-
1
-
-
33846625056
-
Recombination and the nature of bacterial speciation
-
17255503, .;:–. 315/5811/476
-
Fraser C, Hanage WP, Spratt BG, Recombination and the nature of bacterial speciation. Science. 2007;315: 476–480. 315/5811/476 17255503
-
(2007)
Science
, vol.315
, pp. 476-480
-
-
Fraser, C.1
Hanage, W.P.2
Spratt, B.G.3
-
2
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
10830951, .;:–.
-
Ochman H, Lawrence JG, Groisman EA, Lateral gene transfer and the nature of bacterial innovation. Nature. 2000;405: 299–304. doi: 10.1038/3501250010830951
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
3
-
-
0026760182
-
The crisis in antibiotic resistance
-
1509257, .;:–.
-
Neu HC, The crisis in antibiotic resistance. Science. 1992;257: 1064–1073. doi: 10.1126/science.257.5073.10641509257
-
(1992)
Science
, vol.257
, pp. 1064-1073
-
-
Neu, H.C.1
-
4
-
-
79251544864
-
Rapid pneumococcal evolution in response to clinical interventions
-
21273480, ..;:–.
-
Croucher NJ, Harris SR, Fraser C, Quail MA, Burton J, van der Linden M, et al. Rapid pneumococcal evolution in response to clinical interventions. Science. 2011;331: 430–434. doi: 10.1126/science.119854521273480
-
(2011)
Science
, vol.331
, pp. 430-434
-
-
Croucher, N.J.1
Harris, S.R.2
Fraser, C.3
Quail, M.A.4
Burton, J.5
van der Linden, M.6
-
5
-
-
43049090907
-
The prokaryotic tree of life: past, present…and future?
-
18367290, .;:–.
-
McInerney JO, Cotton JA, Pisani D, The prokaryotic tree of life: past, present…and future?Trends Ecol Evol. 2008;23: 276–281. doi: 10.1016/j.tree.2008.01.00818367290
-
(2008)
Trends Ecol Evol
, vol.23
, pp. 276-281
-
-
McInerney, J.O.1
Cotton, J.A.2
Pisani, D.3
-
6
-
-
84880712059
-
Exploring the costs of horizontal gene transfer
-
23706556, .;:–.
-
Baltrus DA, Exploring the costs of horizontal gene transfer. Trends Ecol Evol. 2013;28: 489–495. doi: 10.1016/j.tree.2013.04.00223706556
-
(2013)
Trends Ecol Evol
, vol.28
, pp. 489-495
-
-
Baltrus, D.A.1
-
7
-
-
0031582708
-
From replicators to reproducers: the first major transitions leading to life
-
9299299, .;:–.
-
Szathmáry E, Maynard Smith J, From replicators to reproducers: the first major transitions leading to life. J Theor Biol. 1997;187: 555–571. doi: 10.1006/jtbi.1996.03899299299
-
(1997)
J Theor Biol
, vol.187
, pp. 555-571
-
-
Szathmáry, E.1
Maynard Smith, J.2
-
8
-
-
80052333445
-
The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation
-
21876676, .;:.
-
Guglielmini J, Quintais L, Garcillán-Barcia MP, de la Cruz F, Rocha EPC, The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation. PLoS Genet. 2011;7: e1002222. doi: 10.1371/journal.pgen.100222221876676
-
(2011)
PLoS Genet
, vol.7
, pp. e1002222
-
-
Guglielmini, J.1
Quintais, L.2
Garcillán-Barcia, M.P.3
de la Cruz, F.4
Rocha, E.P.C.5
-
9
-
-
0043197312
-
Phage as agents of lateral gene transfer
-
12941415, .;:–.
-
Canchaya C, Fournous G, Chibani-Chennoufi S, Dillmann ML, Brüssow H, Phage as agents of lateral gene transfer. Curr Opin Microbiol. 2003;6: 417–424. doi: 10.1016/S1369-5274(03)00086-912941415
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 417-424
-
-
Canchaya, C.1
Fournous, G.2
Chibani-Chennoufi, S.3
Dillmann, M.L.4
Brüssow, H.5
-
10
-
-
0026338873
-
Restriction and modification systems
-
1812816, .;:–.
-
Wilson GG, Murray NE, Restriction and modification systems. Annu Rev Genet. 1991;25: 585–627. doi: 10.1146/annurev.genet.25.1.5851812816
-
(1991)
Annu Rev Genet
, vol.25
, pp. 585-627
-
-
Wilson, G.G.1
Murray, N.E.2
-
11
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
21552286, ..;:–.
-
Makarova KS, Haft DH, Barrangou R, Brouns SJJ, Charpentier E, Horvath P, et al. Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol. 2011;9: 467–77. doi: 10.1038/nrmicro257721552286
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.J.4
Charpentier, E.5
Horvath, P.6
-
12
-
-
84920056771
-
The significance of pneumococcal types
-
20474956, .;:–.
-
Griffith F, The significance of pneumococcal types. J Hyg. 1928;27: 113–159. 20474956
-
(1928)
J Hyg
, vol.27
, pp. 113-159
-
-
Griffith, F.1
-
13
-
-
84983711696
-
Studies on the chemical nature of the substance inducing transformation of pneumococcal types
-
19871359, .;:–.
-
Avery OT, MacLeod CM, McCarty M, Studies on the chemical nature of the substance inducing transformation of pneumococcal types. J Exp Med. 1944;79: 137–158. 19871359
-
(1944)
J Exp Med
, vol.79
, pp. 137-158
-
-
Avery, O.T.1
MacLeod, C.M.2
McCarty, M.3
-
14
-
-
0032697140
-
DNA uptake in bacteria
-
10547691, .;:–.
-
Dubnau D, DNA uptake in bacteria. Annu Rev Microbiol. 1999;53: 217–244. 10547691
-
(1999)
Annu Rev Microbiol
, vol.53
, pp. 217-244
-
-
Dubnau, D.1
-
15
-
-
84894093468
-
Bacterial transformation: distribution, shared mechanisms and divergent control
-
24509783, .;:–.
-
Johnston C, Martin B, Fichant G, Polard P, Claverys J-P, Bacterial transformation: distribution, shared mechanisms and divergent control. Nat Rev Microbiol. 2014;12: 181–96. doi: 10.1038/nrmicro319924509783
-
(2014)
Nat Rev Microbiol
, vol.12
, pp. 181-196
-
-
Johnston, C.1
Martin, B.2
Fichant, G.3
Polard, P.4
Claverys, J.-P.5
-
16
-
-
7144229375
-
A competence regulon in Streptococcus pneumoniae revealed by genomic analysis
-
9535083, .;:–.
-
Campbell EA, Choi SY, Masure HR, A competence regulon in Streptococcus pneumoniae revealed by genomic analysis. Mol Microbiol. 1998;27: 929–939. 9535083
-
(1998)
Mol Microbiol
, vol.27
, pp. 929-939
-
-
Campbell, E.A.1
Choi, S.Y.2
Masure, H.R.3
-
17
-
-
0031925161
-
Isolation and characterization of three Streptococcus pneumoniae transformation-specific loci by use of a lacZ reporter insertion vector
-
9573156, .;:–.
-
Pestova E V, Morrison DA, Isolation and characterization of three Streptococcus pneumoniae transformation-specific loci by use of a lacZ reporter insertion vector. J Bacteriol. 1998;180: 2701–2710. 9573156
-
(1998)
J Bacteriol
, vol.180
, pp. 2701-2710
-
-
Pestova, E.V.1
Morrison, D.A.2
-
18
-
-
28544449319
-
The ins and outs of DNA transfer in bacteria
-
16322448, .;:–. 310/5753/1456
-
Chen I, Christie PJ, Dubnau D, The ins and outs of DNA transfer in bacteria. Science. 2005;310: 1456–1460. 310/5753/1456 16322448
-
(2005)
Science
, vol.310
, pp. 1456-1460
-
-
Chen, I.1
Christie, P.J.2
Dubnau, D.3
-
19
-
-
0021181259
-
Transformation in Haemophilus: a problem in membrane biology
-
6387128, .;;:–.
-
Kahn ME, Smith HO, Transformation in Haemophilus: a problem in membrane biology. J Membr Biol.; 1984;81: 89–103. 6387128
-
(1984)
J Membr Biol.
, vol.81
, pp. 89-103
-
-
Kahn, M.E.1
Smith, H.O.2
-
20
-
-
0016622399
-
Membrane location of a deoxyribonuclease implicated in the genetic transformation of Diplococcus pneumoniae
-
366, .;:–.
-
Lacks S, Neuberger M, Membrane location of a deoxyribonuclease implicated in the genetic transformation of Diplococcus pneumoniae. J Bacteriol. 1975;124: 1321–1329. 366
-
(1975)
J Bacteriol
, vol.124
, pp. 1321-1329
-
-
Lacks, S.1
Neuberger, M.2
-
21
-
-
0028124269
-
Mutation of the putative nucleotide binding site of the Bacillus subtilis membrane protein ComFA abolishes the uptake of DNA during transformation
-
8045895, .;:–.
-
Londoño-Vallejo JA, Dubnau D, Mutation of the putative nucleotide binding site of the Bacillus subtilis membrane protein ComFA abolishes the uptake of DNA during transformation. J Bacteriol. 1994;176: 4642–4645. 8045895
-
(1994)
J Bacteriol
, vol.176
, pp. 4642-4645
-
-
Londoño-Vallejo, J.A.1
Dubnau, D.2
-
22
-
-
0031910642
-
A new transformation-deficient mutant of Haemophilus influenzae Rd with normal DNA uptake
-
9457884, .;:–.
-
Gwinn ML, Ramanathan R, Smith HO, Tomb JF, A new transformation-deficient mutant of Haemophilus influenzae Rd with normal DNA uptake. J Bacteriol. 1998;180: 746–748. 9457884
-
(1998)
J Bacteriol
, vol.180
, pp. 746-748
-
-
Gwinn, M.L.1
Ramanathan, R.2
Smith, H.O.3
Tomb, J.F.4
-
23
-
-
0015444211
-
Transformation and deoxyribonucleic acid size: extent of degradation on entry varies with size of donor
-
4404818, .;:–.
-
Morrison DA, Guild WR, Transformation and deoxyribonucleic acid size: extent of degradation on entry varies with size of donor. J Bacteriol. 1972;112: 1157–1168. 4404818
-
(1972)
J Bacteriol
, vol.112
, pp. 1157-1168
-
-
Morrison, D.A.1
Guild, W.R.2
-
24
-
-
0015056674
-
Fate of transforming DNA after uptake by competent Bacillus subtilis: failure of donor DNA to replicate in a recombination-deficient recipient
-
4995821, .;:–.
-
Davidoff-Abelson R, Dubnau D, Fate of transforming DNA after uptake by competent Bacillus subtilis: failure of donor DNA to replicate in a recombination-deficient recipient. Proc Natl Acad Sci U S A. 1971;68: 1070–1074. 4995821
-
(1971)
Proc Natl Acad Sci U S A
, vol.68
, pp. 1070-1074
-
-
Davidoff-Abelson, R.1
Dubnau, D.2
-
25
-
-
0142125292
-
Transformation of Streptococcus pneumoniae relies on DprA- and RecA-dependent protection of incoming DNA single strands
-
14617176, .;:–.
-
Berge M, Mortier-Barriere I, Martin B, Claverys JP, Transformation of Streptococcus pneumoniae relies on DprA- and RecA-dependent protection of incoming DNA single strands. Mol Microbiol. 2003;50: 527–536. 14617176
-
(2003)
Mol Microbiol
, vol.50
, pp. 527-536
-
-
Berge, M.1
Mortier-Barriere, I.2
Martin, B.3
Claverys, J.P.4
-
26
-
-
34447325120
-
A key presynaptic role in transformation for a widespread bacterial protein: DprA conveys incoming ssDNA to RecA
-
17803906, ..;:–. S0092-8674(07)00976-2
-
Mortier-Barriere I, Velten M, Dupaigne P, Mirouze N, Pietrement O, McGovern S, et al. A key presynaptic role in transformation for a widespread bacterial protein: DprA conveys incoming ssDNA to RecA. Cell. 2007;130: 824–836. S0092-8674(07)00976-2 17803906
-
(2007)
Cell
, vol.130
, pp. 824-836
-
-
Mortier-Barriere, I.1
Velten, M.2
Dupaigne, P.3
Mirouze, N.4
Pietrement, O.5
McGovern, S.6
-
27
-
-
0031962031
-
Competence-specific induction of recA is required for full recombination proficiency during transformation in Streptococcus pneumoniae
-
9466264, .;:–.
-
Mortier-Barrière I, de Saizieu A, Claverys J-P, Martin B, Competence-specific induction of recA is required for full recombination proficiency during transformation in Streptococcus pneumoniae. Mol Microbiol. 1998;27: 159–70. doi: 10.1046/j.1365-2958.1998.00668.x9466264
-
(1998)
Mol Microbiol
, vol.27
, pp. 159-170
-
-
Mortier-Barrière, I.1
de Saizieu, A.2
Claverys, J.-P.3
Martin, B.4
-
28
-
-
36849090593
-
Natural genetic transformation: prevalence, mechanisms and function
-
17997281, .;:–.
-
Johnsborg O, Eldholm V, Håvarstein LS, Natural genetic transformation: prevalence, mechanisms and function. Res Microbiol. 2007;158: 767–778. doi: 10.1016/j.resmic.2007.09.00417997281
-
(2007)
Res Microbiol
, vol.158
, pp. 767-778
-
-
Johnsborg, O.1
Eldholm, V.2
Håvarstein, L.S.3
-
29
-
-
77958521767
-
Increasing competence in the genus Streptococcus
-
21038480, .;:–.
-
Håvarstein LS, Increasing competence in the genus Streptococcus. Mol Microbiol. 2010;78: 541–544. 21038480
-
(2010)
Mol Microbiol
, vol.78
, pp. 541-544
-
-
Håvarstein, L.S.1
-
30
-
-
0028845364
-
An unmodified heptadecapeptide pheromone induces competence for genetic transformation in Streptococcus pneumoniae
-
7479953, .;:–.
-
Håvarstein LS, Coomaraswamy G, Morrison DA, An unmodified heptadecapeptide pheromone induces competence for genetic transformation in Streptococcus pneumoniae. Proc Natl Acad Sci U S A. 1995;92: 11140–11144. 7479953
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 11140-11144
-
-
Håvarstein, L.S.1
Coomaraswamy, G.2
Morrison, D.A.3
-
31
-
-
84896695759
-
Streptococcus pneumoniae, le transformiste
-
24508048, .;():–.
-
Johnston C, Campo N, Bergé MJ, Polard P, Claverys JP, Streptococcus pneumoniae, le transformiste. Trends in Microbiology. 2014;22(3):113–119. doi: 10.1016/j.tim.2014.01.00224508048
-
(2014)
Trends in Microbiology
, vol.22
, Issue.3
, pp. 113-119
-
-
Johnston, C.1
Campo, N.2
Bergé, M.J.3
Polard, P.4
Claverys, J.P.5
-
32
-
-
77749279743
-
A novel pheromone quorum-sensing system controls the development of natural competence in Streptococcus thermophilus and Streptococcus salivarius
-
20023010, ..;:–.
-
Fontaine L, Boutry C, De Frahan MH, Delplace B, Fremaux C, Horvath P, et al. A novel pheromone quorum-sensing system controls the development of natural competence in Streptococcus thermophilus and Streptococcus salivarius. J Bacteriol. 2010;192: 1444–1454. doi: 10.1128/JB.01251-0920023010
-
(2010)
J Bacteriol
, vol.192
, pp. 1444-1454
-
-
Fontaine, L.1
Boutry, C.2
De Frahan, M.H.3
Delplace, B.4
Fremaux, C.5
Horvath, P.6
-
33
-
-
36849039449
-
The major Vibrio cholerae autoinducer and its role in virulence factor production
-
18004304, .;:–.
-
Higgins DA, Pomianek ME, Kraml CM, Taylor RK, Semmelhack MF, Bassler BL, The major Vibrio cholerae autoinducer and its role in virulence factor production. Nature. 2007;450: 883–6. doi: 10.1038/nature0628418004304
-
(2007)
Nature
, vol.450
, pp. 883-886
-
-
Higgins, D.A.1
Pomianek, M.E.2
Kraml, C.M.3
Taylor, R.K.4
Semmelhack, M.F.5
Bassler, B.L.6
-
34
-
-
0037216807
-
Transient association of an alternative sigma factor, ComX, with RNA polymerase during the period of competence for genetic transformation in Streptococcus pneumoniae
-
12486073, .;:–.
-
Luo P, Morrison DA, Transient association of an alternative sigma factor, ComX, with RNA polymerase during the period of competence for genetic transformation in Streptococcus pneumoniae. J Bacteriol. 2003;185: 349–58. 12486073
-
(2003)
J Bacteriol
, vol.185
, pp. 349-358
-
-
Luo, P.1
Morrison, D.A.2
-
35
-
-
0032538886
-
Competence in Bacillus subtilis is controlled by regulated proteolysis of a transcription factor
-
9890793, .;:–.
-
Turgay K, Hahn J, Burghoorn J, Dubnau D, Competence in Bacillus subtilis is controlled by regulated proteolysis of a transcription factor. EMBO J. 1998;17: 6730–6738. doi: 10.1093/emboj/17.22.67309890793
-
(1998)
EMBO J
, vol.17
, pp. 6730-6738
-
-
Turgay, K.1
Hahn, J.2
Burghoorn, J.3
Dubnau, D.4
-
36
-
-
33847129667
-
Cannibalism and fratricide: mechanisms and raisons d’etre
-
17277796, .;:–.
-
Claverys J-P, Håvarstein LS, Cannibalism and fratricide: mechanisms and raisons d’etre. Nat Rev Microbiol. 2007;5: 219–229. 17277796
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 219-229
-
-
Claverys, J.-P.1
Håvarstein, L.S.2
-
37
-
-
0035048054
-
A ComGA-dependent checkpoint limits growth during the escape from competence
-
11298275, .;:–.
-
Haijema BJ, Hahn J, Haynes J, Dubnau D, A ComGA-dependent checkpoint limits growth during the escape from competence. Mol Microbiol. 2001;40: 52–64. doi: 10.1046/j.1365-2958.2001.02363.x11298275
-
(2001)
Mol Microbiol
, vol.40
, pp. 52-64
-
-
Haijema, B.J.1
Hahn, J.2
Haynes, J.3
Dubnau, D.4
-
38
-
-
9644259079
-
Antibacterial activity of a competence-stimulating peptide in experimental sepsis caused by Streptococcus pneumoniae
-
15561850, ..;:–.
-
Oggioni MR, Iannelli F, Ricci S, Chiavolini D, Parigi R, Trappetti C, et al. Antibacterial activity of a competence-stimulating peptide in experimental sepsis caused by Streptococcus pneumoniae. Antimicrob Agents Chemother. 2004;48: 4725–4732. doi: 10.1128/AAC.48.12.4725-4732.200415561850
-
(2004)
Antimicrob Agents Chemother
, vol.48
, pp. 4725-4732
-
-
Oggioni, M.R.1
Iannelli, F.2
Ricci, S.3
Chiavolini, D.4
Parigi, R.5
Trappetti, C.6
-
39
-
-
33645293152
-
An excitable gene regulatory circuit induces transient cellular differentiation
-
16554821, .;:–.
-
Süel GM, Garcia-Ojalvo J, Liberman LM, Elowitz MB, An excitable gene regulatory circuit induces transient cellular differentiation. Nature. 2006;440: 545–550. doi: 10.1038/nature0458816554821
-
(2006)
Nature
, vol.440
, pp. 545-550
-
-
Süel, G.M.1
Garcia-Ojalvo, J.2
Liberman, L.M.3
Elowitz, M.B.4
-
40
-
-
34547604468
-
Noise in gene expression determines cell fate in Bacillus subtilis
-
17569828, .;:–.
-
Maamar H, Raj A, Dubnau D, Noise in gene expression determines cell fate in Bacillus subtilis. Science. 2007;317: 526–529. doi: 10.1126/science.114081817569828
-
(2007)
Science
, vol.317
, pp. 526-529
-
-
Maamar, H.1
Raj, A.2
Dubnau, D.3
-
41
-
-
67650333525
-
Episodic selection and the maintenance of competence and natural transformation in Bacillus subtilis
-
19189946, .;:–.
-
Johnsen PJ, Dubnau D, Levin BR, Episodic selection and the maintenance of competence and natural transformation in Bacillus subtilis. Genetics. 2009;181: 1521–1533. doi: 10.1534/genetics.108.09952319189946
-
(2009)
Genetics
, vol.181
, pp. 1521-1533
-
-
Johnsen, P.J.1
Dubnau, D.2
Levin, B.R.3
-
42
-
-
78049419053
-
Optimal strategy for competence differentiation in bacteria
-
20838595, .;:.
-
Wylie CS, Trout AD, Kessler DA, Levine H, Optimal strategy for competence differentiation in bacteria. PLoS Genet. 2010;6: e1001108. doi: 10.1371/journal.pgen.100110820838595
-
(2010)
PLoS Genet
, vol.6
, pp. e1001108
-
-
Wylie, C.S.1
Trout, A.D.2
Kessler, D.A.3
Levine, H.4
-
43
-
-
0027383458
-
Genes for Breakfast: The Have-Your-Cake and-Eat-lt-Too of Bacterial Transformation
-
8409360, .;:–.
-
Redfield RJ, Genes for Breakfast: The Have-Your-Cake and-Eat-lt-Too of Bacterial Transformation. J Hered. 1993;84: 400–404. 8409360
-
(1993)
J Hered
, vol.84
, pp. 400-404
-
-
Redfield, R.J.1
-
44
-
-
0003460359
-
The Genetical Theory of Natural Selection
-
.;:.
-
Fisher RA, The Genetical Theory of Natural Selection. Genetics. 1930;154: 272.
-
(1930)
Genetics
, vol.154
, pp. 272
-
-
Fisher, R.A.1
-
45
-
-
0001224667
-
Some genetic aspects of sex
-
.;:–.
-
Muller H, Some genetic aspects of sex. Am Nat. 1932;66: 118–138.
-
(1932)
Am Nat
, vol.66
, pp. 118-138
-
-
Muller, H.1
-
46
-
-
70149105095
-
The population and evolutionary dynamics of homologous gene recombination in bacteria
-
19680442, .;;:.
-
Levin BR, Cornejo OE, The population and evolutionary dynamics of homologous gene recombination in bacteria. PLoS Genet.; 2009;5: e1000601. doi: 10.1371/journal.pgen.100060119680442
-
(2009)
PLoS Genet.
, vol.5
, pp. 1000601
-
-
Levin, B.R.1
Cornejo, O.E.2
-
47
-
-
0000841452
-
Group Selection and Kin Selection
-
.;:–.
-
Smith JM, Group Selection and Kin Selection. Nature. 1964;201: 1145–1147. doi: 10.1038/2011145a0
-
(1964)
Nature
, vol.201
, pp. 1145-1147
-
-
Smith, J.M.1
-
48
-
-
0024005392
-
Evolution of bacterial transformation: is sex with dead cells ever better than no sex at all?
-
3396864, .;:–.
-
Redfield RJ, Evolution of bacterial transformation: is sex with dead cells ever better than no sex at all?Genetics. 1988;119: 213–221. 3396864
-
(1988)
Genetics
, vol.119
, pp. 213-221
-
-
Redfield, R.J.1
-
49
-
-
0031127243
-
Deleterious mutations, variable epistatic interactions, and the evolution of recombination
-
9169238, .;:–.
-
Otto SP, Feldman MW, Deleterious mutations, variable epistatic interactions, and the evolution of recombination. Theor Popul Biol. 1997;51: 134–47. doi: 10.1006/tpbi.1997.13019169238
-
(1997)
Theor Popul Biol
, vol.51
, pp. 134-147
-
-
Otto, S.P.1
Feldman, M.W.2
-
51
-
-
79957948242
-
Negative epistasis between beneficial mutations in an evolving bacterial population
-
21636772, .;:–.
-
Khan AI, Dinh DM, Schneider D, Lenski RE, Cooper TF, Negative epistasis between beneficial mutations in an evolving bacterial population. Science. 2011;332: 1193–1196. doi: 10.1126/science.120380121636772
-
(2011)
Science
, vol.332
, pp. 1193-1196
-
-
Khan, A.I.1
Dinh, D.M.2
Schneider, D.3
Lenski, R.E.4
Cooper, T.F.5
-
52
-
-
79957958115
-
Diminishing returns epistasis among beneficial mutations decelerates adaptation
-
21636771, .;:–.
-
Chou H-H, Chiu H-C, Delaney NF, Segrè D, Marx CJ, Diminishing returns epistasis among beneficial mutations decelerates adaptation. Science. 2011;332: 1190–2. doi: 10.1126/science.120379921636771
-
(2011)
Science
, vol.332
, pp. 1190-1192
-
-
Chou, H.-H.1
Chiu, H.-C.2
Delaney, N.F.3
Segrè, D.4
Marx, C.J.5
-
53
-
-
0001068043
-
Evolution in Sexual and Asexual Populations
-
.;():–.
-
Smith JM, Evolution in Sexual and Asexual Populations. The American Naturalist. 1968;102(927):469–473. doi: 10.1086/282559
-
(1968)
The American Naturalist
, vol.102
, Issue.927
, pp. 469-473
-
-
Smith, J.M.1
-
54
-
-
0002027029
-
A new evolutionary law
-
.;:–.
-
Van Valen L, A new evolutionary law. Evol Theory. 1973;1:1–30.
-
(1973)
Evol Theory
, vol.1
, pp. 1-30
-
-
Van Valen, L.1
-
55
-
-
0023185906
-
Genetic structure of Neisseria meningitidis populations in relation to serogroup, serotype, and outer membrane protein pattern
-
3108242, .;:–.
-
Caugant DA, Mocca LF, Frasch CE, Froholm LO, Zollinger WD, Selander RK, Genetic structure of Neisseria meningitidis populations in relation to serogroup, serotype, and outer membrane protein pattern. J Bacteriol. 1987;169: 2781–2792. 3108242
-
(1987)
J Bacteriol
, vol.169
, pp. 2781-2792
-
-
Caugant, D.A.1
Mocca, L.F.2
Frasch, C.E.3
Froholm, L.O.4
Zollinger, W.D.5
Selander, R.K.6
-
56
-
-
0025177273
-
Global genetic structure and molecular epidemiology of encapsulated Haemophilus influenzae
-
1967849, ..;:–.
-
Musser JM, Kroll JS, Granoff DM, Moxon ER, Brodeur BR, Campos J, et al. Global genetic structure and molecular epidemiology of encapsulated Haemophilus influenzae. Rev Infect Dis. 1990;12: 75–111. 1967849
-
(1990)
Rev Infect Dis
, vol.12
, pp. 75-111
-
-
Musser, J.M.1
Kroll, J.S.2
Granoff, D.M.3
Moxon, E.R.4
Brodeur, B.R.5
Campos, J.6
-
57
-
-
84923351553
-
Diversification of bacterial genome content through distinct mechanisms over different timescales
-
25407023, .;;:.
-
Croucher NJ, Coupland PG, Stevenson AE, Callendrello A, Bentley SD, Hanage WP, Diversification of bacterial genome content through distinct mechanisms over different timescales. Nat Commun.; 2014;5: 5471. doi: 10.1038/ncomms647125407023
-
(2014)
Nat Commun.
, vol.5
, pp. 5471
-
-
Croucher, N.J.1
Coupland, P.G.2
Stevenson, A.E.3
Callendrello, A.4
Bentley, S.D.5
Hanage, W.P.6
-
58
-
-
84901627197
-
Heterogeneity in the Frequency and Characteristics of Homologous Recombination in Pneumococcal Evolution
-
24786281, .;:.
-
Mostowy R, Croucher NJ, Hanage WP, Harris SR, Bentley S, Fraser C, Heterogeneity in the Frequency and Characteristics of Homologous Recombination in Pneumococcal Evolution. PLoS Genet. 2014;10: e1004300. doi: 10.1371/journal.pgen.100430024786281
-
(2014)
PLoS Genet
, vol.10
, pp. 1004300
-
-
Mostowy, R.1
Croucher, N.J.2
Hanage, W.P.3
Harris, S.R.4
Bentley, S.5
Fraser, C.6
-
59
-
-
0021021425
-
Mismatch repair in Streptococcus pneumoniae: relationship between base mismatches and transformation efficiencies
-
6310606, .;:–.
-
Claverys JP, Méjean V, Gasc AM, Sicard AM, Mismatch repair in Streptococcus pneumoniae: relationship between base mismatches and transformation efficiencies. Proc Natl Acad Sci U S A. 1983;80: 5956–60. 6310606
-
(1983)
Proc Natl Acad Sci U S A
, vol.80
, pp. 5956-5960
-
-
Claverys, J.P.1
Méjean, V.2
Gasc, A.M.3
Sicard, A.M.4
-
60
-
-
84864028194
-
A high-resolution view of genome-wide pneumococcal transformation
-
22719250, .;:.
-
Croucher NJ, Harris SR, Barquist L, Parkhill J, Bentley SD, A high-resolution view of genome-wide pneumococcal transformation. PLoS Pathog. 2012;8: e1002745. doi: 10.1371/journal.ppat.100274522719250
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002745
-
-
Croucher, N.J.1
Harris, S.R.2
Barquist, L.3
Parkhill, J.4
Bentley, S.D.5
-
61
-
-
0029822522
-
Bacillus subtilis mutS mutL operon: identification, nucleotide sequence and mutagenesis
-
8760914, .;(:–.
-
Ginetti F, Perego M, Albertini AM, Galizzi A, Bacillus subtilis mutS mutL operon: identification, nucleotide sequence and mutagenesis. Microbiology. 1996;142 Pt 8: 2021–9. doi: 10.1099/13500872-142-8-20218760914
-
(1996)
Microbiology
, vol.142
, pp. 2021-2029
-
-
Ginetti, F.1
Perego, M.2
Albertini, A.M.3
Galizzi, A.4
-
62
-
-
0033959357
-
Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation
-
10648528, .;:–.
-
Majewski J, Zawadzki P, Pickerill P, Cohan FM, Dowson CG, Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation. J Bacteriol. 2000;182: 1016–1023. 10648528
-
(2000)
J Bacteriol
, vol.182
, pp. 1016-1023
-
-
Majewski, J.1
Zawadzki, P.2
Pickerill, P.3
Cohan, F.M.4
Dowson, C.G.5
-
63
-
-
0018688913
-
A hex mutant of Haemophilus influenzae
-
316097, .;;:–.
-
Bagci H, Stuy J, A hex mutant of Haemophilus influenzae. Mol Gen Genet MGG.; 1979;175: 175–179. doi: 10.1007/BF00425533316097
-
(1979)
Mol Gen Genet MGG
, vol.175
, pp. 175-179
-
-
Bagci, H.1
Stuy, J.2
-
64
-
-
64349114440
-
Genome dynamics in major bacterial pathogens
-
19396949, ..;:–.
-
Ambur OH, Davidsen T, Frye SA, Balasingham S V, Lagesen K, Rognes T, et al. Genome dynamics in major bacterial pathogens. FEMS Microbiol Rev. 2009;33: 453–470. doi: 10.1111/j.1574-6976.2009.00173.x19396949
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 453-470
-
-
Ambur, O.H.1
Davidsen, T.2
Frye, S.A.3
Balasingham, S.V.4
Lagesen, K.5
Rognes, T.6
-
65
-
-
0019423280
-
Evolution of Sexual Reproduction: Importance of DNA Repair, Complementation, and Variation
-
.;;:–.
-
Bernstein H, Byers GS, Michod RE, Evolution of Sexual Reproduction: Importance of DNA Repair, Complementation, and Variation. Am Nat.; 1981;117: 537–549.
-
(1981)
Am Nat
, vol.117
, pp. 537-549
-
-
Bernstein, H.1
Byers, G.S.2
Michod, R.E.3
-
66
-
-
33745920513
-
Antibiotic stress induces genetic transformability in the human pathogen Streptococcus pneumoniae
-
16825569, .;:–. 313/5783/89
-
Prudhomme M, Attaiech L, Sanchez G, Martin B, Claverys JP, Antibiotic stress induces genetic transformability in the human pathogen Streptococcus pneumoniae. Science. 2006;313: 89–92. 313/5783/89 16825569
-
(2006)
Science
, vol.313
, pp. 89-92
-
-
Prudhomme, M.1
Attaiech, L.2
Sanchez, G.3
Martin, B.4
Claverys, J.P.5
-
67
-
-
79951660517
-
Antibiotics and UV radiation induce competence for natural transformation in Legionella pneumophila
-
21169481, .;:–.
-
Charpentier X, Kay E, Schneider D, Shuman HA, Antibiotics and UV radiation induce competence for natural transformation in Legionella pneumophila. J Bacteriol. 2011;193: 1114–21. doi: 10.1128/JB.01146-1021169481
-
(2011)
J Bacteriol
, vol.193
, pp. 1114-1121
-
-
Charpentier, X.1
Kay, E.2
Schneider, D.3
Shuman, H.A.4
-
68
-
-
77957673732
-
DNA damage triggers genetic exchange in Helicobacter pylori
-
.;:–.
-
Dorer MS, Fero J, Salama NR, DNA damage triggers genetic exchange in Helicobacter pylori. PLoS Pathog. 2010;6: 1–10. doi: 10.1371/journal.ppat.1001026
-
(2010)
PLoS Pathog
, vol.6
, pp. 1-10
-
-
Dorer, M.S.1
Fero, J.2
Salama, N.R.3
-
69
-
-
0024633150
-
DNA repair and the evolution of transformation in Bacillus subtilis. II. Role of inducible repair
-
2497048, .;:–.
-
Wojciechowski MF, Hoelzer M a., Michod RE, DNA repair and the evolution of transformation in Bacillus subtilis. II. Role of inducible repair. Genetics. 1989;121: 411–422. 2497048
-
(1989)
Genetics
, vol.121
, pp. 411-422
-
-
Wojciechowski, M.F.1
Hoelzer, M.2
Michod, R.E.3
-
70
-
-
0025940878
-
DNA repair and the evolution of transformation in Bacillus subtilis. III. Sex with damaged DNA
-
1906416, .;:–.
-
Hoelzer MA, Michod RE, DNA repair and the evolution of transformation in Bacillus subtilis. III. Sex with damaged DNA. Genetics. 1991;128: 215–223. 1906416
-
(1991)
Genetics
, vol.128
, pp. 215-223
-
-
Hoelzer, M.A.1
Michod, R.E.2
-
71
-
-
0027447689
-
Evolution of natural transformation: testing the DNA repair hypothesis in Bacillus subtilis and Haemophilus influenzae
-
8462839, .;:–.
-
Redfield RJ, Evolution of natural transformation: testing the DNA repair hypothesis in Bacillus subtilis and Haemophilus influenzae. Genetics. 1993;133: 755–761. 8462839
-
(1993)
Genetics
, vol.133
, pp. 755-761
-
-
Redfield, R.J.1
-
72
-
-
0028005806
-
DNA repair and the evolution of transformation IV. DNA damage increases transformation
-
.;:–.
-
Michod RE, Wojciechowski MF, DNA repair and the evolution of transformation IV. DNA damage increases transformation. J Evol Biol. 1994;7: 147–175. doi: 10.1046/j.1420-9101.1994.7020147.x
-
(1994)
J Evol Biol
, vol.7
, pp. 147-175
-
-
Michod, R.E.1
Wojciechowski, M.F.2
-
73
-
-
84873528806
-
SOS response activation and competence development are antagonistic mechanisms in Streptococcus thermophilus
-
23204467, .;:–.
-
Boutry C, Delplace B, Clippe A, Fontaine L, Hols P, SOS response activation and competence development are antagonistic mechanisms in Streptococcus thermophilus. J Bacteriol. 2013;195: 696–707. doi: 10.1128/JB.01605-1223204467
-
(2013)
J Bacteriol
, vol.195
, pp. 696-707
-
-
Boutry, C.1
Delplace, B.2
Clippe, A.3
Fontaine, L.4
Hols, P.5
-
74
-
-
0027383458
-
Genes for Breakfast: The Have-Your-Cake and-Eat-lt-Too of Bacterial Transformation
-
8409360, .;:–.
-
Redfield RJ, Genes for Breakfast: The Have-Your-Cake and-Eat-lt-Too of Bacterial Transformation. J Hered. 1993;84: 400–404. 8409360
-
(1993)
J Hered
, vol.84
, pp. 400-404
-
-
Redfield, R.J.1
-
75
-
-
0026441235
-
DNA repair and the evolution of transformation in Haemophilus influenzae
-
1334020, .;:–.
-
Mongold JA, DNA repair and the evolution of transformation in Haemophilus influenzae. Genetics. 1992;132: 893–898. 1334020
-
(1992)
Genetics
, vol.132
, pp. 893-898
-
-
Mongold, J.A.1
-
76
-
-
23844495817
-
Induction of the SOS regulon of Haemophilus influenzae does not affect phase variation rates at tetraneucleotide or dinucleotide repeats
-
16079351, .;:–.
-
Sweetman WA, Moxon ER, Bayliss CD, Induction of the SOS regulon of Haemophilus influenzae does not affect phase variation rates at tetraneucleotide or dinucleotide repeats. Microbiology. 2005;151: 2751–2763. doi: 10.1099/mic.0.27996-016079351
-
(2005)
Microbiology
, vol.151
, pp. 2751-2763
-
-
Sweetman, W.A.1
Moxon, E.R.2
Bayliss, C.D.3
-
77
-
-
84868153016
-
Induction of competence for genetic transformation by antibiotics: Convergent evolution of stress responses in distant bacterial species lacking SOS?
-
22910199, .;:–.
-
Charpentier X, Polard P, Claverys JP, Induction of competence for genetic transformation by antibiotics: Convergent evolution of stress responses in distant bacterial species lacking SOS?Curr Opin Microbiol. 2012;15: 570–576. doi: 10.1016/j.mib.2012.08.00122910199
-
(2012)
Curr Opin Microbiol
, vol.15
, pp. 570-576
-
-
Charpentier, X.1
Polard, P.2
Claverys, J.P.3
-
78
-
-
0032947994
-
An operon that confers UV resistance by evoking the SOS mutagenic response in streptococcal conjugative transposon Tn5252
-
10217768, .;:–.
-
Munoz-Najar U, Vijayakumar MN, An operon that confers UV resistance by evoking the SOS mutagenic response in streptococcal conjugative transposon Tn5252. J Bacteriol. 1999;181: 2782–2788. 10217768
-
(1999)
J Bacteriol
, vol.181
, pp. 2782-2788
-
-
Munoz-Najar, U.1
Vijayakumar, M.N.2
-
79
-
-
1542327668
-
Trends between gene content and genome size in prokaryotic species with larger genomes
-
14973198, .;:–.
-
Konstantinidis KT, Tiedje JM, Trends between gene content and genome size in prokaryotic species with larger genomes. Proc Natl Acad Sci U S A. 2004;101: 3160–5. doi: 10.1073/pnas.030865310014973198
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 3160-3165
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
80
-
-
0022526190
-
The Biology of Natural Transformation
-
3535646, .;;:–.
-
Stewart GJ, Carlson CA, The Biology of Natural Transformation. Annu Rev Microbiol.; 1986;40: 211–231. doi: 10.1146/annurev.mi.40.100186.0012353535646
-
(1986)
Annu Rev Microbiol.
, vol.40
, pp. 211-231
-
-
Stewart, G.J.1
Carlson, C.A.2
-
81
-
-
0035006343
-
Competence development by Haemophilus influenzae is regulated by the availability of nucleic acid precursors
-
11359575, .;:–.
-
Macfadyen LP, Chen D, Vo HC, Liao D, Sinotte R, Redfield RJ, Competence development by Haemophilus influenzae is regulated by the availability of nucleic acid precursors. Mol Microbiol. 2001;40: 700–707. doi: 10.1046/j.1365-2958.2001.02419.x11359575
-
(2001)
Mol Microbiol
, vol.40
, pp. 700-707
-
-
Macfadyen, L.P.1
Chen, D.2
Vo, H.C.3
Liao, D.4
Sinotte, R.5
Redfield, R.J.6
-
82
-
-
84870253535
-
Natural competence in Vibrio cholerae is controlled by a nucleoside scavenging response that requires CytR-dependent anti-activation
-
23016895, .;:–.
-
Antonova ES, Bernardy EE, Hammer BK, Natural competence in Vibrio cholerae is controlled by a nucleoside scavenging response that requires CytR-dependent anti-activation. Mol Microbiol. 2012;86: 1215–31. doi: 10.1111/mmi.1205423016895
-
(2012)
Mol Microbiol
, vol.86
, pp. 1215-1231
-
-
Antonova, E.S.1
Bernardy, E.E.2
Hammer, B.K.3
-
83
-
-
0035685198
-
DNA as a Nutrient: Novel Role for Bacterial Competence Gene Homologs
-
11591672, .;:–.
-
Finkel SE, Kolter R, DNA as a Nutrient: Novel Role for Bacterial Competence Gene Homologs. J Bacteriol. 2001;183: 6288–6293. 11591672
-
(2001)
J Bacteriol
, vol.183
, pp. 6288-6293
-
-
Finkel, S.E.1
Kolter, R.2
-
84
-
-
84902739755
-
Variable recombination dynamics during the emergence, transmission and “disarming” of a multidrug-resistant pneumococcal clone
-
24957517, .;;:.
-
Croucher NJ, Hanage WP, Harris SR, McGee L, van der Linden M, de Lencastre H, et al. Variable recombination dynamics during the emergence, transmission and “disarming” of a multidrug-resistant pneumococcal clone. BMC Biol.; 2014;12: 49. doi: 10.1186/1741-7007-12-4924957517
-
(2014)
BMC Biol.
, vol.12
, pp. 49
-
-
Croucher, N.J.1
Hanage, W.P.2
Harris, S.R.3
McGee, L.4
van der Linden, M.5
de Lencastre, H.6
-
85
-
-
84898861325
-
Extensive Cotransformation of Natural Variation into Chromosomes of Naturally Competent Haemophilus influenzae
-
24569039, .;;:–.
-
Mell JC, Lee JY, Firme M, Sinha S, Redfield RJ, Extensive Cotransformation of Natural Variation into Chromosomes of Naturally Competent Haemophilus influenzae. G3 Genes| Genomes| Genet. Genetics Society of America; 2014;4: 717–731. doi: 10.1534/g3.113.00959724569039
-
(2014)
G3 Genes| Genomes| Genet. Genetics Society of America
, vol.4
, pp. 717-731
-
-
Mell, J.C.1
Lee, J.Y.2
Firme, M.3
Sinha, S.4
Redfield, R.J.5
-
86
-
-
0034128665
-
Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data
-
10747043, .;:–.
-
Feil EJ, Smith JM, Enright MC, Spratt BG, Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data. Genetics. 2000;154: 1439–1450. 10747043
-
(2000)
Genetics
, vol.154
, pp. 1439-1450
-
-
Feil, E.J.1
Smith, J.M.2
Enright, M.C.3
Spratt, B.G.4
-
87
-
-
23944506044
-
Mobile genetic elements: the agents of open source evolution
-
16138100, .;:–.
-
Frost LS, Leplae R, Summers AO, Toussaint A, Mobile genetic elements: the agents of open source evolution. Nat Rev Microbiol. 2005;3: 722–732. 16138100
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 722-732
-
-
Frost, L.S.1
Leplae, R.2
Summers, A.O.3
Toussaint, A.4
-
88
-
-
0031930791
-
The effect of mismatch repair and heteroduplex formation on sexual isolation in Bacillus
-
9475717, .;:–.
-
Majewski J, Cohan FM, The effect of mismatch repair and heteroduplex formation on sexual isolation in Bacillus. Genetics. 1998;148: 13–18. 9475717
-
(1998)
Genetics
, vol.148
, pp. 13-18
-
-
Majewski, J.1
Cohan, F.M.2
-
89
-
-
84874765546
-
Programmed Protection of Foreign DNA from Restriction Allows Pathogenicity Island Exchange during Pneumococcal Transformation
-
23459610, .;:.
-
Johnston C, Martin B, Granadel C, Polard P, Claverys JP, Programmed Protection of Foreign DNA from Restriction Allows Pathogenicity Island Exchange during Pneumococcal Transformation. PLoS Pathog. 2013;9: e1003178. doi: 10.1371/journal.ppat.100317823459610
-
(2013)
PLoS Pathog
, vol.9
, pp. e1003178
-
-
Johnston, C.1
Martin, B.2
Granadel, C.3
Polard, P.4
Claverys, J.P.5
-
90
-
-
0015464814
-
Transformation and transduction of a large deletion mutation in Bacillus subtilis
-
4632051, .;;:–.
-
Adams A, Transformation and transduction of a large deletion mutation in Bacillus subtilis. Mol Gen Genet MGG.; 1972;118: 311–322. doi: 10.1007/BF003335664632051
-
(1972)
Mol Gen Genet MGG
, vol.118
, pp. 311-322
-
-
Adams, A.1
-
91
-
-
0019812151
-
Addition, deletion, and substitution of long nonhomologous deoxyribonucleic acid segments by genetic transformation of Haemophilus influenzae
-
6975273, .;:–.
-
Stuy JH, Walter RB, Addition, deletion, and substitution of long nonhomologous deoxyribonucleic acid segments by genetic transformation of Haemophilus influenzae. J Bacteriol. 1981;148: 565–571. 6975273
-
(1981)
J Bacteriol
, vol.148
, pp. 565-571
-
-
Stuy, J.H.1
Walter, R.B.2
-
92
-
-
0018962438
-
Transformation of Streptococcus pneumoniae with S. pneumoniae-lambda phage hybrid DNA: induction of deletions
-
6251465, .;:–.
-
Claverys JP, Lefevre JC, Sicard AM, Transformation of Streptococcus pneumoniae with S. pneumoniae-lambda phage hybrid DNA: induction of deletions. Proc Natl Acad Sci U S A. 1980;77: 3534–3538. doi: 10.1073/pnas.77.6.35346251465
-
(1980)
Proc Natl Acad Sci U S A
, vol.77
, pp. 3534-3538
-
-
Claverys, J.P.1
Lefevre, J.C.2
Sicard, A.M.3
-
93
-
-
0024365924
-
Conversion of deletions during recombination in pneumococcal transformation
-
2599365, .;:–.
-
Lefevre JC, Mostachfi P, Gasc AM, Guillot E, Pasta F, Sicard M, Conversion of deletions during recombination in pneumococcal transformation. Genetics. 1989;123: 455–464. 2599365
-
(1989)
Genetics
, vol.123
, pp. 455-464
-
-
Lefevre, J.C.1
Mostachfi, P.2
Gasc, A.M.3
Guillot, E.4
Pasta, F.5
Sicard, M.6
-
94
-
-
0015464814
-
Transformation and transduction of a large deletion mutation in Bacillus subtilis
-
4632051, .;;:–.
-
Adams A, Transformation and transduction of a large deletion mutation in Bacillus subtilis. Mol Gen Genet MGG.; 1972;118: 311–322. doi: 10.1007/BF003335664632051
-
(1972)
Mol Gen Genet MGG
, vol.118
, pp. 311-322
-
-
Adams, A.1
-
95
-
-
60049088641
-
Oscillations in continuous culture populations of Streptococcus pneumoniae: population dynamics and the evolution of clonal suicide
-
19129121, .;:–.
-
Cornejo OE, Rozen DE, May RM, Levin BR, Oscillations in continuous culture populations of Streptococcus pneumoniae: population dynamics and the evolution of clonal suicide. Proc R Soc B. 2009;276: 999–1008. doi: 10.1098/rspb.2008.141519129121
-
(2009)
Proc R Soc B
, vol.276
, pp. 999-1008
-
-
Cornejo, O.E.1
Rozen, D.E.2
May, R.M.3
Levin, B.R.4
-
96
-
-
84888231923
-
Conservative Sex and the Benefits of Transformation in Streptococcus pneumoniae
-
.;:–.
-
Engelmoer DJP, Donaldson I, Rozen DE, Conservative Sex and the Benefits of Transformation in Streptococcus pneumoniae. PLoS Pathog. 2013;9: 1–7. doi: 10.1371/journal.ppat.1003758
-
(2013)
PLoS Pathog
, vol.9
, pp. 1-7
-
-
Engelmoer, D.J.P.1
Donaldson, I.2
Rozen, D.E.3
-
97
-
-
84891681955
-
Within-host selection is limited by an effective population of Streptococcus pneumoniae during nasopharyngeal colonization
-
24082074, .;:–.
-
Li Y, Thompson CM, Trzciński K, Lipsitch M, Within-host selection is limited by an effective population of Streptococcus pneumoniae during nasopharyngeal colonization. Infect Immun. 2013;81: 4534–4543. doi: 10.1128/IAI.00527-1324082074
-
(2013)
Infect Immun
, vol.81
, pp. 4534-4543
-
-
Li, Y.1
Thompson, C.M.2
Trzciński, K.3
Lipsitch, M.4
-
98
-
-
84895858474
-
Dense genomic sampling identifies highways of pneumococcal recombination
-
24509479, ..;:–.
-
Chewapreecha C, Harris SR, Croucher NJ, Turner C, Marttinen P, Cheng L, et al. Dense genomic sampling identifies highways of pneumococcal recombination. Nat Genet. 2014;46: 305–309. doi: 10.1038/ng.289524509479
-
(2014)
Nat Genet
, vol.46
, pp. 305-309
-
-
Chewapreecha, C.1
Harris, S.R.2
Croucher, N.J.3
Turner, C.4
Marttinen, P.5
Cheng, L.6
-
99
-
-
84933069206
-
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
-
25414349, ..;:.
-
Croucher NJ, Page AJ, Connor TR, Delaney AJ, Keane JA, Bentley SD, et al. Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. Nucleic Acids Res. 2015;43: e15. doi: 10.1093/nar/gku119625414349
-
(2015)
Nucleic Acids Res
, vol.43
, pp. e15
-
-
Croucher, N.J.1
Page, A.J.2
Connor, T.R.3
Delaney, A.J.4
Keane, J.A.5
Bentley, S.D.6
-
100
-
-
55049138544
-
Evolutionary patterns in prokaryotic genomes
-
18838127, .. pp.–.
-
Rocha EP, Evolutionary patterns in prokaryotic genomes. Current Opinion in Microbiology. 2008. pp. 454–460. doi: 10.1016/j.mib.2008.09.00718838127
-
(2008)
Current Opinion in Microbiology
, pp. 454-460
-
-
Rocha, E.P.1
-
101
-
-
84906309033
-
Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever
-
25092320, ..;:–.
-
Zhou Z, McCann A, Weill F-X, Blin C, Nair S, Wain J, et al. Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever. Proc Natl Acad Sci. 2014;111: 12199–12204. doi: 10.1073/pnas.141101211125092320
-
(2014)
Proc Natl Acad Sci
, vol.111
, pp. 12199-12204
-
-
Zhou, Z.1
McCann, A.2
Weill, F.-X.3
Blin, C.4
Nair, S.5
Wain, J.6
-
102
-
-
0036195264
-
Macrolide efflux genes mef(A) and mef(E) are carried by different genetic elements in Streptococcus pneumoniae
-
11880392, ..;:–.
-
Del Grosso M, Iannelli F, Messina C, Santagati M, Petrosillo N, Stefani S, et al. Macrolide efflux genes mef(A) and mef(E) are carried by different genetic elements in Streptococcus pneumoniae. J Clin Microbiol. 2002;40: 774–778. 11880392
-
(2002)
J Clin Microbiol
, vol.40
, pp. 774-778
-
-
Del Grosso, M.1
Iannelli, F.2
Messina, C.3
Santagati, M.4
Petrosillo, N.5
Stefani, S.6
-
103
-
-
18644378733
-
Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease
-
12354221, ..;:–.
-
Glaser P, Rusniok C, Buchrieser C, Chevalier F, Frangeul L, Msadek T, et al. Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease. Mol Microbiol. 2002;45: 1499–1513. doi: 10.1046/j.1365-2958.2002.03126.x12354221
-
(2002)
Mol Microbiol
, vol.45
, pp. 1499-1513
-
-
Glaser, P.1
Rusniok, C.2
Buchrieser, C.3
Chevalier, F.4
Frangeul, L.5
Msadek, T.6
-
104
-
-
84866043524
-
The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome
-
22834929, ..;:–.
-
Lopez-Sanchez MJ, Sauvage E, Da Cunha V, Clermont D, Ratsima Hariniaina E, Gonzalez-Zorn B, et al. The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome. Mol Microbiol. 2012;85: 1057–1071. doi: 10.1111/j.1365-2958.2012.08172.x22834929
-
(2012)
Mol Microbiol
, vol.85
, pp. 1057-1071
-
-
Lopez-Sanchez, M.J.1
Sauvage, E.2
Da Cunha, V.3
Clermont, D.4
Ratsima Hariniaina, E.5
Gonzalez-Zorn, B.6
-
105
-
-
38949123143
-
Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
-
18065545, ..;:–.
-
Deveau H, Barrangou R, Garneau JE, Labonté J, Fremaux C, Boyaval P, et al. Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J Bacteriol. 2008;190: 1390–1400. doi: 10.1128/JB.01412-0718065545
-
(2008)
J Bacteriol
, vol.190
, pp. 1390-1400
-
-
Deveau, H.1
Barrangou, R.2
Garneau, J.E.3
Labonté, J.4
Fremaux, C.5
Boyaval, P.6
-
106
-
-
78649342032
-
The Escherichia coli CRISPR system protects from λ lysogenization, lysogens, and prophage induction
-
20889749, .;:–.
-
Edgar R, Qimron U, The Escherichia coli CRISPR system protects from λ lysogenization, lysogens, and prophage induction. J Bacteriol. 2010;192: 6291–6294. doi: 10.1128/JB.00644-1020889749
-
(2010)
J Bacteriol
, vol.192
, pp. 6291-6294
-
-
Edgar, R.1
Qimron, U.2
-
107
-
-
84908456823
-
Conditional tolerance of temperate phages via transcription-dependent CRISPR-Cas targeting
-
25174707, .;:–.
-
Goldberg GW, Jiang W, Bikard D, Marraffini LA, Conditional tolerance of temperate phages via transcription-dependent CRISPR-Cas targeting. Nature. 2014;514: 633–637. doi: 10.1038/nature1363725174707
-
(2014)
Nature
, vol.514
, pp. 633-637
-
-
Goldberg, G.W.1
Jiang, W.2
Bikard, D.3
Marraffini, L.A.4
-
108
-
-
63449097053
-
Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens
-
19325880, ..;;:.
-
Holden MTG, Heather Z, Paillot R, Steward KF, Webb K, Ainslie F, et al. Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens. PLoS Pathog.; 2009;5: e1000346. doi: 10.1371/journal.ppat.100034619325880
-
(2009)
PLoS Pathog
, vol.5
, pp. e1000346
-
-
Holden, M.T.G.1
Heather, Z.2
Paillot, R.3
Steward, K.F.4
Webb, K.5
Ainslie, F.6
-
109
-
-
0033818945
-
Identification in Listeria monocytogenes of MecA, a homologue of the Bacillus subtilis competence regulatory protein
-
11004200, .;:–.
-
Borezee E, Msadek T, Durant L, Berche P, Identification in Listeria monocytogenes of MecA, a homologue of the Bacillus subtilis competence regulatory protein. J Bacteriol. 2000;182: 5931–4. doi: 10.1128/JB.182.20.5931-5934.200011004200
-
(2000)
J Bacteriol
, vol.182
, pp. 5931-5934
-
-
Borezee, E.1
Msadek, T.2
Durant, L.3
Berche, P.4
-
110
-
-
0037376106
-
Comparison of the genome sequences of Listeria monocytogenes and Listeria innocua: clues for evolution and pathogenicity
-
12648839, .;:–.
-
Buchrieser C, Rusniok C, Kunst F, Cossart P, Glaser P, Comparison of the genome sequences of Listeria monocytogenes and Listeria innocua: clues for evolution and pathogenicity. FEMS Immunol Med Microbiol. 2003;35: 207–213. 12648839
-
(2003)
FEMS Immunol Med Microbiol
, vol.35
, pp. 207-213
-
-
Buchrieser, C.1
Rusniok, C.2
Kunst, F.3
Cossart, P.4
Glaser, P.5
-
111
-
-
0026768828
-
Identification of Bacillus subtilis genes for septum placement and shape determination
-
1400224, .;:–.
-
Levin PA, Margolis PS, Setlow P, Losick R, Sun D, Identification of Bacillus subtilis genes for septum placement and shape determination. J Bacteriol. 1992;174: 6717–28. 1400224
-
(1992)
J Bacteriol
, vol.174
, pp. 6717-6728
-
-
Levin, P.A.1
Margolis, P.S.2
Setlow, P.3
Losick, R.4
Sun, D.5
-
112
-
-
49449091154
-
RadC, a misleading name?
-
18556794, .;:–.
-
Attaiech L, Granadel C, Claverys JP, Martin B, RadC, a misleading name?J Bacteriol. 2008;190: 5729–5732. doi: 10.1128/JB.00425-0818556794
-
(2008)
J Bacteriol
, vol.190
, pp. 5729-5732
-
-
Attaiech, L.1
Granadel, C.2
Claverys, J.P.3
Martin, B.4
-
113
-
-
84868372186
-
An evolutionary link between natural transformation and CRISPR adaptive immunity
-
.;:–.
-
Jorth P, Whiteley M, An evolutionary link between natural transformation and CRISPR adaptive immunity. MBio. 2012;3: 1–7. doi: 10.1128/mBio.00309-12
-
(2012)
MBio
, vol.3
, pp. 1-7
-
-
Jorth, P.1
Whiteley, M.2
-
114
-
-
84925538765
-
Comparative genomic analysis of Acinetobacter baumannii clinical isolates reveals extensive genomic variation and diverse antibiotic resistance determinants
-
25534766, .;:.
-
Liu F, Zhu Y, Yi Y, Lu N, Zhu B, Hu Y, Comparative genomic analysis of Acinetobacter baumannii clinical isolates reveals extensive genomic variation and diverse antibiotic resistance determinants. BMC Genomics. 2014;15: 1163. doi: 10.1186/1471-2164-15-116325534766
-
(2014)
BMC Genomics
, vol.15
, pp. 1163
-
-
Liu, F.1
Zhu, Y.2
Yi, Y.3
Lu, N.4
Zhu, B.5
Hu, Y.6
-
115
-
-
33750531455
-
Evolution of competence and DNA uptake specificity in the Pasteurellaceae
-
17038178, .;:.
-
Redfield RJ, Findlay WA, Bossé J, Kroll JS, Cameron ADS, Nash JH, Evolution of competence and DNA uptake specificity in the Pasteurellaceae. BMC Evol Biol. 2006;6: 82. doi: 10.1186/1471-2148-6-8217038178
-
(2006)
BMC Evol Biol
, vol.6
, pp. 82
-
-
Redfield, R.J.1
Findlay, W.A.2
Bossé, J.3
Kroll, J.S.4
Cameron, A.D.S.5
Nash, J.H.6
-
116
-
-
0028913508
-
The recA gene of Streptococcus pneumoniae is part of a competence-induced operon and controls lysogenic induction
-
7538190, .;;:–.
-
Martin B, Garcia P, Castanié M-P, Claverys J-P, The recA gene of Streptococcus pneumoniae is part of a competence-induced operon and controls lysogenic induction. Mol Microbiol.; 1995;15: 367–379. 7538190
-
(1995)
Mol Microbiol.
, vol.15
, pp. 367-379
-
-
Martin, B.1
Garcia, P.2
Castanié, M.-P.3
Claverys, J.-P.4
-
117
-
-
0015863579
-
Relationship between prophage induction and transformation in Haemophilus influenzae
-
4541535, .;:–.
-
Setlow JK, Boling ME, Allison DP, Beattie KL, Relationship between prophage induction and transformation in Haemophilus influenzae. J Bacteriol. 1973;115: 153–161. 4541535
-
(1973)
J Bacteriol
, vol.115
, pp. 153-161
-
-
Setlow, J.K.1
Boling, M.E.2
Allison, D.P.3
Beattie, K.L.4
-
118
-
-
0016432158
-
Transformation and transfection in lysogenic strains of Bacillus subtilis: evidence for selective induction of prophage in competent cells
-
803952, .;:–.
-
Yasbin RE, Wilson GA, Young FE, Transformation and transfection in lysogenic strains of Bacillus subtilis: evidence for selective induction of prophage in competent cells. J Bacteriol. 1975;121: 296–304. 803952
-
(1975)
J Bacteriol
, vol.121
, pp. 296-304
-
-
Yasbin, R.E.1
Wilson, G.A.2
Young, F.E.3
-
119
-
-
0345827436
-
SOS response promotes horizontal dissemination of antibiotic resistance genes
-
14688795, .;:–.
-
Beaber JW, Hochhut B, Waldor MK, SOS response promotes horizontal dissemination of antibiotic resistance genes. Nature. 2004;427: 72–74. doi: 10.1038/nature0224114688795
-
(2004)
Nature
, vol.427
, pp. 72-74
-
-
Beaber, J.W.1
Hochhut, B.2
Waldor, M.K.3
-
120
-
-
24644481914
-
Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response
-
16105942, .;:–.
-
Auchtung JM, Lee CA, Monson RE, Lehman AP, Grossman AD, Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response. Proc Natl Acad Sci U S A. 2005;102: 12554–12559. doi: 10.1073/pnas.050583510216105942
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 12554-12559
-
-
Auchtung, J.M.1
Lee, C.A.2
Monson, R.E.3
Lehman, A.P.4
Grossman, A.D.5
-
121
-
-
84877975330
-
Competence for natural genetic transformation in the Streptococcus bovis Group streptococci S. infantarius and S. macedonicus
-
23543718, .;:–.
-
Morrison DA, Guédon E, Renault P, Competence for natural genetic transformation in the Streptococcus bovis Group streptococci S. infantarius and S. macedonicus. J Bacteriol. 2013;195: 2612–2620. doi: 10.1128/JB.00166-1323543718
-
(2013)
J Bacteriol
, vol.195
, pp. 2612-2620
-
-
Morrison, D.A.1
Guédon, E.2
Renault, P.3
-
122
-
-
33750343778
-
Establishing a genetic system for ecological studies of Streptococcus oligofermentans
-
17064375, .;;:–.
-
Tong H, Zhu B, Chen W, Qi F, Shi W, Dong X, Establishing a genetic system for ecological studies of Streptococcus oligofermentans. FEMS Microbiol Lett.; 2006;264: 213–219. doi: 10.1111/j.1574-6968.2006.00453.x17064375
-
(2006)
FEMS Microbiol Lett.
, vol.264
, pp. 213-219
-
-
Tong, H.1
Zhu, B.2
Chen, W.3
Qi, F.4
Shi, W.5
Dong, X.6
-
123
-
-
84903388905
-
Control of competence for DNA transformation in Streptococcus suis by genetically transferable pherotypes
-
24968201, .;:.
-
Zaccaria E, van Baarlen P, de Greeff A, Morrison DA, Smith H, Wells JM, Control of competence for DNA transformation in Streptococcus suis by genetically transferable pherotypes. PLoS ONE. 2014;9: e99394. doi: 10.1371/journal.pone.009939424968201
-
(2014)
PLoS ONE
, vol.9
, pp. e99394
-
-
Zaccaria, E.1
van Baarlen, P.2
de Greeff, A.3
Morrison, D.A.4
Smith, H.5
Wells, J.M.6
-
124
-
-
51849112875
-
Genome sequence of a Lancefield group C Streptococcus zooepidemicus strain causing epidemic nephritis: new information about an old disease
-
18716664, ..;:.
-
Beres SB, Sesso R, Pinto SWL, Hoe NP, Porcella SF, Deleo FR, et al. Genome sequence of a Lancefield group C Streptococcus zooepidemicus strain causing epidemic nephritis: new information about an old disease. PLoS ONE. 2008;3: e3026. doi: 10.1371/journal.pone.000302618716664
-
(2008)
PLoS ONE
, vol.3
, pp. e3026
-
-
Beres, S.B.1
Sesso, R.2
Pinto, S.W.L.3
Hoe, N.P.4
Porcella, S.F.5
Deleo, F.R.6
-
125
-
-
79955795335
-
CRISPR inhibition of prophage acquisition in Streptococcus pyogenes
-
21573110, ..;:.
-
Nozawa T, Furukawa N, Aikawa C, Watanabe T, Haobam B, Kurokawa K, et al. CRISPR inhibition of prophage acquisition in Streptococcus pyogenes. PLoS ONE. 2011;6: e19543. doi: 10.1371/journal.pone.001954321573110
-
(2011)
PLoS ONE
, vol.6
, pp. e19543
-
-
Nozawa, T.1
Furukawa, N.2
Aikawa, C.3
Watanabe, T.4
Haobam, B.5
Kurokawa, K.6
-
126
-
-
84875582587
-
The adaptation of temperate bacteriophages to their host genomes
-
23243039, .;:–.
-
Bobay L-M, Rocha EPC, Touchon M, The adaptation of temperate bacteriophages to their host genomes. Mol Biol Evol. 2013;30: 737–51. doi: 10.1093/molbev/mss27923243039
-
(2013)
Mol Biol Evol
, vol.30
, pp. 737-751
-
-
Bobay, L.-M.1
Rocha, E.P.C.2
Touchon, M.3
-
127
-
-
4744339973
-
Post-proteomic identification of a novel phage-encoded streptodornase, Sda1, in invasive M1T1 Streptococcus pyogenes
-
15458415, .;;:–.
-
Aziz RK, Ismail SA, Park H-W, Kotb M, Post-proteomic identification of a novel phage-encoded streptodornase, Sda1, in invasive M1T1 Streptococcus pyogenes. Mol Microbiol.; 2004;54: 184–197. 15458415
-
(2004)
Mol Microbiol.
, vol.54
, pp. 184-197
-
-
Aziz, R.K.1
Ismail, S.A.2
Park, H.-W.3
Kotb, M.4
-
128
-
-
0035861745
-
Purification and characterization of a Bacillus subtilis 168 nuclease, YokF, involved in chromosomal DNA degradation and cell death caused by thermal shock treatments
-
11584000, .;:–.
-
Sakamoto JJ, Sasaki M, Tsuchido T, Purification and characterization of a Bacillus subtilis 168 nuclease, YokF, involved in chromosomal DNA degradation and cell death caused by thermal shock treatments. J Biol Chem. 2001;276: 47046–51. doi: 10.1074/jbc.M10620520011584000
-
(2001)
J Biol Chem
, vol.276
, pp. 47046-47051
-
-
Sakamoto, J.J.1
Sasaki, M.2
Tsuchido, T.3
-
129
-
-
64049091702
-
A DNase encoded by integrated element CJIE1 Inhibits natural transformation of Campylobacter jejuni
-
19151136, ..;:–.
-
Gaasbeek EJ, Wagenaar JA, Guilhabert MR, Wösten MMSM, Van Putten JPM, Van Der Graaf-van Bloois L, et al. A DNase encoded by integrated element CJIE1 Inhibits natural transformation of Campylobacter jejuni. J Bacteriol. 2009;191: 2296–2306. doi: 10.1128/JB.01430-0819151136
-
(2009)
J Bacteriol
, vol.191
, pp. 2296-2306
-
-
Gaasbeek, E.J.1
Wagenaar, J.A.2
Guilhabert, M.R.3
Wösten, M.M.S.M.4
Van Putten, J.P.M.5
Van Der Graaf-van Bloois, L.6
-
130
-
-
75749136494
-
Nucleases encoded by the integrated elements CJIE2 and CJIE4 inhibit natural transformation of Campylobacter jejuni
-
20023031, .;;:–.
-
Gaasbeek EJ, Wagenaar JA, Guilhabert MR, van Putten JPM, Parker CT, van der Wal FJ, Nucleases encoded by the integrated elements CJIE2 and CJIE4 inhibit natural transformation of Campylobacter jejuni. J Bacteriol.; 2010;192: 936–941. doi: 10.1128/JB.00867-0920023031
-
(2010)
J Bacteriol.
, vol.192
, pp. 936-941
-
-
Gaasbeek, E.J.1
Wagenaar, J.A.2
Guilhabert, M.R.3
van Putten, J.P.M.4
Parker, C.T.5
van der Wal, F.J.6
-
131
-
-
84939856353
-
A globally distributed mobile genetic element inhibits natural transformation of Vibrio cholerae
-
26240317, .;:–.
-
Dalia AB, Seed KD, Calderwood SB, Camilli A, A globally distributed mobile genetic element inhibits natural transformation of Vibrio cholerae. Proc Natl Acad Sci. 2015;112: 10485–10490. doi: 10.1073/pnas.150909711226240317
-
(2015)
Proc Natl Acad Sci
, vol.112
, pp. 10485-10490
-
-
Dalia, A.B.1
Seed, K.D.2
Calderwood, S.B.3
Camilli, A.4
-
132
-
-
69849087746
-
Extensive DNA mimicry by the ArdA anti-restriction protein and its role in the spread of antibiotic resistance
-
19506028, ..;:–.
-
McMahon SA, Roberts GA, Johnson KA, Cooper LP, Liu H, White JH, et al. Extensive DNA mimicry by the ArdA anti-restriction protein and its role in the spread of antibiotic resistance. Nucleic Acids Res. 2009;37: 4887–4897. doi: 10.1093/nar/gkp47819506028
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 4887-4897
-
-
McMahon, S.A.1
Roberts, G.A.2
Johnson, K.A.3
Cooper, L.P.4
Liu, H.5
White, J.H.6
-
133
-
-
84872607723
-
Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system
-
23242138, .;:–.
-
Bondy-Denomy J, Pawluk A, Maxwell KL, Davidson AR, Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature. 2013;493: 429–32. doi: 10.1038/nature1172323242138
-
(2013)
Nature
, vol.493
, pp. 429-432
-
-
Bondy-Denomy, J.1
Pawluk, A.2
Maxwell, K.L.3
Davidson, A.R.4
-
134
-
-
84887295186
-
Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection
-
24130509, ..;:.
-
Croucher NJ, Mitchell AM, Gould KA, Inverarity D, Barquist L, Feltwell T, et al. Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection. PLoS Genet. 2013;9: e1003868. doi: 10.1371/journal.pgen.100386824130509
-
(2013)
PLoS Genet
, vol.9
, pp. e1003868
-
-
Croucher, N.J.1
Mitchell, A.M.2
Gould, K.A.3
Inverarity, D.4
Barquist, L.5
Feltwell, T.6
-
135
-
-
0017138601
-
Uniform nomenclature for bacterial plasmids: a proposal
-
.;:.
-
Novick RP, Clowes RC, Cohen SN, Curtiss R, Falkow S, Uniform nomenclature for bacterial plasmids: a proposal. Bacteriol Rev. 1976;40: 525.
-
(1976)
Bacteriol Rev
, vol.40
, pp. 525
-
-
Novick, R.P.1
Clowes, R.C.2
Cohen, S.N.3
Curtiss, R.4
Falkow, S.5
-
136
-
-
0033055030
-
A high incidence of prophage carriage among natural isolates of Streptococcus pneumoniae
-
10368133, .;:–.
-
Ramirez M, Severina E, Tomasz A, A high incidence of prophage carriage among natural isolates of Streptococcus pneumoniae. J Bacteriol. 1999;181: 3618–3625. 10368133
-
(1999)
J Bacteriol
, vol.181
, pp. 3618-3625
-
-
Ramirez, M.1
Severina, E.2
Tomasz, A.3
-
137
-
-
77951104433
-
Bacteriophage resistance mechanisms
-
20348932, .;:–.
-
Labrie SJ, Samson JE, Moineau S, Bacteriophage resistance mechanisms. Nat Rev Microbiol. 2010;8: 317–327. doi: 10.1038/nrmicro231520348932
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 317-327
-
-
Labrie, S.J.1
Samson, J.E.2
Moineau, S.3
-
138
-
-
84878735463
-
Population genomics of post-vaccine changes in pneumococcal epidemiology
-
23644493, ..;:–.
-
Croucher NJ, Finkelstein JA, Pelton SI, Mitchell PK, Lee GM, Parkhill J, et al. Population genomics of post-vaccine changes in pneumococcal epidemiology. Nat Genet. 2013;45: 656–663. doi: 10.1038/ng.262523644493
-
(2013)
Nat Genet
, vol.45
, pp. 656-663
-
-
Croucher, N.J.1
Finkelstein, J.A.2
Pelton, S.I.3
Mitchell, P.K.4
Lee, G.M.5
Parkhill, J.6
-
139
-
-
84926308364
-
Selective and Genetic Constraints on Pneumococcal Serotype Switching
-
25826208, ..;;:.
-
Croucher NJ, Kagedan L, Thompson CM, Parkhill J, Bentley SD, Finkelstein JA, et al. Selective and Genetic Constraints on Pneumococcal Serotype Switching. PLoS Genet.; 2015;11: e1005095. doi: 10.1371/journal.pgen.100509525826208
-
(2015)
PLoS Genet
, vol.11
, pp. e1005095
-
-
Croucher, N.J.1
Kagedan, L.2
Thompson, C.M.3
Parkhill, J.4
Bentley, S.D.5
Finkelstein, J.A.6
-
140
-
-
84871366407
-
Microevolutionary analysis of Clostridium difficile genomes to investigate transmission
-
23259504, ..;:.
-
Didelot X, Eyre DW, Cule M, Ip CL, Ansari MA, Griffiths D, et al. Microevolutionary analysis of Clostridium difficile genomes to investigate transmission. Genome Biol. 2012;13: R118. doi: 10.1186/gb-2012-13-12-r11823259504
-
(2012)
Genome Biol
, vol.13
, pp. R118
-
-
Didelot, X.1
Eyre, D.W.2
Cule, M.3
Ip, C.L.4
Ansari, M.A.5
Griffiths, D.6
-
141
-
-
77952299957
-
Prodigal: prokaryotic gene recognition and translation initiation site identification
-
20211023, .;:.
-
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ, Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics. 2010;11: 119. doi: 10.1186/1471-2105-11-11920211023
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.L.2
Locascio, P.F.3
Land, M.L.4
Larimer, F.W.5
Hauser, L.J.6
-
142
-
-
62649124308
-
Spain23F ST81
-
19114491, ..;:–.
-
Croucher NJ, Walker D, Romero P, Lennard N, Paterson GK, Bason NC, et al. Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81. J Bacteriol. 2009;191: 1480–1489. doi: 10.1128/jb.01343-0819114491
-
(2009)
J Bacteriol
, vol.191
, pp. 1480-1489
-
-
Croucher, N.J.1
Walker, D.2
Romero, P.3
Lennard, N.4
Paterson, G.K.5
Bason, N.C.6
-
143
-
-
74049108922
-
BLAST+: architecture and applications
-
20003500, ..;:.
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, et al. BLAST+: architecture and applications. BMC Bioinformatics. 2009;10: 421. doi: 10.1186/1471-2105-10-42120003500
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
-
144
-
-
67649884743
-
Fast and accurate short read alignment with Burrows–Wheeler transform
-
19451168, .;:–.
-
Li H, Durbin R, Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics. 2009;25: 1754–1760. doi: 10.1093/bioinformatics/btp32419451168
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
145
-
-
84923323708
-
Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape
-
24916661, ..;;:–.
-
Croucher NJ, Chewapreecha C, Hanage WP, Harris SR, McGee L, van der Linden M, et al. Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape. Genome Biol Evol.; 2014;6: 1589–1602. doi: 10.1093/gbe/evu12024916661
-
(2014)
Genome Biol Evol
, vol.6
, pp. 1589-1602
-
-
Croucher, N.J.1
Chewapreecha, C.2
Hanage, W.P.3
Harris, S.R.4
McGee, L.5
van der Linden, M.6
-
146
-
-
77954238055
-
Efficient construction of an assembly string graph using the FM-index
-
20529929, .;:–.
-
Simpson JT, Durbin R, Efficient construction of an assembly string graph using the FM-index. Bioinformatics. 2010;26: i367–73. doi: 10.1093/bioinformatics/btq21720529929
-
(2010)
Bioinformatics
, vol.26
, pp. 73-367
-
-
Simpson, J.T.1
Durbin, R.2
-
147
-
-
84962188356
-
-
Costa GG, Vidal RO, Carazzolle MF. Zorro [Internet]. 2011.
-
Costa GG, Vidal RO, Carazzolle MF. Zorro [Internet]. 2011. http://www.lge.ibi.unicamp.br/zorro/
-
-
-
-
148
-
-
56649123520
-
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
-
18845581, .. 2008/10/11 ed.;:–.
-
Carver T, Berriman M, Tivey A, Patel C, Bohme U, Barrell BG, et al. Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics. 2008/10/11 ed. 2008;24: 2672–2676. doi: 10.1093/bioinformatics/btn52918845581
-
(2008)
Bioinformatics
, vol.24
, pp. 2672-2676
-
-
Carver, T.1
Berriman, M.2
Tivey, A.3
Patel, C.4
Bohme, U.5
Barrell, B.G.6
-
149
-
-
84962172200
-
-
Postingl H. SMALT [Internet]. 2012.
-
Postingl H. SMALT [Internet]. 2012. http://www.sanger.ac.uk/resources/software/smalt/
-
-
-
-
150
-
-
0036226603
-
BLAT—the BLAST-like alignment tool
-
11932250, .;:–.
-
Kent WJ, BLAT—the BLAST-like alignment tool. Genome Res. 2002;12: 656–664. doi: 10.1101/gr.22920211932250
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
151
-
-
79951530130
-
Scaffolding pre-assembled contigs using SSPACE
-
21149342, . 2010/12/15 ed.;:–.
-
Boetzer M, Henkel C V, Jansen HJ, Butler D, Pirovano W, Scaffolding pre-assembled contigs using SSPACE. Bioinformatics. 2010/12/15 ed. 2011;27: 578–579. doi: 10.1093/bioinformatics/btq68321149342
-
(2011)
Bioinformatics
, vol.27
, pp. 578-579
-
-
Boetzer, M.1
Henkel, C.V.2
Jansen, H.J.3
Butler, D.4
Pirovano, W.5
-
152
-
-
33845613147
-
Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences
-
17062630, .;:–.
-
Fouts DE, Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences. Nucleic Acids Res. 2006;34: 5839–5851. 17062630
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5839-5851
-
-
Fouts, D.E.1
-
153
-
-
33845957666
-
Genome sequence of Avery’s virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6
-
17041037, ..;:–. JB.01148-06
-
Lanie JA, Ng WL, Kazmierczak KM, Andrzejewski TM, Davidsen TM, Wayne KJ, et al. Genome sequence of Avery’s virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6. J Bacteriol. 2007;189: 38–51. JB.01148-06 17041037
-
(2007)
J Bacteriol
, vol.189
, pp. 38-51
-
-
Lanie, J.A.1
Ng, W.L.2
Kazmierczak, K.M.3
Andrzejewski, T.M.4
Davidsen, T.M.5
Wayne, K.J.6
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