol
, vol.289
, pp. 747-775
-
-
Crisona, N.J.1
Weinberg, R.L.2
Peter, B.J.3
Sumners, D.W.4
Cozzarelli, N.R.5
-
11
-
-
71549146932
-
Conjugative DNA metabolism in Gram-negative bacteria
-
de la Cruz, F., Frost, L.S., Meyer, R.J., and Zechner, E.L. (2010) Conjugative DNA metabolism in Gram-negative bacteria. FEMS Microbiol Rev 34: 18-40.
-
(2010)
FEMS Microbiol Rev
, vol.34
, pp. 18-40
-
-
de la Cruz, F.1
Frost, L.S.2
Meyer, R.J.3
Zechner, E.L.4
-
12
-
-
0033781814
-
Enterococcus faecalis conjugative plasmid pAM373: complete nucleotide sequence and genetic analyses of sex pheromone response
-
De Boever, E.H., Clewell, D.B., and Fraser, C.M. (2000) Enterococcus faecalis conjugative plasmid pAM373: complete nucleotide sequence and genetic analyses of sex pheromone response. Mol Microbiol 37: 1327-1341.
-
(2000)
Mol Microbiol
, vol.37
, pp. 1327-1341
-
-
De Boever, E.H.1
Clewell, D.B.2
Fraser, C.M.3
-
13
-
-
2442449227
-
Genomic islands in pathogenic and environmental microorganisms
-
Dobrindt, U., Hochhut, B., Hentschel, U., and Hacker, J. (2004) Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol 2: 414-424.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 414-424
-
-
Dobrindt, U.1
Hochhut, B.2
Hentschel, U.3
Hacker, J.4
-
14
-
-
0036065207
-
Transfer origins in the conjugative Enterococcus faecalis plasmids pAD1 and pAM373: identification of the pAD1 nic site, a specific relaxase and a possible TraG-like protein
-
Francia, M.V., and Clewell, D.B. (2002) Transfer origins in the conjugative Enterococcus faecalis plasmids pAD1 and pAM373: identification of the pAD1 nic site, a specific relaxase and a possible TraG-like protein. Mol Microbiol 45: 375-395.
-
(2002)
Mol Microbiol
, vol.45
, pp. 375-395
-
-
Francia, M.V.1
Clewell, D.B.2
-
15
-
-
0034781272
-
Completion of the nucleotide sequence of the Enterococcus faecalis conjugative virulence plasmid pAD1 and identification of a second transfer origin
-
Francia, M.V., Haas, W., Wirth, R., Samberger, E., Muscholl-Silberhorn, A., Gilmore, M.S., etal. (2001) Completion of the nucleotide sequence of the Enterococcus faecalis conjugative virulence plasmid pAD1 and identification of a second transfer origin. Plasmid 46: 117-127.
-
(2001)
Plasmid
, vol.46
, pp. 117-127
-
-
Francia, M.V.1
Haas, W.2
Wirth, R.3
Samberger, E.4
Muscholl-Silberhorn, A.5
Gilmore, M.S.6
-
16
-
-
70349277187
-
The structural biology of type IV secretion systems
-
Fronzes, R., Christie, P.J., and Waksman, G. (2009) The structural biology of type IV secretion systems. Nat Rev Microbiol 7: 703-714.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 703-714
-
-
Fronzes, R.1
Christie, P.J.2
Waksman, G.3
-
17
-
-
33644745555
-
The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties
-
Gaillard, M., Vallaeys, T., Vorholter, F.J., Minoia, M., Werlen, C., Sentchilo, V., etal. (2006) The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties. J Bacteriol 188: 1999-2013.
-
(2006)
J Bacteriol
, vol.188
, pp. 1999-2013
-
-
Gaillard, M.1
Vallaeys, T.2
Vorholter, F.J.3
Minoia, M.4
Werlen, C.5
Sentchilo, V.6
-
18
-
-
44349111947
-
Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1
-
Gaillard, M., Pernet, N., Vogne, C., Hagenbuchle, O., and van der Meer, J.R. (2008) Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. Proc Natl Acad Sci USA 105: 7058-7063.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 7058-7063
-
-
Gaillard, M.1
Pernet, N.2
Vogne, C.3
Hagenbuchle, O.4
van der Meer, J.R.5
-
19
-
-
77952600379
-
Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13
-
Gaillard, M., Pradervand, N., Minoia, M., Sentchilo, V., Johnson, D.R., and van der Meer, J.R. (2010) Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13. BMC Microbiol 10: 153.
-
(2010)
BMC Microbiol
, vol.10
, pp. 153
-
-
Gaillard, M.1
Pradervand, N.2
Minoia, M.3
Sentchilo, V.4
Johnson, D.R.5
van der Meer, J.R.6
-
20
-
-
64349087867
-
The diversity of conjugative relaxases and its application in plasmid classification
-
Garcillan-Barcia, M.P., Francia, M.V., and de la Cruz, F. (2009) The diversity of conjugative relaxases and its application in plasmid classification. FEMS Microbiol Rev 33: 657-687.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 657-687
-
-
Garcillan-Barcia, M.P.1
Francia, M.V.2
de la Cruz, F.3
-
21
-
-
0004217184
-
Manual of Methods for General Bacteriology
-
Washington, DC: American Society for Microbiology.
-
Gerhardt, P., Murray, R.G.E., Costilow, R.N., Nester, E.W., Wood, W.A., Kreig, N.R., and Briggs Phillips, G. (1981) Manual of Methods for General Bacteriology. Washington, DC: American Society for Microbiology.
-
(1981)
-
-
Gerhardt, P.1
Murray, R.G.E.2
Costilow, R.N.3
Nester, E.W.4
Wood, W.A.5
Kreig, N.R.6
Briggs Phillips, G.7
-
22
-
-
0344628800
-
Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC
-
Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Perez-Luque, R., Gomis-Ruth, F.X., etal. (2003) Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC. Nat Struct Biol 10: 1002-1010.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 1002-1010
-
-
Guasch, A.1
Lucas, M.2
Moncalian, G.3
Cabezas, M.4
Perez-Luque, R.5
Gomis-Ruth, F.X.6
-
23
-
-
0033621572
-
Small, stable shuttle vectors based on the minimal pVS1 replicon for use in gram-negative, plant-associated bacteria
-
Heeb, S., Itoh, Y., Nishijyo, T., Schnider, U., Keel, C., Wade, J., etal. (2000) Small, stable shuttle vectors based on the minimal pVS1 replicon for use in gram-negative, plant-associated bacteria. Mol Plant Microbe Interact 13: 232-237.
-
(2000)
Mol Plant Microbe Interact
, vol.13
, pp. 232-237
-
-
Heeb, S.1
Itoh, Y.2
Nishijyo, T.3
Schnider, U.4
Keel, C.5
Wade, J.6
-
24
-
-
0032575051
-
A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants
-
Hoang, T.T., Karkhoff-Schweizer, R.R., Kutchma, A.J., and Schweizer, H.P. (1998) A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants. Gene 212: 77-86.
-
(1998)
Gene
, vol.212
, pp. 77-86
-
-
Hoang, T.T.1
Karkhoff-Schweizer, R.R.2
Kutchma, A.J.3
Schweizer, H.P.4
-
25
-
-
0028839175
-
A functional origin of transfer (oriT) on the conjugative transposon Tn916
-
Jaworski, D.D., and Clewell, D.B. (1995) A functional origin of transfer (oriT) on the conjugative transposon Tn916. J Bacteriol 177: 6644-6651.
-
(1995)
J Bacteriol
, vol.177
, pp. 6644-6651
-
-
Jaworski, D.D.1
Clewell, D.B.2
-
26
-
-
33846643066
-
Novel type IV secretion system involved in propagation of genomic islands
-
Juhas, M., Crook, D.W., Dimopoulou, I.D., Lunter, G., Harding, R.M., Ferguson, D.J., and Hood, D.W. (2007) Novel type IV secretion system involved in propagation of genomic islands. J Bacteriol 189: 761-771.
-
(2007)
J Bacteriol
, vol.189
, pp. 761-771
-
-
Juhas, M.1
Crook, D.W.2
Dimopoulou, I.D.3
Lunter, G.4
Harding, R.M.5
Ferguson, D.J.6
Hood, D.W.7
-
27
-
-
55749108735
-
Type IV secretion systems: tools of bacterial horizontal gene transfer and virulence
-
Juhas, M., Crook, D.W., and Hood, D.W. (2008) Type IV secretion systems: tools of bacterial horizontal gene transfer and virulence. Cell Microbiol 10: 2377-2386.
-
(2008)
Cell Microbiol
, vol.10
, pp. 2377-2386
-
-
Juhas, M.1
Crook, D.W.2
Hood, D.W.3
-
28
-
-
60149088444
-
Genomic islands: tools of bacterial horizontal gene transfer and evolution
-
Juhas, M., van der Meer, J.R., Gaillard, M., Harding, R.M., Hood, D.W., and Crook, D.W. (2009) Genomic islands: tools of bacterial horizontal gene transfer and evolution. FEMS Microbiol Rev 33: 376-393.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 376-393
-
-
Juhas, M.1
van der Meer, J.R.2
Gaillard, M.3
Harding, R.M.4
Hood, D.W.5
Crook, D.W.6
-
29
-
-
0035004274
-
A panel of Tn7-based vectors for insertion of the gfp marker gene or for delivery of cloned DNA into Gram-negative bacteria at a neutral chromosomal site
-
Koch, B., Jensen, L.E., and Nybroe, O. (2001) A panel of Tn7-based vectors for insertion of the gfp marker gene or for delivery of cloned DNA into Gram-negative bacteria at a neutral chromosomal site. J Microbiol Methods 45: 187-195.
-
(2001)
J Microbiol Methods
, vol.45
, pp. 187-195
-
-
Koch, B.1
Jensen, L.E.2
Nybroe, O.3
-
30
-
-
0028793123
-
Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes
-
Kovach, M.E., Elzer, P.H., Hill, D.S., Robertson, G.T., Farris, M.A., Roop, R.M., 2nd, and Peterson K.M. (1995) Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 166: 175-176.
-
(1995)
Gene
, vol.166
, pp. 175-176
-
-
Kovach, M.E.1
Elzer, P.H.2
Hill, D.S.3
Robertson, G.T.4
Farris, M.A.5
Roop 2nd, R.M.6
Peterson, K.M.7
-
31
-
-
0028896922
-
Site-specific deletions of chromosomally located DNA segments with the multimer resolution system of broad-host-range plasmid RP4
-
Kristensen, C.S., Eberl, L., Sanchez-Romero, J.M., Givskov, M., Molin, S., and De Lorenzo, V. (1995) Site-specific deletions of chromosomally located DNA segments with the multimer resolution system of broad-host-range plasmid RP4. J Bacteriol 177: 52-58.
-
(1995)
J Bacteriol
, vol.177
, pp. 52-58
-
-
Kristensen, C.S.1
Eberl, L.2
Sanchez-Romero, J.M.3
Givskov, M.4
Molin, S.5
De Lorenzo, V.6
-
32
-
-
84926957010
-
Prokaryotic Diversity: Mechanisms and Significance
-
In Logan, N.A., Lappin-Scott, H.M., and Oyston, P.C.F. (eds). Cambridge, UK: Cambridge University Press.
-
Lacour, S., Gaillard, M., and van der Meer, J.R. (2006) Genomic islands and the evolution of catabolic pathways. In Prokaryotic Diversity: Mechanisms and Significance. Logan, N.A., Lappin-Scott, H.M., and Oyston, P.C.F. (eds). Cambridge, UK: Cambridge University Press, pp. 255-274.
-
(2006)
Genomic islands and the evolution of catabolic pathways
, pp. 255-274
-
-
Lacour, S.1
Gaillard, M.2
van der Meer, J.R.3
-
33
-
-
0036889019
-
Gene islands integrated into tRNA(Gly) genes confer genome diversity on a Pseudomonas aeruginosa clone
-
Larbig, K.D., Christmann, A., Johann, A., Klockgether, J., Hartsch, T., Merkl, R., etal. (2002) Gene islands integrated into tRNA(Gly) genes confer genome diversity on a Pseudomonas aeruginosa clone. J Bacteriol 184: 6665-6680.
-
(2002)
J Bacteriol
, vol.184
, pp. 6665-6680
-
-
Larbig, K.D.1
Christmann, A.2
Johann, A.3
Klockgether, J.4
Hartsch, T.5
Merkl, R.6
-
34
-
-
7644232342
-
Plasmid Biology
-
In Funnel, B.E., and Phillips, G.J. (eds). Washington, DC: ASM Press.
-
Lawley, T., and Wilkins, B.M. (2004) Bacterial conjugation in gram-negative bacteria. In Plasmid Biology. Funnel, B.E., and Phillips, G.J. (eds). Washington, DC: ASM Press, pp. 203-226.
-
(2004)
Bacterial conjugation in gram-negative bacteria
, pp. 203-226
-
-
Lawley, T.1
Wilkins, B.M.2
-
35
-
-
35048903315
-
Identification of the origin of transfer (oriT) and DNA relaxase required for conjugation of the integrative and conjugative element ICEBs1 of Bacillus subtilis
-
Lee, C.A., and Grossman, A.D. (2007) Identification of the origin of transfer (oriT) and DNA relaxase required for conjugation of the integrative and conjugative element ICEBs1 of Bacillus subtilis. J Bacteriol 189: 7254-7261.
-
(2007)
J Bacteriol
, vol.189
, pp. 7254-7261
-
-
Lee, C.A.1
Grossman, A.D.2
-
36
-
-
36549062382
-
Identification and characterization of int (integrase), xis (excisionase) and chromosomal attachment sites of the integrative and conjugative element ICEBs1 of Bacillus subtilis
-
Lee, C.A., Auchtung, J.M., Monson, R.E., and Grossman, A.D. (2007) Identification and characterization of int (integrase), xis (excisionase) and chromosomal attachment sites of the integrative and conjugative element ICEBs1 of Bacillus subtilis. Mol Microbiol 66: 1356-1369.
-
(2007)
Mol Microbiol
, vol.66
, pp. 1356-1369
-
-
Lee, C.A.1
Auchtung, J.M.2
Monson, R.E.3
Grossman, A.D.4
-
37
-
-
2942628870
-
Excision of the high-pathogenicity island of Yersinia pseudotuberculosis requires the combined actions of its cognate integrase and Hef, a new recombination directionality factor
-
Lesic, B., Bach, S., Ghigo, J.M., Dobrindt, U., Hacker, J., and Carniel, E. (2004) Excision of the high-pathogenicity island of Yersinia pseudotuberculosis requires the combined actions of its cognate integrase and Hef, a new recombination directionality factor. Mol Microbiol 52: 1337-1348.
-
(2004)
Mol Microbiol
, vol.52
, pp. 1337-1348
-
-
Lesic, B.1
Bach, S.2
Ghigo, J.M.3
Dobrindt, U.4
Hacker, J.5
Carniel, E.6
-
38
-
-
0024424430
-
Survival of Pseudomonas putida UWC1 containing cloned catabolic genes in a model activated-sludge unit
-
McClure, N.C., Weightman, A.J., and Fry, J.C. (1989) Survival of Pseudomonas putida UWC1 containing cloned catabolic genes in a model activated-sludge unit. Appl Environ Microbiol 55: 2627-2634.
-
(1989)
Appl Environ Microbiol
, vol.55
, pp. 2627-2634
-
-
McClure, N.C.1
Weightman, A.J.2
Fry, J.C.3
-
39
-
-
34848821714
-
CTnDOT integrase performs ordered homology-dependent and homology-independent strand exchanges
-
Malanowska, K., Yoneji, S., Salyers, A.A., and Gardner, J.F. (2007) CTnDOT integrase performs ordered homology-dependent and homology-independent strand exchanges. Nucleic Acids Res 35: 5861-5873.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5861-5873
-
-
Malanowska, K.1
Yoneji, S.2
Salyers, A.A.3
Gardner, J.F.4
-
40
-
-
58549105920
-
Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas
-
Minoia, M., Gaillard, M., Reinhard, F., Stojanov, M., Sentchilo, V., and van der Meer, J.R. (2008) Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas. Proc Natl Acad Sci USA 105: 20792-20797.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 20792-20797
-
-
Minoia, M.1
Gaillard, M.2
Reinhard, F.3
Stojanov, M.4
Sentchilo, V.5
van der Meer, J.R.6
-
41
-
-
52649135569
-
Characterization of the traD operon of naphthalene-catabolic plasmid NAH7: a host-range modifier in conjugative transfer
-
Miyazaki, R., Ohtsubo, Y., Nagata, Y., and Tsuda, M. (2008) Characterization of the traD operon of naphthalene-catabolic plasmid NAH7: a host-range modifier in conjugative transfer. J Bacteriol 190: 6281-6289.
-
(2008)
J Bacteriol
, vol.190
, pp. 6281-6289
-
-
Miyazaki, R.1
Ohtsubo, Y.2
Nagata, Y.3
Tsuda, M.4
-
42
-
-
9244235517
-
Transferable antibiotic resistance elements in Haemophilus influenzae share a common evolutionary origin with a diverse family of syntenic genomic islands
-
Mohd-Zain, Z., Turner, S.L., Cerdeno-Tarraga, A.M., Lilley, A.K., Inzana, T.J., Duncan, A.J., etal. (2004) Transferable antibiotic resistance elements in Haemophilus influenzae share a common evolutionary origin with a diverse family of syntenic genomic islands. J Bacteriol 186: 8114-8122.
-
(2004)
J Bacteriol
, vol.186
, pp. 8114-8122
-
-
Mohd-Zain, Z.1
Turner, S.L.2
Cerdeno-Tarraga, A.M.3
Lilley, A.K.4
Inzana, T.J.5
Duncan, A.J.6
-
43
-
-
52649124812
-
GenomeMatcher: a graphical user interface for DNA sequence comparison
-
Ohtsubo, Y., Ikeda-Ohtsubo, W., Nagata, Y., and Tsuda, M. (2008) GenomeMatcher: a graphical user interface for DNA sequence comparison. BMC Bioinformatics 9: 376.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 376
-
-
Ohtsubo, Y.1
Ikeda-Ohtsubo, W.2
Nagata, Y.3
Tsuda, M.4
-
44
-
-
0345504146
-
Markerless gene replacement in Escherichia coli stimulated by a double-strand break in the chromosome
-
Posfai, G., Kolisnychenko, V., Bereczki, Z., and Blattner, F.R. (1999) Markerless gene replacement in Escherichia coli stimulated by a double-strand break in the chromosome. Nucleic Acids Res 27: 4409-4415.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4409-4415
-
-
Posfai, G.1
Kolisnychenko, V.2
Bereczki, Z.3
Blattner, F.R.4
-
45
-
-
33845924185
-
Interstrain transfer of the large pathogenicity island (PAPI-1) of Pseudomonas aeruginosa
-
Qiu, X., Gurkar, A.U., and Lory, S. (2006) Interstrain transfer of the large pathogenicity island (PAPI-1) of Pseudomonas aeruginosa. Proc Natl Acad Sci USA 103: 19830-19835.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 19830-19835
-
-
Qiu, X.1
Gurkar, A.U.2
Lory, S.3
-
46
-
-
33750015243
-
Excision and transfer of the Mesorhizobium loti R7A symbiosis island requires an integrase IntS, a novel recombination directionality factor RdfS, and a putative relaxase RlxS
-
Ramsay, J.P., Sullivan, J.T., Stuart, G.S., Lamont, I.L., and Ronson, C.W. (2006) Excision and transfer of the Mesorhizobium loti R7A symbiosis island requires an integrase IntS, a novel recombination directionality factor RdfS, and a putative relaxase RlxS. Mol Microbiol 62: 723-734.
-
(2006)
Mol Microbiol
, vol.62
, pp. 723-734
-
-
Ramsay, J.P.1
Sullivan, J.T.2
Stuart, G.S.3
Lamont, I.L.4
Ronson, C.W.5
-
47
-
-
70350170511
-
A LuxRI-family regulatory system controls excision and transfer of the Mesorhizobium loti strain R7A symbiosis island by activating expression of two conserved hypothetical genes
-
Ramsay, J.P., Sullivan, J.T., Jambari, N., Ortori, C.A., Heeb, S., Williams, P., etal. (2009) A LuxRI-family regulatory system controls excision and transfer of the Mesorhizobium loti strain R7A symbiosis island by activating expression of two conserved hypothetical genes. Mol Microbiol 73: 1141-1155.
-
(2009)
Mol Microbiol
, vol.73
, pp. 1141-1155
-
-
Ramsay, J.P.1
Sullivan, J.T.2
Jambari, N.3
Ortori, C.A.4
Heeb, S.5
Williams, P.6
-
48
-
-
0031751325
-
Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. Strain B13
-
Ravatn, R., Studer, S., Springael, D., Zehnder, A.J., and van der Meer, J.R. (1998a) Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. Strain B13. J Bacteriol 180: 4360-4369.
-
(1998)
J Bacteriol
, vol.180
, pp. 4360-4369
-
-
Ravatn, R.1
Studer, S.2
Springael, D.3
Zehnder, A.J.4
van der Meer, J.R.5
-
49
-
-
0031745938
-
Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms
-
Ravatn, R., Zehnder, A.J., and van der Meer, J.R. (1998b) Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms. Appl Environ Microbiol 64: 2126-2132.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2126-2132
-
-
Ravatn, R.1
Zehnder, A.J.2
van der Meer, J.R.3
-
50
-
-
0031740749
-
Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. Strain B13
-
Ravatn, R., Studer, S., Zehnder, A.J., and van der Meer, J.R. (1998c) Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. Strain B13. J Bacteriol 180: 5505-5514.
-
(1998)
J Bacteriol
, vol.180
, pp. 5505-5514
-
-
Ravatn, R.1
Studer, S.2
Zehnder, A.J.3
van der Meer, J.R.4
-
51
-
-
33644862811
-
The integrase of the conjugative transposon Tn916 directs strand- and sequence-specific cleavage of the origin of conjugal transfer, oriT, by the endonuclease Orf20
-
Rocco, J.M., and Churchward, G. (2006) The integrase of the conjugative transposon Tn916 directs strand- and sequence-specific cleavage of the origin of conjugal transfer, oriT, by the endonuclease Orf20. J Bacteriol 188: 2207-2213.
-
(2006)
J Bacteriol
, vol.188
, pp. 2207-2213
-
-
Rocco, J.M.1
Churchward, G.2
-
52
-
-
35748943171
-
A novel relaxase homologue is involved in chromosomal DNA processing for type IV secretion in Neisseria gonorrhoeae
-
Salgado-Pabon, W., Jain, S., Turner, N., van der Does, C., and Dillard, J.P. (2007) A novel relaxase homologue is involved in chromosomal DNA processing for type IV secretion in Neisseria gonorrhoeae. Mol Microbiol 66: 930-947.
-
(2007)
Mol Microbiol
, vol.66
, pp. 930-947
-
-
Salgado-Pabon, W.1
Jain, S.2
Turner, N.3
van der Does, C.4
Dillard, J.P.5
-
53
-
-
0004136246
-
Molecular Cloning: A Laboratory Manual
-
Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
-
Sambrook, J., and Russell, D.W. (2001) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
-
(2001)
-
-
Sambrook, J.1
Russell, D.W.2
-
54
-
-
1242297803
-
A novel integrative and conjugative element (ICE) of Escherichia coli: the putative progenitor of the Yersinia high-pathogenicity island
-
Schubert, S., Dufke, S., Sorsa, J., and Heesemann, J. (2004) A novel integrative and conjugative element (ICE) of Escherichia coli: the putative progenitor of the Yersinia high-pathogenicity island. Mol Microbiol 51: 837-848.
-
(2004)
Mol Microbiol
, vol.51
, pp. 837-848
-
-
Schubert, S.1
Dufke, S.2
Sorsa, J.3
Heesemann, J.4
-
55
-
-
0038782123
-
Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13
-
Sentchilo, V., Ravatn, R., Werlen, C., Zehnder, A.J., and van der Meer, J.R. (2003a) Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13. J Bacteriol 185: 4530-4538.
-
(2003)
J Bacteriol
, vol.185
, pp. 4530-4538
-
-
Sentchilo, V.1
Ravatn, R.2
Werlen, C.3
Zehnder, A.J.4
van der Meer, J.R.5
-
56
-
-
0038046819
-
Characterization of two alternative promoters for integrase expression in the clc genomic island of Pseudomonas sp. strain B13
-
Sentchilo, V., Zehnder, A.J., and van der Meer, J.R. (2003b) Characterization of two alternative promoters for integrase expression in the clc genomic island of Pseudomonas sp. strain B13. Mol Microbiol 49: 93-104.
-
(2003)
Mol Microbiol
, vol.49
, pp. 93-104
-
-
Sentchilo, V.1
Zehnder, A.J.2
van der Meer, J.R.3
-
57
-
-
65949092317
-
Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13
-
Sentchilo, V., Czechowska, K., Pradervand, N., Minoia, M., Miyazaki, R., and van der Meer, J.R. (2009) Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13. Mol Microbiol 72: 1293-1306.
-
(2009)
Mol Microbiol
, vol.72
, pp. 1293-1306
-
-
Sentchilo, V.1
Czechowska, K.2
Pradervand, N.3
Minoia, M.4
Miyazaki, R.5
van der Meer, J.R.6
-
58
-
-
33947305104
-
Pseudomonas knackmussii sp. nov
-
Stolz, A., Busse, H.J., and Kampfer, P. (2007) Pseudomonas knackmussii sp. nov. Int J Syst Evol Microbiol 57: 572-576.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 572-576
-
-
Stolz, A.1
Busse, H.J.2
Kampfer, P.3
-
59
-
-
0036097343
-
Comparative sequence analysis of the symbiosis island of Mesorhizobium loti strain R7A
-
Sullivan, J.T., Trzebiatowski, J.R., Cruickshank, R.W., Gouzy, J., Brown, S.D., Elliot, R.M., etal. (2002) Comparative sequence analysis of the symbiosis island of Mesorhizobium loti strain R7A. J Bacteriol 184: 3086-3095.
-
(2002)
J Bacteriol
, vol.184
, pp. 3086-3095
-
-
Sullivan, J.T.1
Trzebiatowski, J.R.2
Cruickshank, R.W.3
Gouzy, J.4
Brown, S.D.5
Elliot, R.M.6
-
60
-
-
69949085036
-
Double-tagged fluorescent bacterial bioreporter for the study of polycyclic aromatic hydrocarbon diffusion and bioavailability
-
Tecon, R., Binggeli, O., and van der Meer, J.R. (2009) Double-tagged fluorescent bacterial bioreporter for the study of polycyclic aromatic hydrocarbon diffusion and bioavailability. Environ Microbiol 11: 2271-2283.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2271-2283
-
-
Tecon, R.1
Binggeli, O.2
van der Meer, J.R.3
-
61
-
-
0038018390
-
The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids
-
Toussaint, A., Merlin, C., Monchy, S., Benotmane, M.A., Leplae, R., Mergeay, M., and Springael, D. (2003) The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids. Appl Environ Microbiol 69: 4837-4845.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 4837-4845
-
-
Toussaint, A.1
Merlin, C.2
Monchy, S.3
Benotmane, M.A.4
Leplae, R.5
Mergeay, M.6
Springael, D.7
-
62
-
-
40549108932
-
Delineation of the recombination sites necessary for integration of pathogenicity islands II and III into the Escherichia coli 536 chromosome
-
Wilde, C., Mazel, D., Hochhut, B., Middendorf, B., Le Roux, F., Carniel, E., etal. (2008) Delineation of the recombination sites necessary for integration of pathogenicity islands II and III into the Escherichia coli 536 chromosome. Mol Microbiol 68: 139-151.
-
(2008)
Mol Microbiol
, vol.68
, pp. 139-151
-
-
Wilde, C.1
Mazel, D.2
Hochhut, B.3
Middendorf, B.4
Le Roux, F.5
Carniel, E.6
-
63
-
-
0034730128
-
Genetic footprinting with mariner-based transposition in Pseudomonas aeruginosa
-
Wong, S.M., and Mekalanos, J.J. (2000) Genetic footprinting with mariner-based transposition in Pseudomonas aeruginosa. Proc Natl Acad Sci USA 97: 10191-10196.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 10191-10196
-
-
Wong, S.M.1
Mekalanos, J.J.2
-
64
-
-
74249093709
-
Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs
-
Wozniak, R.A., Fouts, D.E., Spagnoletti, M., Colombo, M.M., Ceccarelli, D., Garriss, G., etal. (2009) Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet 5: e1000786.
-
(2009)
PLoS Genet
, vol.5
-
-
Wozniak, R.A.1
Fouts, D.E.2
Spagnoletti, M.3
Colombo, M.M.4
Ceccarelli, D.5
Garriss, G.6
-
65
-
-
0002378304
-
The Horizontal Gene Pool - Bacterial Plasmids and Gene Spread
-
In Thomas, C.M. (ed.). Amsterdam: Harwood Academic Publishers.
-
Zechner, E.L., Cruz, F., Eisenbrandt, R., Grahn, A.M., Koraimann, G., Lanka, E., etal. (2000) Conjugative-DNA transfer processes. In The Horizontal Gene Pool - Bacterial Plasmids and Gene Spread. Thomas, C.M. (ed.). Amsterdam: Harwood Academic Publishers, pp. 87-174.
-
(2000)
Conjugative-DNA transfer processes
, pp. 87-174
-
-
Zechner, E.L.1
Cruz, F.2
Eisenbrandt, R.3
Grahn, A.M.4
Koraimann, G.5
Lanka, E.6
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