-
1
-
-
0026586392
-
Evidence for a second conserved arginine residue in the integrase family of recombination proteins
-
Abremski, K. E., and R. H. Hoess. 1992. Evidence for a second conserved arginine residue in the integrase family of recombination proteins. Protein Eng. 5:87-91.
-
(1992)
Protein Eng.
, vol.5
, pp. 87-91
-
-
Abremski, K.E.1
Hoess, R.H.2
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0036723852
-
A conjugative integrating mosaic comprised of phage, plasmid, and transposon elements
-
Boltner, D., C. MacMahon, J. T. Pembroke, and A. M. Osborn. 2002. A conjugative integrating mosaic comprised of phage, plasmid, and transposon elements. J. Bacteriol. 184:5158-5169.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 5158-5169
-
-
Boltner, D.1
MacMahon, C.2
Pembroke, J.T.3
Osborn, A.M.4
-
4
-
-
0036439064
-
Conjugative transposons: The tip of the iceberg
-
Burrus, V., G. Pavlovic, B. Decaris, and G. Guedon. 2002. Conjugative transposons: the tip of the iceberg. Mol. Microbiol. 46:601-610.
-
(2002)
Mol. Microbiol.
, vol.46
, pp. 601-610
-
-
Burrus, V.1
Pavlovic, G.2
Decaris, B.3
Guedon, G.4
-
5
-
-
2442483942
-
Genetic evidence of a coupling role for the TraG protein family in bacterial conjugation
-
a. Cabezon, E., J. I. Sastre, and F. de la Cruz. 1997. Genetic evidence of a coupling role for the TraG protein family in bacterial conjugation. Mol. Gen. Genet. 254:400-406.
-
(1997)
Mol. Gen. Genet.
, vol.254
, pp. 400-406
-
-
Cabezon, E.1
Sastre, J.I.2
De la Cruz, F.3
-
6
-
-
0029881189
-
Regulatory noise in prokaryotic promoters: How bacteria learn to respond to novel environmental signals
-
de Lorenzo, V., and J. Perez-Martin. 1996. Regulatory noise in prokaryotic promoters: how bacteria learn to respond to novel environmental signals. Mol. Microbiol. 19:1177-1184.
-
(1996)
Mol. Microbiol.
, vol.19
, pp. 1177-1184
-
-
De Lorenzo, V.1
Perez-Martin, J.2
-
7
-
-
0019415205
-
Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of "conjugal" transfer in the absence of a conjugative plasmid
-
Franke, A. E., and D. B. Clewell. 1981. Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of "conjugal" transfer in the absence of a conjugative plasmid. J. Bacteriol. 145:494-502.
-
(1981)
J. Bacteriol.
, vol.145
, pp. 494-502
-
-
Franke, A.E.1
Clewell, D.B.2
-
8
-
-
0033861269
-
Plasmid and chromosome partitioning: Surprises from phylogeny
-
Gerdes, K., J. Moller-Jensen, and R. Bugge Jensen. 2000. Plasmid and chromosome partitioning: surprises from phylogeny. Mol. Microbiol. 37:455-466.
-
(2000)
Mol. Microbiol.
, vol.37
, pp. 455-466
-
-
Gerdes, K.1
Moller-Jensen, J.2
Bugge Jensen, R.3
-
9
-
-
0037246060
-
ASAP, a systematic annotation package for community analysis of genomes
-
Glasner, J. D., P. Liss, G. Plunkett III, A. Darling, T. Prasad, M. Rusch, A. Byrnes, M. Gilson, B. Biehl, F. R. Blattner, and N. T. Perna. 2003. ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31:147-151.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 147-151
-
-
Glasner, J.D.1
Liss, P.2
Plunkett G. III3
Darling, A.4
Prasad, T.5
Rusch, M.6
Byrnes, A.7
Gilson, M.8
Biehl, B.9
Blattner, F.R.10
Perna, N.T.11
-
10
-
-
0036217298
-
Structure and role of coupling proteins in conjugal DNA transfer
-
Gomis-Ruth, F. X., F. de la Cruz, and M. Coll. 2002. Structure and role of coupling proteins in conjugal DNA transfer. Res. Microbiol. 153:199-204.
-
(2002)
Res. Microbiol.
, vol.153
, pp. 199-204
-
-
Gomis-Ruth, F.X.1
De la Cruz, F.2
Coll, M.3
-
11
-
-
0034813331
-
Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp. nov., Ralstonia metallidurans sp. nov. and Ralstonia basilensis Steinle et al. 1998 emend
-
Goris, J., P. De Vos, T. Coenye, B. Hoste, D. Janssens, H. Brim, L. Diels, M. Mergeay, K. Kersters, and P. Vandamme. 2001. Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp. nov., Ralstonia metallidurans sp. nov. and Ralstonia basilensis Steinle et al. 1998 emend. Int. J. Syst. Evol. Microbiol. 51:1773-1782.
-
(2001)
Int. J. Syst. Evol. Microbiol.
, vol.51
, pp. 1773-1782
-
-
Goris, J.1
De Vos, P.2
Coenye, T.3
Hoste, B.4
Janssens, D.5
Brim, H.6
Diels, L.7
Mergeay, M.8
Kersters, K.9
Vandamme, P.10
-
12
-
-
0034980876
-
Ecological fitness, genomic islands, and bacterial pathogenicity: A Darwinian view of the evolution of microbes
-
Hacker, J., and E. Carniel. 2001. Ecological fitness, genomic islands, and bacterial pathogenicity: a Darwinian view of the evolution of microbes. EMBO Rep. 2:376-381.
-
(2001)
EMBO Rep.
, vol.2
, pp. 376-381
-
-
Hacker, J.1
Carniel, E.2
-
13
-
-
0034978233
-
Pathogenicity islands: The tip of the iceberg
-
Hentschel, U., and J. Hacker. 2001. Pathogenicity islands: the tip of the iceberg. Microbes Infect. 3:545-548.
-
(2001)
Microbes Infect.
, vol.3
, pp. 545-548
-
-
Hentschel, U.1
Hacker, J.2
-
14
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones, D. T., W. R. Taylor, and J. M. Thornton. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biol. Sci. 8:275-282.
-
(1992)
Comput. Appl. Biol. Sci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
15
-
-
0036683920
-
Tying rings for sex
-
Kalkum, M., R. Eisenbrandt, R. Lurz, and E. Lanka. 2002. Tying rings for sex. Trends Microbiol. 10:382-387.
-
(2002)
Trends Microbiol.
, vol.10
, pp. 382-387
-
-
Kalkum, M.1
Eisenbrandt, R.2
Lurz, R.3
Lanka, E.4
-
16
-
-
0041891932
-
Genus III, azotobacter beijerinck 1901
-
D. R. Boone and R. W. Castenholz (ed.). Springer-Verlag, New York, N.Y.
-
Kennedy, C., P. Rudnick, M. L. MacDonald, and T. Melton. 2001. Genus III, Azotobacter Beijerinck 1901. In D. R. Boone and R. W. Castenholz (ed.), Bergey's manual of systematic bacteriology, 2nd ed., vol. 1. Springer-Verlag, New York, N.Y.
-
(2001)
Bergey's Manual of Systematic Bacteriology, 2nd Ed.
, vol.1
-
-
Kennedy, C.1
Rudnick, P.2
MacDonald, M.L.3
Melton, T.4
-
17
-
-
0024562664
-
Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp, strain KKS102
-
Kimbara, K., T. Hashimoto, M. Fukuda, T. Koana, M. Takagi, M. Oishi, and K. Yano. 1989. Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp, strain KKS102. J. Bacteriol. 171:2740-2747.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 2740-2747
-
-
Kimbara, K.1
Hashimoto, T.2
Fukuda, M.3
Koana, T.4
Takagi, M.5
Oishi, M.6
Yano, K.7
-
18
-
-
50449147866
-
Transduction of linked genetic characters of the host by bacteriophage P1
-
Lennox, E. S. 1955. Transduction of linked genetic characters of the host by bacteriophage P1. Virology 1:190-206.
-
(1955)
Virology
, vol.1
, pp. 190-206
-
-
Lennox, E.S.1
-
19
-
-
0026735990
-
Modulation of DNA supercoiling activity of Escherichia coli DNA gyrase by F plasmid proteins: Antagonistic actions of LetA (CcdA) and LetD (CcdB) proteins
-
Maki, S., S. Takiguchi, T. Miki, and T. Horiuchi. 1992. Modulation of DNA supercoiling activity of Escherichia coli DNA gyrase by F plasmid proteins: antagonistic actions of LetA (CcdA) and LetD (CcdB) proteins. J. Biol. Chem. 267:12244-12251.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 12244-12251
-
-
Maki, S.1
Takiguchi, S.2
Miki, T.3
Horiuchi, T.4
-
20
-
-
0031018281
-
Organisation of the bph gene cluster of transposon Tn4371 encoding enzymes for the degradation of biphenyl and 4-chlorobiphenyl
-
Merlin, C., D. Springael, M. Mergeay, and A. Toussaint. 1997. Organisation of the bph gene cluster of transposon Tn4371 encoding enzymes for the degradation of biphenyl and 4-chlorobiphenyl. Mol. Gen. Genet. 253:499-506.
-
(1997)
Mol. Gen. Genet.
, vol.253
, pp. 499-506
-
-
Merlin, C.1
Springael, D.2
Mergeay, M.3
Toussaint, A.4
-
21
-
-
0032905533
-
Tn4371: A modular structure encoding a phage-like integrase, a Pseudomonas-like catabolic pathway and RP4/Ti-like transfer
-
Merlin, C., D. Springael, and A. Toussaint. 1999. Tn4371: a modular structure encoding a phage-like integrase, a Pseudomonas-like catabolic pathway and RP4/Ti-like transfer. Plasmid 41:40-54.
-
(1999)
Plasmid
, vol.41
, pp. 40-54
-
-
Merlin, C.1
Springael, D.2
Toussaint, A.3
-
22
-
-
0033384571
-
A GntR-like negative regulator of transposon Tn4371 biphenyl degradation genes
-
Mouz, S., C. Merlin, D. Springael, and A. Toussaint. 1999. A GntR-like negative regulator of transposon Tn4371 biphenyl degradation genes. Mol. Gen. Genet. 262:790-799.
-
(1999)
Mol. Gen. Genet.
, vol.262
, pp. 790-799
-
-
Mouz, S.1
Merlin, C.2
Springael, D.3
Toussaint, A.4
-
23
-
-
0034601689
-
Expression of the bph genes involved in biphenyl/PCB degradation in Pseudomonas sp. KKS102 induced by the biphenyl degradation intermediate, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid
-
Ohtsubo, Y., Y. Nagata, K. Kimbara, M. Takagi, and A. Ohta. 2000. Expression of the bph genes involved in biphenyl/PCB degradation in Pseudomonas sp. KKS102 induced by the biphenyl degradation intermediate, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. Gene 256:223-228.
-
(2000)
Gene
, vol.256
, pp. 223-228
-
-
Ohtsubo, Y.1
Nagata, Y.2
Kimbara, K.3
Takagi, M.4
Ohta, A.5
-
24
-
-
0027412028
-
Conjugation factor of Agrobacterium tumefaciens regulates Ti plasmid transfer by autoinduction
-
Piper, K., S. Beck von Bodman, and S. Farrand. 1993. Conjugation factor of Agrobacterium tumefaciens regulates Ti plasmid transfer by autoinduction. Nature 362:448-450.
-
(1993)
Nature
, vol.362
, pp. 448-450
-
-
Piper, K.1
Beck von Bodman, S.2
Farrand, S.3
-
25
-
-
0035725238
-
The integrative element pSAM2 from Streptomyces: Kinetics and mode of conjugal transfer
-
Possoz, C., C. Ribard, J. Gagnat, J. L. Pernodet, and M. Guerineau. 2001. The integrative element pSAM2 from Streptomyces: kinetics and mode of conjugal transfer. Mol. Microbiol. 42:159-166.
-
(2001)
Mol. Microbiol.
, vol.42
, pp. 159-166
-
-
Possoz, C.1
Ribard, C.2
Gagnat, J.3
Pernodet, J.L.4
Guerineau, M.5
-
26
-
-
0021795611
-
Cloning of genes encoding pectolytic enzymes from a genomic library of the phytopathogenic bacterium, Erwinia chrysanthemi
-
Reverchon, S., N. Hugouvieux-Cotte-Pattat, and J. Robert-Baudouy. 1985. Cloning of genes encoding pectolytic enzymes from a genomic library of the phytopathogenic bacterium, Erwinia chrysanthemi. Gene 35:121-130.
-
(1985)
Gene
, vol.35
, pp. 121-130
-
-
Reverchon, S.1
Hugouvieux-Cotte-Pattat, N.2
Robert-Baudouy, J.3
-
27
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
28
-
-
0037203829
-
Genome sequence of the plant pathogen Ralstonia solanacearum
-
Salanoubat, M., S. Genin, F. Artiguenave, J. Gouzy, T. S. Mangeno, M. Arlat, A. Billault, P. Brottier, J. C. Camus, L. Cattolico, M. Chandler, N. Choisne, C. Claudel-Renard, S. Cunnac, N. Demange, C. Gaspin, M. Lavie, A. Moisan, C. Robert, W. Saurin, T. Schiex, P. Siguier, P. Thebault, M. Whalen, P. Wincker, M. Levy, J. Weissenbach, and B. C. A. Boucher. 2002. Genome sequence of the plant pathogen Ralstonia solanacearum. Nature 415:497-502.
-
(2002)
Nature
, vol.415
, pp. 497-502
-
-
Salanoubat, M.1
Genin, S.2
Artiguenave, F.3
Gouzy, J.4
Mangeno, T.S.5
Arlat, M.6
Billault, A.7
Brottier, P.8
Camus, J.C.9
Cattolico, L.10
Chandler, M.11
Choisne, N.12
Claudel-Renard, C.13
Cunnac, S.14
Demange, N.15
Gaspin, C.16
Lavie, M.17
Moisan, A.18
Robert, C.19
Saurin, W.20
Schiex, T.21
Siguier, P.22
Thebault, P.23
Whalen, M.24
Wincker, P.25
Levy, M.26
Weissenbach, J.27
Boucher, B.C.A.28
more..
-
29
-
-
0028889420
-
Conjugative transposons: An unusual and diverse set of integrated gene transfer elements
-
Salyers, A. A., A. M. Stevens, and L. Y. Li. 1995. Conjugative transposons: an unusual and diverse set of integrated gene transfer elements. Microbiol. Rev. 59:579-590.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 579-590
-
-
Salyers, A.A.1
Stevens, A.M.2
Li, L.Y.3
-
30
-
-
0023500760
-
Excision and integration of a self-transmissible replicon of Streptomyces ambofaciens
-
Simonet, J. M., F. Boccard, J. L. Pernodet, J. Gagnat, and M. Guerineau. 1987. Excision and integration of a self-transmissible replicon of Streptomyces ambofaciens. Gene 59:137-144.
-
(1987)
Gene
, vol.59
, pp. 137-144
-
-
Simonet, J.M.1
Boccard, F.2
Pernodet, J.L.3
Gagnat, J.4
Guerineau, M.5
-
31
-
-
0028672053
-
Transfer and expression of PCB-degradative genes into heavy metal resistant Alcaligenes eutrophus strains
-
Springael, D., L. Diels, and M. Mergeay. 1994. Transfer and expression of PCB-degradative genes into heavy metal resistant Alcaligenes eutrophus strains. Biodegradation 5:343-357.
-
(1994)
Biodegradation
, vol.5
, pp. 343-357
-
-
Springael, D.1
Diels, L.2
Mergeay, M.3
-
32
-
-
0027404658
-
Identification of a catabolic transposon, Tn4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5
-
Springael, D., S. Kreps, and M. Mergeay. 1993. Identification of a catabolic transposon, Tn4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5. J. Bacteriol. 175:1674-1681.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 1674-1681
-
-
Springael, D.1
Kreps, S.2
Mergeay, M.3
-
33
-
-
0035166827
-
Occurrence of Tn4371-related mobile elements and sequences in (chloro) biphenyl-degrading bacteria
-
a. Springael, D., A. Ryngaert, C. Merlin, A. Toussaint, and M. Mergeay. 2001. Occurrence of Tn4371-related mobile elements and sequences in (chloro) biphenyl-degrading bacteria. Appl. Environ. Microbiol. 67:42-50.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 42-50
-
-
Springael, D.1
Ryngaert, A.2
Merlin, C.3
Toussaint, A.4
Mergeay, M.5
-
34
-
-
0023506006
-
Molecular characterization of cloned avirulence genes from race 0 and race 1 of Pseudomonas syringae pv. glycinea
-
Staskawicz, B., D. Dahlbeck, N. Keen, and C. Napoli. 1987. Molecular characterization of cloned avirulence genes from race 0 and race 1 of Pseudomonas syringae pv. glycinea. J. Bacteriol. 169:5789-5794.
-
(1987)
J. Bacteriol.
, vol.169
, pp. 5789-5794
-
-
Staskawicz, B.1
Dahlbeck, D.2
Keen, N.3
Napoli, C.4
-
35
-
-
0032574728
-
Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene
-
Sullivan, J. T., and C. W. Ronson. 1998. Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene. Proc. Natl. Acad. Sci. USA 95:5145-5149.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 5145-5149
-
-
Sullivan, J.T.1
Ronson, C.W.2
-
36
-
-
0035096460
-
The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases
-
van der Meer, J. R., R. Ravatn, and V. Sentchillo. 2001. The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases. Arch. Microbiol. 175:785-799.
-
(2001)
Arch. Microbiol.
, vol.175
, pp. 785-799
-
-
Van der Meer, J.R.1
Ravatn, R.2
Sentchillo, V.3
-
37
-
-
0029050811
-
A conjugation-like mechanism for prespore chromosome partitioning during sporulation in Bacillus subtilis
-
Wu, L. J., P. J. Lewis, R. Allmansberger, P. M. Hauser, and J. Errington. 1995. A conjugation-like mechanism for prespore chromosome partitioning during sporulation in Bacillus subtilis. Genes Dev. 9:1316-1326.
-
(1995)
Genes Dev.
, vol.9
, pp. 1316-1326
-
-
Wu, L.J.1
Lewis, P.J.2
Allmansberger, R.3
Hauser, P.M.4
Errington, J.5
-
38
-
-
0002378304
-
Conjugative-DNA transfer processes
-
C. M. Thomas (ed.). Harwood Academic Publishers, Amsterdam, The Netherlands
-
Zechner, E. L., F. de la Cruz, R. Eisenbrandt, A. M. Grahn, G. Koraimann, E. Lanka, G. Muth, W. Pansegrau, C. M. Thomas, B. M. Wilkins, and Z. M. Zatika. 2002. Conjugative-DNA transfer processes, p. 87-174. In C. M. Thomas (ed.), The horizontal gene pool: bacterial plasmids and gene spread. Harwood Academic Publishers, Amsterdam, The Netherlands.
-
(2002)
The Horizontal Gene Pool: Bacterial Plasmids and Gene Spread
, pp. 87-174
-
-
Zechner, E.L.1
De la Cruz, F.2
Eisenbrandt, R.3
Grahn, A.M.4
Koraimann, G.5
Lanka, E.6
Muth, G.7
Pansegrau, W.8
Thomas, C.M.9
Wilkins, B.M.10
Zatika, Z.M.11
|