IntDOT interactions with core- and arm-type sites of the conjugative transposon CTnDOT

Journal of Bacteriology

Volumn 189, Issue 7, 2007, Pages 2692-2701

  DiChiara, Jeanne M ^a,b   Mattis, Aras N ^a   Gardner, Jeffrey F ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b WADSWORTH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID DERIVATIVE; DEOXYRIBONUCLEASE I; NUCLEOPROTEIN; PROTEIN CTNDOT; PROTEIN INTDOT; RECOMBINASE; TYROSINE; UNCLASSIFIED DRUG;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTEROIDES; CARBOXY TERMINAL SEQUENCE; CATALYSIS; CONJUGATION; DNA DETERMINATION; DNA FOOTPRINTING; DNA RECOMBINATION; DNA STRUCTURE; ENZYME ACTIVE SITE; ENZYME SPECIFICITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; PROTEIN PROTEIN INTERACTION; TRANSPOSON;

BACTEROIDES; BASE SEQUENCE; CONJUGATION, GENETIC; DEOXYRIBONUCLEASE I; DNA FOOTPRINTING; DNA PRIMERS; DNA TRANSPOSABLE ELEMENTS; ESCHERICHIA COLI; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION;

BACTEROIDES; SYNAPSIS;

EID: 34147157115     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01796-06     Document Type: Article

References (20)

1. Azaro, M. A., and A. Landy. 2002. λ Integrase and the λ Int family, p. 118-148. In N. L. Craig, R. Craig, M. Gellert, and A. M. Lambowitz (ed.), Mobile DNA II. ASM Press, Washington, DC.
2. Cheng, Q., B. J. Paszkiet, N. B. Shoemaker, J. F. Gardner, and A. A. Salyers. 2000. Integration and excision of a Bacteroides conjugative transposon, CTnDOT. J. Bacteriol. 182:4035-4043.
3. Cheng, Q., N. Wesslund, N. B. Shoemaker, A. A. Salvers, and J. F. Gardner. 2002. Development of an in vitro integration assay for the Bacteroides conjugative transposon CTnDOT. J. Bacteriol. 184:4829-4837.
4. DiChiara, J. M., A. A. Salyers, and J. F. Gardner. 2005. In vitro analysis of sequence requirements for the excision reaction of the Bacteroides conjugative transposon, CTnDOT. Mol. Microbiol. 56:1035-1048.
5. Johnson, R. C., L. Johnson, J. W. Schmidt, and J. F. Gardner. 2004. Major nucleoid proteins in the structure and function of the Escherichia coli chromosome, p. 65-134. In N. P. Higgins (ed.). The bacterial chromosome. ASM Press, Washington, DC.
6. Kim, S., L. Moitoso de Vargas, S. E. Nunes-Duby, and A. Landy. 1990. Mapping of a higher order protein-DNA complex: two kinds of long-range interactions in lambda attL. Cell 63:773-781.
7. Kim, S., and A. Landy. 1992. Lambda Int protein bridges between higher order complexes at two distant chromosomal loci attL and attR. Science 256:198-203.
8. Lee, E. C., R. I. Gumport, and J. F. Gardner. 1990. Genetic analysis of bacteriophage λ integrase interactions with arm-type attachment site sequences. J. Bacteriol 172:1529-l53S.
9. Lu, F., and G. Churchward. 1994. Conjugativc transposition: Tn916 integrase contains two independent DNA binding domains that recognize different DNA sequences. EMBO J. 13:1541-1548.
10. Lynch, T. W., E. K. Read, A. N. Mattis, J. F. Gardner, and P. A. Rice. 2003. Integration host factor: putting a twist on protein-DNA recognition. J. Mol. Biol. 330:493-502.
11. Malanowska, K., A. A. Salyers, and J. F. Gardner. 2006. Characterization of a conjugative transposon integrase. IntDOT. Mol. Microbiol. 60:1228-1240.
12. Richet, E., P. Abcarian, and H. A. Nash. 1988. Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complex. Cell 52:9-17.
13. Ross, W., A. Landy, Y. Kikucbi, and H. A. Nash. 1979. Interaction of Int protein with specific sites on λ att DNA. Cell 18:297-307.
14. Ross, W., and A. Landy. 1982. Bacteriophage lambda Int protein recognizes two classes of sequence in the phage att site: characterization of arm-type sites. Proc. Natl. Acad. Sci. USA 79:7724-7728.
15. Ross, W., and A. Landy. 1983. Patterns of lambda Int recognition in the regions of strand exchange. Cell 33:261-272.
16. Salvers, A. A., N. B. Shoemaker, A. M. Stevens, and L.-Y. Li. 1995. Conjugative transposons: an unusual and diverse set of integrated gene transfer elements. Microbiol. Rev. 59:579-590.
17. Segall, A. M., S. D. Goodman, and H.A. Nash. 1994. Architectural elements in nucleoprotein complexes: interchangeability of specific and non-specific DNA binding proteins. EMBO J. 13:4536-4548.
18. Smith-Mungo, L., I. T. Chan, and A. Landy. 1994. Structure of the P22 att site. Conservation and divergence in the lambda motif or recombinogenic complexes. J. Biol. Chem. 269:20798-20805.
19. Sutanto, Y., J. M. DiChiara, N. B. Shoemaker, J. F. Gardner, and A. A. Salyers. 2004. Factors required in vitro for excision of the Bacteroides conjugative transposon. CTnDOT. Plasmid 52:119-130.
20. Van Duyne, G. D. 2002. A structural view of tyrosine recombinase site-specific recombination, p. 93-117. In N. L. Craig, R. Craige, M. Gellert, and A. M. Lambowitz (ed.), Mobile DNA II. ASM Press. Washington, DC.