-
1
-
-
84870200615
-
Evolutionary implications of horizontal gene transfer
-
Syvanen M. Evolutionary implications of horizontal gene transfer. Annu. Rev. Genet. 2012, 46:341-358.
-
(2012)
Annu. Rev. Genet.
, vol.46
, pp. 341-358
-
-
Syvanen, M.1
-
2
-
-
47649104484
-
Horizontal gene transfer in eukaryotic evolution
-
Keeling P.J., Palmer J.D. Horizontal gene transfer in eukaryotic evolution. Nat. Rev. Genet. 2008, 9:605-618.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 605-618
-
-
Keeling, P.J.1
Palmer, J.D.2
-
3
-
-
84874673466
-
Gene transfer from bacteria and Archaea facilitated evolution of an extremophilic eukaryote
-
Schonknecht G., et al. Gene transfer from bacteria and Archaea facilitated evolution of an extremophilic eukaryote. Science 2013, 339:1207-1210.
-
(2013)
Science
, vol.339
, pp. 1207-1210
-
-
Schonknecht, G.1
-
4
-
-
77951831492
-
Lateral transfer of genes from fungi underlies carotenoid production in aphids
-
Moran N.A., Jarvik T. Lateral transfer of genes from fungi underlies carotenoid production in aphids. Science 2010, 328:624-627.
-
(2010)
Science
, vol.328
, pp. 624-627
-
-
Moran, N.A.1
Jarvik, T.2
-
5
-
-
77953003221
-
Horizontal gene transfer by the parasitic plant Striga hermonthica
-
Yoshida S., et al. Horizontal gene transfer by the parasitic plant Striga hermonthica. Science 2010, 328:1128.
-
(2010)
Science
, vol.328
, pp. 1128
-
-
Yoshida, S.1
-
6
-
-
79851505378
-
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes
-
Treangen T.J., Rocha E.P.C. Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes. PLoS Genet. 2011, 7:e1001284.
-
(2011)
PLoS Genet.
, vol.7
-
-
Treangen, T.J.1
Rocha, E.P.C.2
-
7
-
-
77955658052
-
Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution
-
Schaack S., et al. Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution. Trends Ecol. Evol. 2010, 25:537-546.
-
(2010)
Trends Ecol. Evol.
, vol.25
, pp. 537-546
-
-
Schaack, S.1
-
8
-
-
84864112797
-
High expression hampers horizontal gene transfer
-
Park C., Zhang J. High expression hampers horizontal gene transfer. Genome Biol. Evol. 2012, 4:523-532.
-
(2012)
Genome Biol. Evol.
, vol.4
, pp. 523-532
-
-
Park, C.1
Zhang, J.2
-
9
-
-
79957958115
-
Diminishing returns epistasis among beneficial mutations decelerates adaptation
-
Chou H.H., et al. Diminishing returns epistasis among beneficial mutations decelerates adaptation. Science 2011, 332:1190-1192.
-
(2011)
Science
, vol.332
, pp. 1190-1192
-
-
Chou, H.H.1
-
10
-
-
0032696759
-
Addiction modules and programmed cell death and antideath in bacterial cultures
-
Engelberg-Kulka H., Glaser G. Addiction modules and programmed cell death and antideath in bacterial cultures. Annu. Rev. Microbiol. 1999, 53:43-70.
-
(1999)
Annu. Rev. Microbiol.
, vol.53
, pp. 43-70
-
-
Engelberg-Kulka, H.1
Glaser, G.2
-
12
-
-
84856575274
-
Rational engineering of Escherichia coli strains for plasmid biopharmaceutical manufacturing
-
Gonçalves G.A., et al. Rational engineering of Escherichia coli strains for plasmid biopharmaceutical manufacturing. Biotechnol. J. 2011, 7:251-261.
-
(2011)
Biotechnol. J.
, vol.7
, pp. 251-261
-
-
Gonçalves, G.A.1
-
13
-
-
84866007726
-
The metabolic burden of cellulase expression by recombinant Saccharomyces cerevisiae Y294 in aerobic batch culture
-
Rensburg E., et al. The metabolic burden of cellulase expression by recombinant Saccharomyces cerevisiae Y294 in aerobic batch culture. Appl. Microbiol. Biotechnol. 2012, 96:197-209.
-
(2012)
Appl. Microbiol. Biotechnol.
, vol.96
, pp. 197-209
-
-
Rensburg, E.1
-
14
-
-
33847234930
-
Frequent conjugative transfer accelerates adaptation of a broad-host-range plasmid to an unfavorable Pseudomonas putida host
-
Heuer H., et al. Frequent conjugative transfer accelerates adaptation of a broad-host-range plasmid to an unfavorable Pseudomonas putida host. FEMS Microbiol. Ecol. 2007, 59:738-748.
-
(2007)
FEMS Microbiol. Ecol.
, vol.59
, pp. 738-748
-
-
Heuer, H.1
-
15
-
-
79960095001
-
Selection pressure required for long-term persistence of blaCMY-2-positive IncA/C plasmids
-
Subbiah M., et al. Selection pressure required for long-term persistence of blaCMY-2-positive IncA/C plasmids. Appl. Environ. Microbiol. 2011, 77:4486-4493.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 4486-4493
-
-
Subbiah, M.1
-
16
-
-
84861666352
-
Plasmid-mediated horizontal gene transfer is a coevolutionary process
-
Harrison E., Brockhurst M.A. Plasmid-mediated horizontal gene transfer is a coevolutionary process. Trends Microbiol. 2012, 20:262-267.
-
(2012)
Trends Microbiol.
, vol.20
, pp. 262-267
-
-
Harrison, E.1
Brockhurst, M.A.2
-
17
-
-
44349111947
-
Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1
-
Gaillard M., et al. Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:7058-7063.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 7058-7063
-
-
Gaillard, M.1
-
18
-
-
0031840072
-
Plasmid maintenance renders bacteria more susceptible to heat stress
-
Sato T., Kuramitsu H. Plasmid maintenance renders bacteria more susceptible to heat stress. Microbiol. Immunol. 1998, 42:467-469.
-
(1998)
Microbiol. Immunol.
, vol.42
, pp. 467-469
-
-
Sato, T.1
Kuramitsu, H.2
-
19
-
-
84868275346
-
Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast
-
Tagwerker C., et al. Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast. Nucleic Acids Res. 2012, 40:10375-10383.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 10375-10383
-
-
Tagwerker, C.1
-
20
-
-
27644564234
-
Combining two genomes in one cell: stable cloning of the Synechocystis PCC6803 genome in the Bacillus subtilis 168 genome
-
Itaya M., et al. Combining two genomes in one cell: stable cloning of the Synechocystis PCC6803 genome in the Bacillus subtilis 168 genome. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:15971-15976.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 15971-15976
-
-
Itaya, M.1
-
21
-
-
36249021315
-
Genome-wide experimental determination of barriers to horizontal gene transfer
-
Sorek R., et al. Genome-wide experimental determination of barriers to horizontal gene transfer. Science 2007, 318:1449-1452.
-
(2007)
Science
, vol.318
, pp. 1449-1452
-
-
Sorek, R.1
-
22
-
-
79961144263
-
Universally distributed single-copy genes indicate a constant rate of horizontal transfer
-
Creevey C.J., et al. Universally distributed single-copy genes indicate a constant rate of horizontal transfer. PLoS ONE 2011, 6:e22099.
-
(2011)
PLoS ONE
, vol.6
-
-
Creevey, C.J.1
-
23
-
-
79952840493
-
The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer
-
Cohen O., et al. The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer. Mol. Biol. Evol. 2011, 28:1481-1489.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 1481-1489
-
-
Cohen, O.1
-
24
-
-
28444475529
-
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
-
Pál C., et al. Adaptive evolution of bacterial metabolic networks by horizontal gene transfer. Nat. Genet. 2005, 37:1372-1375.
-
(2005)
Nat. Genet.
, vol.37
, pp. 1372-1375
-
-
Pál, C.1
-
25
-
-
84860644929
-
Insertion site preference of Mu, Tn5, and Tn7 transposons
-
Green B., et al. Insertion site preference of Mu, Tn5, and Tn7 transposons. Mob. DNA 2012, 3:3.
-
(2012)
Mob. DNA
, vol.3
, pp. 3
-
-
Green, B.1
-
26
-
-
84865240356
-
Prophage excision activates Listeria competence genes that promote phagosomal escape and virulence
-
Rabinovich L., et al. Prophage excision activates Listeria competence genes that promote phagosomal escape and virulence. Cell 2012, 150:792-802.
-
(2012)
Cell
, vol.150
, pp. 792-802
-
-
Rabinovich, L.1
-
27
-
-
0348047326
-
Transposon based strategies for microbial functional genomics and proteomics
-
Hayes F. Transposon based strategies for microbial functional genomics and proteomics. Annu. Rev. Genet. 2003, 37:3-29.
-
(2003)
Annu. Rev. Genet.
, vol.37
, pp. 3-29
-
-
Hayes, F.1
-
28
-
-
48249144818
-
Dynamics of genome rearrangement in bacterial populations
-
Darling A.E., et al. Dynamics of genome rearrangement in bacterial populations. PLoS Genet. 2008, 4:e1000128.
-
(2008)
PLoS Genet.
, vol.4
-
-
Darling, A.E.1
-
29
-
-
78149419391
-
Chromosomal rearrangements formed by rrn recombination do not improve replichore balance in host-specific Salmonella enterica serovars
-
Matthews T.D., et al. Chromosomal rearrangements formed by rrn recombination do not improve replichore balance in host-specific Salmonella enterica serovars. PLoS ONE 2010, 5:e13503.
-
(2010)
PLoS ONE
, vol.5
-
-
Matthews, T.D.1
-
30
-
-
79551674254
-
Misfolded proteins impose a dosage-dependent fitness cost and trigger a cytosolic unfolded protein response in yeast
-
Geiler-Samerotte K.A., et al. Misfolded proteins impose a dosage-dependent fitness cost and trigger a cytosolic unfolded protein response in yeast. Proc. Natl. Acad. Sci. U.S.A. 2011, 108:680-685.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 680-685
-
-
Geiler-Samerotte, K.A.1
-
31
-
-
77952682098
-
Quality control of inclusion bodies in Escherichia coli
-
Jürgen B., et al. Quality control of inclusion bodies in Escherichia coli. Microb. Cell Fact. 2010, 9:41.
-
(2010)
Microb. Cell Fact.
, vol.9
, pp. 41
-
-
Jürgen, B.1
-
32
-
-
55849108484
-
Structural features and the persistence of acquired proteins
-
Narra H.P., et al. Structural features and the persistence of acquired proteins. Proteomics 2008, 8:4772-4781.
-
(2008)
Proteomics
, vol.8
, pp. 4772-4781
-
-
Narra, H.P.1
-
33
-
-
70349333227
-
The evolutionary consequences of erroneous protein synthesis
-
Drummond D.A., Wilke C.O. The evolutionary consequences of erroneous protein synthesis. Nat. Rev. Genet. 2009, 10:715-724.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 715-724
-
-
Drummond, D.A.1
Wilke, C.O.2
-
34
-
-
55449126342
-
Mistranslation of membrane proteins and two-component system activation trigger antibiotic-mediated cell death
-
Kohanski M.A., et al. Mistranslation of membrane proteins and two-component system activation trigger antibiotic-mediated cell death. Cell 2008, 135:679-690.
-
(2008)
Cell
, vol.135
, pp. 679-690
-
-
Kohanski, M.A.1
-
35
-
-
58149354386
-
Protein material costs: single atoms can make an evolutionary difference
-
Bragg J.G., Wagner A. Protein material costs: single atoms can make an evolutionary difference. Trends Genet. 2009, 25:5-8.
-
(2009)
Trends Genet.
, vol.25
, pp. 5-8
-
-
Bragg, J.G.1
Wagner, A.2
-
36
-
-
77953115788
-
Cost of unneeded proteins in E. coli is reduced after several generations in exponential growth
-
Shachrai I., et al. Cost of unneeded proteins in E. coli is reduced after several generations in exponential growth. Mol. Cell 2010, 38:758-767.
-
(2010)
Mol. Cell
, vol.38
, pp. 758-767
-
-
Shachrai, I.1
-
37
-
-
49749111449
-
Neutrality of foreign complex subunits in an experimental model of lateral gene transfer
-
Wellner A., Gophna U. Neutrality of foreign complex subunits in an experimental model of lateral gene transfer. Mol. Biol. Evol. 2008, 25:1835-1840.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1835-1840
-
-
Wellner, A.1
Gophna, U.2
-
38
-
-
27544449355
-
Horizontal gene transfer depends on gene content of the host
-
Pal C., et al. Horizontal gene transfer depends on gene content of the host. Bioinformatics 2005, 21:ii222-ii223.
-
(2005)
Bioinformatics
, vol.21
-
-
Pal, C.1
-
39
-
-
67649635978
-
Intrinsic protein disorder and interaction promiscuity are widely associated with dosage sensitivity
-
Vavouri T., et al. Intrinsic protein disorder and interaction promiscuity are widely associated with dosage sensitivity. Cell 2009, 138:198-208.
-
(2009)
Cell
, vol.138
, pp. 198-208
-
-
Vavouri, T.1
-
40
-
-
84859473329
-
Protein misinteraction avoidance causes highly expressed proteins to evolve slowly
-
Yang J.R., et al. Protein misinteraction avoidance causes highly expressed proteins to evolve slowly. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:E831-E840.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
-
-
Yang, J.R.1
-
41
-
-
77953212314
-
The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution
-
Gout J.F., et al. The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution. PLoS Genet. 2010, 6:e1000944.
-
(2010)
PLoS Genet.
, vol.6
-
-
Gout, J.F.1
-
42
-
-
17444364828
-
Amino acid content of recombinant proteins influences the metabolic burden response
-
Bonomo J., Gill R.T. Amino acid content of recombinant proteins influences the metabolic burden response. Biotechnol. Bioeng. 2005, 90:116-126.
-
(2005)
Biotechnol. Bioeng.
, vol.90
, pp. 116-126
-
-
Bonomo, J.1
Gill, R.T.2
-
43
-
-
22744452053
-
Population fitness and the regulation of Escherichia coli genes by bacterial viruses
-
Chen Y., et al. Population fitness and the regulation of Escherichia coli genes by bacterial viruses. PLoS Biol. 2005, 3:e229.
-
(2005)
PLoS Biol.
, vol.3
-
-
Chen, Y.1
-
44
-
-
77956529967
-
Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1
-
Shintani M., et al. Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1. Environ. Microbiol. 2009, 12:1413-1426.
-
(2009)
Environ. Microbiol.
, vol.12
, pp. 1413-1426
-
-
Shintani, M.1
-
45
-
-
80055065227
-
New roles for bacterial siderophores in metal transport and tolerance
-
Schalk I.J., et al. New roles for bacterial siderophores in metal transport and tolerance. Environ. Microbiol. 2011, 13:2844-2854.
-
(2011)
Environ. Microbiol.
, vol.13
, pp. 2844-2854
-
-
Schalk, I.J.1
-
46
-
-
79956022978
-
Towards more robust methods of alien gene detection
-
Azad R.K., Lawrence J.G. Towards more robust methods of alien gene detection. Nucleic Acids Res. 2011, 39:e56.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Azad, R.K.1
Lawrence, J.G.2
-
47
-
-
0037133671
-
Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis
-
Akashi H., Gojobori T. Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proc. Natl. Acad. Sci. U.S.A. 2002, 99:3695-3700.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 3695-3700
-
-
Akashi, H.1
Gojobori, T.2
-
48
-
-
67651227404
-
Differential regulation of horizontally acquired and core genome genes by the bacterial modulator H-NS
-
Baños R.C., et al. Differential regulation of horizontally acquired and core genome genes by the bacterial modulator H-NS. Proc. Natl. Acad. Sci. U.S.A. 2009, 5:e1000513.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.5
-
-
Baños, R.C.1
-
49
-
-
84865973296
-
A selective force favoring increased G+C content in bacterial genes
-
Raghavan R., et al. A selective force favoring increased G+C content in bacterial genes. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:14504-14507.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 14504-14507
-
-
Raghavan, R.1
-
50
-
-
79954456859
-
Determinants of translation efficiency and accuracy
-
Gingold H., Pilpel Y. Determinants of translation efficiency and accuracy. Mol. Syst. Biol. 2011, 7:1-13.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 1-13
-
-
Gingold, H.1
Pilpel, Y.2
-
51
-
-
84873601673
-
Good codons, bad transcript: large reductions in gene expression and fitness arising from synonymous mutations in a key enzyme
-
Agashe D., et al. Good codons, bad transcript: large reductions in gene expression and fitness arising from synonymous mutations in a key enzyme. Mol. Biol. Evol. 2013, 30:549-560.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 549-560
-
-
Agashe, D.1
-
52
-
-
79959482487
-
Association between translation efficiency and horizontal gene transfer within microbial communities
-
Tuller T., et al. Association between translation efficiency and horizontal gene transfer within microbial communities. Nucleic Acids Res. 2011, 39:4743-4755.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 4743-4755
-
-
Tuller, T.1
-
53
-
-
76049094717
-
The impact of long-distance horizontal gene transfer on prokaryotic genome size
-
Cordero O.X., Hogeweg P. The impact of long-distance horizontal gene transfer on prokaryotic genome size. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:21748-21753.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 21748-21753
-
-
Cordero, O.X.1
Hogeweg, P.2
-
54
-
-
84859171818
-
Fitness of Escherichia coli strains carrying expressed and partially silent IncN and IncP1 plasmids
-
Humphrey B., et al. Fitness of Escherichia coli strains carrying expressed and partially silent IncN and IncP1 plasmids. BMC Microbiol. 2012, 12:53.
-
(2012)
BMC Microbiol.
, vol.12
, pp. 53
-
-
Humphrey, B.1
-
55
-
-
63049124317
-
DNA plasmid production in different host strains of Escherichia coli
-
Singer A., et al. DNA plasmid production in different host strains of Escherichia coli. J. Ind. Microbiol. Biotechnol. 2009, 36:521-530.
-
(2009)
J. Ind. Microbiol. Biotechnol.
, vol.36
, pp. 521-530
-
-
Singer, A.1
-
56
-
-
79960959549
-
Pervasive sign epistasis between conjugative plasmids and drug-resistance chromosomal mutations
-
Silva R.F., et al. Pervasive sign epistasis between conjugative plasmids and drug-resistance chromosomal mutations. PLoS Genet. 2011, 7:e1002181.
-
(2011)
PLoS Genet.
, vol.7
-
-
Silva, R.F.1
-
57
-
-
60549092956
-
High-resolution mapping of plasmid transcriptomes in different host bacteria
-
Miyakoshi M., et al. High-resolution mapping of plasmid transcriptomes in different host bacteria. BMC Genomics 2009, 10:12.
-
(2009)
BMC Genomics
, vol.10
, pp. 12
-
-
Miyakoshi, M.1
-
58
-
-
51649114043
-
Progress towards understanding the fate of plasmids in bacterial communities
-
Slater F.R., et al. Progress towards understanding the fate of plasmids in bacterial communities. FEMS Microbiol. Ecol. 2008, 66:3-13.
-
(2008)
FEMS Microbiol. Ecol.
, vol.66
, pp. 3-13
-
-
Slater, F.R.1
-
59
-
-
24644435909
-
Assessment of the fitness impacts on Escherichia coli of acquisition of antibiotic resistance genes encoded by different types of genetic element
-
Enne V., et al. Assessment of the fitness impacts on Escherichia coli of acquisition of antibiotic resistance genes encoded by different types of genetic element. J. Antimicrob. Chemother. 2005, 56:544-551.
-
(2005)
J. Antimicrob. Chemother.
, vol.56
, pp. 544-551
-
-
Enne, V.1
-
60
-
-
84858773498
-
A cooperative virulence plasmid imposes a high fitness cost under conditions that induce pathogenesis
-
Platt T.G., et al. A cooperative virulence plasmid imposes a high fitness cost under conditions that induce pathogenesis. Proc. Biol. Sci. 2012, 279:1691-1699.
-
(2012)
Proc. Biol. Sci.
, vol.279
, pp. 1691-1699
-
-
Platt, T.G.1
-
61
-
-
84868369211
-
Streamlining and core genome conservation among highly divergent members of the SAR11 clade
-
Grote J., et al. Streamlining and core genome conservation among highly divergent members of the SAR11 clade. mBio 2012, 3:e00252-12.
-
(2012)
mBio
, vol.3
-
-
Grote, J.1
-
62
-
-
84355161780
-
The significance of nitrogen cost minimization in proteomes of marine microorganisms
-
Grzymski J.J., Dussaq A.M. The significance of nitrogen cost minimization in proteomes of marine microorganisms. ISME J. 2011, 6:71-80.
-
(2011)
ISME J.
, vol.6
, pp. 71-80
-
-
Grzymski, J.J.1
Dussaq, A.M.2
-
63
-
-
79952793415
-
Second-order selection for evolvability in a large Escherichia coli population
-
Woods R.J., et al. Second-order selection for evolvability in a large Escherichia coli population. Science 2011, 331:1433-1436.
-
(2011)
Science
, vol.331
, pp. 1433-1436
-
-
Woods, R.J.1
-
64
-
-
84856258903
-
The molecular diversity of adaptive convergence
-
Tenaillon O., et al. The molecular diversity of adaptive convergence. Science 2012, 335:457-461.
-
(2012)
Science
, vol.335
, pp. 457-461
-
-
Tenaillon, O.1
-
65
-
-
0030994798
-
Amelioration of bacterial genomes: rates of change and exchange
-
Lawrence J.G., Ochman H. Amelioration of bacterial genomes: rates of change and exchange. J. Mol. Evol. 1997, 44:383-397.
-
(1997)
J. Mol. Evol.
, vol.44
, pp. 383-397
-
-
Lawrence, J.G.1
Ochman, H.2
-
66
-
-
39749192558
-
Integration of horizontally transferred genes into regulatory interaction networks takes many million years
-
Lercher M.J., Pal C. Integration of horizontally transferred genes into regulatory interaction networks takes many million years. Mol. Biol. Evol. 2008, 25:559-567.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 559-567
-
-
Lercher, M.J.1
Pal, C.2
-
67
-
-
77955931732
-
Evolution in regulatory regions rapidly compensates the cost of nonoptimal codon usage
-
Amoros-Moya D., et al. Evolution in regulatory regions rapidly compensates the cost of nonoptimal codon usage. Mol. Biol. Evol. 2010, 27:2141-2151.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 2141-2151
-
-
Amoros-Moya, D.1
-
68
-
-
84863668598
-
Repeated, selection-driven genome reduction of accessory genes in experimental populations
-
Lee M-C., Marx C.J. Repeated, selection-driven genome reduction of accessory genes in experimental populations. PLoS Genet. 2012, 8:e1002651.
-
(2012)
PLoS Genet.
, vol.8
-
-
Lee, M.-C.1
Marx, C.J.2
-
69
-
-
84861135633
-
Optimization of gene expression through divergent mutational paths
-
Chou H-H., Marx C.J. Optimization of gene expression through divergent mutational paths. Cell Rep. 2012, 1:133-140.
-
(2012)
Cell Rep.
, vol.1
, pp. 133-140
-
-
Chou, H.-H.1
Marx, C.J.2
-
70
-
-
78649446843
-
Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein
-
Sota M., et al. Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein. ISME J. 2010, 4:1568-1580.
-
(2010)
ISME J.
, vol.4
, pp. 1568-1580
-
-
Sota, M.1
-
71
-
-
0347992016
-
Amelioration of the cost of conjugative plasmid carriage in Escherichia coli K12
-
Dahlberg C., Chao L. Amelioration of the cost of conjugative plasmid carriage in Escherichia coli K12. Genetics 2003, 165:1641-1649.
-
(2003)
Genetics
, vol.165
, pp. 1641-1649
-
-
Dahlberg, C.1
Chao, L.2
-
72
-
-
0031922777
-
Tradeoff between horizontal and vertical modes of transmission in bacterial plasmids
-
Turner P.E., et al. Tradeoff between horizontal and vertical modes of transmission in bacterial plasmids. Evolution 1998, 52:315-329.
-
(1998)
Evolution
, vol.52
, pp. 315-329
-
-
Turner, P.E.1
-
73
-
-
34247884431
-
Performance of the translational apparatus varies with the ecological strategies of bacteria
-
Dethlefsen L., Schmidt T.M. Performance of the translational apparatus varies with the ecological strategies of bacteria. J. Bacteriol. 2007, 189:3237-3245.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 3237-3245
-
-
Dethlefsen, L.1
Schmidt, T.M.2
-
74
-
-
84876437630
-
Synchronous waves of failed soft sweeps in the laboratory: remarkably rampant clonal interference of alleles at a single locus
-
Lee M-C., Marx C.J. Synchronous waves of failed soft sweeps in the laboratory: remarkably rampant clonal interference of alleles at a single locus. Genetics 2013, 193:943-952.
-
(2013)
Genetics
, vol.193
, pp. 943-952
-
-
Lee, M.-C.1
Marx, C.J.2
-
75
-
-
47549097539
-
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
-
Drummond D.A., Wilke C.O. Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Cell 2008, 134:341-352.
-
(2008)
Cell
, vol.134
, pp. 341-352
-
-
Drummond, D.A.1
Wilke, C.O.2
-
76
-
-
33846511690
-
An H-NS-like stealth protein aids horizontal DNA transmission in bacteria
-
Doyle M., et al. An H-NS-like stealth protein aids horizontal DNA transmission in bacteria. Science 2007, 315:251-252.
-
(2007)
Science
, vol.315
, pp. 251-252
-
-
Doyle, M.1
-
77
-
-
79956214651
-
Phage encoded H-NS: a potential achilles heel in the bacterial defence system
-
Skennerton C.T., et al. Phage encoded H-NS: a potential achilles heel in the bacterial defence system. PLoS ONE 2011, 6:e20095.
-
(2011)
PLoS ONE
, vol.6
-
-
Skennerton, C.T.1
-
78
-
-
70349775652
-
An SOS inhibitor that binds to free RecA protein: the PsiB protein
-
Petrova V., et al. An SOS inhibitor that binds to free RecA protein: the PsiB protein. Mol. Cell 2009, 36:121-130.
-
(2009)
Mol. Cell
, vol.36
, pp. 121-130
-
-
Petrova, V.1
-
79
-
-
84870706921
-
A bacteriophage-encoded J-domain protein interacts with the DnaK/Hsp70 chaperone and stabilizes the heat-shock factor σ32 of Escherichia coli
-
Perrody E., et al. A bacteriophage-encoded J-domain protein interacts with the DnaK/Hsp70 chaperone and stabilizes the heat-shock factor σ32 of Escherichia coli. PLoS Genet. 2012, 8:e1003037.
-
(2012)
PLoS Genet.
, vol.8
-
-
Perrody, E.1
-
80
-
-
79953278414
-
The stealth episome: suppression of gene expression on the excised genomic island PPHGI-1 from Pseudomonas syringae pv. phaseolicola
-
Godfrey S.A., et al. The stealth episome: suppression of gene expression on the excised genomic island PPHGI-1 from Pseudomonas syringae pv. phaseolicola. PLoS Pathog. 2011, 7:e1002010.
-
(2011)
PLoS Pathog.
, vol.7
-
-
Godfrey, S.A.1
-
81
-
-
68549133539
-
The evolutionary enigma of sex
-
Otto S.P. The evolutionary enigma of sex. Am. Nat. 2009, 174(Suppl. 1):S1-S14.
-
(2009)
Am. Nat.
, vol.174
, Issue.SUPPL. 1
-
-
Otto, S.P.1
-
82
-
-
0018881923
-
Generation time-prolonging R plasmids: correlation between increases in the generation time of Escherichia coli caused by R plasmids and their molecular size
-
Zünd P., Lebek G. Generation time-prolonging R plasmids: correlation between increases in the generation time of Escherichia coli caused by R plasmids and their molecular size. Plasmid 1980, 3:65-69.
-
(1980)
Plasmid
, vol.3
, pp. 65-69
-
-
Zünd, P.1
Lebek, G.2
-
83
-
-
55049133396
-
Bacteriophage genomics
-
Hatfull G.F. Bacteriophage genomics. Curr. Opin. Micribol. 2008, 11:447-453.
-
(2008)
Curr. Opin. Micribol.
, vol.11
, pp. 447-453
-
-
Hatfull, G.F.1
-
84
-
-
33645094378
-
Protein repertoire of double-stranded DNA bacteriophages
-
Liu J., et al. Protein repertoire of double-stranded DNA bacteriophages. Virus Res. 2006, 117:68-80.
-
(2006)
Virus Res.
, vol.117
, pp. 68-80
-
-
Liu, J.1
-
85
-
-
77950802816
-
Introducing the bacterial 'chromid': not a chromosome, not a plasmid
-
Harrison P.W., et al. Introducing the bacterial 'chromid': not a chromosome, not a plasmid. Trends Microbiol. 2010, 18:141-148.
-
(2010)
Trends Microbiol.
, vol.18
, pp. 141-148
-
-
Harrison, P.W.1
-
87
-
-
79960944810
-
Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates
-
Baltrus D.A., et al. Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates. PLoS Pathog. 2011, 7:e1002132.
-
(2011)
PLoS Pathog.
, vol.7
-
-
Baltrus, D.A.1
|