-
1
-
-
77956761906
-
Mimivirus: The emerging paradox of quasi-autonomous viruses
-
Claverie JM, Abergel C. 2010. Mimivirus: the emerging paradox of quasi-autonomous viruses. Trends Genet. 26:431-437. http://dx.doi.org /10.1016/j.tig.2010.07.003.
-
(2010)
Trends Genet.
, vol.26
, pp. 431-437
-
-
Claverie, J.M.1
Abergel, C.2
-
3
-
-
33645061768
-
Mimivirus and the emerging concept of "giant" virus
-
Claverie JM, Ogata H, Audic S, Abergel C, Suhre K, Fournier PE. 2006. Mimivirus and the emerging concept of "giant" virus. Virus Res. 117: 133-144. http://dx.doi.org/10.1016/j.virusres.2006.01.008.
-
(2006)
Virus Res.
, vol.117
, pp. 133-144
-
-
Claverie, J.M.1
Ogata, H.2
Audic, S.3
Abergel, C.4
Suhre, K.5
Fournier, P.E.6
-
4
-
-
0242669214
-
A giant virus in amoebae
-
La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X, Drancourt M, Birtles R, Claverie JM, Raoult D. 2003. A giant virus in amoebae. Science 299:2033. http://dx.doi.org/10.1126/science.1081867.
-
(2003)
Science
, vol.299
, pp. 2033
-
-
La Scola, B.1
Audic, S.2
Robert, C.3
Jungang, L.4
De Lamballerie, X.5
Drancourt, M.6
Birtles, R.7
Claverie, J.M.8
Raoult, D.9
-
5
-
-
8844266097
-
The 1.2-megabase genome sequence of Mimivirus
-
Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM. 2004. The 1.2-megabase genome sequence of Mimivirus. Science 306:1344-1350. http://dx.doi.org/10.1126/science.1101485.
-
(2004)
Science
, vol.306
, pp. 1344-1350
-
-
Raoult, D.1
Audic, S.2
Robert, C.3
Abergel, C.4
Renesto, P.5
Ogata, H.6
La Scola, B.7
Suzan, M.8
Claverie, J.M.9
-
6
-
-
40949150683
-
Redefining viruses: Lessons from Mimivirus
-
Raoult D, Forterre P. 2008. Redefining viruses: lessons from Mimivirus. Nat. Rev. Microbiol. 6:315-319. http://dx.doi.org/10.1038/nrmicro1858.
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 315-319
-
-
Raoult, D.1
Forterre, P.2
-
7
-
-
0038730770
-
Do viruses form lineages across different domains of life?
-
Bamford DH. 2003. Do viruses form lineages across different domains of life?. Res. Microbiol. 154:231-236. http://dx.doi.org/10.1016/S0923-2508 (03)00065-2.
-
(2003)
Res. Microbiol.
, vol.154
, pp. 231-236
-
-
Bamford, D.H.1
-
8
-
-
27944491964
-
What does structure tell us about virus evolution?
-
Bamford DH, Grimes JM, Stuart DI. 2005. What does structure tell us about virus evolution?. Curr. Opin. Struct. Biol. 15:655-663. http://dx .doi.org/10.1016/j.sbi.2005.10.012.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 655-663
-
-
Bamford, D.H.1
Grimes, J.M.2
Stuart, D.I.3
-
9
-
-
56349116764
-
Virus evolution: How far does the double beta-barrel viral lineage extend?
-
Krupovic M, Bamford DH. 2008. Virus evolution: how far does the double beta-barrel viral lineage extend?. Nat. Rev. Microbiol. 6:941-948. http://dx.doi.org/10.1038/nrmicro2033.
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 941-948
-
-
Krupovic, M.1
Bamford, D.H.2
-
10
-
-
17844402668
-
Bacteriophage HK97: Assembly of the capsid and evolutionary connections
-
Hendrix RW. 2005. Bacteriophage HK97: assembly of the capsid and evolutionary connections. Adv. Virus Res. 64:1-14. http://dx.doi.org/10 .1016/S0065-3527(05)64001-8.
-
(2005)
Adv. Virus Res.
, vol.64
, pp. 1-14
-
-
Hendrix, R.W.1
-
11
-
-
84879546904
-
Structure of the archaeal headtailed virus HSTV-1 completes the HK97 fold story
-
Pietila MK, Laurinmaki P, Russell DA, Ko CC, Jacobs-Sera D, Hendrix RW, Bamford DH, Butcher SJ. 2013. Structure of the archaeal headtailed virus HSTV-1 completes the HK97 fold story. Proc. Natl. Acad. Sci. U. S. A. 110:10604-10609. http://dx.doi.org/10.1073/pnas.1303047110.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 10604-10609
-
-
Pietila, M.K.1
Laurinmaki, P.2
Russell, D.A.3
Ko, C.C.4
Jacobs-Sera, D.5
Hendrix, R.W.6
Bamford, D.H.7
Butcher, S.J.8
-
13
-
-
84455199962
-
Double-stranded DNA viruses: 20 families and only five different architectural principles for virion assembly
-
Krupovic M, Bamford DH. 2011. Double-stranded DNA viruses: 20 families and only five different architectural principles for virion assembly. Curr. Opin. Virol. 1:118-124. http://dx.doi.org/10.1016/j.coviro.2011.06.001.
-
(2011)
Curr. Opin. Virol.
, vol.1
, pp. 118-124
-
-
Krupovic, M.1
Bamford, D.H.2
-
14
-
-
84858186641
-
Postcards from the edge: Structural genomics of archaeal viruses
-
Krupovic M, White MF, Forterre P, Prangishvili D. 2012. Postcards from the edge: structural genomics of archaeal viruses. Adv. Virus Res. 82:33-62. http://dx.doi.org/10.1016/B978-0-12-394621-8.00012-1.
-
(2012)
Adv. Virus Res.
, vol.82
, pp. 33-62
-
-
Krupovic, M.1
White, M.F.2
Forterre, P.3
Prangishvili, D.4
-
15
-
-
84884230123
-
The wonderful world of archaeal viruses
-
Prangishvili D. 2013. The wonderful world of archaeal viruses. Annu. Rev. Microbiol. 67:565-585. http://dx.doi.org/10.1146/annurev-micro -092412-155633.
-
(2013)
Annu. Rev. Microbiol.
, vol.67
, pp. 565-585
-
-
Prangishvili, D.1
-
16
-
-
64149084027
-
An ssDNA virus infecting archaea: A new lineage of viruses with a membrane envelope
-
Pietila MK, Roine E, Paulin L, Kalkkinen N, Bamford DH. 2009. An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Mol. Microbiol. 72:307-319. http://dx.doi.org/10.1111/j.1365-2958.2009.06642.x.
-
(2009)
Mol. Microbiol.
, vol.72
, pp. 307-319
-
-
Pietila, M.K.1
Roine, E.2
Paulin, L.3
Kalkkinen, N.4
Bamford, D.H.5
-
17
-
-
77949366453
-
New, closely related haloarchaeal viral elements with different nucleic acid types
-
Roine E, Kukkaro P, Paulin L, Laurinavicius S, Domanska A, Somerharju P, Bamford DH. 2010. New, closely related haloarchaeal viral elements with different nucleic acid types. J. Virol. 84:3682-3689. http: //dx.doi.org/10. 1128/JVI.01879-09.
-
(2010)
J. Virol.
, vol.84
, pp. 3682-3689
-
-
Roine, E.1
Kukkaro, P.2
Paulin, L.3
Laurinavicius, S.4
Domanska, A.5
Somerharju, P.6
Bamford, D.H.7
-
18
-
-
84880443496
-
Pandoraviruses: Amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes
-
Philippe N, Legendre M, Doutre G, Coute Y, Poirot O, Lescot M, Arslan D, Seltzer V, Bertaux L, Bruley C, Garin J, Claverie JM, Abergel C. 2013. Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science 341:281-286. http://dx.doi .org/10.1126/science. 1239181.
-
(2013)
Science
, vol.341
, pp. 281-286
-
-
Philippe, N.1
Legendre, M.2
Doutre, G.3
Coute, Y.4
Poirot, O.5
Lescot, M.6
Arslan, D.7
Seltzer, V.8
Bertaux, L.9
Bruley, C.10
Garin, J.11
Claverie, J.M.12
Abergel, C.13
-
19
-
-
84885947329
-
The two empires and three domains of life in the postgenomic age
-
Koonin EV. 2010. The two empires and three domains of life in the postgenomic age. Nat. Educ. 3:27.
-
(2010)
Nat. Educ.
, vol.3
, pp. 27
-
-
Koonin, E.V.1
-
20
-
-
84873563756
-
Orthologous gene clusters and taxon signature genes for viruses of prokaryotes
-
Kristensen DM, Waller AS, Yamada T, Bork P, Mushegian AR, Koonin EV. 2013. Orthologous gene clusters and taxon signature genes for viruses of prokaryotes. J. Bacteriol. 195:941-950. http://dx.doi.org/10 .1128/JB.01801-12.
-
(2013)
J. Bacteriol.
, vol.195
, pp. 941-950
-
-
Kristensen, D.M.1
Waller, A.S.2
Yamada, T.3
Bork, P.4
Mushegian, A.R.5
Koonin, E.V.6
-
21
-
-
74549198854
-
Eukaryotic large nucleocytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution
-
Yutin N, Wolf YI, Raoult D, Koonin EV. 2009. Eukaryotic large nucleocytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution. Virol. J. 6:223. http://dx.doi.org/10.1186 /1743-422X-6-223.
-
(2009)
Virol. J.
, vol.6
, pp. 223
-
-
Yutin, N.1
Wolf, Y.I.2
Raoult, D.3
Koonin, E.V.4
-
22
-
-
33947593126
-
The ancient virus world and evolution of cells
-
Koonin EV, Senkevich TG, Dolja VV. 2006. The ancient virus world and evolution of cells. Biol. Direct 1:29. http://dx.doi.org/10.1186/1745-6150-1-29.
-
(2006)
Biol. Direct
, vol.1
, pp. 29
-
-
Koonin, E.V.1
Senkevich, T.G.2
Dolja, V.V.3
-
23
-
-
56349152646
-
The big bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups
-
Koonin EV, Wolf YI, Nagasaki K, Dolja VV. 2008. The big bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups. Nat. Rev. Microbiol. 6:925-939. http://dx.doi.org/10.1038 /nrmicro2030.
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 925-939
-
-
Koonin, E.V.1
Wolf, Y.I.2
Nagasaki, K.3
Dolja, V.V.4
-
24
-
-
0024784519
-
Identification of four conserved motifs among the RNA-dependent polymerase encoding elements
-
Poch O, Sauvaget I, Delarue M, Tordo N. 1989. Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. EMBO J. 8:3867-3874.
-
(1989)
EMBO J.
, vol.8
, pp. 3867-3874
-
-
Poch, O.1
Sauvaget, I.2
Delarue, M.3
Tordo, N.4
-
25
-
-
0025006614
-
Origin and evolution of retroelements based upon their reverse transcriptase sequences
-
Xiong Y, Eickbush TH. 1990. Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J. 9:3353-3362.
-
(1990)
EMBO J.
, vol.9
, pp. 3353-3362
-
-
Xiong, Y.1
Eickbush, T.H.2
-
26
-
-
77954058183
-
Presence of a classical RRM-fold palm domain in Thg1-type 3=-5= nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains
-
Anantharaman V, Iyer LM, Aravind L. 2010. Presence of a classical RRM-fold palm domain in Thg1-type 3=-5= nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains. Biol. Direct 5:43. http://dx.doi.org/10.1186/1745-6150-5-43.
-
(2010)
Biol. Direct
, vol.5
, pp. 43
-
-
Anantharaman, V.1
Iyer, L.M.2
Aravind, L.3
-
27
-
-
22444435033
-
Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: Structural insights and new members
-
Iyer LM, Koonin EV, Leipe DD, Aravind L. 2005. Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members. Nucleic Acids Res. 33: 3875-3896. http://dx.doi.org/10.1093/nar/gki702.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 3875-3896
-
-
Iyer, L.M.1
Koonin, E.V.2
Leipe, D.D.3
Aravind, L.4
-
28
-
-
0024462161
-
Viral proteins containing the purine NTP-binding sequence pattern
-
Gorbalenya AE, Koonin EV. 1989. Viral proteins containing the purine NTP-binding sequence pattern. Nucleic Acids Res. 17:8413-8440. http: //dx.doi.org/10.1093/nar/17.21.8413.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 8413-8440
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
29
-
-
1642325936
-
Evolutionary history and higher order classification of AAA-ATPases
-
Iyer LM, Leipe DD, Koonin EV, Aravind L. 2004. Evolutionary history and higher order classification of AAA-ATPases. J. Struct. Biol. 146:11-31. http://dx.doi.org/10.1016/j.jsb.2003.10.010.
-
(2004)
J. Struct. Biol.
, vol.146
, pp. 11-31
-
-
Iyer, L.M.1
Leipe, D.D.2
Koonin, E.V.3
Aravind, L.4
-
30
-
-
84885961394
-
Networks of evolutionary interactions underlying the polyphyletic origin of ssDNA viruses
-
Krupovic M. 2013. Networks of evolutionary interactions underlying the polyphyletic origin of ssDNA viruses. Curr. Opin. Virol. 3:578-586. http://dx.doi.org/10.1016/j.coviro.2013.06.010.
-
(2013)
Curr. Opin. Virol.
, vol.3
, pp. 578-586
-
-
Krupovic, M.1
-
31
-
-
84455173447
-
Genomics of bacterial and archaeal viruses: Dynamics within the prokaryotic virosphere
-
Krupovic M, Prangishvili D, Hendrix RW, Bamford DH. 2011. Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiol. Mol. Biol. Rev. 75:610-635. http://dx .doi.org/10.1128/MMBR.00011-11.
-
(2011)
Microbiol. Mol. Biol. Rev.
, vol.75
, pp. 610-635
-
-
Krupovic, M.1
Prangishvili, D.2
Hendrix, R.W.3
Bamford, D.H.4
-
32
-
-
84878007916
-
Virophages, polintons, and transpovirons: A complex evolutionary network of diverse selfish genetic elements with different reproduction strategies
-
Yutin N, Raoult D, Koonin EV. 2013. Virophages, polintons, and transpovirons: a complex evolutionary network of diverse selfish genetic elements with different reproduction strategies. Virol. J. 10:158. http: //dx.doi.org/10.1186/1743-422X-10-158.
-
(2013)
Virol. J.
, vol.10
, pp. 158
-
-
Yutin, N.1
Raoult, D.2
Koonin, E.V.3
-
33
-
-
0015114139
-
Expression of animal virus genomes
-
Baltimore D. 1971. Expression of animal virus genomes. Bacteriol. Rev. 35:235-241.
-
(1971)
Bacteriol. Rev.
, vol.35
, pp. 235-241
-
-
Baltimore, D.1
-
34
-
-
0025836102
-
Genome replication/expression strategies of positivestrand RNA viruses: A simple version of a combinatorial classification and prediction of new strategies
-
Koonin EV. 1991. Genome replication/expression strategies of positivestrand RNA viruses: a simple version of a combinatorial classification and prediction of new strategies. Virus Genes 5:273-281. http://dx.doi .org/10.1007/BF00568977.
-
(1991)
Virus Genes
, vol.5
, pp. 273-281
-
-
Koonin, E.V.1
-
35
-
-
81755166283
-
Common origins and host-dependent diversity of plant and animal viromes
-
Dolja VV, Koonin EV. 2011. Common origins and host-dependent diversity of plant and animal viromes. Curr. Opin. Virol. 1:322-331. http://dx.doi.org/10. 1016/j.coviro.2011.09.007.
-
(2011)
Curr. Opin. Virol.
, vol.1
, pp. 322-331
-
-
Dolja, V.V.1
Koonin, E.V.2
-
36
-
-
0027504136
-
Evolution and taxonomy of positive-strand RNA viruses: Implications of comparative analysis of amino acid sequences
-
Koonin EV, Dolja VV. 1993. Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit. Rev. Biochem. Mol. Biol. 28:375-430. http://dx.doi.org /10.3109/ 10409239309078440.
-
(1993)
Crit. Rev. Biochem. Mol. Biol.
, vol.28
, pp. 375-430
-
-
Koonin, E.V.1
Dolja, V.V.2
-
38
-
-
0034654296
-
Detection of an RNA-dependent RNA polymerase in mitochondria from a mitovirusinfected isolate of the Dutch elm disease fungus, Ophiostoma novo-ulmi
-
Cole TE, Hong Y, Brasier CM, Buck KW. 2000. Detection of an RNA-dependent RNA polymerase in mitochondria from a mitovirusinfected isolate of the Dutch elm disease fungus, Ophiostoma novo-ulmi. Virology 268:239-243. http://dx.doi.org/10.1006/viro.1999.0097.
-
(2000)
Virology
, vol.268
, pp. 239-243
-
-
Cole, T.E.1
Hong, Y.2
Brasier, C.M.3
Buck, K.W.4
-
39
-
-
34547124095
-
Interactions of the RNA polymerase with the viral genome at the 5=- and 3=-ends contribute to 20SRNAnarnavirus persistence in yeast
-
Fujimura T, Esteban R. 2007. Interactions of the RNA polymerase with the viral genome at the 5=- and 3=-ends contribute to 20SRNAnarnavirus persistence in yeast. J. Biol. Chem. 282:19011-19019. http://dx.doi.org /10.1074/jbc. M702432200.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 19011-19019
-
-
Fujimura, T.1
Esteban, R.2
-
40
-
-
84874957438
-
The family Narnaviridae: Simplest of RNA viruses
-
Hillman BI, Cai G. 2013. The family Narnaviridae: simplest of RNA viruses. Adv. Virus Res. 86:149-176. http://dx.doi.org/10.1016/B978-0-12-394315- 6.00006-4.
-
(2013)
Adv. Virus Res.
, vol.86
, pp. 149-176
-
-
Hillman, B.I.1
Cai, G.2
-
41
-
-
84860889714
-
Family narnaviridae
-
King MQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), 9th ed. Elsevier Academic Press, Amsterdam, Netherlands
-
Hillman BI, Esteban R. 2012. Family Narnaviridae, p 1055-1060. In King MQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Virus taxonomy, 9th ed. Elsevier Academic Press, Amsterdam, Netherlands.
-
(2012)
Virus Taxonomy
, pp. 1055-1060
-
-
Hillman, B.I.1
Esteban, R.2
-
42
-
-
0034714308
-
Persistent yeast single-stranded RNA viruses exist in vivo as genomic RNA.RNA polymerase complexes in 1:1 stoichiometry
-
Solorzano A, Rodriguez-Cousino N, Esteban R, Fujimura T. 2000. Persistent yeast single-stranded RNA viruses exist in vivo as genomic RNA.RNA polymerase complexes in 1:1 stoichiometry. J. Biol. Chem. 275:26428-26435. http://dx.doi.org/10.1074/jbc.M002281200.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 26428-26435
-
-
Solorzano, A.1
Rodriguez-Cousino, N.2
Esteban, R.3
Fujimura, T.4
-
43
-
-
84855322610
-
A member of the virus family Narnaviridae from the plant pathogenic oomycete Phytophthora infestans
-
Cai G, Myers K, Fry WE, Hillman BI. 2012. A member of the virus family Narnaviridae from the plant pathogenic oomycete Phytophthora infestans. Arch. Virol. 157:165-169. http://dx.doi.org/10.1007/s00705-011-1126-5.
-
(2012)
Arch. Virol.
, vol.157
, pp. 165-169
-
-
Cai, G.1
Myers, K.2
Fry, W.E.3
Hillman, B.I.4
-
44
-
-
0032551233
-
Evolutionary relationships among putative RNA-dependent RNA polymerases encoded by a mitochondrial virus-like RNA in the Dutch elm disease fungus, Ophiostoma novo-ulmi, by other viruses and virus-like RNAs and by the Arabidopsis mitochondrial genome
-
Hong Y, Cole TE, Brasier CM, Buck KW. 1998. Evolutionary relationships among putative RNA-dependent RNA polymerases encoded by a mitochondrial virus-like RNA in the Dutch elm disease fungus, Ophiostoma novo-ulmi, by other viruses and virus-like RNAs and by the Arabidopsis mitochondrial genome. Virology 246:158-169. http://dx.doi .org/10.1006/viro.1998.9178.
-
(1998)
Virology
, vol.246
, pp. 158-169
-
-
Hong, Y.1
Cole, T.E.2
Brasier, C.M.3
Buck, K.W.4
-
45
-
-
70350512876
-
Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom reassortment of viral genome segments as its possible route of origin
-
Rastgou M, Habibi MK, Izadpanah K, Masenga V, Milne RG, Wolf YI, Koonin EV, Turina M. 2009. Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom reassortment of viral genome segments as its possible route of origin. J. Gen. Virol. 90: 2525-2535. http://dx.doi.org/10.1099/vir.0.013086-0.
-
(2009)
J. Gen. Virol.
, vol.90
, pp. 2525-2535
-
-
Rastgou, M.1
Habibi, M.K.2
Izadpanah, K.3
Masenga, V.4
Milne, R.G.5
Wolf, Y.I.6
Koonin, E.V.7
Turina, M.8
-
46
-
-
69249240353
-
Viruses of plant pathogenic fungi
-
Ghabrial SA, Suzuki N. 2009. Viruses of plant pathogenic fungi. Annu. Rev. Phytopathol. 47:353-384. http://dx.doi.org/10.1146/annurev-phyto-080508- 081932.
-
(2009)
Annu. Rev. Phytopathol.
, vol.47
, pp. 353-384
-
-
Ghabrial, S.A.1
Suzuki, N.2
-
47
-
-
22944492730
-
Hypovirulence: Mycoviruses at the fungal-plant interface
-
Nuss DL. 2005. Hypovirulence: mycoviruses at the fungal-plant interface. Nat. Rev. Microbiol. 3:632-642. http://dx.doi.org/10.1038/nrmicro1206.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 632-642
-
-
Nuss, D.L.1
-
48
-
-
33645456207
-
Eukaryotic evolution, changes and challenges
-
Embley TM, Martin W. 2006. Eukaryotic evolution, changes and challenges. Nature 440:623-630. http://dx.doi.org/10.1038/nature04546.
-
(2006)
Nature
, vol.440
, pp. 623-630
-
-
Embley, T.M.1
Martin, W.2
-
49
-
-
84988044805
-
The energetics of genome complexity
-
Lane N, Martin W. 2010. The energetics of genome complexity. Nature 467:929-934. http://dx.doi.org/10.1038/nature09486.
-
(2010)
Nature
, vol.467
, pp. 929-934
-
-
Lane, N.1
Martin, W.2
-
50
-
-
84865800708
-
Family potyviridae
-
King MQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), 9th ed. Elsevier Academic Press, Amsterdam, Netherlands
-
Adams MJ, Zerbini FM, French R, Rabenstein F, Stenger DC, Valconen JPT. 2012. Family Potyviridae, p 1069-1089. In King MQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Virus taxonomy, 9th ed. Elsevier Academic Press, Amsterdam, Netherlands.
-
(2012)
Virus Taxonomy
, pp. 1069-1089
-
-
Adams, M.J.1
Zerbini, F.M.2
French, R.3
Rabenstein, F.4
Stenger, D.C.5
Valconen, J.P.T.6
-
51
-
-
27444442657
-
The tree of eukaryotes
-
Keeling PJ, Burger G, Durnford DG, Lang BF, Lee RW, Pearlman RE, Roger AJ, Gray MW. 2005. The tree of eukaryotes. Trends Ecol. Evol. 20:670-676. http://dx.doi.org/10.1016/j.tree.2005.09.005.
-
(2005)
Trends Ecol. Evol.
, vol.20
, pp. 670-676
-
-
Keeling, P.J.1
Burger, G.2
Durnford, D.G.3
Lang, B.F.4
Lee, R.W.5
Pearlman, R.E.6
Roger, A.J.7
Gray, M.W.8
-
52
-
-
77955039174
-
The origin and early evolution of eukaryotes in the light of phylogenomics
-
Koonin EV. 2010. The origin and early evolution of eukaryotes in the light of phylogenomics. Genome Biol. 11:209. http://dx.doi.org/10.1186 /gb-2010-11-5-209.
-
(2010)
Genome Biol.
, vol.11
, pp. 209
-
-
Koonin, E.V.1
-
53
-
-
79960202498
-
Mycoviruses, RNA silencing, and viral RNA recombination
-
Nuss DL. 2011. Mycoviruses, RNA silencing, and viral RNA recombination. Adv. Virus Res. 80:25-48. http://dx.doi.org/10.1016/B978-0-12-385987-7.00002-6.
-
(2011)
Adv. Virus Res.
, vol.80
, pp. 25-48
-
-
Nuss, D.L.1
-
54
-
-
0025720459
-
Evidence for common ancestry of a chestnut blight hypovirulenceassociated double-stranded RNA and a group of positive-strand RNA plant viruses
-
Koonin EV, Choi GH, Nuss DL, Shapira R, Carrington JC. 1991. Evidence for common ancestry of a chestnut blight hypovirulenceassociated double-stranded RNA and a group of positive-strand RNA plant viruses. Proc. Natl. Acad. Sci. U. S. A. 88:10647-10651. http://dx .doi.org/10.1073/pnas.88.23.10647.
-
(1991)
Proc. Natl. Acad. Sci. U. S. A.
, vol.88
, pp. 10647-10651
-
-
Koonin, E.V.1
Choi, G.H.2
Nuss, D.L.3
Shapira, R.4
Carrington, J.C.5
-
55
-
-
0032514856
-
A counterdefensive strategy of plant viruses: Suppression of posttranscriptional gene silencing
-
Kasschau KD, Carrington JC. 1998. A counterdefensive strategy of plant viruses: suppression of posttranscriptional gene silencing. Cell 95:461-470. http://dx.doi.org/10.1016/S0092-8674(00)81614-1.
-
(1998)
Cell
, vol.95
, pp. 461-470
-
-
Kasschau, K.D.1
Carrington, J.C.2
-
56
-
-
33745122233
-
Hypovirus papain-like protease p29 suppresses RNA silencing in the natural fungal host and in a heterologous plant system
-
Segers GC, van Wezel R, Zhang X, Hong Y, Nuss DL. 2006. Hypovirus papain-like protease p29 suppresses RNA silencing in the natural fungal host and in a heterologous plant system. Eukaryot. Cell 5:896-904. http: //dx.doi.org/10.1128/EC.00373-05.
-
(2006)
Eukaryot. Cell
, vol.5
, pp. 896-904
-
-
Segers, G.C.1
Van Wezel, R.2
Zhang, X.3
Hong, Y.4
Nuss, D.L.5
-
57
-
-
84871291709
-
Family endornaviridae
-
King MQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), 9th ed. Elsevier Academic Press, Amsterdam, Netherlands
-
Fukuhara T, Gibbs MJ. 2012. Family Endornaviridae, p 519-521. In King MQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Virus taxonomy, 9th ed. Elsevier Academic Press, Amsterdam, Netherlands.
-
(2012)
Virus Taxonomy
, pp. 519-521
-
-
Fukuhara, T.1
Gibbs, M.J.2
-
59
-
-
0033983852
-
Phylogenetic analysis of some large double-stranded RNA replicons from plants suggests they evolved from a defective single-stranded RNA virus
-
Gibbs MJ, Koga R, Moriyama H, Pfeiffer P, Fukuhara T. 2000. Phylogenetic analysis of some large double-stranded RNA replicons from plants suggests they evolved from a defective single-stranded RNA virus. J. Gen. Virol. 81:227-233.
-
(2000)
J. Gen. Virol.
, vol.81
, pp. 227-233
-
-
Gibbs, M.J.1
Koga, R.2
Moriyama, H.3
Pfeiffer, P.4
Fukuhara, T.5
-
60
-
-
59649098917
-
A novel mycovirus that is related to the human pathogen hepatitis e virus and rubi-like viruses
-
Liu H, Fu Y, Jiang D, Li G, Xie J, Peng Y, Yi X, Ghabrial SA. 2009. A novel mycovirus that is related to the human pathogen hepatitis E virus and rubi-like viruses. J. Virol. 83:1981-1991. http://dx.doi.org/10.1128 /JVI.01897-08.
-
(2009)
J. Virol.
, vol.83
, pp. 1981-1991
-
-
Liu, H.1
Fu, Y.2
Jiang, D.3
Li, G.4
Xie, J.5
Peng, Y.6
Yi, X.7
Ghabrial, S.A.8
-
61
-
-
70349332795
-
A novel putative virus of Gremmeniella abietina type B (Ascomycota: Helotiaceae) has a composite genome with endornavirus affinities
-
Tuomivirta TT, Kaitera J, Hantula J. 2009. A novel putative virus of Gremmeniella abietina type B (Ascomycota: Helotiaceae) has a composite genome with endornavirus affinities. J. Gen. Virol. 90:2299-2305. http://dx.doi.org/10. 1099/vir.0.011973-0.
-
(2009)
J. Gen. Virol.
, vol.90
, pp. 2299-2305
-
-
Tuomivirta, T.T.1
Kaitera, J.2
Hantula, J.3
-
62
-
-
18144427810
-
A double-stranded RNA from a Phytophthora species is related to the plant endornaviruses and contains a putative UDP glycosyltransferase gene
-
Hacker CV, Brasier CM, Buck KW. 2005. A double-stranded RNA from a Phytophthora species is related to the plant endornaviruses and contains a putative UDP glycosyltransferase gene. J. Gen. Virol. 86:1561-1570. http://dx.doi.org/10.1099/vir.0.80808-0.
-
(2005)
J. Gen. Virol.
, vol.86
, pp. 1561-1570
-
-
Hacker, C.V.1
Brasier, C.M.2
Buck, K.W.3
-
63
-
-
34848823671
-
Family Flexiviridae: A case study in virion and genome plasticity
-
Martelli GP, Adams MJ, Kreuze JF, Dolja VV. 2007. Family Flexiviridae: a case study in virion and genome plasticity. Annu. Rev. Phytopathol. 45:73-100. http://dx.doi.org/10.1146/annurev.phyto.45.062806 .094401.
-
(2007)
Annu. Rev. Phytopathol.
, vol.45
, pp. 73-100
-
-
Martelli, G.P.1
Adams, M.J.2
Kreuze, J.F.3
Dolja, V.V.4
-
64
-
-
30344472709
-
Characterization of debilitation-associated mycovirus infecting the plant-pathogenic fungus Sclerotinia sclerotiorum
-
Xie J, Wei D, Jiang D, Fu Y, Li G, Ghabrial S, Peng Y. 2006. Characterization of debilitation-associated mycovirus infecting the plant-pathogenic fungus Sclerotinia sclerotiorum. J. Gen. Virol. 87:241-249. http://dx.doi.org/10.1099/vir.0.81522-0.
-
(2006)
J. Gen. Virol.
, vol.87
, pp. 241-249
-
-
Xie, J.1
Wei, D.2
Jiang, D.3
Fu, Y.4
Li, G.5
Ghabrial, S.6
Peng, Y.7
-
65
-
-
33645842748
-
Genome characterization of a flexuous rod-shaped mycovirus, Botrytis virus X, reveals high amino acid identity to genes from plant 'potex-like' viruses
-
Howitt RL, Beever RE, Pearson MN, Forster RL. 2006. Genome characterization of a flexuous rod-shaped mycovirus, Botrytis virus X, reveals high amino acid identity to genes from plant 'potex-like' viruses. Arch. Virol. 151:563-579. http://dx.doi.org/10.1007/s00705-005-0621-y.
-
(2006)
Arch. Virol.
, vol.151
, pp. 563-579
-
-
Howitt, R.L.1
Beever, R.E.2
Pearson, M.N.3
Forster, R.L.4
-
66
-
-
0035164705
-
Genome characterization of Botrytis virus F, a flexuous rod-shaped mycovirus resembling plant 'potex-like' viruses
-
Howitt RL, Beever RE, Pearson MN, Forster RL. 2001. Genome characterization of Botrytis virus F, a flexuous rod-shaped mycovirus resembling plant 'potex-like' viruses. J. Gen. Virol. 82:67-78.
-
(2001)
J. Gen. Virol.
, vol.82
, pp. 67-78
-
-
Howitt, R.L.1
Beever, R.E.2
Pearson, M.N.3
Forster, R.L.4
-
67
-
-
0032033662
-
Molecular characterization of a single mitochondria-associated double-stranded RNA in the green alga Bryopsis
-
Koga R, Fukuhara T, Nitta T. 1998. Molecular characterization of a single mitochondria-associated double-stranded RNA in the green alga Bryopsis. Plant Mol. Biol. 36:717-724. http://dx.doi.org/10.1023 /A:1005907310553.
-
(1998)
Plant Mol. Biol.
, vol.36
, pp. 717-724
-
-
Koga, R.1
Fukuhara, T.2
Nitta, T.3
-
68
-
-
0038057719
-
Double-stranded RNA replicons associated with chloroplasts of a green alga, Bryopsis cinicola
-
Koga R, Horiuchi H, Fukuhara T. 2003. Double-stranded RNA replicons associated with chloroplasts of a green alga, Bryopsis cinicola. Plant Mol. Biol. 51:991-999. http://dx.doi.org/10.1023/A:1023003412859.
-
(2003)
Plant Mol. Biol.
, vol.51
, pp. 991-999
-
-
Koga, R.1
Horiuchi, H.2
Fukuhara, T.3
-
69
-
-
84873047505
-
Family partitiviridae
-
King MQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed),. Elsevier Academic Press, Amsterdam, Netherlands
-
Ghabrial SA, Nibert ML, Maiss E, Lesker T, Baker TS, Tao YJ. 2012. Family Partitiviridae, p 523-534. In King MQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Virus taxonomy. Elsevier Academic Press, Amsterdam, Netherlands.
-
(2012)
Virus Taxonomy
, pp. 523-534
-
-
Ghabrial, S.A.1
Nibert, M.L.2
Maiss, E.3
Lesker, T.4
Baker, T.S.5
Tao, Y.J.6
-
70
-
-
84901034588
-
Genus umbravirus
-
King MQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Elsevier Academic Press, Amsterdam, Netherlands
-
Ryabov EV, Taliansky ME, Robinson DJ, Waterhouse PM, Murant AF, de Zoeten GAFBW, Vetten HJ, Gibbs MJ. 2012. Genus umbravirus, p 1191-1195. In King MQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Virus taxonomy. Elsevier Academic Press, Amsterdam, Netherlands.
-
(2012)
Virus Taxonomy
, pp. 1191-1195
-
-
Ryabov, E.V.1
Taliansky, M.E.2
Robinson, D.J.3
Waterhouse, P.M.4
Murant, A.F.5
De Zoeten, G.A.F.B.W.6
Vetten, H.J.7
Gibbs, M.J.8
-
71
-
-
84873918524
-
-
9th ed. Elsevier Academic Press, Amsterdam, Netherlands
-
King MQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed). 2012. Virus taxonomy, 9th ed. Elsevier Academic Press, Amsterdam, Netherlands.
-
(2012)
Virus Taxonomy
-
-
King, M.Q.1
Adams, M.J.2
Carstens, E.B.3
Lefkowitz, E.J.4
-
72
-
-
84885949870
-
A virocentric perspective on the evolution of life
-
Koonin EV, Dolja VV. 2013. A virocentric perspective on the evolution of life. Curr. Opin. Virol. 3:546-557. http://dx.doi.org/10.1016/j.coviro .2013.06.008.
-
(2013)
Curr. Opin. Virol.
, vol.3
, pp. 546-557
-
-
Koonin, E.V.1
Dolja, V.V.2
-
73
-
-
57749192264
-
Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer
-
Goremykin VV, Salamini F, Velasco R, Viola R. 2009. Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer. Mol. Biol. Evol. 26:99-110. http://dx.doi.org/10.1093/molbev/msn226.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 99-110
-
-
Goremykin, V.V.1
Salamini, F.2
Velasco, R.3
Viola, R.4
-
74
-
-
43049094016
-
The diversity of retrotransposons and the properties of their reverse transcriptases
-
Eickbush TH, Jamburuthugoda VK. 2008. The diversity of retrotransposons and the properties of their reverse transcriptases. Virus Res. 134: 221-234. http://dx.doi.org/10.1016/j.virusres.2007.12.010.
-
(2008)
Virus Res.
, vol.134
, pp. 221-234
-
-
Eickbush, T.H.1
Jamburuthugoda, V.K.2
-
75
-
-
84855488261
-
A widespread class of reverse transcriptase- related cellular genes
-
Gladyshev EA, Arkhipova IR. 2011. A widespread class of reverse transcriptase- related cellular genes. Proc. Natl. Acad. Sci. U. S. A. 108:20311-20316. http://dx.doi.org/10.1073/pnas.1100266108.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 20311-20316
-
-
Gladyshev, E.A.1
Arkhipova, I.R.2
-
76
-
-
57049092878
-
The take and give between retrotransposable elements and their hosts
-
Beauregard A, Curcio MJ, Belfort M. 2008. The take and give between retrotransposable elements and their hosts. Annu. Rev. Genet. 42:587-617. http://dx.doi.org/10.1146/annurev.genet.42.110807.091549.
-
(2008)
Annu. Rev. Genet.
, vol.42
, pp. 587-617
-
-
Beauregard, A.1
Curcio, M.J.2
Belfort, M.3
-
77
-
-
34548646673
-
The Biological Big Bang model for the major transitions in evolution
-
Koonin EV. 2007. The Biological Big Bang model for the major transitions in evolution. Biol. Direct 2:21. http://dx.doi.org/10.1186/1745-6150-2-21.
-
(2007)
Biol. Direct
, vol.2
, pp. 21
-
-
Koonin, E.V.1
-
78
-
-
68149093715
-
Search for a tree of life in the thicket of the phylogenetic forest
-
Puigbo P, Wolf YI, Koonin EV. 2009. Search for a tree of life in the thicket of the phylogenetic forest. J. Biol. 8:59. http://dx.doi.org/10.1186 /jbiol159.
-
(2009)
J. Biol.
, vol.8
, pp. 59
-
-
Puigbo, P.1
Wolf, Y.I.2
Koonin, E.V.3
-
79
-
-
33751039720
-
Bushes in the tree of life
-
Rokas A, Carroll SB. 2006. Bushes in the tree of life. PLoS Biol. 4:e352. http://dx.doi.org/10.1371/journal.pbio.0040352.
-
(2006)
PLoS Biol.
, vol.4
-
-
Rokas, A.1
Carroll, S.B.2
-
80
-
-
29344441657
-
Animal evolution and the molecular signature of radiations compressed in time
-
Rokas A, Kruger D, Carroll SB. 2005. Animal evolution and the molecular signature of radiations compressed in time. Science 310:1933-1938. http://dx.doi.org/10.1126/science.1116759.
-
(2005)
Science
, vol.310
, pp. 1933-1938
-
-
Rokas, A.1
Kruger, D.2
Carroll, S.B.3
-
81
-
-
84863874209
-
Group II introns: Mobile ribozymes that invade DNA
-
Lambowitz AM, Zimmerly S. 2011. Group II introns: mobile ribozymes that invade DNA. Cold Spring Harb. Perspect. Biol. 3:a003616. http://dx .doi.org/10.1101/cshperspect.a003616.
-
(2011)
Cold Spring Harb. Perspect. Biol.
, vol.3
-
-
Lambowitz, A.M.1
Zimmerly, S.2
-
82
-
-
70450225451
-
A broadscale phylogenetic analysis of group II intron RNAs and intron-encoded reverse transcriptases
-
Simon DM, Kelchner SA, Zimmerly S. 2009. A broadscale phylogenetic analysis of group II intron RNAs and intron-encoded reverse transcriptases. Mol. Biol. Evol. 26:2795-2808. http://dx.doi.org/10.1093/molbev /msp193.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 2795-2808
-
-
Simon, D.M.1
Kelchner, S.A.2
Zimmerly, S.3
-
83
-
-
0030811530
-
The Mauriceville retroplasmid reverse transcriptase initiates cDNA synthesis de novo at the 3= end of tRNAs
-
Chiang CC, Lambowitz AM. 1997. The Mauriceville retroplasmid reverse transcriptase initiates cDNA synthesis de novo at the 3= end of tRNAs. Mol. Cell. Biol. 17:4526-4535.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 4526-4535
-
-
Chiang, C.C.1
Lambowitz, A.M.2
-
84
-
-
0028856062
-
Natural plasmids of filamentous fungi
-
Griffiths AJ. 1995. Natural plasmids of filamentous fungi. Microbiol. Rev. 59:673-685.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 673-685
-
-
Griffiths, A.J.1
-
85
-
-
58749113086
-
A diversity of uncharacterized reverse transcriptases in bacteria
-
Simon DM, Zimmerly S. 2008. A diversity of uncharacterized reverse transcriptases in bacteria. Nucleic Acids Res. 36:7219-7229. http://dx .doi.org/10.1093/nar/gkn867.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 7219-7229
-
-
Simon, D.M.1
Zimmerly, S.2
-
86
-
-
34247344319
-
Retrotransposable elements and human disease
-
Callinan PA, Batzer MA. 2006. Retrotransposable elements and human disease. Genome Dyn. 1:104-115. http://dx.doi.org/10.1159/000092503.
-
(2006)
Genome Dyn.
, vol.1
, pp. 104-115
-
-
Callinan, P.A.1
Batzer, M.A.2
-
87
-
-
84855281420
-
Repetitive elements may comprise over two-thirds of the human genome
-
de Koning AP, Gu W, Castoe TA, Batzer MA, Pollock DD. 2011. Repetitive elements may comprise over two-thirds of the human genome. PLoS Genet. 7:e1002384. http://dx.doi.org/10.1371/journal.pgen .1002384.
-
(2011)
PLoS Genet.
, vol.7
-
-
De Koning, A.P.1
Gu, W.2
Castoe, T.A.3
Batzer, M.A.4
Pollock, D.D.5
-
88
-
-
77955689247
-
Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: Insights from genome- wide analysis and multi-specific comparison
-
Du J, Tian Z, Hans CS, Laten HM, Cannon SB, Jackson SA, Shoemaker RC, Ma J. 2010. Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome- wide analysis and multi-specific comparison. Plant J. 63:584-598. http://dx.doi.org/10.1111/j. 1365-313X.2010.04263.x.
-
(2010)
Plant J.
, vol.63
, pp. 584-598
-
-
Du, J.1
Tian, Z.2
Hans, C.S.3
Laten, H.M.4
Cannon, S.B.5
Jackson, S.A.6
Shoemaker, R.C.7
Ma, J.8
-
89
-
-
84869506996
-
Regulation of transposable elements in maize
-
Lisch D. 2012. Regulation of transposable elements in maize. Curr. Opin. Plant Biol. 15:511-516. http://dx.doi.org/10.1016/j.pbi.2012.07 .001.
-
(2012)
Curr. Opin. Plant Biol.
, vol.15
, pp. 511-516
-
-
Lisch, D.1
-
90
-
-
77953656657
-
Repetitive elements in parasitic protozoa
-
Clayton C. 2010. Repetitive elements in parasitic protozoa. BMC Biol. 8:64. http://dx.doi.org/10.1186/1741-7007-8-64.
-
(2010)
BMC Biol.
, vol.8
, pp. 64
-
-
Clayton, C.1
-
91
-
-
23844456247
-
Penelope-like elements - A new class of retroelements: Distribution, function and possible evolutionary significance
-
Evgen'ev MB, Arkhipova IR. 2005. Penelope-like elements-a new class of retroelements: distribution, function and possible evolutionary significance. Cytogenet. Genome Res. 110:510-521. http://dx.doi.org/10.1159 /000084984.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 510-521
-
-
Evgen'ev, M.B.1
Arkhipova, I.R.2
-
92
-
-
34547182955
-
Telomere-associated endonucleasedeficient Penelope-like retroelements in diverse eukaryotes
-
Gladyshev EA, Arkhipova IR. 2007. Telomere-associated endonucleasedeficient Penelope-like retroelements in diverse eukaryotes. Proc. Natl. Acad. Sci. U. S. A. 104:9352-9357. http://dx.doi.org/10.1073/pnas. 0702741104.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 9352-9357
-
-
Gladyshev, E.A.1
Arkhipova, I.R.2
-
93
-
-
34248358963
-
Progress in understanding the biology of the human mutagen LINE-1
-
Babushok DV, Kazazian HH, Jr. 2007. Progress in understanding the biology of the human mutagen LINE-1. Hum. Mutat. 28:527-539. http: //dx.doi.org/10. 1002/humu.20486.
-
(2007)
Hum. Mutat.
, vol.28
, pp. 527-539
-
-
Babushok, D.V.1
Kazazian Jr., H.H.2
-
94
-
-
34250219964
-
L1 elements, processed pseudogenes and retrogenes in mammalian genomes
-
Ding W, Lin L, Chen B, Dai J. 2006. L1 elements, processed pseudogenes and retrogenes in mammalian genomes. IUBMB Life 58:677-685. http://dx.doi.org/ 10.1080/15216540601034856.
-
(2006)
IUBMB Life
, vol.58
, pp. 677-685
-
-
Ding, W.1
Lin, L.2
Chen, B.3
Dai, J.4
-
95
-
-
0029347105
-
Structure and function of apurinic/ apyrimidinic endonucleases
-
Barzilay G, Hickson ID. 1995. Structure and function of apurinic/ apyrimidinic endonucleases. Bioessays 17:713-719. http://dx.doi.org/10 .1002/bies.950170808.
-
(1995)
Bioessays
, vol.17
, pp. 713-719
-
-
Barzilay, G.1
Hickson, I.D.2
-
96
-
-
0029010778
-
Site-directed mutagenesis of the human DNA repair enzyme HAP1: Identification of residues important for AP endonuclease and RNase H activity
-
Barzilay G, Walker LJ, Robson CN, Hickson ID. 1995. Site-directed mutagenesis of the human DNA repair enzyme HAP1: identification of residues important for AP endonuclease and RNase H activity. Nucleic Acids Res. 23:1544-1550. http://dx.doi.org/10.1093/nar/23.9.1544.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 1544-1550
-
-
Barzilay, G.1
Walker, L.J.2
Robson, C.N.3
Hickson, I.D.4
-
97
-
-
23844460512
-
Ribonuclease H evolution in retrotransposable elements
-
Malik HS. 2005. Ribonuclease H evolution in retrotransposable elements. Cytogenet. Genome Res. 110:392-401. http://dx.doi.org/10.1159 /000084971.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 392-401
-
-
Malik, H.S.1
-
98
-
-
0026504248
-
Genetic diversity and evolution of retroviruses
-
Coffin JM. 1992. Genetic diversity and evolution of retroviruses. Curr. Top. Microbiol. Immunol. 176:143-164.
-
(1992)
Curr. Top. Microbiol. Immunol.
, vol.176
, pp. 143-164
-
-
Coffin, J.M.1
-
100
-
-
84861188188
-
Studies of endogenous retroviruses reveal a continuing evolutionary saga
-
Stoye JP. 2012. Studies of endogenous retroviruses reveal a continuing evolutionary saga. Nat. Rev. Microbiol. 10:395-406. http://dx.doi.org/10 .1038/nrmicro2783.
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 395-406
-
-
Stoye, J.P.1
-
101
-
-
84898673851
-
On the concept and elucidation of endogenous retroviruses
-
Weiss RA. 2013. On the concept and elucidation of endogenous retroviruses. Philos. Trans. R. Soc. Lond. B Biol. Sci. 368:20120494. http://dx .doi.org/10.1098/rstb.2012.0494.
-
(2013)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.368
, pp. 20120494
-
-
Weiss, R.A.1
-
103
-
-
44449111229
-
Taxonomy, molecular phylogeny and evolution of plant reverse transcribing viruses (family Caulimoviridae) inferred from full-length genome and reverse transcriptase sequences
-
Bousalem M, Douzery EJ, Seal SE. 2008. Taxonomy, molecular phylogeny and evolution of plant reverse transcribing viruses (family Caulimoviridae) inferred from full-length genome and reverse transcriptase sequences. Arch. Virol. 153: 1085-1102. http://dx.doi.org/10.1007/s00705-008-0095-9.
-
(2008)
Arch. Virol.
, vol.153
, pp. 1085-1102
-
-
Bousalem, M.1
Douzery, E.J.2
Seal, S.E.3
-
104
-
-
84878850500
-
The molecular virology of hepatitis B virus
-
Glebe D, BremerCM.2013. The molecular virology of hepatitis B virus. Semin. Liver Dis. 33:103-112. http://dx.doi.org/10.1055/s-0033-1345717.
-
(2013)
Semin. Liver Dis.
, vol.33
, pp. 103-112
-
-
Glebe, D.1
Bremer, C.M.2
-
105
-
-
74849135699
-
The classification and nomenclature of endogenous viruses of the family Caulimoviridae
-
Geering AD, Scharaschkin T, Teycheney PY. 2010. The classification and nomenclature of endogenous viruses of the family Caulimoviridae. Arch. Virol. 155:123-131. http://dx.doi.org/10.1007/s00705-009-0488-4.
-
(2010)
Arch. Virol.
, vol.155
, pp. 123-131
-
-
Geering, A.D.1
Scharaschkin, T.2
Teycheney, P.Y.3
-
106
-
-
34848851061
-
Endogenous pararetroviruses: Two-faced travelers in the plant genome
-
Staginnus C, Richert-Poggeler KR. 2006. Endogenous pararetroviruses: two-faced travelers in the plant genome. Trends Plant Sci. 11:485-491. http://dx.doi.org/10.1016/j.tplants.2006.08.008.
-
(2006)
Trends Plant Sci.
, vol.11
, pp. 485-491
-
-
Staginnus, C.1
Richert-Poggeler, K.R.2
-
107
-
-
0031451221
-
The evolution of Ty1-copia group retrotransposons in eukaryote genomes
-
Flavell AJ, Pearce SR, Heslop-Harrison P, Kumar A. 1997. The evolution of Ty1-copia group retrotransposons in eukaryote genomes. Genetica 100:185-195. http://dx.doi.org/10.1023/A:1018385713293.
-
(1997)
Genetica
, vol.100
, pp. 185-195
-
-
Flavell, A.J.1
Pearce, S.R.2
Heslop-Harrison, P.3
Kumar, A.4
-
108
-
-
0036854310
-
Genes of the Pseudoviridae (Ty1/ copia retrotransposons)
-
Peterson-Burch BD, Voytas DF. 2002. Genes of the Pseudoviridae (Ty1/ copia retrotransposons). Mol. Biol. Evol. 19:1832-1845. http://dx.doi .org/10.1093/oxfordjournals.molbev.a004008.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1832-1845
-
-
Peterson-Burch, B.D.1
Voytas, D.F.2
-
109
-
-
84874618441
-
LTR-retrotransposons in R
-
Piednoel M, Donnart T, Esnault C, Graca P, Higuet D, Bonnivard E. 2013. LTR-retrotransposons in R. exoculata and other crustaceans: the outstanding success of GalEa-like copia elements. PLoS One 8:e57675. http://dx.doi.org/10. 1371/journal.pone.0057675.
-
(2013)
Exoculata and Other Crustaceans: The Outstanding Success of GalEa-like Copia Elements. PLoS One
, vol.8
-
-
Piednoel, M.1
Donnart, T.2
Esnault, C.3
Graca, P.4
Higuet, D.5
Bonnivard, E.6
-
110
-
-
0033057257
-
Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons
-
Malik HS, Eickbush TH. 1999. Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons. J. Virol. 73: 5186-5190.
-
(1999)
J. Virol.
, vol.73
, pp. 5186-5190
-
-
Malik, H.S.1
Eickbush, T.H.2
-
111
-
-
0034917751
-
Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses
-
Malik HS, Eickbush TH. 2001. Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses. Genome Res. 11:1187-1197. http://dx.doi.org /10.1101/gr.185101.
-
(2001)
Genome Res.
, vol.11
, pp. 1187-1197
-
-
Malik, H.S.1
Eickbush, T.H.2
-
112
-
-
84879911640
-
A superfamily of DNA transposons targeting multicopy small RNA genes
-
Kojima KK, Jurka J. 2013. A superfamily of DNA transposons targeting multicopy small RNA genes. PLoS One 8:e68260. http://dx.doi.org/10 .1371/journal.pone.0068260.
-
(2013)
PLoS One
, vol.8
-
-
Kojima, K.K.1
Jurka, J.2
-
113
-
-
84901034589
-
From passengers to drivers: Impact of bacterial transposable elements on evolvability
-
Pal C, Papp B. 2013. From passengers to drivers: impact of bacterial transposable elements on evolvability. Mob. Genet. Elements 3:e23617. http://dx.doi.org/10.4161/mge.23617.
-
(2013)
Mob. Genet. Elements
, vol.3
-
-
Pal, C.1
Papp, B.2
-
115
-
-
77956352772
-
Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons
-
Bao W, Kapitonov VV, Jurka J. 2010. Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons. Mob. DNA 1:3. http://dx.doi.org/10.1186/1759-8753-1-3.
-
(2010)
Mob. DNA
, vol.1
, pp. 3
-
-
Bao, W.1
Kapitonov, V.V.2
Jurka, J.3
-
116
-
-
0036597631
-
Acquisition and loss of modules: The construction set of transposable elements
-
Capy P, Maisonhaute C. 2002. Acquisition and loss of modules: the construction set of transposable elements. Genetika 38:719-726.
-
(2002)
Genetika
, vol.38
, pp. 719-726
-
-
Capy, P.1
Maisonhaute, C.2
-
117
-
-
0035822688
-
A novel family of predicted retrovirallike aspartyl proteases with a possible key role in eukaryotic cell cycle control
-
Krylov DM, Koonin EV. 2001. A novel family of predicted retrovirallike aspartyl proteases with a possible key role in eukaryotic cell cycle control. Curr. Biol. 11:R584-R587. http://dx.doi.org/10.1016/S0960-9822(01)00357-8.
-
(2001)
Curr. Biol.
, vol.11
-
-
Krylov, D.M.1
Koonin, E.V.2
-
118
-
-
33750831567
-
Ddi1, a eukaryotic protein with the retroviral protease fold
-
Sirkis R, Gerst JE, Fass D. 2006. Ddi1, a eukaryotic protein with the retroviral protease fold. J. Mol. Biol. 364:376-387. http://dx.doi.org/10 .1016/j.jmb.2006.08.086.
-
(2006)
J. Mol. Biol.
, vol.364
, pp. 376-387
-
-
Sirkis, R.1
Gerst, J.E.2
Fass, D.3
-
119
-
-
11344286054
-
Mammalian SCAN domain dimer is a domain-swapped homolog of the HIV capsid C-terminal domain
-
Ivanov D, Stone JR, Maki JL, Collins T, Wagner G. 2005. Mammalian SCAN domain dimer is a domain-swapped homolog of the HIV capsid C-terminal domain. Mol. Cell 17:137-143. http://dx.doi.org/10.1016/j .molcel.2004.12.015.
-
(2005)
Mol. Cell
, vol.17
, pp. 137-143
-
-
Ivanov, D.1
Stone, J.R.2
Maki, J.L.3
Collins, T.4
Wagner, G.5
-
120
-
-
0037835613
-
The SCAN domain defines a large family of zinc finger transcription factors
-
Sander TL, Stringer KF, Maki JL, Szauter P, Stone JR, Collins T. 2003. The SCAN domain defines a large family of zinc finger transcription factors. Gene 310:29-38. http://dx.doi.org/10.1016/S0378-1119(03)00509-2.
-
(2003)
Gene
, vol.310
, pp. 29-38
-
-
Sander, T.L.1
Stringer, K.F.2
Maki, J.L.3
Szauter, P.4
Stone, J.R.5
Collins, T.6
-
121
-
-
55149097856
-
Relationships of gag-pol diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis
-
Llorens C, Fares MA, Moya A. 2008. Relationships of gag-pol diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis. BMC Evol. Biol. 8:276. http://dx.doi.org/10.1186/1471-2148-8-276.
-
(2008)
BMC Evol. Biol.
, vol.8
, pp. 276
-
-
Llorens, C.1
Fares, M.A.2
Moya, A.3
-
122
-
-
70350433443
-
Cellular genes derived from Gypsy/Ty3 retrotransposons in mammalian genomes
-
Volff JN. 2009. Cellular genes derived from Gypsy/Ty3 retrotransposons in mammalian genomes. Ann. N. Y. Acad. Sci. 1178:233-243. http://dx .doi.org/10.1111/j.1749-6632.2009.05005.x.
-
(2009)
Ann. N. Y. Acad. Sci.
, vol.1178
, pp. 233-243
-
-
Volff, J.N.1
-
123
-
-
0032871097
-
Retrotransposons and retroviruses: Analysis of the envelope gene
-
Lerat E, Capy P. 1999. Retrotransposons and retroviruses: analysis of the envelope gene. Mol. Biol. Evol. 16:1198-1207. http://dx.doi.org/10.1093 /oxfordjournals.molbev.a026210.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1198-1207
-
-
Lerat, E.1
Capy, P.2
-
124
-
-
0023055867
-
Amino acid sequence homology in gag region of reverse transcribing elements and the coat protein gene of cauliflower mosaic virus
-
Covey SN. 1986. Amino acid sequence homology in gag region of reverse transcribing elements and the coat protein gene of cauliflower mosaic virus. Nucleic Acids Res. 14:623-633. http://dx.doi.org/10.1093/nar/14 .2.623.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 623-633
-
-
Covey, S.N.1
-
125
-
-
0033199713
-
Did DNA replication evolve twice independently?
-
Leipe DD, Aravind L, Koonin EV. 1999. Did DNA replication evolve twice independently?. Nucleic Acids Res. 27:3389-3401. http://dx.doi .org/10.1093/nar/27.17.3389.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3389-3401
-
-
Leipe, D.D.1
Aravind, L.2
Koonin, E.V.3
-
126
-
-
77953692396
-
Origin and evolution of eukaryotic large nucleo-cytoplasmic DNA viruses
-
Koonin EV, Yutin N. 2010. Origin and evolution of eukaryotic large nucleo-cytoplasmic DNA viruses. Intervirology 53:284-292. http://dx .doi.org/10.1159/000312913.
-
(2010)
Intervirology
, vol.53
, pp. 284-292
-
-
Koonin, E.V.1
Yutin, N.2
-
127
-
-
14544275047
-
Plasmid rolling-circle replication: Highlights of two decades of research
-
Khan SA. 2005. Plasmid rolling-circle replication: highlights of two decades of research. Plasmid 53:126-136. http://dx.doi.org/10.1016/j .plasmid.2004.12.008.
-
(2005)
Plasmid
, vol.53
, pp. 126-136
-
-
Khan, S.A.1
-
128
-
-
84880509250
-
Breaking and joining single-stranded DNA: The HUH endonuclease superfamily
-
Chandler M, de la Cruz F, Dyda F, Hickman AB, Moncalian G, Ton-Hoang B. 2013. Breaking and joining single-stranded DNA: the HUH endonuclease superfamily. Nat. Rev. Microbiol. 11:525-538. http: //dx.doi.org/10.1038/ nrmicro3067.
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 525-538
-
-
Chandler, M.1
De La Cruz, F.2
Dyda, F.3
Hickman, A.B.4
Moncalian, G.5
Ton-Hoang, B.6
-
129
-
-
0026748738
-
Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria
-
Ilyina TV, Koonin EV. 1992. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res. 20: 3279-3285. http://dx.doi.org/10.1093/nar/20.13.3279.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3279-3285
-
-
Ilyina, T.V.1
Koonin, E.V.2
-
130
-
-
0027205506
-
Computer-assisted dissection of rolling circle DNA replication
-
Koonin EV, Ilyina TV. 1993. Computer-assisted dissection of rolling circle DNA replication. Biosystems 30:241-268. http://dx.doi.org/10 .1016/0303-2647(93)90074-M.
-
(1993)
Biosystems
, vol.30
, pp. 241-268
-
-
Koonin, E.V.1
Ilyina, T.V.2
-
131
-
-
0026733368
-
Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA replication initiator proteins
-
Koonin EV, Ilyina TV. 1992. Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA replication initiator proteins. J. Gen. Virol. 73:2763-2766. http://dx.doi.org/10.1099/0022-1317-73-10-2763.
-
(1992)
J. Gen. Virol.
, vol.73
, pp. 2763-2766
-
-
Koonin, E.V.1
Ilyina, T.V.2
-
132
-
-
67649628261
-
Geminiviruses: A tale of a plasmid becoming a virus
-
Krupovic M, Ravantti JJ, Bamford DH. 2009. Geminiviruses: a tale of a plasmid becoming a virus. BMC Evol. Biol. 9:112. http://dx.doi.org/10 .1186/1471-2148-9-112.
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 112
-
-
Krupovic, M.1
Ravantti, J.J.2
Bamford, D.H.3
-
133
-
-
79959581317
-
On the alleged origin of geminiviruses from extrachromosomal DNAs of phytoplasmas
-
Saccardo F, Cettul E, Palmano S, Noris E, Firrao G. 2011. On the alleged origin of geminiviruses from extrachromosomal DNAs of phytoplasmas. BMC Evol. Biol. 11:185. http://dx.doi.org/10.1186/1471-2148-11-185.
-
(2011)
BMC Evol. Biol.
, vol.11
, pp. 185
-
-
Saccardo, F.1
Cettul, E.2
Palmano, S.3
Noris, E.4
Firrao, G.5
-
134
-
-
84863838397
-
Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads
-
Roux S, Krupovic M, Poulet A, Debroas D, Enault F. 2012. Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads. PLoS One 7:e40418. http://dx.doi.org/10.1371/journal.pone.0040418.
-
(2012)
PLoS One
, vol.7
-
-
Roux, S.1
Krupovic, M.2
Poulet, A.3
Debroas, D.4
Enault, F.5
-
135
-
-
84857357891
-
Rapidly expanding genetic diversity and host range of the Circoviridae viral family and other Rep encoding small circular ssDNA genomes
-
Delwart E, Li L. 2012. Rapidly expanding genetic diversity and host range of the Circoviridae viral family and other Rep encoding small circular ssDNA genomes. Virus Res. 164:114-121. http://dx.doi.org/10 .1016/j.virusres.2011.11. 021.
-
(2012)
Virus Res.
, vol.164
, pp. 114-121
-
-
Delwart, E.1
Li, L.2
-
136
-
-
84867142649
-
A field guide to eukaryotic circular single-strandedDNAviruses: Insights gained from metagenomics
-
Rosario K, Duffy S, Breitbart M. 2012. A field guide to eukaryotic circular single-strandedDNAviruses: insights gained from metagenomics. Arch. Virol. 157:1851-1871. http://dx.doi.org/10.1007/s00705-012-1391-y.
-
(2012)
Arch. Virol.
, vol.157
, pp. 1851-1871
-
-
Rosario, K.1
Duffy, S.2
Breitbart, M.3
-
137
-
-
84859814245
-
A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses
-
Diemer GS, Stedman KM. 2012. A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses. Biol. Direct 7:13. http://dx.doi.org/10.1186 /1745-6150-7-13.
-
(2012)
Biol. Direct
, vol.7
, pp. 13
-
-
Diemer, G.S.1
Stedman, K.M.2
-
138
-
-
84889253615
-
Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses
-
Roux S, Enault F, Bronner G, Vaulot D, Forterre P, Krupovic M. 2013. Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses. Nat. Commun. 4:2700.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2700
-
-
Roux, S.1
Enault, F.2
Bronner, G.3
Vaulot, D.4
Forterre, P.5
Krupovic, M.6
-
139
-
-
33646872444
-
Two families of rep-like genes that probably originated by interspecies recombination are represented in viral, plasmid, bacterial, and parasitic protozoan genomes
-
Gibbs MJ, Smeianov VV, Steele JL, Upcroft P, Efimov BA. 2006. Two families of rep-like genes that probably originated by interspecies recombination are represented in viral, plasmid, bacterial, and parasitic protozoan genomes. Mol. Biol. Evol. 23:1097-1100. http://dx.doi.org/10.1093 /molbev/msj122.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 1097-1100
-
-
Gibbs, M.J.1
Smeianov, V.V.2
Steele, J.L.3
Upcroft, P.4
Efimov, B.A.5
-
140
-
-
84881145510
-
Mechanisms for RNA capture by ssDNA viruses: Grand theft RNA
-
Stedman K. 2013. Mechanisms for RNA capture by ssDNA viruses: grand theft RNA. J. Mol. Evol. 76:359-364. http://dx.doi.org/10.1007 /s00239-013-9569-9.
-
(2013)
J. Mol. Evol.
, vol.76
, pp. 359-364
-
-
Stedman, K.1
-
141
-
-
84863226687
-
Related haloarchaeal pleomorphic viruses contain different genome types
-
Sencilo A, Paulin L, Kellner S, Helm M, Roine E. 2012. Related haloarchaeal pleomorphic viruses contain different genome types. Nucleic Acids Res. 40:5523-5534. http://dx.doi.org/10.1093/nar/gks215.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5523-5534
-
-
Sencilo, A.1
Paulin, L.2
Kellner, S.3
Helm, M.4
Roine, E.5
-
142
-
-
79551496302
-
Plasmids, viruses and virus-like membrane vesicles from Thermococcales
-
Soler N, Gaudin M, Marguet E, Forterre P. 2011. Plasmids, viruses and virus-like membrane vesicles from Thermococcales. Biochem. Soc. Trans. 39:36-44. http://dx.doi.org/10.1042/BST0390036.
-
(2011)
Biochem. Soc. Trans.
, vol.39
, pp. 36-44
-
-
Soler, N.1
Gaudin, M.2
Marguet, E.3
Forterre, P.4
-
143
-
-
0033912362
-
IS1294, a DNA element that transposes by RC transposition
-
Tavakoli N, Comanducci A, Dodd HM, Lett MC, Albiger B, Bennett P. 2000. IS1294, a DNA element that transposes by RC transposition. Plasmid 44:66-84. http://dx.doi.org/10.1006/plas.1999.1460.
-
(2000)
Plasmid
, vol.44
, pp. 66-84
-
-
Tavakoli, N.1
Comanducci, A.2
Dodd, H.M.3
Lett, M.C.4
Albiger, B.5
Bennett, P.6
-
144
-
-
33745125702
-
ISCR elements: Novel gene-capturing systems of the 21st century?
-
Toleman MA, Bennett PM, Walsh TR. 2006. ISCR elements: novel gene-capturing systems of the 21st century?. Microbiol. Mol. Biol. Rev. 70:296-316. http://dx.doi.org/10.1128/MMBR.00048-05.
-
(2006)
Microbiol. Mol. Biol. Rev.
, vol.70
, pp. 296-316
-
-
Toleman, M.A.1
Bennett, P.M.2
Walsh, T.R.3
-
145
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte C, Pritham EJ. 2007. DNA transposons and the evolution of eukaryotic genomes. Annu. Rev. Genet. 41:331-368. http://dx.doi.org /10.1146/annurev.genet.40.110405.090448.
-
(2007)
Annu. Rev. Genet.
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
146
-
-
34848876954
-
Helitrons on a roll: Eukaryotic rollingcircle transposons
-
Kapitonov VV, Jurka J. 2007. Helitrons on a roll: eukaryotic rollingcircle transposons. Trends Genet. 23:521-529. http://dx.doi.org/10.1016 /j.tig.2007.08.004.
-
(2007)
Trends Genet.
, vol.23
, pp. 521-529
-
-
Kapitonov, V.V.1
Jurka, J.2
-
147
-
-
0035902449
-
Rolling-circle transposons in eukaryotes
-
Kapitonov VV, Jurka J. 2001. Rolling-circle transposons in eukaryotes. Proc. Natl. Acad. Sci. U. S. A. 98:8714-8719. http://dx.doi.org/10.1073 /pnas.151269298.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 8714-8719
-
-
Kapitonov, V.V.1
Jurka, J.2
-
148
-
-
80053371346
-
Widespread horizontal gene transfer from circular singlestranded DNA viruses to eukaryotic genomes
-
Liu H, Fu Y, Li B, Yu X, Xie J, Cheng J, Ghabrial SA, Li G, Yi X, Jiang D. 2011. Widespread horizontal gene transfer from circular singlestranded DNA viruses to eukaryotic genomes. BMC Evol. Biol. 11:276. http://dx.doi.org/10. 1186/1471-2148-11-276.
-
(2011)
BMC Evol. Biol.
, vol.11
, pp. 276
-
-
Liu, H.1
Fu, Y.2
Li, B.3
Yu, X.4
Xie, J.5
Cheng, J.6
Ghabrial, S.A.7
Li, G.8
Yi, X.9
Jiang, D.10
-
149
-
-
78650652308
-
A dimeric Rep protein initiates replication of a linear archaeal virus genome: Implications for the Rep mechanism and viral replication
-
Oke M, Kerou M, Liu H, Peng X, Garrett RA, Prangishvili D, Naismith JH, White MF. 2011. A dimeric Rep protein initiates replication of a linear archaeal virus genome: implications for the Rep mechanism and viral replication. J. Virol. 85:925-931. http://dx.doi.org/10.1128/JVI .01467-10.
-
(2011)
J. Virol.
, vol.85
, pp. 925-931
-
-
Oke, M.1
Kerou, M.2
Liu, H.3
Peng, X.4
Garrett, R.A.5
Prangishvili, D.6
Naismith, J.H.7
White, M.F.8
-
150
-
-
34548187473
-
Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteria
-
Krupovic M, Bamford DH. 2007. Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteria. BMC Genomics 8:236. http://dx.doi.org/10.1186/1471-2164-8-236.
-
(2007)
BMC Genomics
, vol.8
, pp. 236
-
-
Krupovic, M.1
Bamford, D.H.2
-
151
-
-
0035957520
-
The two active-site tyrosine residues of the a protein play non-equivalent roles during initiation of rolling circle replication of bacteriophage p2
-
Odegrip R, Haggard-Ljungquist E. 2001. The two active-site tyrosine residues of the a protein play non-equivalent roles during initiation of rolling circle replication of bacteriophage p2. J. Mol. Biol. 308:147-163. http://dx.doi.org/10.1006/jmbi.2001.4607.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 147-163
-
-
Odegrip, R.1
Haggard-Ljungquist, E.2
-
152
-
-
0037453721
-
Global phage diversity
-
Rohwer F. 2003. Global phage diversity. Cell 113:141. http://dx.doi.org /10.1016/S0092-8674(03)00276-9.
-
(2003)
Cell
, vol.113
, pp. 141
-
-
Rohwer, F.1
-
153
-
-
34548792911
-
Marine viruses-major players in the global ecosystem
-
Suttle CA. 2007. Marine viruses-major players in the global ecosystem. Nat. Rev. Microbiol. 5:801-812. http://dx.doi.org/10.1038/nrmicro1750.
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
154
-
-
84888016591
-
"Megavirales," a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses
-
Colson P, De Lamballerie X, Yutin N, Asgari S, Bigot Y, Bideshi DK, Cheng XW, Federici BA, Van Etten JL, Koonin EV, La Scola B, Raoult D. 2013. "Megavirales," a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses. Arch. Virol. 158:2517-2521. http://dx.doi .org/10.1007/s00705-013-1768-6.
-
(2013)
Arch. Virol.
, vol.158
, pp. 2517-2521
-
-
Colson, P.1
De Lamballerie, X.2
Yutin, N.3
Asgari, S.4
Bigot, Y.5
Bideshi, D.K.6
Cheng, X.W.7
Federici, B.A.8
Van Etten, J.L.9
Koonin, E.V.10
La Scola, B.11
Raoult, D.12
-
155
-
-
38449084519
-
Repetitive sequences in complex genomes: Structure and evolution
-
Jurka J, Kapitonov VV, Kohany O, Jurka MV. 2007. Repetitive sequences in complex genomes: structure and evolution. Annu. Rev. Genomics Hum. Genet. 8:241-259. http://dx.doi.org/10.1146/annurev .genom.8.080706.092416.
-
(2007)
Annu. Rev. Genomics Hum. Genet.
, vol.8
, pp. 241-259
-
-
Jurka, J.1
Kapitonov, V.V.2
Kohany, O.3
Jurka, M.V.4
-
156
-
-
33645227457
-
Self-synthesizing DNA transposons in eukaryotes
-
Kapitonov VV, Jurka J. 2006. Self-synthesizing DNA transposons in eukaryotes. Proc. Natl. Acad. Sci. U. S. A. 103:4540-4545. http://dx.doi .org/10.1073/pnas.0600833103.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 4540-4545
-
-
Kapitonov, V.V.1
Jurka, J.2
-
157
-
-
33846939973
-
Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related toDNAviruses
-
Pritham EJ, Putliwala T, Feschotte C. 2007. Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related toDNAviruses. Gene 390:3-17. http://dx.doi.org/10.1016/j.gene.2006.08.008.
-
(2007)
Gene
, vol.390
, pp. 3-17
-
-
Pritham, E.J.1
Putliwala, T.2
Feschotte, C.3
-
158
-
-
84858163750
-
Sputnik, a virophage infecting the viral domain of life
-
Desnues C, Boyer M, Raoult D. 2012. Sputnik, a virophage infecting the viral domain of life. Adv. Virus Res. 82:63-89. http://dx.doi.org/10.1016 /B978-0-12-394621-8.00013-3.
-
(2012)
Adv. Virus Res.
, vol.82
, pp. 63-89
-
-
Desnues, C.1
Boyer, M.2
Raoult, D.3
-
159
-
-
78650627880
-
Giant virus with a remarkable complement of genes infects marine zooplankton
-
Fischer MG, Allen MJ, Wilson WH, Suttle CA. 2010. Giant virus with a remarkable complement of genes infects marine zooplankton. Proc. Natl. Acad. Sci. U. S. A. 107:19508-19513. http://dx.doi.org/10.1073 /pnas.1007615107.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 19508-19513
-
-
Fischer, M.G.1
Allen, M.J.2
Wilson, W.H.3
Suttle, C.A.4
-
160
-
-
79953806385
-
A virophage at the origin of large DNA transposons
-
Fischer MG, Suttle CA. 2011. A virophage at the origin of large DNA transposons. Science 332:231-234. http://dx.doi.org/10.1126/science .1199412.
-
(2011)
Science
, vol.332
, pp. 231-234
-
-
Fischer, M.G.1
Suttle, C.A.2
-
161
-
-
51349125147
-
The virophage as a unique parasite of the giant mimivirus
-
La Scola B, Desnues C, Pagnier I, Robert C, Barrassi L, Fournous G, Merchat M, Suzan-Monti M, Forterre P, Koonin E, Raoult D. 2008. The virophage as a unique parasite of the giant mimivirus. Nature 455: 100-104. http://dx.doi.org/10.1038/nature07218.
-
(2008)
Nature
, vol.455
, pp. 100-104
-
-
La Scola, B.1
Desnues, C.2
Pagnier, I.3
Robert, C.4
Barrassi, L.5
Fournous, G.6
-
162
-
-
79955006806
-
Virophage control of Antarctic algal host-virus dynamics
-
Yau S, Lauro FM, DeMaere MZ, Brown MV, Thomas T, Raftery MJ, Andrews-Pfannkoch C, Lewis M, Hoffman JM, Gibson JA, Cavicchioli R. 2011. Virophage control of Antarctic algal host-virus dynamics. Proc. Natl. Acad. Sci. U. S. A. 108:6163-6168. http://dx.doi.org/10.1073/pnas .1018221108.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 6163-6168
-
-
Yau, S.1
Lauro, F.M.2
Demaere, M.Z.3
Brown, M.V.4
Thomas, T.5
Raftery, M.J.6
Andrews-Pfannkoch, C.7
Lewis, M.8
Hoffman, J.M.9
Gibson, J.A.10
Cavicchioli, R.11
-
163
-
-
84875689946
-
Mimiviridae: Clusters of orthologous genes, reconstruction of gene repertoire evolution and proposed expansion of the giant virus family
-
Yutin N, Colson P, Raoult D, Koonin EV. 2013. Mimiviridae: clusters of orthologous genes, reconstruction of gene repertoire evolution and proposed expansion of the giant virus family. Virol. J. 10:106. http://dx .doi.org/10.1186/1743-422X-10-106.
-
(2013)
Virol. J.
, vol.10
, pp. 106
-
-
Yutin, N.1
Colson, P.2
Raoult, D.3
Koonin, E.V.4
-
164
-
-
84875777180
-
Diversity of virophages in metagenomic data sets
-
Zhou J, Zhang W, Yan S, Xiao J, Zhang Y, Li B, Pan Y, Wang Y. 2013. Diversity of virophages in metagenomic data sets. J. Virol. 87:4225-4236. http://dx.doi.org/10.1128/JVI.03398-12.
-
(2013)
J. Virol.
, vol.87
, pp. 4225-4236
-
-
Zhou, J.1
Zhang, W.2
Yan, S.3
Xiao, J.4
Zhang, Y.5
Li, B.6
Pan, Y.7
Wang, Y.8
-
165
-
-
84861459625
-
Reclassification of giant viruses composing a fourth domain of life in the new order Megavirales
-
Colson P, de Lamballerie X, Fournous G, Raoult D. 2012. Reclassification of giant viruses composing a fourth domain of life in the new order Megavirales. Intervirology 55:321-332. http://dx.doi.org/10.1159/000336562.
-
(2012)
Intervirology
, vol.55
, pp. 321-332
-
-
Colson, P.1
De Lamballerie, X.2
Fournous, G.3
Raoult, D.4
-
166
-
-
0035167322
-
Common origin of four diverse families of large eukaryotic DNA viruses
-
Iyer LM, Aravind L, Koonin EV. 2001. Common origin of four diverse families of large eukaryotic DNA viruses. J. Virol. 75:11720-11734. http: //dx.doi.org/10.1128/JVI.75.23.11720-11734.2001.
-
(2001)
J. Virol.
, vol.75
, pp. 11720-11734
-
-
Iyer, L.M.1
Aravind, L.2
Koonin, E.V.3
-
167
-
-
84868146121
-
Provirophages and transpovirons as the diverse mobilome of giant viruses
-
Desnues C, La Scola B, Yutin N, Fournous G, Robert C, Azza S, Jardot P, Monteil S, Campocasso A, Koonin EV, Raoult D. 2012. Provirophages and transpovirons as the diverse mobilome of giant viruses. Proc. Natl. Acad. Sci. U. S. A. 109:18078-18083. http://dx.doi.org/10 .1073/pnas.1208835109.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 18078-18083
-
-
Desnues, C.1
La Scola, B.2
Yutin, N.3
Fournous, G.4
Robert, C.5
Azza, S.6
Jardot, P.7
Monteil, S.8
Campocasso, A.9
Koonin, E.V.10
Raoult, D.11
-
168
-
-
0032828523
-
The genetic element pSSVx of the extremely thermophilic crenarchaeon Sulfolobus is a hybrid between a plasmid and a virus
-
Arnold HP, She Q, Phan H, Stedman K, Prangishvili D, Holz I, Kristjansson JK, Garrett R, Zillig W. 1999. The genetic element pSSVx of the extremely thermophilic crenarchaeon Sulfolobus is a hybrid between a plasmid and a virus. Mol. Microbiol. 34:217-226. http://dx.doi .org/10.1046/j.1365-2958.1999.01573.x.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 217-226
-
-
Arnold, H.P.1
She, Q.2
Phan, H.3
Stedman, K.4
Prangishvili, D.5
Holz, I.6
Kristjansson, J.K.7
Garrett, R.8
Zillig, W.9
-
169
-
-
34247565507
-
A novel Sulfolobus non-conjugative extrachromosomal genetic element capable of integration into the host genome and spreading in the presence of a fusellovirus
-
Wang Y, Duan Z, Zhu H, Guo X, Wang Z, Zhou J, She Q, Huang L. 2007. A novel Sulfolobus non-conjugative extrachromosomal genetic element capable of integration into the host genome and spreading in the presence of a fusellovirus. Virology 363:124-133. http://dx.doi.org/10 .1016/j.virol.2007.01. 035.
-
(2007)
Virology
, vol.363
, pp. 124-133
-
-
Wang, Y.1
Duan, Z.2
Zhu, H.3
Guo, X.4
Wang, Z.5
Zhou, J.6
She, Q.7
Huang, L.8
-
170
-
-
37249080252
-
Linear plasmids in plant mitochondria: Peaceful coexistences or malicious invasions?
-
Handa H. 2008. Linear plasmids in plant mitochondria: peaceful coexistences or malicious invasions?. Mitochondrion 8:15-25. http://dx.doi .org/10.1016/j.mito.2007.10.002.
-
(2008)
Mitochondrion
, vol.8
, pp. 15-25
-
-
Handa, H.1
-
171
-
-
0027217643
-
Compilation, alignment, and phylogenetic relationships of DNA polymerases
-
Braithwaite DK, Ito J. 1993. Compilation, alignment, and phylogenetic relationships of DNA polymerases. Nucleic Acids Res. 21:787-802. http: //dx.doi.org/10.1093/nar/21.4.787.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 787-802
-
-
Braithwaite, D.K.1
Ito, J.2
-
172
-
-
33744460783
-
Autonomous cytoplasmic linear plasmid pPac1-1 of Pichia acaciae: Molecular structure and expression studies
-
Jeske S, Meinhardt F. 2006. Autonomous cytoplasmic linear plasmid pPac1-1 of Pichia acaciae: molecular structure and expression studies. Yeast 23:479-486. http://dx.doi.org/10.1002/yea.1367.
-
(2006)
Yeast
, vol.23
, pp. 479-486
-
-
Jeske, S.1
Meinhardt, F.2
-
173
-
-
0035201941
-
Structure, mechanism, and evolution of the mRNA capping apparatus
-
Shuman S. 2001. Structure, mechanism, and evolution of the mRNA capping apparatus. Prog. Nucleic Acid Res. Mol. Biol. 66:1-40.
-
(2001)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.66
, pp. 1-40
-
-
Shuman, S.1
-
174
-
-
0027133099
-
Two putative African swine fever virus helicases similar to yeast 'DEAH' pre-mRNA processing proteins and vaccinia virus ATPases D11L and D6R
-
Yanez RJ, Rodriguez JM, Boursnell M, Rodriguez JF, Vinuela E. 1993. Two putative African swine fever virus helicases similar to yeast 'DEAH' pre-mRNA processing proteins and vaccinia virus ATPases D11L and D6R. Gene 134:161-174. http://dx.doi.org/10.1016/0378-1119(93)90090-P.
-
(1993)
Gene
, vol.134
, pp. 161-174
-
-
Yanez, R.J.1
Rodriguez, J.M.2
Boursnell, M.3
Rodriguez, J.F.4
Vinuela, E.5
-
175
-
-
33750474440
-
DNA replication in phage P4: Characterization of replicon II
-
Magnoni F, Sala C, Forti F, Deho G, Ghisotti D. 2006. DNA replication in phage P4: characterization of replicon II. Plasmid 56:216-222. http: //dx.doi.org/10.1016/j.plasmid.2006.06.004.
-
(2006)
Plasmid
, vol.56
, pp. 216-222
-
-
Magnoni, F.1
Sala, C.2
Forti, F.3
Deho, G.4
Ghisotti, D.5
-
176
-
-
79551484126
-
N15: The linear phage-plasmid
-
Ravin NV. 2011. N15: the linear phage-plasmid. Plasmid 65:102-109. http://dx.doi.org/10.1016/j.plasmid.2010.12.004.
-
(2011)
Plasmid
, vol.65
, pp. 102-109
-
-
Ravin, N.V.1
-
177
-
-
84870676702
-
Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205
-
Zhang Z, Liu Y, Wang S, Yang D, Cheng Y, Hu J, Chen J, Mei Y, Shen P, Bamford DH, Chen X. 2012. Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205. Virology 434:233-241. http://dx.doi.org/10.1016/j .virol.2012.05.036.
-
(2012)
Virology
, vol.434
, pp. 233-241
-
-
Zhang, Z.1
Liu, Y.2
Wang, S.3
Yang, D.4
Cheng, Y.5
Hu, J.6
Chen, J.7
Mei, Y.8
Shen, P.9
Bamford, D.H.10
Chen, X.11
-
178
-
-
0036185932
-
Genetic requirements for the episomal maintenance of oncogenic herpesvirus genomes
-
Collins CM, Medveczky PG. 2002. Genetic requirements for the episomal maintenance of oncogenic herpesvirus genomes. Adv. Cancer Res. 84:155-174. http://dx.doi.org/10.1016/S0065-230X(02)84005-2.
-
(2002)
Adv. Cancer Res.
, vol.84
, pp. 155-174
-
-
Collins, C.M.1
Medveczky, P.G.2
-
179
-
-
70350460249
-
The great billion-year war between ribosome- and capsid-encoding organisms (cells and viruses) as the major source of evolutionary novelties
-
Forterre P, Prangishvili D. 2009. The great billion-year war between ribosome- and capsid-encoding organisms (cells and viruses) as the major source of evolutionary novelties. Ann. N. Y. Acad. Sci. 1178:65-77. http://dx.doi.org/10.1111/j.1749-6632.2009.04993.x.
-
(2009)
Ann. N. Y. Acad. Sci.
, vol.1178
, pp. 65-77
-
-
Forterre, P.1
Prangishvili, D.2
-
180
-
-
0031582708
-
From replicators to reproducers: The first major transitions leading to life
-
Szathmary E, Maynard Smith J. 1997. From replicators to reproducers: the first major transitions leading to life. J. Theor. Biol. 187:555-571. http://dx.doi.org/10.1006/jtbi.1996.0389.
-
(1997)
J. Theor. Biol.
, vol.187
, pp. 555-571
-
-
Szathmary, E.1
Maynard Smith, J.2
-
181
-
-
44249094377
-
Evolution of complexity in RNA-like replicator systems
-
Takeuchi N, Hogeweg P. 2008. Evolution of complexity in RNA-like replicator systems. Biol. Direct 3:11. http://dx.doi.org/10.1186/1745-6150-3-11.
-
(2008)
Biol. Direct
, vol.3
, pp. 11
-
-
Takeuchi, N.1
Hogeweg, P.2
-
182
-
-
84867143377
-
Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life
-
Takeuchi N, Hogeweg P. 2012. Evolutionary dynamics of RNA-like replicator systems: a bioinformatic approach to the origin of life. Phys. Life Rev. 9:219-263. http://dx.doi.org/10.1016/j.plrev.2012.06.001.
-
(2012)
Phys. Life Rev.
, vol.9
, pp. 219-263
-
-
Takeuchi, N.1
Hogeweg, P.2
-
183
-
-
79953652239
-
On the origin of DNA genomes: Evolution of the division of labor between template and catalyst in model replicator systems
-
Takeuchi N, Hogeweg P, Koonin EV. 2011. On the origin of DNA genomes: evolution of the division of labor between template and catalyst in model replicator systems. PLoS Comput. Biol. 7:e1002024. http://dx .doi.org/10.1371/journal.pcbi.1002024.
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Takeuchi, N.1
Hogeweg, P.2
Koonin, E.V.3
-
184
-
-
27744591844
-
On the origin of genomes and cells within inorganic compartments
-
Koonin EV, Martin W. 2005. On the origin of genomes and cells within inorganic compartments. Trends Genet. 21:647-654. http://dx.doi.org /10.1016/j.tig.2005.09.006.
-
(2005)
Trends Genet.
, vol.21
, pp. 647-654
-
-
Koonin, E.V.1
Martin, W.2
-
185
-
-
34548311711
-
Forty years of in vitro evolution
-
Joyce GF. 2007. Forty years of in vitro evolution. Angew. Chem. Int. Ed. Engl. 46:6420-6436. http://dx.doi.org/10.1002/anie.200701369.
-
(2007)
Angew. Chem. Int. Ed. Engl.
, vol.46
, pp. 6420-6436
-
-
Joyce, G.F.1
-
186
-
-
0015633612
-
Complete nucleotide sequence of a replicating RNA molecule
-
Mills DR, Kramer FR, Spiegelman S. 1973. Complete nucleotide sequence of a replicating RNA molecule. Science 180:916-927. http://dx .doi.org/10.1126/ science.180.4089.916.
-
(1973)
Science
, vol.180
, pp. 916-927
-
-
Mills, D.R.1
Kramer, F.R.2
Spiegelman, S.3
-
187
-
-
2342587458
-
30 years later - A new approach to Sol Spiegelman's and Leslie Orgel's in vitro evolutionary studies. Dedicated to Leslie Orgel on the occasion of his 70th birthday
-
Oehlenschlager F, Eigen M. 1997. 30 years later-a new approach to Sol Spiegelman's and Leslie Orgel's in vitro evolutionary studies. Dedicated to Leslie Orgel on the occasion of his 70th birthday. Orig. Life Evol. Biosph. 27:437-457. http://dx.doi.org/10.1023/A:1006501326129.
-
(1997)
Orig. Life Evol. Biosph.
, vol.27
, pp. 437-457
-
-
Oehlenschlager, F.1
Eigen, M.2
-
188
-
-
84974325243
-
An approach to the experimental analysis of precellular evolution
-
Spiegelman S. 1971. An approach to the experimental analysis of precellular evolution. Q. Rev. Biophys. 4:213-253. http://dx.doi.org/10.1017 /S0033583500000639.
-
(1971)
Q. Rev. Biophys.
, vol.4
, pp. 213-253
-
-
Spiegelman, S.1
-
189
-
-
0025889752
-
Subviral pathogens of plants: Viroids and viroidlike satellite RNAs
-
Diener TO. 1991. Subviral pathogens of plants: viroids and viroidlike satellite RNAs. FASEB J. 5:2808-2813.
-
(1991)
FASEB J.
, vol.5
, pp. 2808-2813
-
-
Diener, T.O.1
-
190
-
-
24944468730
-
Viroids and viroid-host interactions
-
Flores R, Hernandez C, Martinez de Alba AE, Daros JA, Di Serio F. 2005. Viroids and viroid-host interactions. Annu. Rev. Phytopathol. 43: 117-139. http://dx.doi.org/10.1146/annurev.phyto.43.040204.140243.
-
(2005)
Annu. Rev. Phytopathol.
, vol.43
, pp. 117-139
-
-
Flores, R.1
Hernandez, C.2
Martinez De Alba, A.E.3
Daros, J.A.4
Di Serio, F.5
-
191
-
-
84865517508
-
Viroids and hepatitis delta virus
-
Flores R, Ruiz-Ruiz S, Serra P. 2012. Viroids and hepatitis delta virus. Semin. Liver Dis. 32:201-210. http://dx.doi.org/10.1055/s-0032-1323624.
-
(2012)
Semin. Liver Dis.
, vol.32
, pp. 201-210
-
-
Flores, R.1
Ruiz-Ruiz, S.2
Serra, P.3
-
192
-
-
77949421377
-
Origin of hepatitis delta virus
-
Taylor J, Pelchat M. 2010. Origin of hepatitis delta virus. Future Microbiol. 5:393-402. http://dx.doi.org/10.2217/fmb.10.15.
-
(2010)
Future Microbiol.
, vol.5
, pp. 393-402
-
-
Taylor, J.1
Pelchat, M.2
-
193
-
-
84877267452
-
Evolution of microbes and viruses: A paradigm shift in evolutionary biology?
-
Koonin EV, Wolf YI. 2012. Evolution of microbes and viruses: a paradigm shift in evolutionary biology?. Front. Cell Infect. Microbiol. 2:119. http://dx.doi.org/10.3389/fcimb.2012.00119.
-
(2012)
Front. Cell Infect. Microbiol.
, vol.2
, pp. 119
-
-
Koonin, E.V.1
Wolf, Y.I.2
-
194
-
-
0025344593
-
The three-dimensional structure of the bacterial virus MS2
-
Valegard K, Liljas L, Fridborg K, Unge T. 1990. The three-dimensional structure of the bacterial virus MS2. Nature 345:36-41. http://dx.doi.org /10.1038/345036a0.
-
(1990)
Nature
, vol.345
, pp. 36-41
-
-
Valegard, K.1
Liljas, L.2
Fridborg, K.3
Unge, T.4
-
195
-
-
0036790008
-
The origin of DNA genomes and DNA replication proteins
-
Forterre P. 2002. The origin of DNA genomes and DNA replication proteins. Curr. Opin. Microbiol. 5:525-532. http://dx.doi.org/10.1016 /S1369-5274(02)00360-0.
-
(2002)
Curr. Opin. Microbiol.
, vol.5
, pp. 525-532
-
-
Forterre, P.1
-
196
-
-
24744450331
-
The two ages of the RNA world, and the transition to the DNA world: A story of viruses and cells
-
Forterre P. 2005. The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells. Biochimie 87:793-803. http: //dx.doi.org/10.1016/j.biochi.2005.03.015.
-
(2005)
Biochimie
, vol.87
, pp. 793-803
-
-
Forterre, P.1
-
198
-
-
0242386452
-
Tracing the evolution of gene loss in obligate bacterial symbionts
-
Moran NA. 2003. Tracing the evolution of gene loss in obligate bacterial symbionts. Curr. Opin. Microbiol. 6:512-518. http://dx.doi.org/10.1016 /j.mib.2003.08.001.
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, pp. 512-518
-
-
Moran, N.A.1
-
199
-
-
58449125407
-
Genomics and evolution of heritable bacterial symbionts
-
Moran NA, McCutcheon JP, Nakabachi A. 2008. Genomics and evolution of heritable bacterial symbionts. Annu. Rev. Genet. 42:165-190. http://dx.doi.org/10.1146/annurev.genet.41.110306.130119.
-
(2008)
Annu. Rev. Genet.
, vol.42
, pp. 165-190
-
-
Moran, N.A.1
McCutcheon, J.P.2
Nakabachi, A.3
-
200
-
-
65849420352
-
Hydrogenosomes and mitosomes: Conservation and evolution of functions
-
van der Giezen M. 2009. Hydrogenosomes and mitosomes: conservation and evolution of functions. J. Eukaryot. Microbiol. 56:221-231. http://dx.doi.org/ 10.1111/j.1550-7408.2009.00407.x.
-
(2009)
J. Eukaryot. Microbiol.
, vol.56
, pp. 221-231
-
-
Van Der Giezen, M.1
-
201
-
-
72949103741
-
New dimensions of the virus world discovered through metagenomics
-
Kristensen DM, Mushegian AR, Dolja VV, Koonin EV. 2010. New dimensions of the virus world discovered through metagenomics. Trends Microbiol. 18:11-19. http://dx.doi.org/10.1016/j.tim.2009.11.003.
-
(2010)
Trends Microbiol.
, vol.18
, pp. 11-19
-
-
Kristensen, D.M.1
Mushegian, A.R.2
Dolja, V.V.3
Koonin, E.V.4
-
202
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. 2005. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110:462-467. http://dx.doi.org/10.1159 /000084979.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
|