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Volumn 2, Issue JULY, 2011, Pages

Pseudomonas aeruginosa genomic structure and diversity

Author keywords

Accessory genome; Clonal complex; Core genome; Genome; Genomic island; Oligonucleotide signature; Pseudomonas aeruginosa

Indexed keywords

PSEUDOMONAS AERUGINOSA;

EID: 84859103889     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2011.00150     Document Type: Article
Times cited : (226)

References (59)
  • 1
    • 17644369248 scopus 로고    scopus 로고
    • The MexGHI-OpmD multidrug efflux pump controls growth, antibiotic susceptibility and virulence in Pseudomonas aeruginosa via 4-quinolone-dependent cell-to-cell communication
    • Aendekerk, S., Diggle, S. P., Song, Z., Høiby, N., Cornelis, P., Williams, P., and Cámara, M. (2005). The MexGHI-OpmD multidrug efflux pump controls growth, antibiotic susceptibility and virulence in Pseudomonas aeruginosa via 4-quinolone-dependent cell-to-cell communication. Microbiology 151(PART 4), 1113-1125.
    • (2005) Microbiology , vol.151 , Issue.PART 4 , pp. 1113-1125
    • Aendekerk, S.1    Diggle, S.P.2    Song, Z.3    Høiby, N.4    Cornelis, P.5    Williams, P.6    Cámara, M.7
  • 2
    • 1642300392 scopus 로고    scopus 로고
    • Sequence polymorphism in the glycosylation island and flagellins of Pseudomonas aeruginosa
    • Arora, S. K., Wolfgang, M. C., Lory, S., and Ramphal, R. (2004). Sequence polymorphism in the glycosylation island and flagellins of Pseudomonas aeruginosa. J. Bacteriol. 186, 2115-2122.
    • (2004) J. Bacteriol. , vol.186 , pp. 2115-2122
    • Arora, S.K.1    Wolfgang, M.C.2    Lory, S.3    Ramphal, R.4
  • 3
    • 55749102738 scopus 로고    scopus 로고
    • Hybrid pathogenicity island PAGI-5 contributes to the highly virulent phenotype of a Pseudomonas aeruginosa isolate in mammals
    • Battle, S. E., Meyer, F., Rello, J., Kung, V. L., and Hauser, A. R. (2008). Hybrid pathogenicity island PAGI-5 contributes to the highly virulent phenotype of a Pseudomonas aeruginosa isolate in mammals. J. Bacteriol. 190, 7130-7140.
    • (2008) J. Bacteriol. , vol.190 , pp. 7130-7140
    • Battle, S.E.1    Meyer, F.2    Rello, J.3    Kung, V.L.4    Hauser, A.R.5
  • 5
    • 77954374364 scopus 로고    scopus 로고
    • The Pseudomonas aeruginosa pathogenicity island PAPI-1 is transferred via a novel type IV pilus
    • Carter, M. Q., Chen, J., and Lory, S. (2010). The Pseudomonas aeruginosa pathogenicity island PAPI-1 is transferred via a novel type IV pilus. J. Bacteriol. 192, 3249-3258.
    • (2010) J. Bacteriol. , vol.192 , pp. 3249-3258
    • Carter, M.Q.1    Chen, J.2    Lory, S.3
  • 7
    • 79959841531 scopus 로고    scopus 로고
    • Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs
    • Cramer, N., Klockgether, J., Wrasman, K., Schmidt, M., Davenport, C., and Tümmler, B. (2011). Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs. Environ. Microbiol. 13, 1590-1604.
    • (2011) Environ. Microbiol. , vol.13 , pp. 1590-1604
    • Cramer, N.1    Klockgether, J.2    Wrasman, K.3    Schmidt, M.4    Davenport, C.5    Tümmler, B.6
  • 8
    • 65349096125 scopus 로고    scopus 로고
    • Visualization of Pseudomonas genomic structure by abundant 8-14mer oligonucleotides
    • Davenport, C. F., Wiehlmann, L., Reva, O. N.,and Tümmler,B. (2009).Visualization of Pseudomonas genomic structure by abundant 8-14mer oligonucleotides. Environ. Microbiol. 11, 1092-1104.
    • (2009) Environ. Microbiol. , vol.11 , pp. 1092-1104
    • Davenport, C.F.1    Wiehlmann, L.2    Reva, O.N.3    Tümmler, B.4
  • 10
    • 2442449227 scopus 로고    scopus 로고
    • Genomic islands in pathogenic and environmental microorganisms
    • Dobrindt, U., Hochhut, B., Hentschel, U., and Hacker, J. (2004). Genomic islands in pathogenic and environmental microorganisms. Nat. Rev. Microbiol. 2, 414-424.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 414-424
    • Dobrindt, U.1    Hochhut, B.2    Hentschel, U.3    Hacker, J.4
  • 11
    • 77950678110 scopus 로고    scopus 로고
    • Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa
    • doi: 10.1186/1471-2164-11-234
    • Dötsch, A., Klawonn, F., Jarek, M., Scharfe, M., Blöcker, H., and Häussler, S. (2010). Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa. BMC Genomics 11, 234. doi: 10.1186/1471-2164-11-234
    • (2010) BMC Genomics , vol.11 , pp. 234
    • Dötsch, A.1    Klawonn, F.2    Jarek, M.3    Scharfe, M.4    Blöcker, H.5    Häussler, S.6
  • 12
    • 78650078263 scopus 로고    scopus 로고
    • FtsZ in bacterial cytokinesis: cytoskeleton and force generator all in one
    • Erickson, H. P., Anderson, D. E., and Osawa, M. (2010). FtsZ in bacterial cytokinesis: cytoskeleton and force generator all in one. Microbiol. Mol. Biol. Rev. 74, 504-528.
    • (2010) Microbiol. Mol. Biol. Rev. , vol.74 , pp. 504-528
    • Erickson, H.P.1    Anderson, D.E.2    Osawa, M.3
  • 16
    • 78650778360 scopus 로고    scopus 로고
    • Evolutionary and functional diversity of the Pseudomonas type IVa pilin island
    • Giltner, C. L., Rana, N., Lunardo, M. N., Hussain, A. Q., and Burrows, L. L. (2011). Evolutionary and functional diversity of the Pseudomonas type IVa pilin island. Environ. Microbiol. 13, 250-264.
    • (2011) Environ. Microbiol. , vol.13 , pp. 250-264
    • Giltner, C.L.1    Rana, N.2    Lunardo, M.N.3    Hussain, A.Q.4    Burrows, L.L.5
  • 17
    • 7744220530 scopus 로고    scopus 로고
    • A signaling network reciprocally regulates genes associated with acute infection and chronic persistence in Pseudomonas aeruginosa
    • Goodman,A. L., Kulasekara, B., Rietsch, A., Boyd, D., Smith, R. S., and Lory, S. (2004). A signaling network reciprocally regulates genes associated with acute infection and chronic persistence in Pseudomonas aeruginosa. Dev. Cell 7, 745-754.
    • (2004) Dev. Cell , vol.7 , pp. 745-754
    • Goodman, A.L.1    Kulasekara, B.2    Rietsch, A.3    Boyd, D.4    Smith, R.S.5    Lory, S.6
  • 18
    • 55049133396 scopus 로고    scopus 로고
    • Bacteriophage genomics
    • Hatfull, G. F. (2008). Bacteriophage genomics. Curr. Opin. Microbiol. 11, 447-453.
    • (2008) Curr. Opin. Microbiol. , vol.11 , pp. 447-453
    • Hatfull, G.F.1
  • 20
    • 0033753983 scopus 로고    scopus 로고
    • Monitoring genome evolution ex vivo: reversible chromosomal integration of a 106 kb plasmid at two tRNA(Lys) gene loci in sequential Pseudomonas aeruginosa airway isolates
    • Kiewitz, C., Larbig, K., Klockgether, J., Weinel, C., and Tümmler, B. (2000). Monitoring genome evolution ex vivo: reversible chromosomal integration of a 106 kb plasmid at two tRNA(Lys) gene loci in sequential Pseudomonas aeruginosa airway isolates. Microbiology 146(Pt 10), 2365-2373.
    • (2000) Microbiology , vol.146 , Issue.PART 10 , pp. 2365-2373
    • Kiewitz, C.1    Larbig, K.2    Klockgether, J.3    Weinel, C.4    Tümmler, B.5
  • 22
    • 0347285389 scopus 로고    scopus 로고
    • Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C
    • Klockgether, J., Reva, O., Larbig, K., and Tümmler, B. (2004). Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C. J. Bacteriol. 186, 518-534.
    • (2004) J. Bacteriol. , vol.186 , pp. 518-534
    • Klockgether, J.1    Reva, O.2    Larbig, K.3    Tümmler, B.4
  • 23
    • 33947108811 scopus 로고    scopus 로고
    • Diversity of the abundant pKLC102/PAGI-2 family of genomic islands in Pseudomonas aeruginosa
    • Klockgether, J., Würdemann, D., Reva, O., Wiehlmann, L., and Tümmler, B. (2007). Diversity of the abundant pKLC102/PAGI-2 family of genomic islands in Pseudomonas aeruginosa. J. Bacteriol. 189, 2443-2459.
    • (2007) J. Bacteriol. , vol.189 , pp. 2443-2459
    • Klockgether, J.1    Würdemann, D.2    Reva, O.3    Wiehlmann, L.4    Tümmler, B.5
  • 25
    • 0037219570 scopus 로고    scopus 로고
    • Impact of large chromosomal inversions on the adaptation and evolution of Pseudomonas aeruginosa chronically colonizing cystic fibrosis lungs
    • Kresse, A. U., Dinesh, S. D., Larbig, K., and Römling, U. (2003). Impact of large chromosomal inversions on the adaptation and evolution of Pseudomonas aeruginosa chronically colonizing cystic fibrosis lungs. Mol. Microbiol. 47, 145-158.
    • (2003) Mol. Microbiol. , vol.47 , pp. 145-158
    • Kresse, A.U.1    Dinesh, S.D.2    Larbig, K.3    Römling, U.4
  • 28
    • 2942614967 scopus 로고    scopus 로고
    • Significant differences in type IV pilin allele distribution among Pseudomonas aeruginosa isolates from cystic fibrosis (CF) versus non-CF patients
    • Kus, J. V., Tullis, E., Cvitkovitch, D. G., and Burrows, L. L. (2004). Significant differences in type IV pilin allele distribution among Pseudomonas aeruginosa isolates from cystic fibrosis (CF) versus non-CF patients. Microbiology 150(Pt 5), 1315-1326.
    • (2004) Microbiology , vol.150 , Issue.PART 5 , pp. 1315-1326
    • Kus, J.V.1    Tullis, E.2    Cvitkovitch, D.G.3    Burrows, L.L.4
  • 31
    • 0035148906 scopus 로고    scopus 로고
    • Identification of a genomic island present in the majority of pathogenic isolates of Pseudomonas aeruginosa
    • Liang, X., Pham, X. Q., Olson, M. V., and Lory, S. (2001). Identification of a genomic island present in the majority of pathogenic isolates of Pseudomonas aeruginosa. J. Bacteriol. 183, 843-853.
    • (2001) J. Bacteriol. , vol.183 , pp. 843-853
    • Liang, X.1    Pham, X.Q.2    Olson, M.V.3    Lory, S.4
  • 34
    • 0036285760 scopus 로고    scopus 로고
    • Spread of an epidemic Pseudomonas aeruginosa strain from a patient with cystic fibrosis (CF) to non-CF relatives
    • McCallum,S. J.,Gallagher,M. J.,Corkill, J. E., Hart, C. A., Ledson, M. J., and Walshaw, M. J. (2002). Spread of an epidemic Pseudomonas aeruginosa strain from a patient with cystic fibrosis (CF) to non-CF relatives. Thorax 57, 559-560.
    • (2002) Thorax , vol.57 , pp. 559-560
    • McCallum, S.J.1    Gallagher, M.J.2    Corkill, J.E.3    Hart, C.A.4    Ledson, M.J.5    Walshaw, M.J.6
  • 35
  • 36
    • 63449128597 scopus 로고    scopus 로고
    • Beta-lactam resistance response triggered by inactivation of a non-essential penicillin-binding protein
    • doi: 10.1371/journal.ppat.1000353
    • Moya, B., Dötsch, A., Juan, C., Blázquez, J., Zamorano, L., Häussler, S., and Oliver, A. (2009). Betalactam resistance response triggered by inactivation of a nonessential penicillin-binding protein. PLoS Pathog. 5, e1000353. doi: 10.1371/journal.ppat.1000353
    • (2009) PLoS Pathog , vol.5
    • Moya, B.1    Dötsch, A.2    Juan, C.3    Blázquez, J.4    Zamorano, L.5    Häussler, S.6    Oliver, A.7
  • 37
    • 33845924185 scopus 로고    scopus 로고
    • Interstrain transfer of the large pathogenicity island (PAPI-1) of Pseudomonas aeruginosa
    • Qiu, X., Gurkar, A. U., and Lory, S. (2006). Interstrain transfer of the large pathogenicity island (PAPI-1) of Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. U.S.A. 103, 19830-19835.
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 19830-19835
    • Qiu, X.1    Gurkar, A.U.2    Lory, S.3
  • 38
    • 84920091516 scopus 로고    scopus 로고
    • Genomics, Life Style and Molecular Architecture.NewYork: Kluwer Academics/Plenum Publishers
    • Ramos, J. L. (ed.). (2004). Pseudomonas Volume 1: Genomics, Life Style and Molecular Architecture.NewYork: Kluwer Academics/Plenum Publishers.
    • Pseudomonas , vol.1
    • Ramos, J.L.1
  • 40
    • 13244279471 scopus 로고    scopus 로고
    • Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns
    • doi: 10.1186/1471-2105-5-90
    • Reva, O. N., and Tümmler, B. (2004). Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns. BMC Bioinformatics 5, 90. doi: 10.1186/1471-2105-5-90
    • (2004) BMC Bioinformatics , vol.5 , pp. 90
    • Reva, O.N.1    Tümmler, B.2
  • 41
    • 27644545371 scopus 로고    scopus 로고
    • Differentiation of regions with atypical oligonucleotide composition in bacterial genomes
    • doi: 10.1186/1471-2105-6-251
    • Reva, O. N., and Tümmler, B. (2005). Differentiation of regions with atypical oligonucleotide composition in bacterial genomes. BMC Bioinformatics 6, 251. doi: 10.1186/1471-2105-6-251
    • (2005) BMC Bioinformatics , vol.6 , pp. 251
    • Reva, O.N.1    Tümmler, B.2
  • 42
    • 0029160720 scopus 로고
    • Gradient of genomic diversity in the Pseudomonas aeruginosa chromosome
    • Römling, U., Greipel, J., and Tümmler, B. (1995). Gradient of genomic diversity in the Pseudomonas aeruginosa chromosome. Mol. Microbiol. 17, 323-332.
    • (1995) Mol. Microbiol. , vol.17 , pp. 323-332
    • Römling, U.1    Greipel, J.2    Tümmler, B.3
  • 43
    • 0031583479 scopus 로고    scopus 로고
    • Large genome rearrangements discovered by the detailed analysis of 21 Pseudomonas aeruginosa clone C isolates found in environment and disease habitats
    • Römling, U., Schmidt, K. D., and Tümmler, B. (1997). Large genome rearrangements discovered by the detailed analysis of 21 Pseudomonas aeruginosa clone C isolates found in environment and disease habitats. J. Mol. Biol. 271, 386-404.
    • (1997) J. Mol. Biol. , vol.271 , pp. 386-404
    • Römling, U.1    Schmidt, K.D.2    Tümmler, B.3
  • 45
    • 0030027260 scopus 로고    scopus 로고
    • Comparative genome mapping of Pseudomonas aeruginosa PAO with P. aeruginosa C, which belongs to a major clone in cystic fibrosis patients and aquatic habitats
    • Schmidt, K. D., Tümmler, B., and Römling, U. (1996). Comparative genome mapping of Pseudomonas aeruginosa PAO with P. aeruginosa C, which belongs to a major clone in cystic fibrosis patients and aquatic habitats. J. Bacteriol. 178, 85-93.
    • (1996) J. Bacteriol. , vol.178 , pp. 85-93
    • Schmidt, K.D.1    Tümmler, B.2    Römling, U.3
  • 49
    • 14644394879 scopus 로고    scopus 로고
    • Evidence for diversifying selection at the pyoverdine locus of Pseudomonas aeruginosa
    • Smith, E. E., Sims, E. H., Spencer, D. H., Kaul, R., and Olson, M. V. (2005). Evidence for diversifying selection at the pyoverdine locus of Pseudomonas aeruginosa. J. Bacteriol. 187, 2138-2147.
    • (2005) J. Bacteriol. , vol.187 , pp. 2138-2147
    • Smith, E.E.1    Sims, E.H.2    Spencer, D.H.3    Kaul, R.4    Olson, M.V.5
  • 50
    • 28044459818 scopus 로고    scopus 로고
    • Characterization of temporal protein production in Pseudomonas aeruginosa biofilms
    • Southey-Pillig, C. J., Davies, D. G., and Sauer, K. (2005). Characterization of temporal protein production in Pseudomonas aeruginosa biofilms. J. Bacteriol. 187, 8114-8126.
    • (2005) J. Bacteriol. , vol.187 , pp. 8114-8126
    • Southey-Pillig, C.J.1    Davies, D.G.2    Sauer, K.3
  • 51
    • 0030569411 scopus 로고    scopus 로고
    • Genetic diversity of flagellins of Pseudomonas aeruginosa
    • Spangenberg, C., Heuer, T., Bürger, C., and Tümmler, B. (1996). Genetic diversity of flagellins of Pseudomonas aeruginosa. FEBS Lett. 396, 213-217.
    • (1996) FEBS Lett , vol.396 , pp. 213-217
    • Spangenberg, C.1    Heuer, T.2    Bürger, C.3    Tümmler, B.4
  • 53
    • 3242881003 scopus 로고    scopus 로고
    • Exploring the concept of clonality in bacteria
    • Spratt, B. G. (2004). Exploring the concept of clonality in bacteria. Methods Mol. Biol. 266, 323-352.
    • (2004) Methods Mol. Biol. , vol.266 , pp. 323-352
    • Spratt, B.G.1
  • 56
    • 33744986533 scopus 로고    scopus 로고
    • Glycosylation of b-type flagellin of Pseudomonas aeruginosa: structural and genetic basis
    • Verma, A., Schirm, M., Arora, S. K., Thibault, P., Logan, S. M., and Ramphal, R. (2006). Glycosylation of b-type flagellin of Pseudomonas aeruginosa: structural and genetic basis. J. Bacteriol. 188, 4395-4403.
    • (2006) J. Bacteriol. , vol.188 , pp. 4395-4403
    • Verma, A.1    Schirm, M.2    Arora, S.K.3    Thibault, P.4    Logan, S.M.5    Ramphal, R.6


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