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Volumn 17, Issue 7, 2016, Pages 379-391

Evolution by gene loss

Author keywords

[No Author keywords available]

Indexed keywords

ENVIRONMENT; GENE LOSS; GENOME; HUMAN; KNOCKOUT GENE; META ANALYSIS (TOPIC); MOLECULAR EVOLUTION; MUTATION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; REVIEW; ANIMAL; GENETIC SELECTION; GENETIC VARIATION; GENETICS; GENOMICS; PHENOTYPE; POPULATION GENETICS; PROCEDURES;

EID: 84963556549     PISSN: 14710056     EISSN: 14710064     Source Type: Journal    
DOI: 10.1038/nrg.2016.39     Document Type: Review
Times cited : (496)

References (217)
  • 2
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force, A., et al. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151, 1531-1545 (1999
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1
  • 3
    • 0347033327 scopus 로고    scopus 로고
    • EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates
    • Kortschak, R. D., Samuel, G., Saint, R., & Miller, D. J. EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates. Curr. Biol. 13, 2190-2195 (2003
    • (2003) Curr. Biol , vol.13 , pp. 2190-2195
    • Kortschak, R.D.1    Samuel, G.2    Saint, R.3    Miller, D.J.4
  • 4
    • 27744503847 scopus 로고    scopus 로고
    • Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians
    • Technau, U., et al. Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians. Trends Genet. 21, 633-639 (2005
    • (2005) Trends Genet , vol.21 , pp. 633-639
    • Technau, U.1
  • 5
    • 34447300950 scopus 로고    scopus 로고
    • Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
    • Putnam, N. H., et al. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317, 86-94 (2007
    • (2007) Science , vol.317 , pp. 86-94
    • Putnam, N.H.1
  • 6
    • 19944432478 scopus 로고    scopus 로고
    • Unexpected complexity of the Wnt gene family in a sea anemone
    • Kusserow, A., et al. Unexpected complexity of the Wnt gene family in a sea anemone. Nature 433, 156-160 (2005
    • (2005) Nature , vol.433 , pp. 156-160
    • Kusserow, A.1
  • 7
    • 0035907342 scopus 로고    scopus 로고
    • Molecular biology and evolution can genes explain biological complexity?
    • Szathmary, E., Jordan, F., & Pal, C. Molecular biology and evolution. Can genes explain biological complexity? Science 292, 1315-1316 (2001
    • (2001) Science , vol.292 , pp. 1315-1316
    • Szathmary, E.1    Jordan, F.2    Pal, C.3
  • 8
    • 84872893458 scopus 로고    scopus 로고
    • Insights into bilaterian evolution from three spiralian genomes
    • Simakov, O., et al. Insights into bilaterian evolution from three spiralian genomes. Nature 493, 526-531 (2013
    • (2013) Nature , vol.493 , pp. 526-531
    • Simakov, O.1
  • 9
    • 33750995860 scopus 로고    scopus 로고
    • The genome of the sea urchin Strongylocentrotus purpuratus
    • Sea Urchin Genome Sequencing Consortium et al
    • Sea Urchin Genome Sequencing Consortium, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science 314, 941-952 (2006
    • (2006) Science , vol.314 , pp. 941-952
  • 10
    • 45749086679 scopus 로고    scopus 로고
    • The amphioxus genome and the evolution of the chordate karyotype
    • Putnam, N. H., et al. The amphioxus genome and the evolution of the chordate karyotype. Nature 453, 1064-1071 (2008
    • (2008) Nature , vol.453 , pp. 1064-1071
    • Putnam, N.H.1
  • 11
    • 2242464840 scopus 로고    scopus 로고
    • The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins
    • Dehal, P., et al. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298, 2157-2167 (2002
    • (2002) Science , vol.298 , pp. 2157-2167
    • Dehal, P.1
  • 12
    • 0037270345 scopus 로고    scopus 로고
    • Seeing chordate evolution through the Ciona genome sequence
    • Cañestro, C., Bassham, S., & Postlethwait, J. H. Seeing chordate evolution through the Ciona genome sequence. Genome Biol. 4, 208-211 (2003
    • (2003) Genome Biol , vol.4 , pp. 208-211
    • Cañestro, C.1    Bassham, S.2    Postlethwait, J.H.3
  • 13
  • 14
    • 19944427992 scopus 로고    scopus 로고
    • Remodelling of the homeobox gene complement in the tunicate oikopleura dioica
    • Edvardsen, R. B., et al. Remodelling of the homeobox gene complement in the tunicate Oikopleura dioica. Curr. Biol. 15, R12-R13 (2005
    • (2005) Curr. Biol , vol.15 , pp. R12-R13
    • Edvardsen, R.B.1
  • 15
    • 78649705889 scopus 로고    scopus 로고
    • Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
    • Denoeud, F., et al. Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate. Science 330, 1381-1385 (2010
    • (2010) Science , vol.330 , pp. 1381-1385
    • Denoeud, F.1
  • 16
    • 77955490196 scopus 로고    scopus 로고
    • The Amphimedon queenslandica genome and the evolution of animal complexity
    • Srivastava, M., et al. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 466, 720-726 (2010
    • (2010) Nature , vol.466 , pp. 720-726
    • Srivastava, M.1
  • 17
    • 84908403148 scopus 로고    scopus 로고
    • Calcisponges have a parahox gene and dynamic expression of dispersed nk homeobox genes
    • Fortunato, S. A., et al. Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes. Nature 514, 620-623 (2014
    • (2014) Nature , vol.514 , pp. 620-623
    • Fortunato, S.A.1
  • 18
    • 39149110563 scopus 로고    scopus 로고
    • The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans
    • King, N., et al. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature 451, 783-788 (2008
    • (2008) Nature , vol.451 , pp. 783-788
    • King, N.1
  • 19
    • 84883125088 scopus 로고    scopus 로고
    • The Capsaspora genome reveals a complex unicellular prehistory of animals
    • Suga, H., et al. The Capsaspora genome reveals a complex unicellular prehistory of animals. Nat. Commun. 4, 2325 (2013
    • (2013) Nat. Commun , vol.4 , pp. 2325
    • Suga, H.1
  • 20
    • 79955094039 scopus 로고    scopus 로고
    • The homeodomain complement of the ctenophore mnemiopsis leidyi suggests that ctenophora and porifera diverged prior to the parahoxozoa
    • Ryan, J. F., et al. The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa. Evodevo 1, 9 (2010
    • (2010) Evodevo , vol.1 , pp. 9
    • Ryan, J.F.1
  • 21
    • 84867843762 scopus 로고    scopus 로고
    • Ghost loci imply hox and parahox existence in the last common ancestor of animals
    • Mendivil Ramos, O., Barker, D., & Ferrier, D. E. Ghost loci imply Hox and ParaHox existence in the last common ancestor of animals. Curr. Biol. 22, 1951-1956 (2012
    • (2012) Curr. Biol , vol.22 , pp. 1951-1956
    • Mendivil Ramos, O.1    Barker, D.2    Ferrier, D.E.3
  • 22
    • 33750344923 scopus 로고    scopus 로고
    • Streamlining and simplification of microbial genome architecture
    • Lynch, M. Streamlining and simplification of microbial genome architecture. Annu. Rev. Microbiol. 60, 327-349 (2006
    • (2006) Annu. Rev. Microbiol , vol.60 , pp. 327-349
    • Lynch, M.1
  • 23
    • 39449118068 scopus 로고    scopus 로고
    • Learning how to live together: Genomic insights into prokaryote-animal symbioses
    • Moya, A., Pereto, J., Gil, R., & Latorre, A. Learning how to live together: genomic insights into prokaryote-animal symbioses. Nat. Rev. Genet. 9, 218-229 (2008
    • (2008) Nat. Rev. Genet , vol.9 , pp. 218-229
    • Moya, A.1    Pereto, J.2    Gil, R.3    Latorre, A.4
  • 24
    • 83855165692 scopus 로고    scopus 로고
    • Extreme genome reduction in symbiotic bacteria
    • McCutcheon, J. P., & Moran, N. A. Extreme genome reduction in symbiotic bacteria. Nat. Rev. Microbiol. 10, 13-26 (2012
    • (2012) Nat. Rev. Microbiol , vol.10 , pp. 13-26
    • McCutcheon, J.P.1    Moran, N.A.2
  • 25
    • 84881612486 scopus 로고    scopus 로고
    • Genome reduction as the dominant mode of evolution
    • Wolf, Y. I., & Koonin, E. V. Genome reduction as the dominant mode of evolution. BioEssays 35, 829-837 (2013
    • (2013) Bio Essays , vol.35 , pp. 829-837
    • Wolf, Y.I.1    Koonin, E.V.2
  • 26
    • 84925884132 scopus 로고    scopus 로고
    • Mycobacterial phylogenomics: An enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families
    • Librado, P., Vieira, F. G., Sanchez-Gracia, A., Kolokotronis, S. O., & Rozas, J. Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families. Genome Biol. Evol. 6, 1454-1465 (2014
    • (2014) Genome Biol. Evol , vol.6 , pp. 1454-1465
    • Librado, P.1    Vieira, F.G.2    Sanchez-Gracia, A.3    Kolokotronis, S.O.4    Rozas, J.5
  • 27
    • 14544294428 scopus 로고    scopus 로고
    • The genome of the protist parasite Entamoeba histolytica
    • Loftus, B., et al. The genome of the protist parasite Entamoeba histolytica. Nature 433, 865-868 (2005
    • (2005) Nature , vol.433 , pp. 865-868
    • Loftus, B.1
  • 28
    • 78650122420 scopus 로고    scopus 로고
    • Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism
    • Spanu, P. D., et al. Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 330, 1543-1546 (2010
    • (2010) Science , vol.330 , pp. 1543-1546
    • Spanu, P.D.1
  • 29
    • 79959939048 scopus 로고    scopus 로고
    • Extreme reduction and compaction of microsporidian genomes
    • Peyretaillade, E., et al. Extreme reduction and compaction of microsporidian genomes. Res. Microbiol. 162, 598-606 (2011
    • (2011) Res. Microbiol , vol.162 , pp. 598-606
    • Peyretaillade, E.1
  • 30
    • 84874229463 scopus 로고    scopus 로고
    • Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants
    • De Smet, R., et al. Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants. Proc. Natl Acad. Sci. USA 110, 2898-2903 (2013
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 2898-2903
    • De Smet, R.1
  • 32
    • 84907382530 scopus 로고    scopus 로고
    • Genomes in turmoil: Quantification of genome dynamics in prokaryote supergenomes
    • Puigbo, P., Lobkovsky, A. E., Kristensen, D. M., Wolf, Y. I., & Koonin, E. V. Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes. BMC Biol. 12, 66 (2014
    • (2014) BMC Biol , vol.12 , pp. 66
    • Puigbo, P.1    Lobkovsky, A.E.2    Kristensen, D.M.3    Wolf, Y.I.4    Koonin, E.V.5
  • 33
    • 84922775800 scopus 로고    scopus 로고
    • Origins of major archaeal clades correspond to gene acquisitions from bacteria
    • Nelson-Sathi, S., et al. Origins of major archaeal clades correspond to gene acquisitions from bacteria. Nature 517, 77-80 (2015
    • (2015) Nature , vol.517 , pp. 77-80
    • Nelson-Sathi, S.1
  • 34
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • Wendel, J. F. Genome evolution in polyploids. Plant Mol. Biol. 42, 225-249 (2000
    • (2000) Plant Mol. Biol , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 35
    • 84902959559 scopus 로고    scopus 로고
    • Polyploidy-associated genome modifications during land plant evolution
    • Jiao, Y., & Paterson, A. H. Polyploidy-associated genome modifications during land plant evolution. Phil. Trans. R. Soc. B 369, 20130355 (2014
    • (2014) Phil. Trans. R. Soc. B , vol.369 , pp. 20130355
    • Jiao, Y.1    Paterson, A.H.2
  • 36
    • 36949031286 scopus 로고    scopus 로고
    • Yeast genome evolution - The origin of the species
    • Scannell, D. R., Butler, G., & Wolfe, K. H. Yeast genome evolution - the origin of the species. Yeast 24, 929-942 (2007
    • (2007) Yeast , vol.24 , pp. 929-942
    • Scannell, D.R.1    Butler, G.2    Wolfe, K.H.3
  • 37
    • 0032127258 scopus 로고    scopus 로고
    • Reductive evolution of resident genomes
    • Andersson, S. G., & Kurland, C. G. Reductive evolution of resident genomes. Trends Microbiol. 6, 263-268 (1998
    • (1998) Trends Microbiol , vol.6 , pp. 263-268
    • Andersson, S.G.1    Kurland, C.G.2
  • 38
    • 80052031934 scopus 로고    scopus 로고
    • Systems-biology approaches for predicting genomic evolution
    • Papp, B., Notebaart, R. A., & Pal, C. Systems-biology approaches for predicting genomic evolution. Nat. Rev. Genet. 12, 591-602 (2011
    • (2011) Nat. Rev. Genet , vol.12 , pp. 591-602
    • Papp, B.1    Notebaart, R.A.2    Pal, C.3
  • 39
    • 79960946712 scopus 로고    scopus 로고
    • Gene dispensability
    • Korona, R. Gene dispensability. Curr. Opin. Biotechnol. 22, 547-551 (2011
    • (2011) Curr. Opin. Biotechnol , vol.22 , pp. 547-551
    • Korona, R.1
  • 40
    • 84876808409 scopus 로고    scopus 로고
    • From essential to persistent genes: A functional approach to constructing synthetic life
    • Acevedo-Rocha, C. G., Fang, G., Schmidt, M., Ussery, D. W., & Danchin, A. From essential to persistent genes: a functional approach to constructing synthetic life. Trends Genet. 29, 273-279 (2013
    • (2013) Trends Genet , vol.29 , pp. 273-279
    • Acevedo-Rocha, C.G.1    Fang, G.2    Schmidt, M.3    Ussery, D.W.4    Danchin, A.5
  • 41
  • 42
    • 0002335754 scopus 로고
    • Dispensable genes
    • Ohno, S. Dispensable genes. Trends Genet. 1, 160-164 (1985
    • (1985) Trends Genet , vol.1 , pp. 160-164
    • Ohno, S.1
  • 43
    • 31544450286 scopus 로고    scopus 로고
    • Construction of Escherichia coli K-12 in frame, single-gene knockout mutants: The Keio collection
    • 2006. 0008
    • Baba, T., et al. Construction of Escherichia coli K-12 in frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2, 2006.0008 (2006
    • (2006) Mol. Syst. Biol , vol.2
    • Baba, T.1
  • 44
    • 42949142245 scopus 로고    scopus 로고
    • A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1
    • de Berardinis, V., et al. A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1. Mol. Syst. Biol. 4, 174 (2008
    • (2008) Mol. Syst. Biol , vol.4 , pp. 174
    • De Berardinis, V.1
  • 45
    • 0037173615 scopus 로고    scopus 로고
    • Functional profiling of the Saccharomyces cerevisiae genome
    • Giaever, G., et al. Functional profiling of the Saccharomyces cerevisiae genome. Nature 418, 387-391 (2002
    • (2002) Nature , vol.418 , pp. 387-391
    • Giaever, G.1
  • 46
    • 77953255163 scopus 로고    scopus 로고
    • Analysis of a genome-wide set of gene deletions in the fission yeast schizosaccharomyces pombe
    • Kim, D. U., et al. Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28, 617-623 (2010
    • (2010) Nat. Biotechnol , vol.28 , pp. 617-623
    • Kim, D.U.1
  • 47
    • 0037448540 scopus 로고    scopus 로고
    • Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
    • Kamath, R. S., et al. Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 421, 231-237 (2003
    • (2003) Nature , vol.421 , pp. 231-237
    • Kamath, R.S.1
  • 48
    • 15844431376 scopus 로고    scopus 로고
    • Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans
    • Sonnichsen, B., et al. Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans. Nature 434, 462-469 (2005
    • (2005) Nature , vol.434 , pp. 462-469
    • Sonnichsen, B.1
  • 49
    • 34447530305 scopus 로고    scopus 로고
    • A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila
    • Dietzl, G., et al. A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila. Nature 448, 151-156 (2007
    • (2007) Nature , vol.448 , pp. 151-156
    • Dietzl, G.1
  • 50
    • 84880562927 scopus 로고    scopus 로고
    • Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genes
    • White, J. K., et al. Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genes. Cell 154, 452-464 (2013
    • (2013) Cell , vol.154 , pp. 452-464
    • White, J.K.1
  • 51
    • 84947471998 scopus 로고    scopus 로고
    • Gene essentiality and synthetic lethality in haploid human cells
    • Blomen, V. A., et al. Gene essentiality and synthetic lethality in haploid human cells. Science 350, 1092-1096 (2015
    • (2015) Science , vol.350 , pp. 1092-1096
    • Blomen, V.A.1
  • 52
    • 84947471999 scopus 로고    scopus 로고
    • Identification and characterization of essential genes in the human genome
    • Wang, T., et al. Identification and characterization of essential genes in the human genome. Science 350, 1096-1101 (2015
    • (2015) Science , vol.350 , pp. 1096-1101
    • Wang, T.1
  • 53
    • 84947611481 scopus 로고    scopus 로고
    • Functional genomics: The genetic essence of human cells
    • Osorio, J. Functional genomics: the genetic essence of human cells. Nat. Rev. Genet. 16, 683 (2015
    • (2015) Nat. Rev. Genet , vol.16 , pp. 683
    • Osorio, J.1
  • 54
    • 33748352373 scopus 로고    scopus 로고
    • Multiple knockout analysis of genetic robustness in the yeast metabolic network
    • Deutscher, D., Meilijson, I., Kupiec, M., & Ruppin, E. Multiple knockout analysis of genetic robustness in the yeast metabolic network. Nat. Genet. 38, 993-998 (2006
    • (2006) Nat. Genet , vol.38 , pp. 993-998
    • Deutscher, D.1    Meilijson, I.2    Kupiec, M.3    Ruppin, E.4
  • 55
    • 84937395582 scopus 로고    scopus 로고
    • Pervasive robustness in biological systems
    • Felix, M. A., & Barkoulas, M. Pervasive robustness in biological systems. Nat. Rev. Genet. 16, 483-496 (2015
    • (2015) Nat. Rev. Genet , vol.16 , pp. 483-496
    • Felix, M.A.1    Barkoulas, M.2
  • 56
    • 1342286828 scopus 로고    scopus 로고
    • Animal deoxyribonucleoside kinases: Forward and retrograde evolution of their substrate specificity
    • Piskur, J., Sandrini, M. P., Knecht, W., & Munch-Petersen, B. Animal deoxyribonucleoside kinases: forward and retrograde evolution of their substrate specificity. FEBS Lett. 560, 3-6 (2004
    • (2004) FEBS Lett , vol.560 , pp. 3-6
    • Piskur, J.1    Sandrini, M.P.2    Knecht, W.3    Munch-Petersen, B.4
  • 57
    • 14344263352 scopus 로고    scopus 로고
    • Distributed robustness versus redundancy as causes of mutational robustness
    • Wagner, A. Distributed robustness versus redundancy as causes of mutational robustness. BioEssays 27, 176-188 (2005
    • (2005) Bio Essays , vol.27 , pp. 176-188
    • Wagner, A.1
  • 58
    • 2942624207 scopus 로고    scopus 로고
    • Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast
    • Papp, B., Pal, C., & Hurst, L. D. Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast. Nature 429, 661-664 (2004
    • (2004) Nature , vol.429 , pp. 661-664
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 59
    • 25444467580 scopus 로고    scopus 로고
    • Large-scale 13C flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast
    • Blank, L. M., Kuepfer, L., & Sauer, U. Large-scale 13C flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast. Genome Biol. 6, R49 (2005
    • (2005) Genome Biol , vol.6 , pp. R49
    • Blank, L.M.1    Kuepfer, L.2    Sauer, U.3
  • 60
    • 0347033256 scopus 로고    scopus 로고
    • Role of duplicate genes in genetic robustness against null mutations
    • Gu, Z., et al. Role of duplicate genes in genetic robustness against null mutations. Nature 421, 63-66 (2003
    • (2003) Nature , vol.421 , pp. 63-66
    • Gu, Z.1
  • 61
    • 33947617347 scopus 로고    scopus 로고
    • Backup without redundancy: Genetic interactions reveal the cost of duplicate gene loss
    • Ihmels, J., Collins, S. R., Schuldiner, M., Krogan, N. J., & Weissman, J. S. Backup without redundancy: genetic interactions reveal the cost of duplicate gene loss. Mol. Syst. Biol. 3, 86 (2007
    • (2007) Mol. Syst. Biol , vol.3 , pp. 86
    • Ihmels, J.1    Collins, S.R.2    Schuldiner, M.3    Krogan, N.J.4    Weissman, J.S.5
  • 62
    • 78649688381 scopus 로고    scopus 로고
    • The cellular robustness by genetic redundancy in budding yeast
    • Li, J., Yuan, Z., & Zhang, Z. The cellular robustness by genetic redundancy in budding yeast. PLoS Genet. 6, e1001187 (2010
    • (2010) Plos Genet , vol.6 , pp. e1001187
    • Li, J.1    Yuan, Z.2    Zhang, Z.3
  • 63
    • 42649118786 scopus 로고    scopus 로고
    • Exposing the fitness contribution of duplicated genes
    • DeLuna, A., et al. Exposing the fitness contribution of duplicated genes. Nat. Genet. 40, 676-681 (2008
    • (2008) Nat. Genet , vol.40 , pp. 676-681
    • DeLuna, A.1
  • 64
    • 34249041230 scopus 로고    scopus 로고
    • Exploring genetic interactions and networks with yeast
    • Boone, C., Bussey, H., & Andrews, B. J. Exploring genetic interactions and networks with yeast. Nat. Rev. Genet. 8, 437-449 (2007
    • (2007) Nat. Rev. Genet , vol.8 , pp. 437-449
    • Boone, C.1    Bussey, H.2    Andrews, B.J.3
  • 65
    • 84949192205 scopus 로고    scopus 로고
    • Gene essentiality is a quantitative property linked to cellular evolvability
    • Liu, G., et al. Gene essentiality is a quantitative property linked to cellular evolvability. Cell 163, 1388-1399 (2015
    • (2015) Cell , vol.163 , pp. 1388-1399
    • Liu, G.1
  • 66
    • 78649705725 scopus 로고    scopus 로고
    • Quantitative analysis of fitness and genetic interactions in yeast on a genome scale
    • Baryshnikova, A., et al. Quantitative analysis of fitness and genetic interactions in yeast on a genome scale. Nat. Methods 7, 1017-1024 (2010
    • (2010) Nat. Methods , vol.7 , pp. 1017-1024
    • Baryshnikova, A.1
  • 67
    • 75649111192 scopus 로고    scopus 로고
    • The genetic landscape of a cell
    • Costanzo, M., et al. The genetic landscape of a cell. Science 327, 425-431 (2010
    • (2010) Science , vol.327 , pp. 425-431
    • Costanzo, M.1
  • 68
    • 67149129951 scopus 로고    scopus 로고
    • Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes
    • Cañestro, C., Catchen, J. M., Rodríguez-Marí, A., Yokoi, H., & Postlethwait, J. H. Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes. PLoS Genet. 5, e1000496 (2009
    • (2009) Plos Genet , vol.5 , pp. e1000496
    • Cañestro, C.1    Catchen, J.M.2    Rodríguez-Marí, A.3    Yokoi, H.4    Postlethwait, J.H.5
  • 69
    • 0034917298 scopus 로고    scopus 로고
    • Consequences of hox gene duplication in the vertebrates: An investigation of the zebrafish hox paralogue group 1 genes
    • McClintock, J. M., Carlson, R., Mann, D. M., & Prince, V. E. Consequences of Hox gene duplication in the vertebrates: an investigation of the zebrafish Hox paralogue group 1 genes. Development 128, 2471-2484 (2001
    • (2001) Development , vol.128 , pp. 2471-2484
    • McClintock, J.M.1    Carlson, R.2    Mann, D.M.3    Prince, V.E.4
  • 70
    • 34548820692 scopus 로고    scopus 로고
    • Evolution of the vertebrate twist family and synfunctionalization: A mechanism for differential gene loss through merging of expression domains
    • Gitelman, I. Evolution of the vertebrate twist family and synfunctionalization: a mechanism for differential gene loss through merging of expression domains. Mol. Biol. Evol. 24, 1912-1925 (2007
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1912-1925
    • Gitelman, I.1
  • 71
    • 33644557410 scopus 로고    scopus 로고
    • Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals
    • Danchin, E. G., Gouret, P., & Pontarotti, P. Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals. BMC Evol. Biol. 6, 5 (2006
    • (2006) BMC Evol. Biol , vol.6 , pp. 5
    • Danchin, E.G.1    Gouret, P.2    Pontarotti, P.3
  • 72
    • 84947071589 scopus 로고    scopus 로고
    • Mechanisms of mutational robustness in transcriptional regulation
    • Payne, J. L., & Wagner, A. Mechanisms of mutational robustness in transcriptional regulation. Front. Genet. 6, 322 (2015
    • (2015) Front. Genet , vol.6 , pp. 322
    • Payne, J.L.1    Wagner, A.2
  • 73
    • 42349100173 scopus 로고    scopus 로고
    • The chemical genomic portrait of yeast: Uncovering a phenotype for all genes
    • Hillenmeyer, M. E., et al. The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science 320, 362-365 (2008
    • (2008) Science , vol.320 , pp. 362-365
    • Hillenmeyer, M.E.1
  • 74
    • 46449094817 scopus 로고    scopus 로고
    • The extensive and condition-dependent nature of epistasis among whole-genome duplicates in yeast
    • Musso, G., et al. The extensive and condition-dependent nature of epistasis among whole-genome duplicates in yeast. Genome Res. 18, 1092-1099 (2008
    • (2008) Genome Res , vol.18 , pp. 1092-1099
    • Musso, G.1
  • 75
    • 63449086872 scopus 로고    scopus 로고
    • The complex relationship of gene duplication and essentiality
    • Makino, T., Hokamp, K., & McLysaght, A. The complex relationship of gene duplication and essentiality. Trends Genet. 25, 152-155 (2009
    • (2009) Trends Genet , vol.25 , pp. 152-155
    • Makino, T.1    Hokamp, K.2    McLysaght, A.3
  • 76
    • 34447637417 scopus 로고    scopus 로고
    • Mouse duplicate genes are as essential as singletons
    • Liao, B. Y., & Zhang, J. Mouse duplicate genes are as essential as singletons. Trends Genet. 23, 378-381 (2007
    • (2007) Trends Genet , vol.23 , pp. 378-381
    • Liao, B.Y.1    Zhang, J.2
  • 77
    • 0034633626 scopus 로고    scopus 로고
    • Lineage-specific loss and divergence of functionally linked genes in eukaryotes
    • Aravind, L., Watanabe, H., Lipman, D. J., & Koonin, E. V. Lineage-specific loss and divergence of functionally linked genes in eukaryotes. Proc. Natl Acad. Sci. USA 97, 11319-11324 (2000
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 11319-11324
    • Aravind, L.1    Watanabe, H.2    Lipman, D.J.3    Koonin, E.V.4
  • 78
    • 3142732892 scopus 로고    scopus 로고
    • Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
    • Blanc, G., & Wolfe, K. H. Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16, 1679-1691 (2004
    • (2004) Plant Cell , vol.16 , pp. 1679-1691
    • Blanc, G.1    Wolfe, K.H.2
  • 79
    • 17244368487 scopus 로고    scopus 로고
    • Modeling gene and genome duplications in eukaryotes
    • Maere, S., et al. Modeling gene and genome duplications in eukaryotes. Proc. Natl Acad. Sci. USA 102, 5454-5459 (2005
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 5454-5459
    • Maere, S.1
  • 80
    • 4444363053 scopus 로고    scopus 로고
    • Genome duplication led to highly selective expansion of the arabidopsis thaliana proteome
    • Seoighe, C., & Gehring, C. Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome. Trends Genet. 20, 461-464 (2004
    • (2004) Trends Genet , vol.20 , pp. 461-464
    • Seoighe, C.1    Gehring, C.2
  • 81
    • 84901283924 scopus 로고    scopus 로고
    • The dynamics of functional classes of plant genes in rediploidized ancient polyploids
    • Chen, E. C., et al. The dynamics of functional classes of plant genes in rediploidized ancient polyploids. BMC Bioinformatics 14 (Suppl. 15), S19 (2013
    • (2013) BMC Bioinformatics , vol.14 , Issue.SUPPL15 , pp. S19
    • Chen, E.C.1
  • 82
    • 33745067419 scopus 로고    scopus 로고
    • The gain and loss of genes during 600 million years of vertebrate evolution
    • Blomme, T., et al. The gain and loss of genes during 600 million years of vertebrate evolution. Genome Biol. 7, R43 (2006
    • (2006) Genome Biol , vol.7 , pp. R43
    • Blomme, T.1
  • 84
    • 84866037420 scopus 로고    scopus 로고
    • Evolution of genes involved in gamete interaction: Evidence for positive selection, duplications and losses in vertebrates
    • Meslin, C., et al. Evolution of genes involved in gamete interaction: evidence for positive selection, duplications and losses in vertebrates. PLoS ONE 7, e44548 (2012
    • (2012) Plos One , vol.7 , pp. e44548
    • Meslin, C.1
  • 85
    • 16444381885 scopus 로고    scopus 로고
    • A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
    • Koonin, E. V., et al. A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes. Genome Biol. 5, R7 (2004
    • (2004) Genome Biol , vol.5 , pp. R7
    • Koonin, E.V.1
  • 86
    • 84902668660 scopus 로고    scopus 로고
    • Recurrent gene loss correlates with the evolution of stomach phenotypes in gnathostome history
    • Castro, L. F., et al. Recurrent gene loss correlates with the evolution of stomach phenotypes in gnathostome history. Proc. Biol. Sci. 281, 20132669 (2014
    • (2014) Proc. Biol. Sci , vol.281 , pp. 20132669
    • Castro, L.F.1
  • 87
    • 47149086612 scopus 로고    scopus 로고
    • Loss of genes implicated in gastric function during platypus evolution
    • Ordonez, G. R., et al. Loss of genes implicated in gastric function during platypus evolution. Genome Biol. 9, R81 (2008
    • (2008) Genome Biol , vol.9 , pp. R81
    • Ordonez, G.R.1
  • 88
    • 52149104945 scopus 로고    scopus 로고
    • Hen's teeth with enamel cap: From dream to impossibility
    • Sire, J. Y., Delgado, S. C., & Girondot, M. Hen's teeth with enamel cap: from dream to impossibility. BMC Evol. Biol. 8, 246 (2008
    • (2008) BMC Evol. Biol , vol.8 , pp. 246
    • Sire, J.Y.1    Delgado, S.C.2    Girondot, M.3
  • 89
    • 77649141259 scopus 로고    scopus 로고
    • Genome sequence of the pea aphid Acyrthosiphon pisum
    • International Aphid Genomics Consortium
    • International Aphid Genomics Consortium. Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biol. 8, e1000313 (2010
    • (2010) Plos Biol , vol.8 , pp. e1000313
  • 90
    • 33750173564 scopus 로고    scopus 로고
    • Many gene and domain families have convergent fates following independent whole-genome duplication events in arabidopsis, oryza, saccharomyces and tetraodon
    • Paterson, A. H., et al. Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon. Trends Genet. 22, 597-602 (2006
    • (2006) Trends Genet , vol.22 , pp. 597-602
    • Paterson, A.H.1
  • 91
    • 67651039811 scopus 로고    scopus 로고
    • Bias in plant gene content following different sorts of duplication: Tandem, whole-genome, segmental, or by transposition
    • Freeling, M. Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition. Annu. Rev. Plant Biol. 60, 433-453 (2009
    • (2009) Annu. Rev. Plant Biol , vol.60 , pp. 433-453
    • Freeling, M.1
  • 92
    • 55749104408 scopus 로고    scopus 로고
    • Gene dosage and gene duplicability
    • Qian, W., & Zhang, J. Gene dosage and gene duplicability. Genetics 179, 2319-2324 (2008
    • (2008) Genetics , vol.179 , pp. 2319-2324
    • Qian, W.1    Zhang, J.2
  • 93
    • 84901818848 scopus 로고    scopus 로고
    • Dosage duplication, and diploidization: Clarifying the interplay of multiple models for duplicate gene evolution over time
    • Conant, G. C., Birchler, J. A., & Pires, J. C. Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time. Curr. Opin. Plant Biol. 19, 91-98 (2014
    • (2014) Curr. Opin. Plant Biol , vol.19 , pp. 91-98
    • Conant, G.C.1    Birchler, J.A.2    Pires, J.C.3
  • 94
    • 84891910353 scopus 로고    scopus 로고
    • Ohnologs are overrepresented in pathogenic copy number mutations
    • McLysaght, A., et al. Ohnologs are overrepresented in pathogenic copy number mutations. Proc. Natl Acad. Sci. USA 111, 361-366 (2014
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 361-366
    • McLysaght, A.1
  • 95
    • 84875248174 scopus 로고    scopus 로고
    • Impact of gene gains, losses and duplication modes on the origin and diversification of vertebrates
    • Cañestro, C., Albalat, R., Irimia, M., & Garcia-Fernandez, J. Impact of gene gains, losses and duplication modes on the origin and diversification of vertebrates. Semin. Cell Dev. Biol. 24, 83-94 (2013
    • (2013) Semin. Cell Dev. Biol , vol.24 , pp. 83-94
    • Cañestro, C.1    Albalat, R.2    Irimia, M.3    Garcia-Fernandez, J.4
  • 96
    • 24644486450 scopus 로고    scopus 로고
    • Do disparate mechanisms of duplication add similar genes to the genome?
    • Davis, J. C., & Petrov, D. A. Do disparate mechanisms of duplication add similar genes to the genome? Trends Genet. 21, 548-551 (2005
    • (2005) Trends Genet , vol.21 , pp. 548-551
    • Davis, J.C.1    Petrov, D.A.2
  • 97
    • 34347209089 scopus 로고    scopus 로고
    • Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication
    • Scannell, D. R., et al. Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication. Proc. Natl Acad. Sci. USA 104, 8397-8402 (2007
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 8397-8402
    • Scannell, D.R.1
  • 98
    • 1542338594 scopus 로고    scopus 로고
    • Genomic duplication, fractionation and the origin of regulatory novelty
    • Langham, R. J., et al. Genomic duplication, fractionation and the origin of regulatory novelty. Genetics 166, 935-945 (2004
    • (2004) Genetics , vol.166 , pp. 935-945
    • Langham, R.J.1
  • 99
    • 33745617700 scopus 로고    scopus 로고
    • Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
    • Thomas, B. C., Pedersen, B., & Freeling, M. Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. Genome Res. 16, 934-946 (2006
    • (2006) Genome Res , vol.16 , pp. 934-946
    • Thomas, B.C.1    Pedersen, B.2    Freeling, M.3
  • 100
    • 84870517015 scopus 로고    scopus 로고
    • Positionally biased gene loss after whole genome duplication: Evidence from human, yeast, and plant
    • Makino, T., & McLysaght, A. Positionally biased gene loss after whole genome duplication: evidence from human, yeast, and plant. Genome Res. 22, 2427-2435 (2012
    • (2012) Genome Res , vol.22 , pp. 2427-2435
    • Makino, T.1    McLysaght, A.2
  • 102
    • 84901467202 scopus 로고    scopus 로고
    • The brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes
    • Liu, S., et al. The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. Nat. Commun. 5, 3930 (2014
    • (2014) Nat. Commun , vol.5 , pp. 3930
    • Liu, S.1
  • 103
    • 79952744855 scopus 로고    scopus 로고
    • Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
    • Schnable, J. C., Springer, N. M., & Freeling, M. Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc. Natl Acad. Sci. USA 108, 4069-4074 (2011
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 4069-4074
    • Schnable, J.C.1    Springer, N.M.2    Freeling, M.3
  • 104
    • 33847065899 scopus 로고    scopus 로고
    • Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor
    • Sémon, M., & Wolfe, K. H. Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor. Trends Genet. 23, 108-112 (2007
    • (2007) Trends Genet , vol.23 , pp. 108-112
    • Sémon, M.1    Wolfe, K.H.2
  • 105
    • 33645023614 scopus 로고    scopus 로고
    • Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
    • Scannell, D. R., Byrne, K. P., Gordon, J. L., Wong, S., & Wolfe, K. H. Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 440, 341-345 (2006
    • (2006) Nature , vol.440 , pp. 341-345
    • Scannell, D.R.1    Byrne, K.P.2    Gordon, J.L.3    Wong, S.4    Wolfe, K.H.5
  • 106
    • 78650576181 scopus 로고    scopus 로고
    • Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes
    • Mizuta, Y., Harushima, Y., & Kurata, N. Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes. Proc. Natl Acad. Sci. USA 107, 20417-20422 (2010
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 20417-20422
    • Mizuta, Y.1    Harushima, Y.2    Kurata, N.3
  • 108
    • 68149176813 scopus 로고    scopus 로고
    • Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates
    • Kassahn, K. S., Dang, V. T., Wilkins, S. J., Perkins, A. C., & Ragan, M. A. Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates. Genome Res. 19, 1404-1418 (2009
    • (2009) Genome Res , vol.19 , pp. 1404-1418
    • Kassahn, K.S.1    Dang, V.T.2    Wilkins, S.J.3    Perkins, A.C.4    Ragan, M.A.5
  • 109
    • 84929022977 scopus 로고    scopus 로고
    • Gene loss from a plant sex chromosome system
    • Bergero, R., Qiu, S., & Charlesworth, D. Gene loss from a plant sex chromosome system. Curr. Biol. 25, 1234-1240 (2015
    • (2015) Curr. Biol , vol.25 , pp. 1234-1240
    • Bergero, R.1    Qiu, S.2    Charlesworth, D.3
  • 110
    • 84899484057 scopus 로고    scopus 로고
    • Origins and functional evolution of y chromosomes across mammals
    • Cortez, D., et al. Origins and functional evolution of Y chromosomes across mammals. Nature 508, 488-493 (2014
    • (2014) Nature , vol.508 , pp. 488-493
    • Cortez, D.1
  • 111
    • 84899473294 scopus 로고    scopus 로고
    • Mammalian y chromosomes retain widely expressed dosage-sensitive regulators
    • Bellott, D. W., et al. Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators. Nature 508, 494-499 (2014
    • (2014) Nature , vol.508 , pp. 494-499
    • Bellott, D.W.1
  • 112
    • 84862777341 scopus 로고    scopus 로고
    • Strict evolutionary conservation followed rapid gene loss on human and rhesus y chromosomes
    • Hughes, J. F., et al. Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes. Nature 483, 82-86 (2012
    • (2012) Nature , vol.483 , pp. 82-86
    • Hughes, J.F.1
  • 113
    • 0033360995 scopus 로고    scopus 로고
    • When less is more: Gene loss as an engine of evolutionary change
    • Olson, M. V. When less is more: gene loss as an engine of evolutionary change. Am. J. Hum. Genet. 64, 18-23 (1999
    • (1999) Am. J. Hum. Genet , vol.64 , pp. 18-23
    • Olson, M.V.1
  • 114
    • 0037224073 scopus 로고    scopus 로고
    • Sequencing the chimpanzee genome: Insights into human evolution and disease
    • Olson, M. V., & Varki, A. Sequencing the chimpanzee genome: insights into human evolution and disease. Nat. Rev. Genet. 4, 20-28 (2003
    • (2003) Nat. Rev. Genet , vol.4 , pp. 20-28
    • Olson, M.V.1    Varki, A.2
  • 115
    • 84880787194 scopus 로고    scopus 로고
    • Bacterial adaptation through loss of function
    • Hottes, A. K., et al. Bacterial adaptation through loss of function. PLoS Genet. 9, e1003617 (2013
    • (2013) Plos Genet , vol.9 , pp. e1003617
    • Hottes, A.K.1
  • 116
    • 0033134861 scopus 로고    scopus 로고
    • Pathoadaptive mutations: Gene loss and variation in bacterial pathogens
    • Sokurenko, E. V., Hasty, D. L., & Dykhuizen, D. E. Pathoadaptive mutations: gene loss and variation in bacterial pathogens. Trends Microbiol. 7, 191-195 (1999
    • (1999) Trends Microbiol , vol.7 , pp. 191-195
    • Sokurenko, E.V.1    Hasty, D.L.2    Dykhuizen, D.E.3
  • 117
    • 58449128865 scopus 로고    scopus 로고
    • Loss of allergen 1 confers a hypervirulent phenotype that resembles mucoid switch variants of cryptococcus neoformans
    • Jain, N., et al. Loss of allergen 1 confers a hypervirulent phenotype that resembles mucoid switch variants of Cryptococcus neoformans. Infect. Immun. 77, 128-140 (2009
    • (2009) Infect. Immun , vol.77 , pp. 128-140
    • Jain, N.1
  • 118
    • 0032584169 scopus 로고    scopus 로고
    • Black holes and bacterial pathogenicity: A large genomic deletion that enhances the virulence of shigella spp and enteroinvasive Escherichia coli
    • Maurelli, A. T., Fernandez, R. E., Bloch, C. A., & Rode, C. K., & Fasano, A. Black holes and bacterial pathogenicity: a large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli. Proc. Natl Acad. Sci. USA 95, 3943-3948 (1998
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 3943-3948
    • Maurelli, A.T.1    Fernandez, R.E.2    Bloch, C.A.3    Rode, C.K.4    Fasano, A.5
  • 119
    • 3042647600 scopus 로고    scopus 로고
    • Contribution of gene loss to the pathogenic evolution of Burkholderia pseudomallei and Burkholderia mallei
    • Moore, R. A., et al. Contribution of gene loss to the pathogenic evolution of Burkholderia pseudomallei and Burkholderia mallei. Infect. Immun. 72, 4172-4187 (2004
    • (2004) Infect. Immun , vol.72 , pp. 4172-4187
    • Moore, R.A.1
  • 120
    • 0031976051 scopus 로고    scopus 로고
    • Microbial pathogenesis in cystic fibrosis: Pulmonary clearance of mucoid Pseudomonas aeruginosa and inflammation in a mouse model of repeated respiratory challenge
    • Yu, H., Hanes, M., Chrisp, C. E., Boucher, J. C., & Deretic, V. Microbial pathogenesis in cystic fibrosis: pulmonary clearance of mucoid Pseudomonas aeruginosa and inflammation in a mouse model of repeated respiratory challenge. Infect. Immun. 66, 280-288 (1998
    • (1998) Infect. Immun , vol.66 , pp. 280-288
    • Yu, H.1    Hanes, M.2    Chrisp, C.E.3    Boucher, J.C.4    Deretic, V.5
  • 121
    • 17844385918 scopus 로고    scopus 로고
    • Nicotinic acid limitation regulates silencing of Candida adhesins during UTI
    • Domergue, R., et al. Nicotinic acid limitation regulates silencing of Candida adhesins during UTI. Science 308, 866-870 (2005
    • (2005) Science , vol.308 , pp. 866-870
    • Domergue, R.1
  • 122
    • 77952332278 scopus 로고    scopus 로고
    • Incipient balancing selection through adaptive loss of aquaporins in natural saccharomyces cerevisiae populations
    • Will, J. L., et al. Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations. PLoS Genet. 6, e1000893 (2010
    • (2010) Plos Genet , vol.6 , pp. e1000893
    • Will, J.L.1
  • 123
    • 84949650306 scopus 로고    scopus 로고
    • And transcriptomic analyses of the Chinese Maotai-flavored liquor yeast MT1 revealed its unique multi-carbon co utilization
    • Lu, X., Wu, Q., Zhang, Y., & Xu, Y. Genomic and transcriptomic analyses of the Chinese Maotai-flavored liquor yeast MT1 revealed its unique multi-carbon co utilization. BMC Genomics 16, 1064 (2015
    • (2015) BMC Genomics , vol.16 , pp. 1064
    • Lu, X.1    Wu, Q.2    Zhang, Y.3    Genomic, X.Y.4
  • 124
    • 34247845270 scopus 로고    scopus 로고
    • Single gene-mediated shift in pollinator attraction in Petunia
    • Hoballah, M. E., et al. Single gene-mediated shift in pollinator attraction in Petunia. Plant Cell 19, 779-790 (2007
    • (2007) Plant Cell , vol.19 , pp. 779-790
    • Hoballah, M.E.1
  • 125
    • 1942467024 scopus 로고    scopus 로고
    • Genetic changes associated with floral adaptation restrict future evolutionary potential
    • Zufall, R. A., & Rausher, M. D. Genetic changes associated with floral adaptation restrict future evolutionary potential. Nature 428, 847-850 (2004
    • (2004) Nature , vol.428 , pp. 847-850
    • Zufall, R.A.1    Rausher, M.D.2
  • 127
    • 0345168212 scopus 로고    scopus 로고
    • Ecological adaptation during incipient speciation revealed by precise gene replacement
    • Greenberg, A. J., Moran, J. R., Coyne, J. A., & Wu, C. I. Ecological adaptation during incipient speciation revealed by precise gene replacement. Science 302, 1754-1757 (2003
    • (2003) Science , vol.302 , pp. 1754-1757
    • Greenberg, A.J.1    Moran, J.R.2    Coyne, J.A.3    Wu, C.I.4
  • 128
    • 37249003202 scopus 로고    scopus 로고
    • Five Drosophila genomes reveal nonneutral evolution and the signature of host specialization in the chemoreceptor superfamily
    • McBride, C. S., Arguello, J. R., & O'Meara, B. C. Five Drosophila genomes reveal nonneutral evolution and the signature of host specialization in the chemoreceptor superfamily. Genetics 177, 1395-1416 (2007
    • (2007) Genetics , vol.177 , pp. 1395-1416
    • McBride, C.S.1    Arguello, J.R.2    O'Meara, B.C.3
  • 129
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • Clark, A. G., et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450, 203-218 (2007
    • (2007) Nature , vol.450 , pp. 203-218
    • Clark, A.G.1
  • 130
    • 84924338095 scopus 로고    scopus 로고
    • Evolution of herbivory in Drosophilidae linked to loss of behaviors, antennal responses, odorant receptors, and ancestral diet
    • Goldman-Huertas, B., et al. Evolution of herbivory in Drosophilidae linked to loss of behaviors, antennal responses, odorant receptors, and ancestral diet. Proc. Natl Acad. Sci. USA 112, 3026-3031 (2015
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 3026-3031
    • Goldman-Huertas, B.1
  • 131
    • 0001633495 scopus 로고    scopus 로고
    • Genetic restriction of HIV 1 infection and progression to AIDS by a deletion allele of the CKR5 structural gene
    • Dean, M., et al. Genetic restriction of HIV 1 infection and progression to AIDS by a deletion allele of the CKR5 structural gene. Science 273, 1856-1862 (1996
    • (1996) Science , vol.273 , pp. 1856-1862
    • Dean, M.1
  • 132
    • 0029001881 scopus 로고
    • Disruption of a gata motif in the duffy gene promoter abolishes erythroid gene expression in duffy-negative individuals
    • Tournamille, C., Colin, Y., Cartron, J. P., & Le Van Kim, C. Disruption of a GATA motif in the Duffy gene promoter abolishes erythroid gene expression in Duffy-negative individuals. Nat. Genet. 10, 224-228 (1995
    • (1995) Nat. Genet , vol.10 , pp. 224-228
    • Tournamille, C.1    Colin, Y.2    Cartron, J.P.3    Le Van Kim, C.4
  • 133
    • 79953794193 scopus 로고    scopus 로고
    • The global distribution of the duffy blood group
    • Howes, R. E., et al. The global distribution of the Duffy blood group. Nat. Commun. 2, 266 (2011
    • (2011) Nat. Commun , vol.2 , pp. 266
    • Howes, R.E.1
  • 134
    • 84903715719 scopus 로고    scopus 로고
    • Natural selection for the duffy-null allele in the recently admixed people of Madagascar
    • Hodgson, J. A., et al. Natural selection for the Duffy-null allele in the recently admixed people of Madagascar. Proc. Biol. Sci. 281, 20140930 (2014
    • (2014) Proc. Biol. Sci , vol.281 , pp. 20140930
    • Hodgson, J.A.1
  • 135
    • 27844602105 scopus 로고    scopus 로고
    • The geographic spread of the CCR5 δ32 HIV-resistance allele
    • Novembre, J., Galvani, A. P., & Slatkin, M. The geographic spread of the CCR5 δ32 HIV-resistance allele. PLoS Biol. 3, e339 (2005
    • (2005) Plos Biol , vol.3 , pp. e339
    • Novembre, J.1    Galvani, A.P.2    Slatkin, M.3
  • 136
    • 21244484209 scopus 로고    scopus 로고
    • The evolutionary history of the CCR5 δ32 HIV-resistance mutation
    • Galvani, A. P., & Novembre, J. The evolutionary history of the CCR5 δ32 HIV-resistance mutation. Microbes Infect. 7, 302-309 (2005
    • (2005) Microbes Infect , vol.7 , pp. 302-309
    • Galvani, A.P.1    Novembre, J.2
  • 137
    • 67649515047 scopus 로고    scopus 로고
    • Controversial role of smallpox on historical positive selection at the CCR5 chemokine gene (CCR5 δ32
    • Saxena, S. K. Controversial role of smallpox on historical positive selection at the CCR5 chemokine gene (CCR5 δ32). J. Infect. Dev. Ctries 3, 324-326 (2009
    • (2009) J. Infect. Dev. Ctries , vol.3 , pp. 324-326
    • Saxena, S.K.1
  • 138
    • 80053050662 scopus 로고    scopus 로고
    • Population genetics of malaria resistance in humans
    • Hedrick, P. W. Population genetics of malaria resistance in humans. Heredity 107, 283-304 (2011
    • (2011) Heredity , vol.107 , pp. 283-304
    • Hedrick, P.W.1
  • 139
    • 12144288568 scopus 로고    scopus 로고
    • Myosin gene mutation correlates with anatomical changes in the human lineage
    • Stedman, H. H., et al. Myosin gene mutation correlates with anatomical changes in the human lineage. Nature 428, 415-418 (2004
    • (2004) Nature , vol.428 , pp. 415-418
    • Stedman, H.H.1
  • 140
    • 0037015010 scopus 로고    scopus 로고
    • Inactivation of CMP N acetylneuraminic acid hydroxylase occurred prior to brain expansion during human evolution
    • Chou, H. H., et al. Inactivation of CMP N acetylneuraminic acid hydroxylase occurred prior to brain expansion during human evolution. Proc. Natl Acad. Sci. USA 99, 11736-11741 (2002
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 11736-11741
    • Chou, H.H.1
  • 141
    • 33644980516 scopus 로고    scopus 로고
    • Gene losses during human origins
    • Wang, X., Grus, W. E., & Zhang, J. Gene losses during human origins. PLoS Biol. 4, e52 (2006
    • (2006) Plos Biol , vol.4 , pp. e52
    • Wang, X.1    Grus, W.E.2    Zhang, J.3
  • 142
    • 84888213196 scopus 로고    scopus 로고
    • Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment
    • Kvitek, D. J., & Sherlock, G. Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment. PLoS Genet. 9, e1003972 (2013
    • (2013) Plos Genet , vol.9 , pp. e1003972
    • Kvitek, D.J.1    Sherlock, G.2
  • 143
    • 84874535714 scopus 로고    scopus 로고
    • Parallel evolutionary dynamics of adaptive diversification in Escherichia coli
    • Herron, M. D., & Doebeli, M. Parallel evolutionary dynamics of adaptive diversification in Escherichia coli. PLoS Biol. 11, e1001490 (2013
    • (2013) Plos Biol , vol.11 , pp. e1001490
    • Herron, M.D.1    Doebeli, M.2
  • 144
    • 0035046481 scopus 로고    scopus 로고
    • Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B
    • Cooper, V. S., Schneider, D., Blot, M., & Lenski, R. E. Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B. J. Bacteriol. 183, 2834-2841 (2001
    • (2001) J. Bacteriol , vol.183 , pp. 2834-2841
    • Cooper, V.S.1    Schneider, D.2    Blot, M.3    Lenski, R.E.4
  • 145
    • 0032544068 scopus 로고    scopus 로고
    • Body pool and synthesis of ascorbic acid in adult sea lamprey (petromyzon marinus): An agnathan fish with gulonolactone oxidase activity
    • Moreau, R., & Dabrowski, K. Body pool and synthesis of ascorbic acid in adult sea lamprey (Petromyzon marinus): an agnathan fish with gulonolactone oxidase activity. Proc. Natl Acad. Sci. USA 95, 10279-10282 (1998
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 10279-10282
    • Moreau, R.1    Dabrowski, K.2
  • 146
    • 79961096432 scopus 로고    scopus 로고
    • The genetics of Vitamin C loss in vertebrates
    • Drouin, G., Godin, J. R., & Page, B. The genetics of vitamin C loss in vertebrates. Curr. Genom. 12, 371-378 (2011
    • (2011) Curr. Genom , vol.12 , pp. 371-378
    • Drouin, G.1    Godin, J.R.2    Page, B.3
  • 148
    • 29444454335 scopus 로고    scopus 로고
    • Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism
    • Protas, M. E., et al. Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism. Nat. Genet. 38, 107-111 (2006
    • (2006) Nat. Genet , vol.38 , pp. 107-111
    • Protas, M.E.1
  • 149
    • 29144490032 scopus 로고    scopus 로고
    • Regressive evolution of an eye pigment gene in independently evolved eyeless subterranean diving beetles
    • Leys, R., Cooper, S. J., Strecker, U., & Wilkens, H. Regressive evolution of an eye pigment gene in independently evolved eyeless subterranean diving beetles. Biol. Lett. 1, 496-499 (2005
    • (2005) Biol. Lett , vol.1 , pp. 496-499
    • Leys, R.1    Cooper, S.J.2    Strecker, U.3    Wilkens, H.4
  • 150
    • 79955040565 scopus 로고    scopus 로고
    • Genetic basis of eye and pigment loss in the cave crustacean asellus aquaticus
    • Protas, M. E., Trontelj, P., & Patel, N. H. Genetic basis of eye and pigment loss in the cave crustacean, Asellus aquaticus. Proc. Natl Acad. Sci. USA 108, 5702-5707 (2011
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 5702-5707
    • Protas, M.E.1    Trontelj, P.2    Patel, N.H.3
  • 151
    • 84912567300 scopus 로고    scopus 로고
    • The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima
    • Chipman, A. D., et al. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. PLoS Biol. 12, e1002005 (2014
    • (2014) Plos Biol , vol.12 , pp. e1002005
    • Chipman, A.D.1
  • 152
    • 67049100269 scopus 로고    scopus 로고
    • The evolution of color vision in nocturnal mammals
    • Zhao, H., et al. The evolution of color vision in nocturnal mammals. Proc. Natl Acad. Sci. USA 106, 8980-8985 (2009
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 8980-8985
    • Zhao, H.1
  • 153
    • 80855165387 scopus 로고    scopus 로고
    • Genome sequencing reveals insights into physiology and longevity of the naked mole rat
    • Kim, E. B., et al. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Nature 479, 223-227 (2011
    • (2011) Nature , vol.479 , pp. 223-227
    • Kim, E.B.1
  • 154
    • 84902520344 scopus 로고    scopus 로고
    • Eyes underground: Regression of visual protein networks in subterranean mammals
    • Emerling, C. A., & Springer, M. S. Eyes underground: regression of visual protein networks in subterranean mammals. Mol. Phylogenet Evol. 78, 260-270 (2014
    • (2014) Mol. Phylogenet Evol , vol.78 , pp. 260-270
    • Emerling, C.A.1    Springer, M.S.2
  • 155
    • 19544384334 scopus 로고    scopus 로고
    • Economy speed and size matter: Evolutionary forces driving nuclear genome miniaturization and expansion
    • Cavalier-Smith, T. Economy, speed and size matter: evolutionary forces driving nuclear genome miniaturization and expansion. Ann. Bot. 95, 147-175 (2005
    • (2005) Ann. Bot , vol.95 , pp. 147-175
    • Cavalier-Smith, T.1
  • 156
    • 68149175229 scopus 로고    scopus 로고
    • The consequences of genetic drift for bacterial genome complexity
    • Kuo, C. H., Moran, N. A., & Ochman, H. The consequences of genetic drift for bacterial genome complexity. Genome Res. 19, 1450-1454 (2009
    • (2009) Genome Res , vol.19 , pp. 1450-1454
    • Kuo, C.H.1    Moran, N.A.2    Ochman, H.3
  • 157
    • 33244455720 scopus 로고    scopus 로고
    • Inference and analysis of the relative stability of bacterial chromosomes
    • Rocha, E. P. Inference and analysis of the relative stability of bacterial chromosomes. Mol. Biol. Evol. 23, 513-522 (2006
    • (2006) Mol. Biol. Evol , vol.23 , pp. 513-522
    • Rocha, E.P.1
  • 158
    • 84970002464 scopus 로고    scopus 로고
    • Indispensability of horizontally transferred genes and its impact on bacterial genome streamlining
    • Karcagi, I., et al. Indispensability of horizontally transferred genes and its impact on bacterial genome streamlining. Mol. Biol. Evol. http: dx.doi.org/10.1093/molbev/msw009 (2016
    • (2016) Mol. Biol. Evol
    • Karcagi, I.1
  • 159
    • 65249100208 scopus 로고    scopus 로고
    • The cost of gene expression underlies a fitness trade-off in yeast
    • Lang, G. I., Murray, A. W., & Botstein, D. The cost of gene expression underlies a fitness trade-off in yeast. Proc. Natl Acad. Sci. USA 106, 5755-5760 (2009
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 5755-5760
    • Lang, G.I.1    Murray, A.W.2    Botstein, D.3
  • 160
    • 77958494747 scopus 로고    scopus 로고
    • Genes modules and the evolution of cave fish
    • Wilkens, H. Genes, modules and the evolution of cave fish. Heredity 105, 413-422 (2010
    • (2010) Heredity , vol.105 , pp. 413-422
    • Wilkens, H.1
  • 161
    • 84880000843 scopus 로고    scopus 로고
    • Evolution of an adaptive behavior and its sensory receptors promotes eye regression in blind cavefish: Response to borowsky 2013
    • Yoshizawa, M., O'Quin, K. E., & Jeffery, W. R. Evolution of an adaptive behavior and its sensory receptors promotes eye regression in blind cavefish: response to Borowsky (2013). BMC Biol. 11, 82 (2013
    • (2013) BMC Biol , vol.11 , pp. 82
    • Yoshizawa, M.1    O'Quin, K.E.2    Jeffery, W.R.3
  • 162
    • 84872435993 scopus 로고    scopus 로고
    • Trade-offs in cavefish sensory capacity
    • Gunter, H., & Meyer, A. Trade-offs in cavefish sensory capacity. BMC Biol. 11, 5 (2013
    • (2013) BMC Biol , vol.11 , pp. 5
    • Gunter, H.1    Meyer, A.2
  • 163
    • 84922321480 scopus 로고    scopus 로고
    • The cavefish genome reveals candidate genes for eye loss
    • McGaugh, S. E., et al. The cavefish genome reveals candidate genes for eye loss. Nat. Commun. 5, 5307 (2014
    • (2014) Nat. Commun , vol.5 , pp. 5307
    • McGaugh, S.E.1
  • 164
    • 77957959525 scopus 로고    scopus 로고
    • The neutral theory of molecular evolution in the genomic era
    • Nei, M., Suzuki, Y., & Nozawa, M. The neutral theory of molecular evolution in the genomic era. Annu. Rev. Genom. Hum. Genet. 11, 265-289 (2010
    • (2010) Annu. Rev. Genom. Hum. Genet , vol.11 , pp. 265-289
    • Nei, M.1    Suzuki, Y.2    Nozawa, M.3
  • 165
    • 56549087988 scopus 로고    scopus 로고
    • Neutralism and selectionism: A network-based reconciliation
    • Wagner, A. Neutralism and selectionism: a network-based reconciliation. Nat. Rev. Genet. 9, 965-974 (2008
    • (2008) Nat. Rev. Genet , vol.9 , pp. 965-974
    • Wagner, A.1
  • 166
    • 0037040394 scopus 로고    scopus 로고
    • Microbial minimalism: Genome reduction in bacterial pathogens
    • Moran, N. A. Microbial minimalism: genome reduction in bacterial pathogens. Cell 108, 583-586 (2002
    • (2002) Cell , vol.108 , pp. 583-586
    • Moran, N.A.1
  • 167
    • 23844446418 scopus 로고    scopus 로고
    • Genome streamlining in a cosmopolitan oceanic bacterium
    • Giovannoni, S. J., et al. Genome streamlining in a cosmopolitan oceanic bacterium. Science 309, 1242-1245 (2005
    • (2005) Science , vol.309 , pp. 1242-1245
    • Giovannoni, S.J.1
  • 168
    • 0035479142 scopus 로고    scopus 로고
    • Deletional bias and the evolution of bacterial genomes
    • Mira, A., Ochman, H., & Moran, N. A. Deletional bias and the evolution of bacterial genomes. Trends Genet. 17, 589-596 (2001
    • (2001) Trends Genet , vol.17 , pp. 589-596
    • Mira, A.1    Ochman, H.2    Moran, N.A.3
  • 169
    • 0345306751 scopus 로고    scopus 로고
    • The origins of genome complexity
    • Lynch, M., & Conery, J. S. The origins of genome complexity. Science 302, 1401-1404 (2003
    • (2003) Science , vol.302 , pp. 1401-1404
    • Lynch, M.1    Conery, J.S.2
  • 171
    • 84877021734 scopus 로고    scopus 로고
    • Computational workflow for analysis of gain and loss of genes in distantly related genomes
    • Ptitsyn, A., & Moroz, L. L. Computational workflow for analysis of gain and loss of genes in distantly related genomes. BMC Bioinformatics 13 (Suppl. 15), S5 (2012
    • (2012) BMC Bioinformatics , vol.13 , Issue.SUPPL15 , pp. S5
    • Ptitsyn, A.1    Moroz, L.L.2
  • 172
    • 84862499153 scopus 로고    scopus 로고
    • Gladx an automated approach to analyze the lineage-specific loss and pseudogenization of genes
    • Dainat, J., Paganini, J., Pontarotti, P., & Gouret, P. GLADX: an automated approach to analyze the lineage-specific loss and pseudogenization of genes. PLoS ONE 7, e38792 (2012
    • (2012) Plos One , vol.7 , pp. e38792
    • Dainat, J.1    Paganini, J.2    Pontarotti, P.3    Gouret, P.4
  • 173
    • 33748795802 scopus 로고    scopus 로고
    • Biological applications of the theory of birth-and-death processes
    • Novozhilov, A. S., Karev, G. P., & Koonin, E. V. Biological applications of the theory of birth-and-death processes. Brief Bioinform. 7, 70-85 (2006
    • (2006) Brief Bioinform , vol.7 , pp. 70-85
    • Novozhilov, A.S.1    Karev, G.P.2    Koonin, E.V.3
  • 174
    • 33845908745 scopus 로고    scopus 로고
    • Lack of resolution in the animal phylogeny: Closely spaced cladogeneses or undetected systematic errors?
    • Baurain, D., Brinkmann, H., & Philippe, H. Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors? Mol. Biol. Evol. 24, 6-9 (2007
    • (2007) Mol. Biol. Evol , vol.24 , pp. 6-9
    • Baurain, D.1    Brinkmann, H.2    Philippe, H.3
  • 175
    • 34948908604 scopus 로고    scopus 로고
    • The zebrafish genome in context: Ohnologs gone missing
    • Postlethwait, J. H. The zebrafish genome in context: ohnologs gone missing. J. Exp. Zool. B Mol. Dev. Evol. 308, 563-577 (2007
    • (2007) J. Exp. Zool. B Mol. Dev. Evol , vol.308 , pp. 563-577
    • Postlethwait, J.H.1
  • 176
    • 68149122283 scopus 로고    scopus 로고
    • Automated identification of conserved synteny after whole-genome duplication
    • Catchen, J. M., Conery, J. S., & Postlethwait, J. H. Automated identification of conserved synteny after whole-genome duplication. Genome Res. 19, 1497-1505 (2009
    • (2009) Genome Res , vol.19 , pp. 1497-1505
    • Catchen, J.M.1    Conery, J.S.2    Postlethwait, J.H.3
  • 177
    • 84964456601 scopus 로고    scopus 로고
    • Synfind: Compiling syntenic regions across any set of genomes on demand
    • Tang, H., et al. SynFind: compiling syntenic regions across any set of genomes on demand. Genome Biol. Evol. 11, 3286-3298 (2015
    • (2015) Genome Biol. Evol , vol.11 , pp. 3286-3298
    • Tang, H.1
  • 178
    • 37849032744 scopus 로고    scopus 로고
    • Comparative genomics search for losses of long-established genes on the human lineage
    • Zhu, J., et al. Comparative genomics search for losses of long-established genes on the human lineage. PLoS Comput. Biol. 3, e247 (2007
    • (2007) Plos Comput. Biol , vol.3 , pp. e247
    • Zhu, J.1
  • 179
    • 77952694676 scopus 로고    scopus 로고
    • Identification and analysis of unitary pseudogenes: Historic and contemporary gene losses in humans and other primates
    • Zhang, Z. D., Frankish, A., Hunt, T., Harrow, J., & Gerstein, M. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. Genome Biol. 11, R26 (2010
    • (2010) Genome Biol , vol.11 , pp. R26
    • Zhang, Z.D.1    Frankish, A.2    Hunt, T.3    Harrow, J.4    Gerstein, M.5
  • 180
    • 84929149194 scopus 로고    scopus 로고
    • Identification and analysis of unitary loss of long-established protein-coding genes in Poaceae shows evidences for biased gene loss and putatively functional transcription of relics
    • Zhao, Y., et al. Identification and analysis of unitary loss of long-established protein-coding genes in Poaceae shows evidences for biased gene loss and putatively functional transcription of relics. BMC Evol. Biol. 15, 66 (2015
    • (2015) BMC Evol. Biol , vol.15 , pp. 66
    • Zhao, Y.1
  • 181
    • 84948666294 scopus 로고    scopus 로고
    • Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling
    • Inoue, J., Sato, Y., Sinclair, R., Tsukamoto, K., & Nishida, M. Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling. Proc. Natl Acad. Sci. USA 112, 14918-14923 (2015
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 14918-14923
    • Inoue, J.1    Sato, Y.2    Sinclair, R.3    Tsukamoto, K.4    Nishida, M.5
  • 182
    • 84868097156 scopus 로고    scopus 로고
    • A forward genomics approach links genotype to phenotype using independent phenotypic losses among related species
    • Hiller, M., et al. A forward genomics approach links genotype to phenotype using independent phenotypic losses among related species. Cell Rep. 2, 817-823 (2012
    • (2012) Cell Rep , vol.2 , pp. 817-823
    • Hiller, M.1
  • 183
    • 84871254993 scopus 로고    scopus 로고
    • Hundreds of conserved non-coding genomic regions are independently lost in mammals
    • Hiller, M., Schaar, B. T., & Bejerano, G. Hundreds of conserved non-coding genomic regions are independently lost in mammals. Nucleic Acids Res. 40, 11463-11476 (2012
    • (2012) Nucleic Acids Res , vol.40 , pp. 11463-11476
    • Hiller, M.1    Schaar, B.T.2    Bejerano, G.3
  • 184
    • 78650895972 scopus 로고    scopus 로고
    • Loss of function variants in the genomes of healthy humans
    • MacArthur, D. G., & Tyler-Smith, C. Loss of function variants in the genomes of healthy humans. Hum. Mol. Genet. 19, R125-R130 (2010
    • (2010) Hum. Mol. Genet , vol.19 , pp. R125-R130
    • MacArthur, D.G.1    Tyler-Smith, C.2
  • 185
    • 84863116742 scopus 로고    scopus 로고
    • A systematic survey of loss of function variants in human protein-coding genes
    • MacArthur, D. G., et al. A systematic survey of loss of function variants in human protein-coding genes. Science 335, 823-828 (2012
    • (2012) Science , vol.335 , pp. 823-828
    • MacArthur, D.G.1
  • 186
    • 84858439718 scopus 로고    scopus 로고
    • Genomics: How pervasive are defective genes?
    • Burgess, D. J. Genomics: how pervasive are defective genes? Nat. Rev. Genet. 13, 222 (2012
    • (2012) Nat. Rev. Genet , vol.13 , pp. 222
    • Burgess, D.J.1
  • 188
    • 84929015299 scopus 로고    scopus 로고
    • Human genomics effect of predicted protein-truncating genetic variants on the human transcriptome
    • Rivas, M. A., et al. Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptome. Science 348, 666-669 (2015
    • (2015) Science , vol.348 , pp. 666-669
    • Rivas, M.A.1
  • 189
    • 84905460411 scopus 로고    scopus 로고
    • Distribution and medical impact of loss of function variants in the finnish founder population
    • Lim, E. T., et al. Distribution and medical impact of loss of function variants in the Finnish founder population. PLoS Genet. 10, e1004494 (2014
    • (2014) Plos Genet , vol.10 , pp. e1004494
    • Lim, E.T.1
  • 190
    • 84927174855 scopus 로고    scopus 로고
    • Population genomics: A new window into the genetics of complex diseases
    • Koch, L. Population genomics: a new window into the genetics of complex diseases. Nat. Rev. Genet. 15, 644-645 (2014
    • (2014) Nat. Rev. Genet , vol.15 , pp. 644-645
    • Koch, L.1
  • 191
    • 84949179221 scopus 로고    scopus 로고
    • eds Soltis, P. S., & Soltis, D. E. Springer
    • Cañestro, C. in Polyploidy and Genome Evolution (eds Soltis, P. S., & Soltis, D. E.) 309-339 (Springer, 2012
    • (2012) Polyploidy and Genome Evolution , pp. 309-339
    • Cañestro, C.1
  • 192
    • 0016669094 scopus 로고
    • Evolution at two levels in humans and chimpanzees
    • King, M. C., & Wilson, A. C. Evolution at two levels in humans and chimpanzees. Science 188, 107-116 (1975
    • (1975) Science , vol.188 , pp. 107-116
    • King, M.C.1    Wilson, A.C.2
  • 193
    • 37249061101 scopus 로고    scopus 로고
    • Accelerated rate of gene gain and loss in primates
    • Hahn, M. W., Demuth, J. P., & Han, S. G. Accelerated rate of gene gain and loss in primates. Genetics 177, 1941-1949 (2007
    • (2007) Genetics , vol.177 , pp. 1941-1949
    • Hahn, M.W.1    Demuth, J.P.2    Han, S.G.3
  • 194
    • 67650787162 scopus 로고    scopus 로고
    • Culture optimization for the emergent zooplanktonic model organism Oikopleura dioica
    • Bouquet, J. M., et al. Culture optimization for the emergent zooplanktonic model organism Oikopleura dioica. J. Plankton Res. 31, 359-370 (2009
    • (2009) J. Plankton Res , vol.31 , pp. 359-370
    • Bouquet, J.M.1
  • 195
    • 84921547449 scopus 로고    scopus 로고
    • Oikopleura dioica culturing made easy: A low-cost facility for an emerging animal model in evodevo
    • Marti-Solans, J., et al. Oikopleura dioica culturing made easy: a low-cost facility for an emerging animal model in EvoDevo. Genesis 53, 183-193 (2015
    • (2015) Genesis , vol.53 , pp. 183-193
    • Marti-Solans, J.1
  • 196
    • 84928902042 scopus 로고    scopus 로고
    • DNA interference: DNA-induced gene silencing in the appendicularian Oikopleura dioica
    • Omotezako, T., Onuma, T. A., & Nishida, H. DNA interference: DNA-induced gene silencing in the appendicularian Oikopleura dioica. Proc Biol Sci 282, 20150435 (2015
    • (2015) Proc Biol Sci , vol.282 , pp. 20150435
    • Omotezako, T.1    Onuma, T.A.2    Nishida, H.3
  • 197
    • 84859055193 scopus 로고    scopus 로고
    • DNA methylation in amphioxus: From ancestral functions to new roles in vertebrates
    • Albalat, R., Marti-Solans, J., & Cañestro, C. DNA methylation in amphioxus: from ancestral functions to new roles in vertebrates. Brief Funct. Genom. 11, 142-155 (2012
    • (2012) Brief Funct. Genom , vol.11 , pp. 142-155
    • Albalat, R.1    Marti-Solans, J.2    Cañestro, C.3
  • 198
    • 44649088993 scopus 로고    scopus 로고
    • Altered miRNA repertoire in the simplified chordate oikopleura dioica
    • Fu, X., Adamski, M., & Thompson, E. M. Altered miRNA repertoire in the simplified chordate. Oikopleura dioica. Mol. Biol. Evol. 25, 1067-1080 (2008
    • (2008) Mol. Biol. Evol , vol.25 , pp. 1067-1080
    • Fu, X.1    Adamski, M.2    Thompson, E.M.3
  • 199
    • 28044432996 scopus 로고    scopus 로고
    • The caspase family in urochordates: Distinct evolutionary fates in ascidians and larvaceans
    • Weill, M., Philips, A., Chourrout, D., & Fort, P. The caspase family in urochordates: distinct evolutionary fates in ascidians and larvaceans. Biol. Cell 97, 857-866 (2005
    • (2005) Biol. Cell , vol.97 , pp. 857-866
    • Weill, M.1    Philips, A.2    Chourrout, D.3    Fort, P.4
  • 200
    • 84856425362 scopus 로고    scopus 로고
    • Conservation and divergence of chemical defense system in the tunicate oikopleura dioica revealed by genome wide response to two xenobiotics
    • Yadetie, F., et al. Conservation and divergence of chemical defense system in the tunicate Oikopleura dioica revealed by genome wide response to two xenobiotics. BMC Genomics 13, 55 (2012
    • (2012) BMC Genomics , vol.13 , pp. 55
    • Yadetie, F.1
  • 201
    • 4544320630 scopus 로고    scopus 로고
    • Hox cluster disintegration with persistent anteroposterior order of expression in oikopleura dioica
    • Seo, H. C., et al. Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica. Nature 431, 67-71 (2004
    • (2004) Nature , vol.431 , pp. 67-71
    • Seo, H.C.1
  • 203
    • 51549116267 scopus 로고    scopus 로고
    • Retinoic acid synthesis and signaling during early organogenesis
    • Duester, G. Retinoic acid synthesis and signaling during early organogenesis. Cell 134, 921-931 (2008
    • (2008) Cell , vol.134 , pp. 921-931
    • Duester, G.1
  • 204
    • 34247636202 scopus 로고    scopus 로고
    • Development of a chordate anterior-posterior axis without classical retinoic acid signaling
    • Cañestro, C., & Postlethwait, J. H. Development of a chordate anterior-posterior axis without classical retinoic acid signaling. Dev. Biol. 305, 522-538 (2007
    • (2007) Dev. Biol , vol.305 , pp. 522-538
    • Cañestro, C.1    Postlethwait, J.H.2
  • 205
    • 0034284489 scopus 로고    scopus 로고
    • Multiple nonfunctional alleles of CCR5 are frequent in various human populations
    • Blanpain, C., et al. Multiple nonfunctional alleles of CCR5 are frequent in various human populations. Blood 96, 1638-1645 (2000
    • (2000) Blood , vol.96 , pp. 1638-1645
    • Blanpain, C.1
  • 206
    • 33750460281 scopus 로고    scopus 로고
    • Insights into social insects from the genome of the honeybee Apis mellifera
    • Honeybee Genome Sequencing Consortium
    • Honeybee Genome Sequencing Consortium. Insights into social insects from the genome of the honeybee Apis mellifera. Nature 443, 931-949 (2006
    • (2006) Nature , vol.443 , pp. 931-949
  • 207
    • 33750486851 scopus 로고    scopus 로고
    • Functional CpG methylation system in a social insect
    • Wang, Y., et al. Functional CpG methylation system in a social insect. Science 314, 645-647 (2006
    • (2006) Science , vol.314 , pp. 645-647
    • Wang, Y.1
  • 208
    • 57649210781 scopus 로고    scopus 로고
    • Evolution of DNA-methylation machinery: DNA methyltransferases and methyl-DNA binding proteins in the amphioxus Branchiostoma floridae
    • Albalat, R. Evolution of DNA-methylation machinery: DNA methyltransferases and methyl-DNA binding proteins in the amphioxus Branchiostoma floridae. Dev. Genes Evol. 218, 691-701 (2008
    • (2008) Dev. Genes Evol , vol.218 , pp. 691-701
    • Albalat, R.1
  • 209
    • 41949090434 scopus 로고    scopus 로고
    • The genome of the model beetle and pest Tribolium castaneum
    • Tribolium Genome Sequencing Consortium
    • Tribolium Genome Sequencing Consortium. The genome of the model beetle and pest Tribolium castaneum. Nature 452, 949-955 (2008
    • (2008) Nature , vol.452 , pp. 949-955
  • 210
    • 79551632781 scopus 로고    scopus 로고
    • The ecoresponsive genome of Daphnia pulex
    • Colbourne, J. K., et al. The ecoresponsive genome of Daphnia pulex. Science 331, 555-561 (2011
    • (2011) Science , vol.331 , pp. 555-561
    • Colbourne, J.K.1
  • 211
    • 84902006643 scopus 로고    scopus 로고
    • The ctenophore genome and the evolutionary origins of neural systems
    • Moroz, L. L., et al. The ctenophore genome and the evolutionary origins of neural systems. Nature 510, 109-114 (2014
    • (2014) Nature , vol.510 , pp. 109-114
    • Moroz, L.L.1
  • 212
    • 84950103731 scopus 로고    scopus 로고
    • Genomic data do not support comb jellies as the sister group to all other animals
    • Pisani, D., et al. Genomic data do not support comb jellies as the sister group to all other animals. Proc. Natl Acad. Sci. USA 112, 15402-15407 (2015
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 15402-15407
    • Pisani, D.1
  • 213
    • 33846685946 scopus 로고    scopus 로고
    • Gene loss rate: A probabilistic measure for the conservation of eukaryotic genes
    • Borenstein, E., Shlomi, T., Ruppin, E., & Sharan, R. Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes. Nucleic Acids Res. 35, e7 (2007
    • (2007) Nucleic Acids Res , vol.35 , pp. e7
    • Borenstein, E.1    Shlomi, T.2    Ruppin, E.3    Sharan, R.4
  • 214
    • 0142124263 scopus 로고    scopus 로고
    • Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
    • Krylov, D. M., Wolf, Y. I., Rogozin, I. B., & Koonin, E. V. Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution. Genome Res. 13, 2229-2235 (2003
    • (2003) Genome Res , vol.13 , pp. 2229-2235
    • Krylov, D.M.1    Wolf, Y.I.2    Rogozin, I.B.3    Koonin, E.V.4
  • 215
    • 33746192317 scopus 로고    scopus 로고
    • Unifying measures of gene function and evolution
    • Wolf, Y. I., Carmel, L., & Koonin, E. V. Unifying measures of gene function and evolution. Proc. Biol. Sci. 273, 1507-1515 (2006
    • (2006) Proc. Biol. Sci , vol.273 , pp. 1507-1515
    • Wolf, Y.I.1    Carmel, L.2    Koonin, E.V.3
  • 217
    • 84937053662 scopus 로고    scopus 로고
    • Wrecks of ancient life genetic variants vetted by natural selection
    • Postlethwait, J. H. Wrecks of ancient life: genetic variants vetted by natural selection. Genetics 200, 675-678 (2015
    • (2015) Genetics , vol.200 , pp. 675-678
    • Postlethwait, J.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.