-
1
-
-
23944506044
-
Mobile genetic elements: the agents of open source evolution
-
Frost LS, Leplae R, Summers AO, Toussaint A, (2005) Mobile genetic elements: the agents of open source evolution. Nat Rev Microbiol 3: 722–732. 16138100
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 722-732
-
-
Frost, L.S.1
Leplae, R.2
Summers, A.O.3
Toussaint, A.4
-
2
-
-
80052333445
-
The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation
-
Guglielmini J, Quintais L, Garcillan-Barcia MP, de la Cruz F, Rocha EP, (2011) The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation. PLoS Genet 7: e1002222. doi: 10.1371/journal.pgen.1002222 21876676
-
(2011)
PLoS Genet
, vol.7
, pp. 1002222
-
-
Guglielmini, J.1
Quintais, L.2
Garcillan-Barcia, M.P.3
de la Cruz, F.4
Rocha, E.P.5
-
4
-
-
71449116162
-
Biological diversity of prokaryotic type IV secretion systems
-
Alvarez-Martinez CE, Christie PJ, (2009) Biological diversity of prokaryotic type IV secretion systems. Microbiol Mol Biol Rev 73: 775–808. doi: 10.1128/MMBR.00023-09 19946141
-
(2009)
Microbiol Mol Biol Rev
, vol.73
, pp. 775-808
-
-
Alvarez-Martinez, C.E.1
Christie, P.J.2
-
5
-
-
24644481914
-
Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response
-
Auchtung JM, Lee CA, Monson RE, Lehman AP, Grossman AD, (2005) Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response. Proc Natl Acad Sci U S A 102: 12554–12559. 16105942
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 12554-12559
-
-
Auchtung, J.M.1
Lee, C.A.2
Monson, R.E.3
Lehman, A.P.4
Grossman, A.D.5
-
6
-
-
36549062382
-
Identification and characterization of int (integrase), xis (excisionase) and chromosomal attachment sites of the integrative and conjugative element ICEBs1 of Bacillus subtilis
-
Lee CA, Auchtung JM, Monson RE, Grossman AD, (2007) Identification and characterization of int (integrase), xis (excisionase) and chromosomal attachment sites of the integrative and conjugative element ICEBs1 of Bacillus subtilis. Mol Microbiol 66: 1356–1369. 18005101
-
(2007)
Mol Microbiol
, vol.66
, pp. 1356-1369
-
-
Lee, C.A.1
Auchtung, J.M.2
Monson, R.E.3
Grossman, A.D.4
-
7
-
-
35048903315
-
Identification of the origin of transfer (oriT) and DNA relaxase required for conjugation of the integrative and conjugative element ICEBs1 of Bacillus subtilis
-
Lee CA, Grossman AD, (2007) Identification of the origin of transfer (oriT) and DNA relaxase required for conjugation of the integrative and conjugative element ICEBs1 of Bacillus subtilis. J Bacteriol 189: 7254–7261. 17693500
-
(2007)
J Bacteriol
, vol.189
, pp. 7254-7261
-
-
Lee, C.A.1
Grossman, A.D.2
-
8
-
-
84873514798
-
A conserved helicase processivity factor is needed for conjugation and replication of an integrative and conjugative element
-
Thomas J, Lee CA, Grossman AD, (2013) A conserved helicase processivity factor is needed for conjugation and replication of an integrative and conjugative element. PLoS Genet 9: e103198.
-
(2013)
PLoS Genet
, vol.9
, pp. 103198
-
-
Thomas, J.1
Lee, C.A.2
Grossman, A.D.3
-
9
-
-
73849096537
-
Polar positioning of a conjugation protein from the integrative and conjugative element ICEBs1 of Bacillus subtilis
-
Berkmen MB, Lee CA, Loveday EK, Grossman AD, (2010) Polar positioning of a conjugation protein from the integrative and conjugative element ICEBs1 of Bacillus subtilis. J Bacteriol 192: 38–45. doi: 10.1128/JB.00860-09 19734305
-
(2010)
J Bacteriol
, vol.192
, pp. 38-45
-
-
Berkmen, M.B.1
Lee, C.A.2
Loveday, E.K.3
Grossman, A.D.4
-
10
-
-
84896441314
-
The bifunctional cell wall hydrolase CwlT is needed for conjugation of the integrative and conjugative element ICEBs1 in Bacillus subtilis and B. anthracis
-
DeWitt T, Grossman AD, (2014) The bifunctional cell wall hydrolase CwlT is needed for conjugation of the integrative and conjugative element ICEBs1 in Bacillus subtilis and B. anthracis. J Bacteriol 196: 1588–1596. doi: 10.1128/JB.00012-14 24532767
-
(2014)
J Bacteriol
, vol.196
, pp. 1588-1596
-
-
DeWitt, T.1
Grossman, A.D.2
-
11
-
-
0036425161
-
The ICESt1 element of Streptococcus thermophilus belongs to a large family of integrative and conjugative elements that exchange modules and change their specificity of integration
-
Burrus V, Pavlovic G, Decaris B, Guedon G, (2002) The ICESt1 element of Streptococcus thermophilus belongs to a large family of integrative and conjugative elements that exchange modules and change their specificity of integration. Plasmid 48: 77–97. 12383726
-
(2002)
Plasmid
, vol.48
, pp. 77-97
-
-
Burrus, V.1
Pavlovic, G.2
Decaris, B.3
Guedon, G.4
-
12
-
-
34249997536
-
Identification and characterization of the immunity repressor (ImmR) that controls the mobile genetic element ICEBs1 of Bacillus subtilis
-
Auchtung JM, Lee CA, Garrison KL, Grossman AD, (2007) Identification and characterization of the immunity repressor (ImmR) that controls the mobile genetic element ICEBs1 of Bacillus subtilis. Mol Microbiol 64: 1515–1528. 17511812
-
(2007)
Mol Microbiol
, vol.64
, pp. 1515-1528
-
-
Auchtung, J.M.1
Lee, C.A.2
Garrison, K.L.3
Grossman, A.D.4
-
13
-
-
53849090635
-
A conserved anti-repressor controls horizontal gene transfer by proteolysis
-
Bose B, Auchtung JM, Lee CA, Grossman AD, (2008) A conserved anti-repressor controls horizontal gene transfer by proteolysis. Mol Microbiol 70: 570–582. doi: 10.1111/j.1365-2958.2008.06414.x 18761623
-
(2008)
Mol Microbiol
, vol.70
, pp. 570-582
-
-
Bose, B.1
Auchtung, J.M.2
Lee, C.A.3
Grossman, A.D.4
-
14
-
-
0038308165
-
F factor conjugation is a true type IV secretion system
-
Lawley TD, Klimke WA, Gubbins MJ, Frost LS, (2003) F factor conjugation is a true type IV secretion system. FEMS Microbiol Lett 224: 1–15. 12855161
-
(2003)
FEMS Microbiol Lett
, vol.224
, pp. 1-15
-
-
Lawley, T.D.1
Klimke, W.A.2
Gubbins, M.J.3
Frost, L.S.4
-
15
-
-
0014396973
-
Asymmetric transfer of DNA strands in bacterial conjugation
-
Ohki M, Tomizawa J, (1968) Asymmetric transfer of DNA strands in bacterial conjugation. Cold Spring Harb Symp Quant Biol 33: 651–658. 4892002
-
(1968)
Cold Spring Harb Symp Quant Biol
, vol.33
, pp. 651-658
-
-
Ohki, M.1
Tomizawa, J.2
-
16
-
-
0028202426
-
Association of single-stranded transferred DNA from Agrobacterium tumefaciens with tobacco cells
-
Yusibov VM, Steck TR, Gupta V, Gelvin SB, (1994) Association of single-stranded transferred DNA from Agrobacterium tumefaciens with tobacco cells. Proc Natl Acad Sci U S A 91: 2994–2998. 8159693
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, pp. 2994-2998
-
-
Yusibov, V.M.1
Steck, T.R.2
Gupta, V.3
Gelvin, S.B.4
-
17
-
-
0028068772
-
Agrobacterium tumefaciens transfers single-stranded transferred DNA (T-DNA) into the plant cell nucleus
-
Tinland B, Hohn B, Puchta H, (1994) Agrobacterium tumefaciens transfers single-stranded transferred DNA (T-DNA) into the plant cell nucleus. Proc Natl Acad Sci U S A 91: 8000–8004. 11607492
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, pp. 8000-8004
-
-
Tinland, B.1
Hohn, B.2
Puchta, H.3
-
18
-
-
0021319941
-
Processing of plasmid DNA during bacterial conjugation
-
Willetts N, Wilkins B, (1984) Processing of plasmid DNA during bacterial conjugation. Microbiol Rev 48: 24–41. 6201705
-
(1984)
Microbiol Rev
, vol.48
, pp. 24-41
-
-
Willetts, N.1
Wilkins, B.2
-
19
-
-
28044438533
-
Site-specific recombinase and integrase activities of a conjugative relaxase in recipient cells
-
Draper O, Cesar CE, Machon C, de la Cruz F, Llosa M, (2005) Site-specific recombinase and integrase activities of a conjugative relaxase in recipient cells. Proc Natl Acad Sci U S A 102: 16385–16390. 16260740
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 16385-16390
-
-
Draper, O.1
Cesar, C.E.2
Machon, C.3
de la Cruz, F.4
Llosa, M.5
-
20
-
-
0029007928
-
DNA processing reactions in bacterial conjugation
-
Lanka E, Wilkins BM, (1995) DNA processing reactions in bacterial conjugation. Annu Rev Biochem 64: 141–169. 7574478
-
(1995)
Annu Rev Biochem
, vol.64
, pp. 141-169
-
-
Lanka, E.1
Wilkins, B.M.2
-
21
-
-
84880509250
-
Breaking and joining single-stranded DNA: the HUH endonuclease superfamily
-
Chandler M, de la Cruz F, Dyda F, Hickman AB, Moncalian G, et al. (2013) Breaking and joining single-stranded DNA: the HUH endonuclease superfamily. Nat Rev Microbiol 11: 525–538. doi: 10.1038/nrmicro3067 23832240
-
(2013)
Nat Rev Microbiol
, vol.11
, pp. 525-538
-
-
Chandler, M.1
de la Cruz, F.2
Dyda, F.3
Hickman, A.B.4
Moncalian, G.5
-
22
-
-
66749140560
-
Challenging a paradigm: the role of DNA homology in tyrosine recombinase reactions
-
Rajeev L, Malanowska K, Gardner JF, (2009) Challenging a paradigm: the role of DNA homology in tyrosine recombinase reactions. Microbiol Mol Biol Rev 73: 300–309. doi: 10.1128/MMBR.00038-08 19487729
-
(2009)
Microbiol Mol Biol Rev
, vol.73
, pp. 300-309
-
-
Rajeev, L.1
Malanowska, K.2
Gardner, J.F.3
-
23
-
-
14544275047
-
Plasmid rolling-circle replication: highlights of two decades of research
-
Khan SA, (2005) Plasmid rolling-circle replication: highlights of two decades of research. Plasmid 53: 126–136. 15737400
-
(2005)
Plasmid
, vol.53
, pp. 126-136
-
-
Khan, S.A.1
-
24
-
-
0031440479
-
Rolling-circle replication of bacterial plasmids
-
Khan SA, (1997) Rolling-circle replication of bacterial plasmids. Microbiol Mol Biol Rev 61: 442–455. 9409148
-
(1997)
Microbiol Mol Biol Rev
, vol.61
, pp. 442-455
-
-
Khan, S.A.1
-
25
-
-
0030426021
-
Mechanisms of primer RNA synthesis and D-loop/R-loop-dependent DNA replication in Escherichia coli
-
Masai H, Arai K, (1996) Mechanisms of primer RNA synthesis and D-loop/R-loop-dependent DNA replication in Escherichia coli. Biochimie 78: 1109–1117. 9150892
-
(1996)
Biochimie
, vol.78
, pp. 1109-1117
-
-
Masai, H.1
Arai, K.2
-
26
-
-
0028953436
-
Effects of the generation of single-stranded DNA on the maintenance of plasmid pMV158 and derivatives in different Bacillus subtilis strains
-
Meijer WJ, van der Lelie D, Venema G, Bron S, (1995) Effects of the generation of single-stranded DNA on the maintenance of plasmid pMV158 and derivatives in different Bacillus subtilis strains. Plasmid 33: 79–89. 7597110
-
(1995)
Plasmid
, vol.33
, pp. 79-89
-
-
Meijer, W.J.1
van der Lelie, D.2
Venema, G.3
Bron, S.4
-
27
-
-
0028823264
-
Structural and functional analysis of the single-strand origin of replication from the lactococcal plasmid pWV01
-
Seegers JF, Zhao AC, Meijer WJ, Khan SA, Venema G, et al. (1995) Structural and functional analysis of the single-strand origin of replication from the lactococcal plasmid pWV01. Mol Gen Genet 249: 43–50. 8552032
-
(1995)
Mol Gen Genet
, vol.249
, pp. 43-50
-
-
Seegers, J.F.1
Zhao, A.C.2
Meijer, W.J.3
Khan, S.A.4
Venema, G.5
-
28
-
-
63449111354
-
Lagging-strand DNA replication origins are required for conjugal transfer of the promiscuous plasmid pMV158
-
Lorenzo-Diaz F, Espinosa M, (2009) Lagging-strand DNA replication origins are required for conjugal transfer of the promiscuous plasmid pMV158. J Bacteriol 191: 720–727. doi: 10.1128/JB.01257-08 19028894
-
(2009)
J Bacteriol
, vol.191
, pp. 720-727
-
-
Lorenzo-Diaz, F.1
Espinosa, M.2
-
29
-
-
0023220317
-
Functional analysis of a palindromic sequence required for normal replication of several staphylococcal plasmids
-
Gruss AD, Ross HF, Novick RP, (1987) Functional analysis of a palindromic sequence required for normal replication of several staphylococcal plasmids. Proc Natl Acad Sci U S A 84: 2165–2169. 3104910
-
(1987)
Proc Natl Acad Sci U S A
, vol.84
, pp. 2165-2169
-
-
Gruss, A.D.1
Ross, H.F.2
Novick, R.P.3
-
30
-
-
74349093158
-
Autonomous plasmid-like replication of a conjugative transposon
-
Lee CA, Babic A, Grossman AD, (2010) Autonomous plasmid-like replication of a conjugative transposon. Mol Microbiol 75: 268–279. doi: 10.1111/j.1365-2958.2009.06985.x 19943900
-
(2010)
Mol Microbiol
, vol.75
, pp. 268-279
-
-
Lee, C.A.1
Babic, A.2
Grossman, A.D.3
-
31
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389–3402. 9254694
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
32
-
-
0018975217
-
New cryptic plasmid of Bacillus subtilis and restriction analysis of other plasmids found by general screening
-
Uozumi T, Ozaki A, Beppu T, Arima K, (1980) New cryptic plasmid of Bacillus subtilis and restriction analysis of other plasmids found by general screening. J Bacteriol 142: 315–318. 6246066
-
(1980)
J Bacteriol
, vol.142
, pp. 315-318
-
-
Uozumi, T.1
Ozaki, A.2
Beppu, T.3
Arima, K.4
-
33
-
-
0031905297
-
Rolling-circle plasmids from Bacillus subtilis: complete nucleotide sequences and analyses of genes of pTA1015, pTA1040, pTA1050 and pTA1060, and comparisons with related plasmids from gram-positive bacteria
-
Meijer WJ, Wisman GB, Terpstra P, Thorsted PB, Thomas CM, et al. (1998) Rolling-circle plasmids from Bacillus subtilis: complete nucleotide sequences and analyses of genes of pTA1015, pTA1040, pTA1050 and pTA1060, and comparisons with related plasmids from gram-positive bacteria. FEMS Microbiol Rev 21: 337–368. 9532747
-
(1998)
FEMS Microbiol Rev
, vol.21
, pp. 337-368
-
-
Meijer, W.J.1
Wisman, G.B.2
Terpstra, P.3
Thorsted, P.B.4
Thomas, C.M.5
-
34
-
-
0034623005
-
T-Coffee: A novel method for fast and accurate multiple sequence alignment
-
Notredame C, Higgins DG, Heringa J, (2000) T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol 302: 205–217. 10964570
-
(2000)
J Mol Biol
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
35
-
-
0027401281
-
Analysis of features contributing to activity of the single-stranded origin of Bacillus plasmid pBAA1
-
Seery L, Devine KM, (1993) Analysis of features contributing to activity of the single-stranded origin of Bacillus plasmid pBAA1. J Bacteriol 175: 1988–1994. 8458841
-
(1993)
J Bacteriol
, vol.175
, pp. 1988-1994
-
-
Seery, L.1
Devine, K.M.2
-
36
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 31: 3406–3415. 12824337
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
37
-
-
0023410779
-
The effect of restriction on shotgun cloning and plasmid stability in Bacillus subtilis Marburg
-
Haima P, Bron S, Venema G, (1987) The effect of restriction on shotgun cloning and plasmid stability in Bacillus subtilis Marburg. Mol Gen Genet 209: 335–342. 2823077
-
(1987)
Mol Gen Genet
, vol.209
, pp. 335-342
-
-
Haima, P.1
Bron, S.2
Venema, G.3
-
38
-
-
0029003406
-
Primosome assembly site in Bacillus subtilis
-
Bruand C, Ehrlich SD, Janniere L, (1995) Primosome assembly site in Bacillus subtilis. EMBO J 14: 2642–2650. 7781616
-
(1995)
EMBO J
, vol.14
, pp. 2642-2650
-
-
Bruand, C.1
Ehrlich, S.D.2
Janniere, L.3
-
39
-
-
0026326477
-
Plasmid instability and molecular cloning in Bacillus subtilis
-
Bron S, Meijer W, Holsappel S, Haima P, (1991) Plasmid instability and molecular cloning in Bacillus subtilis. Res Microbiol 142: 875–883. 1664537
-
(1991)
Res Microbiol
, vol.142
, pp. 875-883
-
-
Bron, S.1
Meijer, W.2
Holsappel, S.3
Haima, P.4
-
40
-
-
33748650086
-
Spatial and temporal organization of the Bacillus subtilis replication cycle
-
Berkmen MB, Grossman AD, (2006) Spatial and temporal organization of the Bacillus subtilis replication cycle. Mol Microbiol 62: 57–71. 16942601
-
(2006)
Mol Microbiol
, vol.62
, pp. 57-71
-
-
Berkmen, M.B.1
Grossman, A.D.2
-
41
-
-
70350159900
-
SirA enforces diploidy by inhibiting the replication initiator DnaA during spore formation in Bacillus subtilis
-
Wagner JK, Marquis KA, Rudner DZ, (2009) SirA enforces diploidy by inhibiting the replication initiator DnaA during spore formation in Bacillus subtilis. Mol Microbiol 73: 963–974. doi: 10.1111/j.1365-2958.2009.06825.x 19682252
-
(2009)
Mol Microbiol
, vol.73
, pp. 963-974
-
-
Wagner, J.K.1
Marquis, K.A.2
Rudner, D.Z.3
-
42
-
-
65649127805
-
Chromatin immunoprecipitation (ChIP) for analysis of histone modifications and chromatin-associated proteins
-
Milne TA, Zhao K, Hess JL, (2009) Chromatin immunoprecipitation (ChIP) for analysis of histone modifications and chromatin-associated proteins. Methods Mol Biol 538: 409–423. doi: 10.1007/978-1-59745-418-6_21 19277579
-
(2009)
Methods Mol Biol
, vol.538
, pp. 409-423
-
-
Milne, T.A.1
Zhao, K.2
Hess, J.L.3
-
43
-
-
84880790228
-
Selective pressures to maintain attachment site specificity of integrative and conjugative elements
-
Menard KL, Grossman AD, (2013) Selective pressures to maintain attachment site specificity of integrative and conjugative elements. PLoS Genet 9: e1003623. doi: 10.1371/journal.pgen.1003623 23874222
-
(2013)
PLoS Genet
, vol.9
, pp. 1003623
-
-
Menard, K.L.1
Grossman, A.D.2
-
44
-
-
23744489154
-
The single-stranded genome of phage CTX is the form used for integration into the genome of Vibrio cholerae
-
Val M-E, Bouvier M, Campos J, Sherratt D, Cornet Fß, et al. (2005) The single-stranded genome of phage CTX is the form used for integration into the genome of Vibrio cholerae. Molecular Cell 19: 559–566. 16109379
-
(2005)
Molecular Cell
, vol.19
, pp. 559-566
-
-
Val, M.-E.1
Bouvier, M.2
Campos, J.3
Sherratt, D.4
Cornet, F.ß5
-
45
-
-
29244454620
-
Integron cassette insertion: a recombination process involving a folded single strand substrate
-
Bouvier M, Demarre G, Mazel D, (2005) Integron cassette insertion: a recombination process involving a folded single strand substrate. EMBO J 24: 4356–4367. 16341091
-
(2005)
EMBO J
, vol.24
, pp. 4356-4367
-
-
Bouvier, M.1
Demarre, G.2
Mazel, D.3
-
46
-
-
0020266466
-
Nucleotide sequence and functional map of pC194, a plasmid that specifies inducible chloramphenicol resistance
-
Horinouchi S, Weisblum B, (1982) Nucleotide sequence and functional map of pC194, a plasmid that specifies inducible chloramphenicol resistance. J Bacteriol 150: 815–825. 6950931
-
(1982)
J Bacteriol
, vol.150
, pp. 815-825
-
-
Horinouchi, S.1
Weisblum, B.2
-
47
-
-
0021018278
-
Complete nucleotide sequence of pT181, a tetracycline-resistance plasmid from Staphylococcus aureus
-
Khan SA, Novick RP, (1983) Complete nucleotide sequence of pT181, a tetracycline-resistance plasmid from Staphylococcus aureus. Plasmid 10: 251–259. 6657777
-
(1983)
Plasmid
, vol.10
, pp. 251-259
-
-
Khan, S.A.1
Novick, R.P.2
-
48
-
-
0022599340
-
The nucleotide sequence of pUB110: some salient features in relation to replication and its regulation
-
McKenzie T, Hoshino T, Tanaka T, Sueoka N, (1986) The nucleotide sequence of pUB110: some salient features in relation to replication and its regulation. Plasmid 15: 93–103. 3010356
-
(1986)
Plasmid
, vol.15
, pp. 93-103
-
-
McKenzie, T.1
Hoshino, T.2
Tanaka, T.3
Sueoka, N.4
-
49
-
-
84937774473
-
Replication and Active Partition of Integrative and Conjugative Elements (ICEs) of the SXT/R391 Family: The Line between ICEs and Conjugative Plasmids Is Getting Thinner
-
Carraro N, Poulin D, Burrus V, (2015) Replication and Active Partition of Integrative and Conjugative Elements (ICEs) of the SXT/R391 Family: The Line between ICEs and Conjugative Plasmids Is Getting Thinner. PLoS Genet 11: e1005298. doi: 10.1371/journal.pgen.1005298 26061412
-
(2015)
PLoS Genet
, vol.11
, pp. 1005298
-
-
Carraro, N.1
Poulin, D.2
Burrus, V.3
-
50
-
-
84864008614
-
The Bacillus subtilis conjugative transposon ICEBs1 mobilizes plasmids lacking dedicated mobilization functions
-
Lee CA, Thomas J, Grossman AD, (2012) The Bacillus subtilis conjugative transposon ICEBs1 mobilizes plasmids lacking dedicated mobilization functions. J Bacteriol 194: 3165–3172. doi: 10.1128/JB.00301-12 22505685
-
(2012)
J Bacteriol
, vol.194
, pp. 3165-3172
-
-
Lee, C.A.1
Thomas, J.2
Grossman, A.D.3
-
51
-
-
0030831561
-
Frpo: a novel single-stranded DNA promoter for transcription and for primer RNA synthesis of DNA replication
-
Masai H, Arai K, (1997) Frpo: a novel single-stranded DNA promoter for transcription and for primer RNA synthesis of DNA replication. Cell 89: 897–907. 9200608
-
(1997)
Cell
, vol.89
, pp. 897-907
-
-
Masai, H.1
Arai, K.2
-
52
-
-
0026513217
-
Replication of single-stranded plasmid pT181 DNA in vitro
-
Birch P, Khan SA, (1992) Replication of single-stranded plasmid pT181 DNA in vitro. Proc Natl Acad Sci U S A 89: 290–294. 1729700
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 290-294
-
-
Birch, P.1
Khan, S.A.2
-
53
-
-
0032768008
-
Characterization of a single-strand origin, ssoU, required for broad host range replication of rolling-circle plasmids
-
Kramer MG, Espinosa M, Misra TK, Khan SA, (1999) Characterization of a single-strand origin, ssoU, required for broad host range replication of rolling-circle plasmids. Mol Microbiol 33: 466–475. 10417638
-
(1999)
Mol Microbiol
, vol.33
, pp. 466-475
-
-
Kramer, M.G.1
Espinosa, M.2
Misra, T.K.3
Khan, S.A.4
-
54
-
-
0032168063
-
Lagging strand replication of rolling-circle plasmids: specific recognition of the ssoA-type origins in different gram-positive bacteria
-
Kramer MG, Espinosa M, Misra TK, Khan SA, (1998) Lagging strand replication of rolling-circle plasmids: specific recognition of the ssoA-type origins in different gram-positive bacteria. Proc Natl Acad Sci U S A 95: 10505–10510. 9724733
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 10505-10510
-
-
Kramer, M.G.1
Espinosa, M.2
Misra, T.K.3
Khan, S.A.4
-
55
-
-
0030766851
-
Plasmid rolling circle replication: identification of the RNA polymerase-directed primer RNA and requirement for DNA polymerase I for lagging strand synthesis
-
Kramer MG, Khan SA, Espinosa M, (1997) Plasmid rolling circle replication: identification of the RNA polymerase-directed primer RNA and requirement for DNA polymerase I for lagging strand synthesis. EMBO J 16: 5784–5795. 9312036
-
(1997)
EMBO J
, vol.16
, pp. 5784-5795
-
-
Kramer, M.G.1
Khan, S.A.2
Espinosa, M.3
-
56
-
-
0019917528
-
Identification of ColE1 DNA sequences that direct single strand-to-double strand conversion by a phi X174 type mechanism
-
Nomura N, Low RL, Ray DS, (1982) Identification of ColE1 DNA sequences that direct single strand-to-double strand conversion by a phi X174 type mechanism. Proc Natl Acad Sci U S A 79: 3153–3157. 6212928
-
(1982)
Proc Natl Acad Sci U S A
, vol.79
, pp. 3153-3157
-
-
Nomura, N.1
Low, R.L.2
Ray, D.S.3
-
57
-
-
0024397727
-
Mutagenesis of the Tra1 core region of RK2 by using Tn5: identification of plasmid-specific transfer genes
-
Guiney DG, Deiss C, Simnad V, Yee L, Pansegrau W, et al. (1989) Mutagenesis of the Tra1 core region of RK2 by using Tn5: identification of plasmid-specific transfer genes. J Bacteriol 171: 4100–4103. 2544570
-
(1989)
J Bacteriol
, vol.171
, pp. 4100-4103
-
-
Guiney, D.G.1
Deiss, C.2
Simnad, V.3
Yee, L.4
Pansegrau, W.5
-
58
-
-
0021980645
-
Plasmid DNA primases and their role in bacterial conjugation
-
Wilkins BM, Chatfield LK, Wymbs CC, Merryweather A, (1985) Plasmid DNA primases and their role in bacterial conjugation. Basic Life Sci 30: 585–603. 3893412
-
(1985)
Basic Life Sci
, vol.30
, pp. 585-603
-
-
Wilkins, B.M.1
Chatfield, L.K.2
Wymbs, C.C.3
Merryweather, A.4
-
59
-
-
0029837130
-
The primase of broad-host-range plasmid R1162 is active in conjugal transfer
-
Henderson D, Meyer RJ, (1996) The primase of broad-host-range plasmid R1162 is active in conjugal transfer. J Bacteriol 178: 6888–6894. 8955311
-
(1996)
J Bacteriol
, vol.178
, pp. 6888-6894
-
-
Henderson, D.1
Meyer, R.J.2
-
60
-
-
0019845611
-
Plasmid RP4 specifies a deoxyribonucleic acid primase involved in its conjugal transfer and maintenance
-
Lanka E, Barth PT, (1981) Plasmid RP4 specifies a deoxyribonucleic acid primase involved in its conjugal transfer and maintenance. J Bacteriol 148: 769–781. 6273381
-
(1981)
J Bacteriol
, vol.148
, pp. 769-781
-
-
Lanka, E.1
Barth, P.T.2
-
61
-
-
0020456574
-
DNA primase of plasmid ColIb is involved in conjugal DNA synthesis in donor and recipient bacteria
-
Chatfield LK, Orr E, Boulnois GJ, Wilkins BM, (1982) DNA primase of plasmid ColIb is involved in conjugal DNA synthesis in donor and recipient bacteria. J Bacteriol 152: 1188–1195. 6754700
-
(1982)
J Bacteriol
, vol.152
, pp. 1188-1195
-
-
Chatfield, L.K.1
Orr, E.2
Boulnois, G.J.3
Wilkins, B.M.4
-
62
-
-
0024357142
-
RepB' is required in trans for the two single-strand DNA initiation signals in oriV of plasmid RSF1010
-
Honda Y, Sakai H, Komano T, Bagdasarian M, (1989) RepB' is required in trans for the two single-strand DNA initiation signals in oriV of plasmid RSF1010. Gene 80: 155–159. 2792769
-
(1989)
Gene
, vol.80
, pp. 155-159
-
-
Honda, Y.1
Sakai, H.2
Komano, T.3
Bagdasarian, M.4
-
63
-
-
0023665898
-
DNA synthesis is initiated at two positions within the origin of replication of plasmid R1162
-
Lin LS, Meyer RJ, (1987) DNA synthesis is initiated at two positions within the origin of replication of plasmid R1162. Nucleic Acids Res 15: 8319–8331. 3313280
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 8319-8331
-
-
Lin, L.S.1
Meyer, R.J.2
-
64
-
-
0019515201
-
A plasmid DNA primase active in discontinuous bacterial DNA replication
-
Wilkins BM, Boulnois GJ, Lanka E, (1981) A plasmid DNA primase active in discontinuous bacterial DNA replication. Nature 290: 217–221. 7010183
-
(1981)
Nature
, vol.290
, pp. 217-221
-
-
Wilkins, B.M.1
Boulnois, G.J.2
Lanka, E.3
-
66
-
-
84946568497
-
Mobilizable Rolling-Circle Replicating Plasmids from Gram-Positive Bacteria: A Low-Cost Conjugative Transfer
-
Fernández-López C, Bravo A, Ruiz-Cruz S, Solano-Collado V, Garsin DA, et al. (2014) Mobilizable Rolling-Circle Replicating Plasmids from Gram-Positive Bacteria: A Low-Cost Conjugative Transfer. Microbiol Spectrum 2: 8.
-
(2014)
Microbiol Spectrum
, vol.2
, pp. 8
-
-
Fernández-López, C.1
Bravo, A.2
Ruiz-Cruz, S.3
Solano-Collado, V.4
Garsin, D.A.5
-
67
-
-
0024118243
-
Structure of the gene for the transition state regulator, abrB: regulator synthesis is controlled by the spo0A sporulation gene in Bacillus subtilis
-
Perego M, Spiegelman GB, Hoch JA, (1988) Structure of the gene for the transition state regulator, abrB: regulator synthesis is controlled by the spo0A sporulation gene in Bacillus subtilis. Mol Microbiol 2: 689–699. 3145384
-
(1988)
Mol Microbiol
, vol.2
, pp. 689-699
-
-
Perego, M.1
Spiegelman, G.B.2
Hoch, J.A.3
-
68
-
-
85003582674
-
Complete genome sequences of Bacillus subtilis subsp. subtilis laboratory strains JH642 (AG174) and AG1839
-
Smith JL, Goldberg JM, Grossman AD, (2014) Complete genome sequences of Bacillus subtilis subsp. subtilis laboratory strains JH642 (AG174) and AG1839. Genome Announc 2.
-
(2014)
Genome Announc
, vol.2
-
-
Smith, J.L.1
Goldberg, J.M.2
Grossman, A.D.3
-
69
-
-
0035163555
-
Development and characterization of a xylose-dependent system for expression of cloned genes in Bacillus subtilis: conditional complementation of a teichoic acid mutant
-
Bhavsar AP, Zhao X, Brown ED, (2001) Development and characterization of a xylose-dependent system for expression of cloned genes in Bacillus subtilis: conditional complementation of a teichoic acid mutant. Appl Environ Microbiol 67: 403–410. 11133472
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 403-410
-
-
Bhavsar, A.P.1
Zhao, X.2
Brown, E.D.3
-
70
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA, 3rdet al. (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 6: 343–345. doi: 10.1038/nmeth.1318 19363495
-
(2009)
Nat Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.Y.3
Venter, J.C.4
Hutchison, C.A.5
-
71
-
-
0024556150
-
Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension
-
Horton RM, Hunt HD, Ho SN, Pullen JK, Pease LR, (1989) Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. Gene 77: 61–68. 2744488
-
(1989)
Gene
, vol.77
, pp. 61-68
-
-
Horton, R.M.1
Hunt, H.D.2
Ho, S.N.3
Pullen, J.K.4
Pease, L.R.5
-
72
-
-
0024720167
-
Identification and characterization of genes controlled by the sporulation-regulatory gene spo0H in Bacillus subtilis
-
Jaacks KJ, Healy J, Losick R, Grossman AD, (1989) Identification and characterization of genes controlled by the sporulation-regulatory gene spo0H in Bacillus subtilis. J Bacteriol 171: 4121–4129. 2502532
-
(1989)
J Bacteriol
, vol.171
, pp. 4121-4129
-
-
Jaacks, K.J.1
Healy, J.2
Losick, R.3
Grossman, A.D.4
-
74
-
-
0032553470
-
Localization of bacterial DNA polymerase: evidence for a factory model of replication
-
Lemon KP, Grossman AD, (1998) Localization of bacterial DNA polymerase: evidence for a factory model of replication. Science 282: 1516–1519. 9822387
-
(1998)
Science
, vol.282
, pp. 1516-1519
-
-
Lemon, K.P.1
Grossman, A.D.2
-
75
-
-
0034509678
-
Movement of replicating DNA through a stationary replisome
-
Lemon KP, Grossman AD, (2000) Movement of replicating DNA through a stationary replisome. Mol Cell 6: 1321–1330. 11163206
-
(2000)
Mol Cell
, vol.6
, pp. 1321-1330
-
-
Lemon, K.P.1
Grossman, A.D.2
-
77
-
-
79952126098
-
Co-directional replication-transcription conflicts lead to replication restart
-
Merrikh H, Machón C, Grainger WH, Grossman AD, Soultanas P, (2011) Co-directional replication-transcription conflicts lead to replication restart. Nature 470: 554–557. doi: 10.1038/nature09758 21350489
-
(2011)
Nature
, vol.470
, pp. 554-557
-
-
Merrikh, H.1
Machón, C.2
Grainger, W.H.3
Grossman, A.D.4
Soultanas, P.5
-
78
-
-
74349131115
-
Ordered association of helicase loader proteins with the Bacillus subtilis origin of replication in vivo
-
Smits WK, Goranov AI, Grossman AD, (2010) Ordered association of helicase loader proteins with the Bacillus subtilis origin of replication in vivo. Mol Microbiol 75: 452–461. doi: 10.1111/j.1365-2958.2009.06999.x 19968790
-
(2010)
Mol Microbiol
, vol.75
, pp. 452-461
-
-
Smits, W.K.1
Goranov, A.I.2
Grossman, A.D.3
-
79
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
-
Livak KJ, Schmittgen TD, (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: 402–408. 11846609
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
80
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403–410. 2231712
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
81
-
-
84862100340
-
ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria
-
Bi D, Xu Z, Harrison EM, Tai C, Wei Y, et al. (2012) ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res 40: D621–626. doi: 10.1093/nar/gkr846 22009673
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 621-626
-
-
Bi, D.1
Xu, Z.2
Harrison, E.M.3
Tai, C.4
Wei, Y.5
-
82
-
-
0024474533
-
Replication origins of single-stranded-DNA plasmid pUB110
-
Boe L, Gros MF, te Riele H, Ehrlich SD, Gruss A, (1989) Replication origins of single-stranded-DNA plasmid pUB110. J Bacteriol 171: 3366–3372. 2722752
-
(1989)
J Bacteriol
, vol.171
, pp. 3366-3372
-
-
Boe, L.1
Gros, M.F.2
te Riele, H.3
Ehrlich, S.D.4
Gruss, A.5
|