-
2
-
-
0031740749
-
An unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp
-
Ravatn R, Studer S, Zehnder AJ, van der Meer JR. 1998. Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. strain B13. J. Bacteriol. 180:5505-5514.
-
(1998)
strain B13. J. Bacteriol.
, vol.180
, pp. 5505-5514
-
-
Ravatn, R.1
Studer, S.2
Zehnder, A.J.3
Der Meer, V.J.R.4
-
3
-
-
33644745555
-
The clc element of Pseudomonas sp, strain B13, a genomic island with various catabolic properties.
-
Gaillard M, Vallaeys T, Vorholter FJ, Minoia M, Werlen C, Sentchilo V, Puhler A, van der Meer JR. 2006. The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties. J. Bacteriol. 188:1999-2013.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 1999-2013
-
-
Gaillard, M.1
Vallaeys, T.2
Vorholter, F.J.3
Minoia, M.4
Werlen, C.5
Sentchilo, V.6
Puhler, A.7
Der Meer, V.J.R.8
-
4
-
-
78751687819
-
A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13
-
Miyazaki R, van der Meer JR. 2011. A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13. Mol. Microbiol. 79:743-758.
-
(2011)
Mol. Microbiol.
, vol.79
, pp. 743-758
-
-
Miyazaki, R.1
Der Meer, V.J.R.2
-
5
-
-
84873407777
-
Cell differentiation to "mating bodies" induced by an integrating and conjugative element in free-living bacteria
-
Reinhard F, Miyazaki R, Pradervand N, van der Meer JR. 2013. Cell differentiation to "mating bodies" induced by an integrating and conjugative element in free-living bacteria. Curr. Biol. 23:255-259.
-
(2013)
Curr. Biol.
, vol.23
, pp. 255-259
-
-
Reinhard, F.1
Miyazaki, R.2
Pradervand, N.3
Der Meer, V.J.R.4
-
6
-
-
58549105920
-
Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas
-
Minoia M, Gaillard M, Reinhard F, Stojanov M, Sentchilo V, van der Meer JR. 2008. Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas. Proc. Natl. Acad. Sci. U. S. A. 105: 20792-20797.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 20792-20797
-
-
Minoia, M.1
Gaillard, M.2
Reinhard, F.3
Stojanov, M.4
Sentchilo, V.5
Der Meer, V.J.R.6
-
7
-
-
84864600754
-
Cellular variability of RpoS expression underlies subpopulation activation of an integrative and conjugative element
-
doi:10.1371/journal.pgen.1002818.
-
Miyazaki R, Minoia M, Pradervand N, Sulser S, Reinhard F, van der Meer JR. 2012. Cellular variability of RpoS expression underlies subpopulation activation of an integrative and conjugative element. PLoS Genet. 8:e1002818. doi:10.1371/journal.pgen.1002818.
-
(2012)
PLoS Genet.
, vol.8
-
-
Miyazaki, R.1
Minoia, M.2
Pradervand, N.3
Sulser, S.4
Reinhard, F.5
Der Meer, V.J.R.6
-
8
-
-
0038782123
-
Unusual integrase gene expression on the clc genomic island in Pseudomonas sp
-
Sentchilo V, Ravatn R, Werlen C, Zehnder AJ, van der Meer JR. 2003. Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13. J. Bacteriol. 185:4530-4538.
-
(2003)
strain B13. J. Bacteriol.
, vol.185
, pp. 4530-4538
-
-
Sentchilo, V.1
Ravatn, R.2
Werlen, C.3
Zehnder, A.J.4
Der Meer, V.J.R.5
-
9
-
-
65949092317
-
Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp
-
Sentchilo V, Czechowska K, Pradervand N, Minoia M, Miyazaki R, van der Meer JR. 2009. Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13. Mol. Microbiol. 72:1293-1306.
-
(2009)
strain B13. Mol. Microbiol.
, vol.72
, pp. 1293-1306
-
-
Sentchilo, V.1
Czechowska, K.2
Pradervand, N.3
Minoia, M.4
Miyazaki, R.5
Der Meer, V.J.R.6
-
10
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors
-
Yanisch-Perron C, Vieira J, Messing J. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-perron, C.1
Vieira, J.2
Messing, J.3
-
11
-
-
0026662710
-
An improved suicide vector for construction of chromosomal insertion mutations in bacteria
-
Penfold RJ, Pemberton JM. 1992. An improved suicide vector for construction of chromosomal insertion mutations in bacteria. Gene 118:145- 146.
-
(1992)
Gene
, vol.118
-
-
Penfold, R.J.1
Pemberton, J.M.2
-
12
-
-
0000527903
-
Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans
-
Figurski DH, Helinski DR. 1979. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc. Natl. Acad. Sci. U. S. A. 76:1648-1652.
-
(1979)
Proc. Natl. Acad. Sci. U. S. A.
, vol.76
, pp. 1648-1652
-
-
Figurski, D.H.1
Helinski, D.R.2
-
13
-
-
0003903343
-
Molecular cloning: a laboratory manual, 3rd ed
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
Sambrook J, Russell DW. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2001)
-
-
Sambrook, J.1
Russell, D.W.2
-
14
-
-
0004217184
-
Manual of methods for general bacteriology
-
American Society for Microbiology, Washington, DC.
-
Gerhardt P, Murray RGE, Costilow RN, Nester EW, Wood WA, Kreig NR, Briggs Phillips G. 1981. Manual of methods for general bacteriology. American Society for Microbiology, Washington, DC.
-
(1981)
-
-
Gerhardt, P.1
Murray, R.G.E.2
Costilow, R.N.3
Nester, E.W.4
Wood, W.A.5
Kreig, N.R.6
Briggs Phillips, G.7
-
15
-
-
0038046819
-
Characterization of two alternative promoters for integrase expression in the clc genomic island of Pseudomonas sp
-
Sentchilo V, Zehnder AJ, van der Meer JR. 2003. Characterization of two alternative promoters for integrase expression in the clc genomic island of Pseudomonas sp. strain B13. Mol. Microbiol. 49:93-104.
-
(2003)
strain B13. Mol. Microbiol.
, vol.49
, pp. 93-104
-
-
Sentchilo, V.1
Zehnder, A.J.2
Der Meer, V.J.R.3
-
16
-
-
21444457864
-
A Tn7-based broad-range bacterial cloning and expression system
-
Choi KH, Gaynor JB, White KG, Lopez C, Bosio CM, Karkhoff- Schweizer RR, Schweizer HP. 2005. A Tn7-based broad-range bacterial cloning and expression system. Nat. Methods 2:443-448.
-
(2005)
Nat. Methods
, vol.2
, pp. 443-448
-
-
Choi, K.H.1
Gaynor, J.B.2
White, K.G.3
Lopez, C.4
Bosio, C.M.5
Karkhoff-Schweizer, R.R.6
Schweizer, H.P.7
-
18
-
-
0018224280
-
Trans-complementationdependent replication of a low molecular weight origin fragment from plasmid R6K
-
Kolter R, Inuzuka M, Helinski DR. 1978. Trans-complementationdependent replication of a low molecular weight origin fragment from plasmid R6K. Cell 15:1199-1208.
-
(1978)
Cell
, vol.15
, pp. 1199-1208
-
-
Kolter, R.1
Inuzuka, M.2
Helinski, D.R.3
-
19
-
-
17144380831
-
Characterization of HbpR binding by site-directed mutagenesis of its DNA-binding site and by deletion of the effector domain
-
Tropel D, van der Meer JR. 2005. Characterization of HbpR binding by site-directed mutagenesis of its DNA-binding site and by deletion of the effector domain. FEBS J. 272:1756-1766.
-
(2005)
FEBS J.
, vol.272
, pp. 1756-1766
-
-
Tropel, D.1
Der Meer, V.J.R.2
-
20
-
-
44349111947
-
Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1
-
Gaillard M, Pernet N, Vogne C, Hagenbuchle O, van der Meer JR. 2008. Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. Proc. Natl. Acad. Sci. U. S. A. 105:7058-7063.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 7058-7063
-
-
Gaillard, M.1
Pernet, N.2
Vogne, C.3
Hagenbuchle, O.4
Der Meer, V.J.R.5
-
21
-
-
23944505538
-
New insights into metabolic properties of marine bacteria encoding proteorhodopsins
-
doi:10.1371/journal.pbio.0030273.
-
Sabehi G, Loy A, Jung KH, Partha R, Spudich JL, Isaacson T, Hirschberg J, Wagner M, Beja O. 2005. New insights into metabolic properties of marine bacteria encoding proteorhodopsins. PLoS Biol. 3:e273. doi:10 .1371/journal.pbio.0030273.
-
(2005)
PLoS Biol.
, vol.3
-
-
Sabehi, G.1
Loy, A.2
Jung, K.H.3
Partha, R.4
Spudich, J.L.5
Isaacson, T.6
Hirschberg, J.7
Wagner, M.8
Beja, O.9
-
22
-
-
32344451042
-
DNA arms do the legwork to ensure the directionality of lambda sitespecific recombination
-
Radman-Livaja M, Biswas T, Ellenberger T, Landy A, Aihara H. 2006. DNA arms do the legwork to ensure the directionality of lambda sitespecific recombination. Curr. Opin. Struct. Biol. 16:42-50.
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, pp. 42-50
-
-
Radman-livaja, M.1
Biswas, T.2
Ellenberger, T.3
Landy, A.4
Aihara, H.5
-
23
-
-
1542397137
-
Phage integrases: biology and applications
-
Groth AC, Calos MP. 2004. Phage integrases: biology and applications. J. Mol. Biol. 335:667-678.
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 667-678
-
-
Groth, A.C.1
Calos, M.P.2
-
24
-
-
0032575051
-
A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants
-
Hoang TT, Karkhoff-Schweizer RR, Kutchma AJ, Schweizer HP. 1998. A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants. Gene 212:77-86.
-
(1998)
Gene
, vol.212
, pp. 77-86
-
-
Hoang, T.T.1
Karkhoff-schweizer, R.R.2
Kutchma, A.J.3
Schweizer, H.P.4
-
25
-
-
0031869639
-
Plasposons: modular self-cloning minitransposon derivatives for rapid genetic analysis of gram-negative bacterial genomes
-
Dennis JJ, Zylstra GJ. 1998. Plasposons: modular self-cloning minitransposon derivatives for rapid genetic analysis of gram-negative bacterial genomes. Appl. Environ. Microbiol. 64:2710-2715.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 2710-2715
-
-
Dennis, J.J.1
Zylstra, G.J.2
-
26
-
-
0033968474
-
Integrationproficient plasmids for Pseudomonas aeruginosa: site-specific integration and use for engineering of reporter and expression strains
-
Hoang TT, Kutchma AJ, Becher A, Schweizer HP. 2000. Integrationproficient plasmids for Pseudomonas aeruginosa: site-specific integration and use for engineering of reporter and expression strains. Plasmid 43:59- 72.
-
(2000)
Plasmid
, vol.43
-
-
Hoang, T.T.1
Kutchma, A.J.2
Becher, A.3
Schweizer, H.P.4
-
27
-
-
13944259584
-
Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts
-
Martinez A, Kolvek SJ, Yip CL, Hopke J, Brown KA, MacNeil IA, Osburne MS. 2004. Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts. Appl. Environ. Microbiol. 70:2452-2463.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 2452-2463
-
-
Martinez, A.1
Kolvek, S.J.2
Yip, C.L.3
Hopke, J.4
Brown, K.A.5
Macneil, I.A.6
Osburne, M.S.7
-
28
-
-
39649119065
-
Human genomic site-specific recombination catalyzed by coliphage HK022 integrase
-
Harel-Levi G, Goltsman J, Tuby CN, Yagil E, Kolot M. 2008. Human genomic site-specific recombination catalyzed by coliphage HK022 integrase. J. Biotechnol. 134:46-54.
-
(2008)
J. Biotechnol.
, vol.134
, pp. 46-54
-
-
Harel-levi, G.1
Goltsman, J.2
Tuby, C.N.3
Yagil, E.4
Kolot, M.5
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