Interactions of the excision proteins of CTnDOT in the attR intasome

Plasmid

Volumn 70, Issue 2, 2013, Pages 190-200

  Keeton, Carolyn M ^a   Hopp, Crystal M ^a   Yoneji, Sumiko ^a   Gardner, Jeffrey F ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Bacteroides; CTnDOT; Exc; IntDOT; Xis2c; Xis2d

Indexed keywords

BACTERIAL PROTEIN; CHLORAMPHENICOL; EXC PROTEIN; INTDOT PROTEIN; KANAMYCIN; RIFAMPICIN; UNCLASSIFIED DRUG; XIS2C PROTEIN; XIS2D PROTEIN;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL CHROMOSOME; BACTEROIDES; BINDING SITE; CHROMOSOME PAIRING; GENETIC RECOMBINATION; IN VITRO STUDY; NONHUMAN; PLASMID; PROTEIN INTERACTION; TRANSPOSON;

BACTEROIDES; BACTEROIDES SP.; SYNAPSIS;

EID: 84881023118     PISSN: 0147619X     EISSN: 10959890     Source Type: Journal    
DOI: 10.1016/j.plasmid.2013.03.009     Document Type: Article

References (27)

1. Abbani M.A., et al. Structure of the cooperative Xis-DNA complex reveals a micronucleoprotein filament that regulates phage lambda intasome assembly. Proceedings of the National Academy of Sciences 2007, 104:2109-2114.
2. Better M., et al. Role of the Xis protein of bacteriophage lambda in a specific reactive complex at the attR prophage attachment site. Cell 1983, 32:161-168.
3. Biswas T., et al. A structural basis for allosteric control of DNA recombination by lambda integrase. Nature 2005, 435:1059-1066.
4. Chen Y., et al. Crystal structure of a Flp recombinase-holliday junction complex: assembly of an active oligomer by helix swapping. Molecular Cell 2000, 6:885-897.
5. Cheng Q., et al. Integration and excision of a bacteroides conjugative transposon CTnDOT. Journal of Bacteriology 2000, 182:4035-4043.
6. Dichiara J.M., et al. IntDOT interactions with core- and arm-type sites of the conjugative transposon CTnDOT. Journal of Bacteriology 2007, 189:2692-2701.
7. Gopaul D.N., et al. Structure of the Holliday junction intermediate in Cre-loxP site-specific recombination. EMBO Journal 1998, 17:4175-4187.
8. Keeton C.M., Gardner J.F. Roles of Exc protein and DNA homology in the CTnDOT excision reaction. Journal of Bacteriology 2012, 194:3368-3376.
9. Laprise J., et al. Homology-dependent interactions determine the order of strand exchange by IntDOT recombinase. Nucleic Acid Research 2010, 38:958-969.
10. Lewis J.A., Hatfull G.F. Control of directionality in integrase-mediated recombination: examination of recombination directionality factors (RDFs) including Xis and Cox proteins. Nucleic Acid Research 2001, 29:2205-2216.
11. MacDonald D., et al. Structural basis for broad DNA-specificity in integron recombination. Nature 2006, 440:1157-1162.
12. Malanowska K., et al. CTnDOT integrase performs ordered homology-dependent and homology-independent strand exchanges. Nucleic Acid Research 2007, 35:5861-5873.
13. Mumm J.P., et al. Viewing single [lambda] site-specific recombination events from start to finish. EMBO Journal 2006, 25:4586-4595.
14. Nash H.A., Robertson C.A. Purification and properties of the Escherichia coli protein factor required for lambda integrative recombination. The Journal of Biological Chemistry 1981, 256:9246-9253.
15. Numrych T.E., et al. A genetic analysis of Xis and FIS interactions with their binding sites in bacteriophage lambda. Journal of Bacteriology 1991, 173:5954-5963.
16. Rasmussen B.A., et al. Antimicrobial resistance in bacteroides. Clinical Infectious Diseases 1993, 16:S390-S400.
17. Salyers A.A., et al. Conjugative transposons: an unusual and diverse set of integrated gene transfer elements. Microbiological Reviews 1995, 59:579-590.
18. Shoemaker N.B., et al. Evidence for extensive resistance gene transfer among Bacteroides spp. and among Bacteroides and other genera in the human colon. Applied and Environmental Microbiology 2001, 67:561-568.
19. Silhavy T.J., et al. Experiments with Gene Fusions 1984, Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., p. 303.
20. Subramanya H.S., et al. Crystal structure of the site-specific recombinase XerD. EMBO Journal 1997, 16:5178-5187.
21. Sutanto Y., et al. Characterization of Exc, a novel protein required for the excision of Bacteroides conjugative transposon. Molecular Microbiology 2002, 46:1239-1246.
22. Sutanto Y., et al. Factors required in vitro for excision of the bacteroides conjugative transposon CTnDOT. Plasmid 2004, 52(2):119-130.
23. Warren D., et al. Identification of the lambda integrase surface that interacts with Xis reveals a residue that is also critical for Int dimer formation. Proceedings of the National Academy of Sciences of the United States of America 2003, 100:8176-8181.
24. Whittle G., et al. Characterization of genes involved in modulation of conjugal transfer of the Bacteroides conjugative transposon CTnDOT. Journal of Bacteriology 2002, 184:3839-3847.
25. Wood M.M., et al. CTnDOT integrase interactions with attachment site DNA and control of directionality of the recombination reaction. Journal of Bacteriology 2010, 192:3934-3943.
26. Yin S., et al. Interaction of the lambda site-specific recombination protein Xis with attachment site DNA. Proceedings of the National Academy of Sciences 1985, 82:1040-1044.
27. Zianni M., et al. Identification of the DNA bases of a DNase I footprint by the use of dye primer sequencing on an automated capillary DNA analysis instrument. Biomolecular Techniques 2006, 17:103-113.