메뉴 건너뛰기




Volumn 188, Issue 5, 2006, Pages 1999-2013

The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties

Author keywords

[No Author keywords available]

Indexed keywords

2 AMINOPHENOL; 3 CHLOROCATECHOL; 4 CHLOROCATECHOL; ANTHRANILATE HYDROXYLASE; ANTHRANILIC ACID; AROMATIC COMPOUND; CARRIER PROTEIN; CHLORINE DERIVATIVE; DIOXYGENASE; OXYGENASE; UNCLASSIFIED DRUG;

EID: 33644745555     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.188.5.1999-2013.2006     Document Type: Article
Times cited : (119)

References (71)
  • 2
    • 0029765614 scopus 로고    scopus 로고
    • Dynamics of denitrification activity of Paracoccus denitrificans in continuous culture during aerobic-anaerobic changes
    • Baumann, B., M. Snozzi, A. J. B. Zehnder, and J. R. van der Meer. 1996. Dynamics of denitrification activity of Paracoccus denitrificans in continuous culture during aerobic-anaerobic changes. J. Bacteriol. 178:4367-4374.
    • (1996) J. Bacteriol. , vol.178 , pp. 4367-4374
    • Baumann, B.1    Snozzi, M.2    Zehnder, A.J.B.3    Van Der Meer, J.R.4
  • 3
    • 0036062306 scopus 로고    scopus 로고
    • Genomic and functional analyses of SXT, an integrating antibiotic resistance gene transfer element derived from Vibrio choleras
    • Beaber, J. W., B. Hochhut, and M. K. Waldor. 2002. Genomic and functional analyses of SXT, an integrating antibiotic resistance gene transfer element derived from Vibrio choleras. J. Bacteriol. 184:4259-4269.
    • (2002) J. Bacteriol. , vol.184 , pp. 4259-4269
    • Beaber, J.W.1    Hochhut, B.2    Waldor, M.K.3
  • 4
    • 0031923751 scopus 로고    scopus 로고
    • Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics
    • Brosch, R., S. V. Gordon, A. Billault, T. Garnier, K. Eiglmeier, C. Soravito, B. G. Barrell, and S. T. Cole. 1998. Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics. Infect. Immun. 66:2221-2229.
    • (1998) Infect. Immun. , vol.66 , pp. 2221-2229
    • Brosch, R.1    Gordon, S.V.2    Billault, A.3    Garnier, T.4    Eiglmeier, K.5    Soravito, C.6    Barrell, B.G.7    Cole, S.T.8
  • 6
    • 0036425161 scopus 로고    scopus 로고
    • The ICESt1 element of Streptococcus thermophilus belongs to a large family of integrative and conjugative elements that exchange modules and change their specificity of integration
    • Burrus, V., G. Pavlovic, B. Decaris, and G. Guedon. 2002. The ICESt1 element of Streptococcus thermophilus belongs to a large family of integrative and conjugative elements that exchange modules and change their specificity of integration. Plasmid 48:77-97.
    • (2002) Plasmid , vol.48 , pp. 77-97
    • Burrus, V.1    Pavlovic, G.2    Decaris, B.3    Guedon, G.4
  • 7
    • 0041387546 scopus 로고    scopus 로고
    • Control of SXT integration and excision
    • Burrus, V., and M. K. Waldor. 2003. Control of SXT integration and excision. J. Bacteriol. 185:5045-5054.
    • (2003) J. Bacteriol. , vol.185 , pp. 5045-5054
    • Burrus, V.1    Waldor, M.K.2
  • 8
    • 2942689400 scopus 로고    scopus 로고
    • Shaping bacterial genomes with integrative and conjugative elements
    • Burrus, V., and M. K. Waldor. 2004. Shaping bacterial genomes with integrative and conjugative elements. Res. Microbiol. 155:376-386.
    • (2004) Res. Microbiol. , vol.155 , pp. 376-386
    • Burrus, V.1    Waldor, M.K.2
  • 10
    • 0141838905 scopus 로고    scopus 로고
    • Characterization and regulation of the genes for a novel anthranilate 1,2-dioxygenase from Burkholderia cepacia DBO1
    • Chang, H. K., P. Mohseni, and G. J. Zylstra. 2003. Characterization and regulation of the genes for a novel anthranilate 1,2-dioxygenase from Burkholderia cepacia DBO1. J. Bacteriol. 185:5871-5881.
    • (2003) J. Bacteriol. , vol.185 , pp. 5871-5881
    • Chang, H.K.1    Mohseni, P.2    Zylstra, G.J.3
  • 12
    • 0028128866 scopus 로고
    • Purification of the LysR family regulator, ClcR, and its interaction with the Pseudomonas putida clcABD chlorocatechol operon promoter
    • Coco, W. M., M. R. Parsek, and A. M. Chakrabarty. 1994. Purification of the LysR family regulator, ClcR, and its interaction with the Pseudomonas putida clcABD chlorocatechol operon promoter. J. Bacteriol. 176:5530-5533.
    • (1994) J. Bacteriol. , vol.176 , pp. 5530-5533
    • Coco, W.M.1    Parsek, M.R.2    Chakrabarty, A.M.3
  • 13
    • 8544244142 scopus 로고    scopus 로고
    • Concomitant reconstitution of TraI-catalyzed DNA transesterase and DNA helicase activity in vitro
    • Csitkovits, V. C., D. Dermic, and E. L. Zechner. 2004. Concomitant reconstitution of TraI-catalyzed DNA transesterase and DNA helicase activity in vitro. J. Biol. Chem. 279:45477-45484.
    • (2004) J. Biol. Chem. , vol.279 , pp. 45477-45484
    • Csitkovits, V.C.1    Dermic, D.2    Zechner, E.L.3
  • 15
    • 8744268521 scopus 로고    scopus 로고
    • Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons
    • Demaneche, S., C. Meyer, J. Micoud, M. Louwagie, J. C. Willison, and Y. Jouanneau. 2004. Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons. Appl. Environ. Microbiol. 70:6714-6725.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 6714-6725
    • Demaneche, S.1    Meyer, C.2    Micoud, J.3    Louwagie, M.4    Willison, J.C.5    Jouanneau, Y.6
  • 16
  • 17
    • 0016156623 scopus 로고
    • Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad
    • Dorn, E., M. Hellwig, W. Reineke, and H. J. Knackmuss. 1974. Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad. Arch. Microbiol. 99:61-70.
    • (1974) Arch. Microbiol. , vol.99 , pp. 61-70
    • Dorn, E.1    Hellwig, M.2    Reineke, W.3    Knackmuss, H.J.4
  • 18
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing, B., and P. Green. 1998. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8:175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Green, P.2
  • 19
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing, B., and P. Green. 1998. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8:186-198.
    • (1998) Genome Res. , vol.8 , pp. 186-198
    • Ewing, B.1    Green, P.2
  • 20
    • 0023374169 scopus 로고
    • Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation
    • Frantz, B., and A. M. Chakrabarty. 1987. Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation. Proc. Natl. Acad. Sci. USA 84:4460-4464.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 4460-4464
    • Frantz, B.1    Chakrabarty, A.M.2
  • 21
    • 0004217184 scopus 로고
    • Gerhardt, P., R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg, and G. B. Phillips (ed.). American Society for Microbiology, Washington, D.C.
    • Gerhardt, P., R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg, and G. B. Phillips (ed.). 1981. Manual of methods for general bacteriology. American Society for Microbiology, Washington, D.C.
    • (1981) Manual of Methods for General Bacteriology
  • 22
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence fishing
    • Gordon, D., C. Abajian, and P. Green. 1998. Consed: a graphical tool for sequence fishing. Genome Res. 8:195-202.
    • (1998) Genome Res. , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 23
    • 0035054380 scopus 로고    scopus 로고
    • Automated finishing with Autofinish
    • Gordon, D., C. Desmarais, and P. Green. 2001. Automated finishing with Autofinish. Genome Res. 11:614-625.
    • (2001) Genome Res. , vol.11 , pp. 614-625
    • Gordon, D.1    Desmarais, C.2    Green, P.3
  • 24
    • 0036933239 scopus 로고    scopus 로고
    • Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida
    • Created, A., L. Lambertsen, P. A. Williams, and C. M. Thomas. 2002. Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida. Environ. Microbiol. 4:856-871.
    • (2002) Environ. Microbiol. , vol.4 , pp. 856-871
    • Created, A.1    Lambertsen, L.2    Williams, P.A.3    Thomas, C.M.4
  • 25
    • 14644413601 scopus 로고    scopus 로고
    • A genomic island present along the bacterial chromosome of the Parachlamydiaceae UWE25, an obligate amoebal endosymbiont, encodes a potentially functional F-like conjugative DNA transfer system
    • [Online.] doi:10.1186/1471-2180-1184-1148
    • Greub, G., F. Collyn, L. Guy, and C. A. Roten. 2004. A genomic island present along the bacterial chromosome of the Parachlamydiaceae UWE25, an obligate amoebal endosymbiont, encodes a potentially functional F-like conjugative DNA transfer system. BMC Microbiol. 4:48 [Online.] doi:10.1186/1471-2180-1184-1148.
    • (2004) BMC Microbiol. , vol.4 , pp. 48
    • Greub, G.1    Collyn, F.2    Guy, L.3    Roten, C.A.4
  • 26
    • 28044463174 scopus 로고    scopus 로고
    • Genometric as an essential tool for the assembly of whole genome sequences: The example of the chromosome of Bifidobacterium longum NCC2705
    • [Online.] doi:10.1186/1471-2180-1185-1160
    • Guy, L., D. Karamata, P. Moreillon, and C.-A. H. Roten. 2005. Genometric as an essential tool for the assembly of whole genome sequences: the example of the chromosome of Bifidobacterium longum NCC2705. BMC Microbiol. 5:60 [Online.] doi:10.1186/1471-2180-1185-1160.
    • (2005) BMC Microbiol. , vol.5 , pp. 60
    • Guy, L.1    Karamata, D.2    Moreillon, P.3    Roten, C.-A.H.4
  • 27
    • 0030901705 scopus 로고    scopus 로고
    • Pathogenicity islands of virulent bacteria: Structure, function and impact on microbial evolution
    • Hacker, J., G. Blum-Oehler, I. Muhldorfer, and H. Tschape. 1997. Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution. Mol. Microbiol. 23:1089-1097.
    • (1997) Mol. Microbiol. , vol.23 , pp. 1089-1097
    • Hacker, J.1    Blum-Oehler, G.2    Muhldorfer, I.3    Tschape, H.4
  • 28
    • 0034980876 scopus 로고    scopus 로고
    • Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes
    • Hacker, J., and E. Carniel. 2001. Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes. EMBO Rep. 2:376-381.
    • (2001) EMBO Rep. , vol.2 , pp. 376-381
    • Hacker, J.1    Carniel, E.2
  • 30
    • 0035490822 scopus 로고    scopus 로고
    • Cloning, nucleotide sequencing, and functional analysis of a novel, mobile cluster of biodegradation genes from Pseudomonas aeruginosa strain JB2
    • Hickey, W. J., G. Sabat, A. S. Yuroff, A. R. Arment, and J. Perez-Lesher. 2001. Cloning, nucleotide sequencing, and functional analysis of a novel, mobile cluster of biodegradation genes from Pseudomonas aeruginosa strain JB2. Appl. Environ. Microbiol. 67:4603-1609.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4603-11609
    • Hickey, W.J.1    Sabat, G.2    Yuroff, A.S.3    Arment, A.R.4    Perez-Lesher, J.5
  • 31
    • 0041661967 scopus 로고    scopus 로고
    • Evolution of catabolic pathways for synthetic compounds: Bacterial pathways for degradation of 2,4-dinitrotoluene and nitrobenzene
    • Johnson, G. R., and J. C. Spain. 2003. Evolution of catabolic pathways for synthetic compounds: bacterial pathways for degradation of 2,4-dinitrotoluene and nitrobenzene. Appl. Microbiol. Biotechnol. 62:110-123.
    • (2003) Appl. Microbiol. Biotechnol. , vol.62 , pp. 110-123
    • Johnson, G.R.1    Spain, J.C.2
  • 32
    • 0028997975 scopus 로고
    • Evidence that operons tcb, tfd, and clc encode maleylacetate reductase, the fourth enzyme of the modified ortho pathway
    • Kasberg, T., D. L. Daubaras, A. M. Chakrabarty, D. Kinzelt, and W. Reineke. 1995. Evidence that operons tcb, tfd, and clc encode maleylacetate reductase, the fourth enzyme of the modified ortho pathway. J. Bacteriol. 177:3885-3889.
    • (1995) J. Bacteriol. , vol.177 , pp. 3885-3889
    • Kasberg, T.1    Daubaras, D.L.2    Chakrabarty, A.M.3    Kinzelt, D.4    Reineke, W.5
  • 33
    • 0347285389 scopus 로고    scopus 로고
    • Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C
    • Klockgether, J., O. Reva, K. Larbig, and B. Tummler. 2004. Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C. J. Bacteriol. 186:518-534.
    • (2004) J. Bacteriol. , vol.186 , pp. 518-534
    • Klockgether, J.1    Reva, O.2    Larbig, K.3    Tummler, B.4
  • 35
    • 0032997949 scopus 로고    scopus 로고
    • Dynamics of multigene expression during catabolic adaptation of Ralstonia eutropha JMP134 (pJP4) to the herbicide 2,4-dichlorophenoxyacetate
    • Leveau, J. H. J., F. König, H.-P. Füchslin, C. Werlen, and J. R. van der Meer. 1999. Dynamics of multigene expression during catabolic adaptation of Ralstonia eutropha JMP134 (pJP4) to the herbicide 2,4-dichlorophenoxyacetate. Mol. Microbiol. 33:396-406.
    • (1999) Mol. Microbiol. , vol.33 , pp. 396-406
    • Leveau, J.H.J.1    König, F.2    Füchslin, H.-P.3    Werlen, C.4    Van Der Meer, J.R.5
  • 36
    • 0034811709 scopus 로고    scopus 로고
    • Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP
    • Martinez, B., J. Tomkins, L. P. Wackett, R. Wing, and M. J. Sadowsky. 2001. Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP. J. Bacteriol. 183:5684-5697.
    • (2001) J. Bacteriol. , vol.183 , pp. 5684-5697
    • Martinez, B.1    Tomkins, J.2    Wackett, L.P.3    Wing, R.4    Sadowsky, M.J.5
  • 37
    • 11844253289 scopus 로고    scopus 로고
    • The F-plasmid TraI protein contains three functional domains required for conjugative DNA strand transfer
    • Matson, S. W., and H. Ragonese. 2005. The F-plasmid TraI protein contains three functional domains required for conjugative DNA strand transfer. J. Bacteriol. 187:697-706.
    • (2005) J. Bacteriol. , vol.187 , pp. 697-706
    • Matson, S.W.1    Ragonese, H.2
  • 39
    • 0024632140 scopus 로고
    • Cloning and expression in Escherichia coli of Pseudomonas strain LB400 genes encoding polychlorinated biphenyl degradation
    • Mondello, F. J. 1989. Cloning and expression in Escherichia coli of Pseudomonas strain LB400 genes encoding polychlorinated biphenyl degradation. J. Bacteriol. 171:1725-1732.
    • (1989) J. Bacteriol. , vol.171 , pp. 1725-1732
    • Mondello, F.J.1
  • 40
    • 0037345571 scopus 로고    scopus 로고
    • Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia
    • Müller, T. A., C. Werlen, J. Spain, and J. R. van der Meer. 2003. Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia. Environ. Microbiol. 5:163-173.
    • (2003) Environ. Microbiol. , vol.5 , pp. 163-173
    • Müller, T.A.1    Werlen, C.2    Spain, J.3    Van Der Meer, J.R.4
  • 41
    • 0037338581 scopus 로고    scopus 로고
    • Prokaryotic homologs of the eukaryotic 3-hydroxyanthranilate 3,4-dioxygenase and 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in the 2-nitrobenzoate degradation pathway of Pseudomonas fluorescens strain KU-7
    • Muraki, T., M. Taki, Y. Hasegawa, H. Iwaki, and P. C. Lau. 2003. Prokaryotic homologs of the eukaryotic 3-hydroxyanthranilate 3,4-dioxygenase and 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in the 2-nitrobenzoate degradation pathway of Pseudomonas fluorescens strain KU-7. Appl. Environ. Microbiol. 69:1564-1572.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1564-1572
    • Muraki, T.1    Taki, M.2    Hasegawa, Y.3    Iwaki, H.4    Lau, P.C.5
  • 42
    • 0034019603 scopus 로고    scopus 로고
    • A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715
    • Nishi, A., K. Tominaga, and K. Furukawa. 2000. A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715. J. Bacteriol. 182:1949-1955.
    • (2000) J. Bacteriol. , vol.182 , pp. 1949-1955
    • Nishi, A.1    Tominaga, K.2    Furukawa, K.3
  • 43
    • 12744278450 scopus 로고    scopus 로고
    • Impact of pathogenicity islands in bacterial diagnostics
    • Oelschlaeger, T. A., and J. Hacker. 2004. Impact of pathogenicity islands in bacterial diagnostics. APMIS 112:930-936.
    • (2004) APMIS , vol.112 , pp. 930-936
    • Oelschlaeger, T.A.1    Hacker, J.2
  • 44
    • 0000576769 scopus 로고
    • Degradation of 1,4-dichlorobenzene by constructed and enriched strains
    • Oltmanns, R. H., H. G. Rast, and W. Reineke. 1988. Degradation of 1,4-dichlorobenzene by constructed and enriched strains. Appl. Microbiol. Biotechnol. 28:609-616.
    • (1988) Appl. Microbiol. Biotechnol. , vol.28 , pp. 609-616
    • Oltmanns, R.H.1    Rast, H.G.2    Reineke, W.3
  • 45
    • 0034888748 scopus 로고    scopus 로고
    • Genetic and structural organization of the aminophenol catabolic operon and its implication for evolutionary process
    • Park, H. S., and H. S. Kim. 2001. Genetic and structural organization of the aminophenol catabolic operon and its implication for evolutionary process. J. Bacteriol. 183:5074-5081.
    • (2001) J. Bacteriol. , vol.183 , pp. 5074-5081
    • Park, H.S.1    Kim, H.S.2
  • 46
    • 0028565028 scopus 로고
    • Interaction of two LysR-type regulatory proteins CatR and ClcR with heterologous promoters: Functional and evolutionary implications
    • Parsek, M. R., S. M. McFall, D. L. Shinabarger, and A. M. Chakrabarty. 1994. Interaction of two LysR-type regulatory proteins CatR and ClcR with heterologous promoters: functional and evolutionary implications. Proc. Natl. Acad. Sci. USA 91:12393-12397.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 12393-12397
    • Parsek, M.R.1    McFall, S.M.2    Shinabarger, D.L.3    Chakrabarty, A.M.4
  • 47
    • 12444297480 scopus 로고    scopus 로고
    • The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1
    • Rabus, R., M. Kube, J. Hieder, A. Beck, K. Heitmann, F. Widdel, and R. Reinhardt. 2005. The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1. Arch. Microbiol. 183:27-36.
    • (2005) Arch. Microbiol. , vol.183 , pp. 27-36
    • Rabus, R.1    Kube, M.2    Hieder, J.3    Beck, A.4    Heitmann, K.5    Widdel, F.6    Reinhardt, R.7
  • 49
    • 0031751325 scopus 로고    scopus 로고
    • Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13
    • Ravatn, R., S. Studer, D. Springael, A. J. Zehnder, and J. R. van der Meer. 1998. Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13. J. Bacteriol. 180:4360-4369.
    • (1998) J. Bacteriol. , vol.180 , pp. 4360-4369
    • Ravatn, R.1    Studer, S.2    Springael, D.3    Zehnder, A.J.4    Van Der Meer, J.R.5
  • 50
    • 0031740749 scopus 로고    scopus 로고
    • Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. strain B13
    • Ravatn, R., S. Studer, A. J. Zehnder, and J. R. van der Meer. 1998. Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. strain B13. J. Bacteriol. 180:5505-5514.
    • (1998) J. Bacteriol. , vol.180 , pp. 5505-5514
    • Ravatn, R.1    Studer, S.2    Zehnder, A.J.3    Van Der Meer, J.R.4
  • 51
    • 0031745938 scopus 로고    scopus 로고
    • Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms
    • Ravatn, R., A. J. Zehnder, and J. R. van der Meer. 1998. Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms. Appl. Environ. Microbiol. 64:2126-2132.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2126-2132
    • Ravatn, R.1    Zehnder, A.J.2    Van Der Meer, J.R.3
  • 53
    • 1642475095 scopus 로고    scopus 로고
    • Pathogenicity islands in bacterial pathogenesis
    • Schmidt, H., and M. Hensel. 2004. Pathogenicity islands in bacterial pathogenesis. Clin. Microbiol. Rev. 17:14-56.
    • (2004) Clin. Microbiol. Rev. , vol.17 , pp. 14-56
    • Schmidt, H.1    Hensel, M.2
  • 54
    • 1242297803 scopus 로고    scopus 로고
    • A novel integrative and conjugative element (ICE) of Escherichia coli: The putative progenitor of the Yersinia high-pathogenicity island
    • Schubert, S., S. Dufke, J. Sorsa, and J. Heesemann. 2004. A novel integrative and conjugative element (ICE) of Escherichia coli: the putative progenitor of the Yersinia high-pathogenicity island. Mol. Microbiol. 51:837-848.
    • (2004) Mol. Microbiol. , vol.51 , pp. 837-848
    • Schubert, S.1    Dufke, S.2    Sorsa, J.3    Heesemann, J.4
  • 55
    • 0038782123 scopus 로고    scopus 로고
    • Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13
    • Sentchilo, V., R. Ravatn, C. Werlen, A. J. Zehnder, and J. R. van der Meer. 2003. Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13. J. Bacteriol. 185:4530-4538.
    • (2003) J. Bacteriol. , vol.185 , pp. 4530-4538
    • Sentchilo, V.1    Ravatn, R.2    Werlen, C.3    Zehnder, A.J.4    Van Der Meer, J.R.5
  • 56
    • 0038046819 scopus 로고    scopus 로고
    • Characterization of two alternative promoters for integrase expression in the clc genomic island of Pseudomonas sp. strain B13
    • Sentchilo, V., A. J. Zehnder, and J. R. van der Meer. 2003. Characterization of two alternative promoters for integrase expression in the clc genomic island of Pseudomonas sp. strain B13. Mol. Microbiol. 49:93-104.
    • (2003) Mol. Microbiol. , vol.49 , pp. 93-104
    • Sentchilo, V.1    Zehnder, A.J.2    Van Der Meer, J.R.3
  • 58
    • 0842303297 scopus 로고    scopus 로고
    • Horizontal gene transfer and microbial adaptation to xenobiotics: New types of mobile genetic elements and lessons from ecological studies
    • Springael, D., and E. M. Top. 2004. Horizontal gene transfer and microbial adaptation to xenobiotics: new types of mobile genetic elements and lessons from ecological studies. Trends Microbiol. 12:53-58.
    • (2004) Trends Microbiol. , vol.12 , pp. 53-58
    • Springael, D.1    Top, E.M.2
  • 61
    • 0033775055 scopus 로고    scopus 로고
    • Complete nucleotide sequence and functional analysis of the genes for 2-aminophenol metabolism from Pseudomonas sp. AP-3
    • Takenaka, S., S. Murakami, Y. J. Kim, and K. Aoki. 2000. Complete nucleotide sequence and functional analysis of the genes for 2-aminophenol metabolism from Pseudomonas sp. AP-3. Arch. Microbiol. 174:265-272.
    • (2000) Arch. Microbiol. , vol.174 , pp. 265-272
    • Takenaka, S.1    Murakami, S.2    Kim, Y.J.3    Aoki, K.4
  • 62
    • 0030990383 scopus 로고    scopus 로고
    • Novel genes encoding 2-aminophenol 1,6-dioxygenase from Pseudomonas species AP-3 growing on 2-aminophenol and catalytic properties of the purified enzyme
    • Takenaka, S., S. Murakami, R. Shinke, K. Hatakeyama, H. Yukawa, and K. Aoki. 1997. Novel genes encoding 2-aminophenol 1,6-dioxygenase from Pseudomonas species AP-3 growing on 2-aminophenol and catalytic properties of the purified enzyme. J. Biol. Chem. 272:14727-14732.
    • (1997) J. Biol. Chem. , vol.272 , pp. 14727-14732
    • Takenaka, S.1    Murakami, S.2    Shinke, R.3    Hatakeyama, K.4    Yukawa, H.5    Aoki, K.6
  • 63
    • 0038820052 scopus 로고    scopus 로고
    • The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds
    • Top, E. M., and D. Springael. 2003. The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds. Curr. Opin. Biotechnol. 14:262-269.
    • (2003) Curr. Opin. Biotechnol. , vol.14 , pp. 262-269
    • Top, E.M.1    Springael, D.2
  • 64
    • 0036152835 scopus 로고    scopus 로고
    • Mobile elements as a combination of functional modules
    • Toussaint, A., and C. Merlin. 2002. Mobile elements as a combination of functional modules. Plasmid 47:26-35.
    • (2002) Plasmid , vol.47 , pp. 26-35
    • Toussaint, A.1    Merlin, C.2
  • 65
    • 0038018390 scopus 로고    scopus 로고
    • The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids
    • Toussaint, A., C. Merlin, S. Monchy, M. A. Benotmane, R. Leplae, M. Mergeay, and D. Springael. 2003. The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids. Appl. Environ. Microbiol. 69:4837-4845.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4837-4845
    • Toussaint, A.1    Merlin, C.2    Monchy, S.3    Benotmane, M.A.4    Leplae, R.5    Mergeay, M.6    Springael, D.7
  • 66
    • 3042826882 scopus 로고    scopus 로고
    • Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways
    • Trefault, N., R. de la Iglesia, A. M. Molina, M. Manzano, T. Ledger, D. Pérez-Pantoja, M. A. Sánchez, M. Stuardo, and B. Gonzàlez. 2004. Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways. Environ. Microbiol. 6:655-668.
    • (2004) Environ. Microbiol. , vol.6 , pp. 655-668
    • Trefault, N.1    De La Iglesia, R.2    Molina, A.M.3    Manzano, M.4    Ledger, T.5    Pérez-Pantoja, D.6    Sánchez, M.A.7    Stuardo, M.8    Gonzàlez, B.9
  • 67
    • 0035096460 scopus 로고    scopus 로고
    • The dc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases
    • van der Meer, J. R., R. Ravatn, and V. Sentchilo. 2001. The dc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases. Arch. Microbiol. 175:79-85.
    • (2001) Arch. Microbiol. , vol.175 , pp. 79-85
    • Van Der Meer, J.R.1    Ravatn, R.2    Sentchilo, V.3
  • 68
    • 0038504021 scopus 로고    scopus 로고
    • Genomic islands and the evolution of catabolic pathways in bacteria
    • van der Meer, J. R., and V. Sentchilo. 2003. Genomic islands and the evolution of catabolic pathways in bacteria. Curr. Opin. Biotechnol. 14:248-254.
    • (2003) Curr. Opin. Biotechnol. , vol.14 , pp. 248-254
    • Van Der Meer, J.R.1    Sentchilo, V.2
  • 69
    • 6044272942 scopus 로고    scopus 로고
    • The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradation
    • Vedler, E., M. Vahter, and A. Heinaru. 2004. The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradation. J. Bacteriol. 186:7161-7174.
    • (2004) J. Bacteriol. , vol.186 , pp. 7161-7174
    • Vedler, E.1    Vahter, M.2    Heinaru, A.3
  • 70
    • 0023156844 scopus 로고
    • Molecular cloning and expression of the 3-chlorobenzoate-degrading genes from Pseudomonas sp. strain B13
    • Weisshaar, M.-P., F. C. H. Franklin, and W. Reineke. 1987. Molecular cloning and expression of the 3-chlorobenzoate-degrading genes from Pseudomonas sp. strain B13. J. Bacteriol. 169:394-402.
    • (1987) J. Bacteriol. , vol.169 , pp. 394-402
    • Weisshaar, M.-P.1    Franklin, F.C.H.2    Reineke, W.3
  • 71
    • 0029391189 scopus 로고
    • Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium
    • Zhou, J. Z., and J. M. Tiedje. 1995. Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium. Mol. Ecol. 4:613-618.
    • (1995) Mol. Ecol. , vol.4 , pp. 613-618
    • Zhou, J.Z.1    Tiedje, J.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.