메뉴 건너뛰기




Volumn 180, Issue 17, 1998, Pages 4360-4369

Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROBENZENE;

EID: 0031751325     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.180.17.4360-4369.1998     Document Type: Article
Times cited : (126)

References (37)
  • 2
    • 0026480991 scopus 로고
    • Chromosomal insertion sites for phages and plasmids
    • Campbell, A. M. 1992. Chromosomal insertion sites for phages and plasmids. J. Bacteriol. 174:7495-7499.
    • (1992) J. Bacteriol. , vol.174 , pp. 7495-7499
    • Campbell, A.M.1
  • 3
    • 0020622983 scopus 로고
    • Genetic homology between independently isolated chlorobenzoate degradative plasmids
    • Chatterjee, D. K., and A. M. Chakrabarty. 1983. Genetic homology between independently isolated chlorobenzoate degradative plasmids. J. Bacteriol. 153:532-534.
    • (1983) J. Bacteriol. , vol.153 , pp. 532-534
    • Chatterjee, D.K.1    Chakrabarty, A.M.2
  • 4
    • 0028877016 scopus 로고
    • A role for bacteriophages in the evolution and transfer of bacterial virulence determinants
    • Cheetham, B. F., and M. E. Katz. 1995. A role for bacteriophages in the evolution and transfer of bacterial virulence determinants. Mol. Microbiol. 18:201-208.
    • (1995) Mol. Microbiol. , vol.18 , pp. 201-208
    • Cheetham, B.F.1    Katz, M.E.2
  • 5
    • 0027389217 scopus 로고
    • Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocatechol operon in Pseudomonas putida
    • Coco, W. M., R. K. Rothmel, S. Henikoff, and A. M. Chakrabarty. 1993. Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocatechol operon in Pseudomonas putida. J. Bacteriol. 175:417-427.
    • (1993) J. Bacteriol. , vol.175 , pp. 417-427
    • Coco, W.M.1    Rothmel, R.K.2    Henikoff, S.3    Chakrabarty, A.M.4
  • 6
    • 0021957751 scopus 로고
    • Genetic and physical map of the 2,4-dichlorophenoxyacetic acid degradative plasmid pJP4
    • Don, R. H., and J. M. Pemberton. 1985. Genetic and physical map of the 2,4-dichlorophenoxyacetic acid degradative plasmid pJP4. J. Bacteriol. 161: 466-468.
    • (1985) J. Bacteriol. , vol.161 , pp. 466-468
    • Don, R.H.1    Pemberton, J.M.2
  • 7
    • 0016156623 scopus 로고
    • Isolation and characterization of a 3-chlorohenzoate degrading pseudomonad
    • Dorn, E., M. Hellwig, W. Reineke, and H.-J. Knackmuss. 1974. Isolation and characterization of a 3-chlorohenzoate degrading pseudomonad. Arch. Microbiol. 99:61-70.
    • (1974) Arch. Microbiol. , vol.99 , pp. 61-70
    • Dorn, E.1    Hellwig, M.2    Reineke, W.3    Knackmuss, H.-J.4
  • 8
    • 0005536404 scopus 로고
    • Molecular and functional analysis of the TOL plasmid pWW0 from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring-cleavage pathway
    • Franklin, F. C. H., M. Bagdasarian, M. M. Bagdasarian, and K. N. Timmis. 1981. Molecular and functional analysis of the TOL plasmid pWW0 from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring-cleavage pathway. Proc. Natl. Acad. Sci. USA 78:7458-7462.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 7458-7462
    • Franklin, F.C.H.1    Bagdasarian, M.2    Bagdasarian, M.M.3    Timmis, K.N.4
  • 9
    • 0023374169 scopus 로고
    • Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation
    • Frantz, B., and A. M. Chakrabarty. 1987. Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation. Proc. Natl. Acad. Sci. USA 84:4460-4464.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 4460-4464
    • Frantz, B.1    Chakrabarty, A.M.2
  • 10
    • 0026396170 scopus 로고
    • Toxicity of chlorobenzene on Pseudomonas sp. strain RHO1, a chlorobenzene-degrading strain
    • Fritz, H., W. Reineke, and E. Schmidt. 1991. Toxicity of chlorobenzene on Pseudomonas sp. strain RHO1, a chlorobenzene-degrading strain. Biodegradation 2:165-170.
    • (1991) Biodegradation , vol.2 , pp. 165-170
    • Fritz, H.1    Reineke, W.2    Schmidt, E.3
  • 11
    • 0025731853 scopus 로고
    • Transfer and expression of the catabolic plasmid pBRC60 in wild bacterial recipients in a freshwater ecosystem
    • Fulthorpe, R. R., and R. C. Wyndham. 1991. Transfer and expression of the catabolic plasmid pBRC60 in wild bacterial recipients in a freshwater ecosystem. Appl. Environ. Microbiol. 57:1546-1553.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 1546-1553
    • Fulthorpe, R.R.1    Wyndham, R.C.2
  • 12
    • 0028786073 scopus 로고
    • Recombination between chromosomal IS200 elements supports frequent duplication formation in Salmonella typhimurium
    • Haack, K. R., and J. R. Roth. 1995. Recombination between chromosomal IS200 elements supports frequent duplication formation in Salmonella typhimurium. Genetics 141:1245-1252.
    • (1995) Genetics , vol.141 , pp. 1245-1252
    • Haack, K.R.1    Roth, J.R.2
  • 13
    • 0022297242 scopus 로고
    • Stable gene amplification in the chromosome of Bacillus subtilis
    • Janniere, L., B. Niaudet, E. Pierre, and S. D. Ehrlich. 1985. Stable gene amplification in the chromosome of Bacillus subtilis. Gene 40:47-55.
    • (1985) Gene , vol.40 , pp. 47-55
    • Janniere, L.1    Niaudet, B.2    Pierre, E.3    Ehrlich, S.D.4
  • 14
    • 0020046839 scopus 로고
    • Excision and integration of degradative pathway genes from TOL plasmid pWW0
    • Jeenes, D. J., and P. A. Williams. 1982. Excision and integration of degradative pathway genes from TOL plasmid pWW0. J. Bacteriol. 150:188-194.
    • (1982) J. Bacteriol. , vol.150 , pp. 188-194
    • Jeenes, D.J.1    Williams, P.A.2
  • 15
    • 0028016273 scopus 로고
    • Integration and excision of a 2,4-dichlorophenoxyacetic acid degradative plasmid in Alcaligenes paradoxus and evidence of its natural intergeneric transfer
    • Ka, J. O., and J. M. Tiedje. 1994. Integration and excision of a 2,4-dichlorophenoxyacetic acid degradative plasmid in Alcaligenes paradoxus and evidence of its natural intergeneric transfer. J. Bacteriol. 176:5284-5289.
    • (1994) J. Bacteriol. , vol.176 , pp. 5284-5289
    • Ka, J.O.1    Tiedje, J.M.2
  • 16
    • 0025269273 scopus 로고
    • Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12
    • Komine, Y., T. Adachi, H. Inokuchi, and H. Ozeki. 1990. Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12. J. Mol. Biol. 212:579-598.
    • (1990) J. Mol. Biol. , vol.212 , pp. 579-598
    • Komine, Y.1    Adachi, T.2    Inokuchi, H.3    Ozeki, H.4
  • 17
    • 0029852994 scopus 로고    scopus 로고
    • The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP 134(pJP4)
    • Leveau, J. H. J., and J. R. van der Meer. 1996. The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP 134(pJP4). J. Bacteriol. 178:6824-6832.
    • (1996) J. Bacteriol. , vol.178 , pp. 6824-6832
    • Leveau, J.H.J.1    Van Der Meer, J.R.2
  • 18
    • 0007754476 scopus 로고
    • Hfr strains of Escherichia coli K-12
    • F. C. Neidhardt, J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechter, and H. E. Umbarger (ed.), American Society for Microbiology, Washington, D.C.
    • Low, K. B. 1987. Hfr strains of Escherichia coli K-12, p. 1134-1137. In F. C. Neidhardt, J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella typhimurium: cellular and molecular biology. American Society for Microbiology, Washington, D.C.
    • (1987) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology , pp. 1134-1137
    • Low, K.B.1
  • 19
    • 0021854455 scopus 로고
    • Method for gene replacement in Pseudomonas aeruginosa used in construction of recA mutants: recA-independent instability of alginate production
    • Ohman, D. E., M. A. West, J. L. Flynn, and J. B. Goldberg. 1985. Method for gene replacement in Pseudomonas aeruginosa used in construction of recA mutants: recA-independent instability of alginate production. J. Bacteriol. 162:1068-1074.
    • (1985) J. Bacteriol. , vol.162 , pp. 1068-1074
    • Ohman, D.E.1    West, M.A.2    Flynn, J.L.3    Goldberg, J.B.4
  • 20
    • 0000576769 scopus 로고
    • Degradation of 1,4-dichlorobenzene by enriched and constructed bacteria
    • Oltmanns, R. H., H. G. Rast, and W. Reineke. 1988. Degradation of 1,4-dichlorobenzene by enriched and constructed bacteria. Appl. Microbiol. Biotechnol. 28:609-616.
    • (1988) Appl. Microbiol. Biotechnol. , vol.28 , pp. 609-616
    • Oltmanns, R.H.1    Rast, H.G.2    Reineke, W.3
  • 21
    • 3543032920 scopus 로고    scopus 로고
    • Unpublished results
    • Ravatn, R. Unpublished results.
    • Ravatn, R.1
  • 22
    • 0031745938 scopus 로고    scopus 로고
    • Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms
    • Ravatn, R., A. J. B. Zehnder, and J. R. van der Meer. 1998. Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms. Appl. Environ. Microbiol. 64:2126-2132.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2126-2132
    • Ravatn, R.1    Zehnder, A.J.B.2    Van Der Meer, J.R.3
  • 24
    • 0024967060 scopus 로고
    • Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements
    • Reiter, W. D., P. Palm, and S. Yeats. 1989. Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements. Nucleic Acids Res. 17:1907-1914.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 1907-1914
    • Reiter, W.D.1    Palm, P.2    Yeats, S.3
  • 25
    • 0028889420 scopus 로고
    • Conjugative transposons: An unusual and diverse set of integrated gene transfer elements
    • Salyers, A. A., N. B. Shoemaker, A. M. Stevens, and L. Y. Li. 1995. Conjugative transposons: an unusual and diverse set of integrated gene transfer elements. Microbiol. Rev. 59:579-590.
    • (1995) Microbiol. Rev. , vol.59 , pp. 579-590
    • Salyers, A.A.1    Shoemaker, N.B.2    Stevens, A.M.3    Li, L.Y.4
  • 28
    • 0024438949 scopus 로고
    • Role of gene duplications in the adaptation of Salmonella typhimurium to growth on limiting carbon sources
    • Sonti, R. V., and J. R. Roth. 1989. Role of gene duplications in the adaptation of Salmonella typhimurium to growth on limiting carbon sources. Genetics 123:19-28.
    • (1989) Genetics , vol.123 , pp. 19-28
    • Sonti, R.V.1    Roth, J.R.2
  • 29
    • 0028210272 scopus 로고
    • Use of molecular techniques to evaluate the survival of a microorganism injected into an aquifer
    • Thiem, S. M., M. L. Krumme, R. L. Smith, and J. M. Tiedje. 1994. Use of molecular techniques to evaluate the survival of a microorganism injected into an aquifer. Appl. Environ. Microbiol. 60:1059-1067.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1059-1067
    • Thiem, S.M.1    Krumme, M.L.2    Smith, R.L.3    Tiedje, J.M.4
  • 30
    • 0023637527 scopus 로고
    • Degradation of low concentrations ot dichlorobenzenes and 1,2,4-trichlorobenzene by Pseudomonas sp. strain P51 in nonsterile soil columns
    • van der Meer, J. R., W. Roelofsen, G. Schraa, and A. J. B. Zehnder. 1987. Degradation of low concentrations ot dichlorobenzenes and 1,2,4-trichlorobenzene by Pseudomonas sp. strain P51 in nonsterile soil columns. FEMS Microbiol. Ecol. 45:333-341.
    • (1987) FEMS Microbiol. Ecol. , vol.45 , pp. 333-341
    • Meer, J.R.1    Roelofsen, W.2    Schraa, G.3    Zehnder, A.J.B.4
  • 31
    • 0025961110 scopus 로고
    • Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51
    • van der Meer, J. R., A. R. van Neerven, E. J. de Vries, W. M. de Vos, and A. J. B. Zehnder. 1991. Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51. J. Bacteriol. 173:6-15.
    • (1991) J. Bacteriol. , vol.173 , pp. 6-15
    • Van Der Meer, J.R.1    Van Neerven, A.R.2    De Vries, E.J.3    De Vos, W.M.4    Zehnder, A.J.B.5
  • 32
    • 0029818159 scopus 로고    scopus 로고
    • Pulsed-field gel-electrophoretic analysis of the amplification and copy-number stability of an integrational plasmid in Bacillus subtilis
    • Vazquez-Cruz, C., J. C. Ochoa-Sanchez, and G. Olmedo-Alvarez. 1996. Pulsed-field gel-electrophoretic analysis of the amplification and copy-number stability of an integrational plasmid in Bacillus subtilis. Appl. Microbiol. Biotechnol. 46:55-60.
    • (1996) Appl. Microbiol. Biotechnol. , vol.46 , pp. 55-60
    • Vazquez-Cruz, C.1    Ochoa-Sanchez, J.C.2    Olmedo-Alvarez, G.3
  • 33
    • 0023156844 scopus 로고
    • Molecular cloning and expression of the 3-chlorobenzoate-degrading genes from Pseudomonas sp. strain B13
    • Weisshaar, M. P., F. C. Franklin, and W. Reineke. 1987. Molecular cloning and expression of the 3-chlorobenzoate-degrading genes from Pseudomonas sp. strain B13. J. Bacteriol. 169:394-402.
    • (1987) J. Bacteriol. , vol.169 , pp. 394-402
    • Weisshaar, M.P.1    Franklin, F.C.2    Reineke, W.3
  • 34
    • 0023149088 scopus 로고
    • A plausible mechanism for large-scale chromosomal DNA amplification in streptomycetes
    • Young, M., and J. Cullum. 1987. A plausible mechanism for large-scale chromosomal DNA amplification in streptomycetes. FEBS Lett. 212:10-14.
    • (1987) FEBS Lett. , vol.212 , pp. 10-14
    • Young, M.1    Cullum, J.2
  • 35
    • 0029391189 scopus 로고
    • Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium
    • Zhou, J. Z., and J. M. Tiedje. 1995. Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium. Mol. Ecol. 4:613-618.
    • (1995) Mol. Ecol. , vol.4 , pp. 613-618
    • Zhou, J.Z.1    Tiedje, J.M.2
  • 36
    • 0024427069 scopus 로고
    • Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli
    • Zylstra, G. J., and D. T. Gibson. 1989. Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli. J. Biol. Chem. 264:14940-14946.
    • (1989) J. Biol. Chem. , vol.264 , pp. 14940-14946
    • Zylstra, G.J.1    Gibson, D.T.2
  • 37
    • 0024025415 scopus 로고
    • Toluene degradation by Pseudomonas putida F1: Genetic organization of the tod operon
    • Zylstra, G. J., W. R. McCombie, D. T. Gibson, and B. A. Finette. 1988. Toluene degradation by Pseudomonas putida F1: genetic organization of the tod operon. Appl. Environ. Microbiol. 54:1498-1503.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 1498-1503
    • Zylstra, G.J.1    McCombie, W.R.2    Gibson, D.T.3    Finette, B.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.