Evolution of genes and genomes on the Drosophila phylogeny

Nature

Volumn 450, Issue 7167, 2007, Pages 203-218

  Clark, Andrew G ^a   Eisen, Michael B ^b,c   Smith, Douglas R ^d   Bergman, Casey M ^e   Oliver, Brian ^f   Markow, Therese A ^g   Kaufman, Thomas C ^h   Kellis, Manolis ^i,j   Gelbart, William ^k   Iyer, Venky N ^c   Pollard, Daniel A ^c   Sackton, Timothy B ^a   Larracuente, Amanda M ^a   Singh, Nadia D ^a   Abad, Jose P ^l   Abt, Dawn N ^m   Adryan, Boris ⁿ   Aguade, Montserrat ^o   Akashi, Hiroshi ^p   Anderson, Wyatt W ^q   Aquadro, Charles F ^a   Ardell, David H ^r   Arguello, Roman ^s   Artieri, Carlo G ^t   Barbash, Daniel A ^a   Barker, Daniel ^u   Barsanti, Paolo ^v   Batterham, Phil ^w   Batzoglou, Serafim ^x   Begun, Dave ^y   Bhutkar, Arjun ^k,z   Blanco, Enrico ^aa   Bosak, Stephanie A ^d   Bradley, Robert K ^ab   Brand, Adrianne D ^d   Brent, Michael R ^ac   Brooks, Angela N ^c   Brown, Randall H ^ac   Butlin, Roger K ^ad   Caggese, Corrado ^v   Calvi, Brian R ^ae   Bernardo De Carvalho, A ^af   Caspi, Anat ^ab   Castrezana, Sergio ^ag   Celniker, Susan E ^b   Chang, Jean L ^j   Chapple, Charles ^aa   Chatterji, Sourav ^c,y   Chinwalla, Asif ^ah   Civetta, Alberto ^ai   Clifton, Sandra W ^ah   Comeron, Josep M ^aj   Costello, James C ^ak   Coyne, Jerry A ^s   Daub, Jennifer ^al   David, Robert G ^d   Delcher, Arthur L ^am   Delehaunty, Kim ^ah   Do, Chuong B ^x   Ebling, Heather ^d   Edwards, Kevin ^an   Eickbush, Thomas ^ao   Evans, Jay D ^ap   Filipski, Alan ^aq   Findeiß, Sven ^aq,ar   Freyhult, Eva ^r   Fulton, Lucinda ^ah   Fulton, Robert ^ah   Garcia, Ana C L ^as   Gardiner, Anastasia ^u   Garfield, David A ^at   Garvin, Barry E ^d   Gibson, Greg ^au   Gilbert, Don ^h   Gnerre, Sante ^j   Godfrey, Jennifer ^ah   Good, Robert ^w   Gotea, Valer ^p   Gravely, Brenton ^av   Greenberg, Anthony J ^a   Griffiths Jones, Sam ^e,al   Gross, Samuel ^x   Guigo, Roderic ^aa,aw   Gustafson, Erik A ^d   Haerty, Wilfried ^t   Hahn, Matthew W ^h,ak   Halligan, Daniel L ^ax   Halpern, Aaron L ^ay   Halter, Gillian M ^p   Han, Mira V ^ak   Heger, Andreas ^az   Hillier, LaDeana ^ah   Hinrichs, Angie S ^ba   Holmes, Ian ^ab   Hoskins, Roger A ^b   Hubisz, Melissa J ^s   Hultmark, Dan ^bb   Huntley, Melanie A ^a   Jaffe, David B ^j   Jagadeeshan, Santosh ^t   Jeck, William R ^bc   Johnson, Justin ^ay   Jones, Corbin D ^bc   Jordan, William C ^bd   Karpen, Gary H ^b,c   Kataoka, Eiko ^be   Keightley, Peter D ^ax   Kheradpour, Pouya ⁱ   Kirkness, Ewen F ^ay   Koerich, Leonardo B ^af   Kristiansen, Karsten ^bf   Kudrna, Dave ^bg   Kulathinal, Rob J ^k   Kumar, Sudhir ^aq,bh   Kwok, Roberta ^h   Lander, Eric ^j   Langley, Charles H ^y   Lapoint, Richard ^bi   Lazzaro, Brian P ^a   Lee, So Jeong ^bg   Levesque, Lisa ^ai   Li, Ruiqiang ^bf,bj   Lin, Chiao Feng ^p   Lin, Michael F ^i,j   Lindblad Toh, Kerstin ^j   Llopart, Ana ^aj   Long, Manyuan ^s   Low, Lloyd ^w   Lozovsky, Elena ^k   Lu, Jian ^s   Luo, Meizhong ^bg   Machado, Carlos A ^g   Makalowski, Wojciech ^p   Marzo, Mar ^bk   Matsuda, Muneo ^be   Matzkin, Luciano ^g   McAllister, Bryant ^aj   McBride, Carolyn S ^y   McKernan, Brendan ^d   McKernan, Kevin ^d   Mendez Lago, Maria ^l   Minx, Patrick ^ah   Mollenhauer, Michael U ^p   Montooth, Kristi ^m   Mount, Stephen M ^am   Mu, Xu ^p   Myers, Eugene ^bl   Negre, Barbara ^bm   Newfeld, Stuart ^bh   Nielsen, Rasmus ^bn   Noor, Mohamed A F ^at   O'Grady, Patrick ^bi   Pachter, Lior ^c   Papaceit, Montserrat ^o   Parisi, Matthew J ^d   Parisi, Michael ^f   Parts, Leopold ⁱ   Pedersen, Jakob S ^ba,bn   Pesole, Graziano ^v   Phillippy, Adam M ^am   Ponting, Chris P ^az   Pop, Mihai ^am   Porcelli, Damiano ^v   Powell, Jeffrey R ^bo   Prohaska, Sonja ^aq,bp   Pruitt, Kim ^f   Puig, Marta ^bk   Quesneville, Hadi ^bq   Ravi Ram, Kristipati ^a   Rand, David ^m   Rasmussen, Matthew D ⁱ   Reed, Laura K ^au   Reenan, Robert ^br   Reily, Amy ^ah   Remington, Karin A ^ay   Rieger, Tania T ^bs   Ritchie, Michael G ^u   Robin, Charles ^w   Rogers, Yu Hui ^ay   Rohde, Claudia ^bt   Rozas, Julio ^o   Rubenfield, Marc J ^d   Ruiz, Alfredo ^bk   Russo, Susan ^k   Salzberg, Steven L ^am   Sanchez Gracia, Alejandro ^o,bu   Saranga, David J ^d   Sato, Hajime ^be   Schaeffer, Stephen W ^p   Schatz, Michael C ^am   Schlenke, Todd ^bv   Schwartz, Russell ^bw   Segarra, Carmen ^o   Singh, Rama S ^t   Sirot, Laura ^a   Sirota, Marina ^bx   Sisneros, Nicholas B ^bg   Smith, Chris D ^b,by   Smith, Temple F ^z   Spieth, John ^ah   Stage, Deborah E ^ao   Stark, Alexander ^i,j   Stephan, Wolfgang ^bz   Strausberg, Robert L ^ay   Strempel, Sebastian ^bz   Sturgill, David ^f   Sutton, Granger ^ay   Sutton, Granger G ^ay   Tao, Wei ^d   Teichmann, Sarah ⁿ   Tobari, Yoshiko N ^ca   Tomimura, Yoshihiko ^cb   Tsolas, Jason M ^d   Valente, Vera L S ^as   Venter, Eli ^ay   Craig Venter, J ^ay   Vicario, Saverio ^bo   Vieira, Filipe G ^o   Vilella, Albert J ^o,cc   Villasante, Alfredo ^l   Walenz, Brian ^ay   Wang, Jun ^bf,bj   Wasserman, Marvin ^cd   Watts, Thomas ^g   Wilson, Derek ⁿ   Wilson, Richard K ^ah   Wing, Rod A ^bg   Wolfner, Mariana F ^a   Wong, Alex ^a   Ka Shu Wong, Gane ^bj,ce   Wu, Chung I ^s   Wu, Gabriel ^ab   Yamamoto, Daisuke ^cf   Yang, Hsiao Pei ^a   Yang, Shiaw Pyng ^ah   Yorke, James A ^am   Yoshida, Kiyohito ^cg   Zdobnov, Evgeny ^ch   Zhang, Peili ^k   Zhang, Yu ^f   Zimin, Aleksey V ^am   Baldwin, Jennifer ^j   Abdouelleil, Amr ^j   Abdulkadir, Jamal ^j   Abebe, Adal ^j   Abera, Brikti ^j   Abreu, Justin ^j   Christophe Acer, St ^j   Aftuck, Lynne ^j   Alexander, Allen ^j   An, Peter ^j   Anderson, Erica ^j   Anderson, Scott ^j   Arachi, Harindra ^j   Azer, Marc ^j   Bachantsang, Pasang ^j   Barry, Andrew ^j   Bayul, Tashi ^j   Berlin, Aaron ^j   Bessette, Daniel ^j   Bloom, Toby ^j   Blye, Jason ^j   Boguslavskiy, Leonid ^j   Bonnet, Claude ^j   Boukhgalter, Boris ^j   Bourzgui, Imane ^j   Brown, Adam ^j   Cahill, Patrick ^j   Channer, Sheridon ^j   Cheshatsang, Yama ^j   Chuda, Lisa ^j   Citroen, Mieke ^j   Collymore, Alville ^j   Cooke, Patrick ^j   Costello, Maura ^j   D'Aco, Katie ^j   Daza, Riza ^j   De Haan, Georgius ^j   Degray, Stuart ^j   Demaso, Christina ^j   Dhargay, Norbu ^j   Dooley, Kimberly ^j   Dooley, Erin ^j   Doricent, Missole ^j   Dorje, Passang ^j   Dorjee, Kunsang ^j   Dupes, Alan ^j   Elong, Richard ^j   Falk, Jill ^j   Farina, Abderrahim ^j   Faro, Susan ^j   Ferguson, Diallo ^j   Fisher, Sheila ^j   Foley, Chelsea D ^j   Franke, Alicia ^j   Friedrich, Dennis ^j   Gadbois, Loryn ^j   Gearin, Gary ^j   Gearin, Christina R ^j   Giannoukos, Georgia ^j   Goode, Tina ^j   Graham, Joseph ^j   Grandbois, Edward ^j   Grewal, Sharleen ^j   Gyaltsen, Kunsang ^j   Hafez, Nabil ^j   Hagos, Birhane ^j   Hall, Jennifer ^j   Henson, Charlotte ^j   Hollinger, Andrew ^j   Honan, Tracey ^j   Huard, Monika D ^j   Hughes, Leanne ^j   Hurhula, Brian ^j   Erii Husby, M ^j   Kamat, Asha ^j   Kanga, Ben ^j   Kashin, Seva ^j   Khazanovich, Dmitry ^j   Kisner, Peter ^j   Lance, Krista ^j   Lara, Marcia ^j   Lee, William ^j   Lennon, Niall ^j   Letendre, Frances ^j   Levine, Rosie ^j   Lipovsky, Alex ^j   Liu, Xiaohong ^j   Liu, Jinlei ^j   Liu, Shangtao ^j   Lokyitsang, Tashi ^j   Lokyitsang, Yeshi ^j   Lubonja, Rakela ^j   Lui, Annie ^j   MacDonald, Pen ^j   Magnisalis, Vasilia ^j   Maru, Kebede ^j   Matthews, Charles ^j   McCusker, William ^j   McDonough, Susan ^j   Mehta, Teena ^j   Meldrim, James ^j   Meneus, Louis ^j   Mihai, Oana ^j   Mihalev, Atanas ^j   Mihova, Tanya ^j   Mittelman, Rachel ^j   Mlenga, Valentine ^j   Montmayeur, Anna ^j   Mulrain, Leonidas ^j   Navidi, Adam ^j   Naylor, Jerome ^j   Negash, Tamrat ^j   Nguyen, Thu ^j   Nguyen, Nga ^j   Nicol, Robert ^j   Norbu, Choe ^j   Norbu, Nyima ^j   Novod, Nathaniel ^j   O'Neill, Barry ^j   Osman, Sahal ^j   Markiewicz, Eva ^j   Oyono, Otero L ^j   Patti, Christopher ^j   Phunkhang, Pema ^j   Pierre, Fritz ^j   Priest, Margaret ^j   Raghuraman, Sujaa ^j   Rege, Filip ^j   Reyes, Rebecca ^j   Rise, Cecil ^j   Rogov, Peter ^j   Ross, Keenan ^j   Ryan, Elizabeth ^j   Settipalli, Sampath ^j   Shea, Terry ^j   Sherpa, Ngawang ^j   Shi, Lu ^j   Shih, Diana ^j   Sparrow, Todd ^j   Spaulding, Jessica ^j   Stalker, John ^j   Stange Thomann, Nicole ^j   Stavropoulos, Sharon ^j   Stone, Catherine ^j   Strader, Christopher ^j   Tesfaye, Senait ^j   Thomson, Talene ^j   Thoulutsang, Yama ^j   Thoulutsang, Dawa ^j   Topham, Kerri ^j   Topping, Ira ^j   Tsamla, Tsamla ^j   Vassiliev, Helen ^j   Vo, Andy ^j   Wangchuk, Tsering ^j   Wangdi, Tsering ^j   Weiand, Michael ^j   Wilkinson, Jane ^j   Wilson, Adam ^j   Yadav, Shailendra ^j   Young, Geneva ^j   Yu, Qing ^j   Zembek, Lisa ^j   Zhong, Danni ^j   Zimmer, Andrew ^j   Zwirko, Zac ^j   Alvarez, Pablo ^j   Brockman, Will ^j   Butler, Jonathan ^j   Chin, Cheewhye ^j   Grabherr, Manfred ^j   Kleber, Michael ^j   Mauceli, Evan ^j   MacCallum, Iain ^j   more..

^a Department of Obstetrics Gynecology   (United States)

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d Agencourt Bioscience Corporation   (United States)

^e UNIVERSITY OF MANCHESTER   (United Kingdom)

^f NATIONAL INSTITUTES OF HEALTH   (United States)

^g University of Arizona   (United States)

^h INDIANA UNIVERSITY   (United States)

ⁱ MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^j BROAD INSTITUTE OF MIT AND HARVARD   (United States)

^k HARVARD UNIVERSITY   (United States)

^l UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

^m BROWN UNIVERSITY   (United States)

ⁿ MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

^o UNIVERSITY OF BARCELONA   (Spain)

^p PENNSYLVANIA STATE UNIVERSITY   (United States)

^q Department of Ecology and Evolutionary Biology Brown University ^*  (United States)

^r UPPSALA UNIVERSITY   (Sweden)

^s UNIVERSITY OF CHICAGO   (United States)

^t MCMASTER UNIVERSITY   (Canada)

^u UNIVERSITY OF ST ANDREWS   (United Kingdom)

^v UNIVERSITY OF BARI   (Italy)

^w UNIVERSITY OF MELBOURNE   (Australia)

^x Stanford University   (United States)

^y UNIVERSITY OF CALIFORNIA   (United States)

^z Boston University   (United States)

^aa UNIVERSITAT POMPEU FABRA   (Spain)

^ab University of California at Berkeley   (United States)

^ac WASHINGTON UNIVERSITY   (United States)

^ad UNIVERSITY OF SHEFFIELD   (United Kingdom)

^ae SYRACUSE UNIVERSITY   (United States)

^af FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^ag Tucson Stock Center   (United States)

^ah WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^ai UNIVERSITY OF WINNIPEG   (Canada)

^aj UNIVERSITY OF IOWA   (United States)

^ak INDIANA UNIVERSITY   (United States)

^al WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^am Bldg 142   (United States)

^an ILLINOIS STATE UNIVERSITY   (United States)

^ao UNIVERSITY OF ROCHESTER   (United States)

^ap AGRICULTURAL RESEARCH SERVICE   (United States)

^aq Arizona State University   (United States)

^ar UNIVERSITY OF LEIPZIG   (Germany)

^as FEDERAL UNIVERSITY OF RIO GRANDE DO SUL   (Brazil)

^at DUKE UNIVERSITY   (United States)

^au NORTH CAROLINA STATE UNIVERSITY   (United States)

^av UNIVERSITY OF CONNECTICUT   (United States)

^aw CENTRE FOR GENOMIC REGULATION CRG   (Spain)

^ax UNIVERSITY OF EDINBURGH   (United Kingdom)

^ay J CRAIG VENTER INSTITUTE   (United States)

^az UNIVERSITY OF OXFORD   (United Kingdom)

^ba University of California Santa Cruz   (United States)

^bb UMEÅ UNIVERSITY   (Sweden)

^bc UNIVERSITY OF NORTH CAROLINA   (United States)

^bd INSTITUTE OF ZOOLOGY   (United Kingdom)

^be KYORIN UNIVERSITY   (Japan)

^bf UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^bg UNIVERSITY OF ARIZONA   (United States)

^bh ARIZONA STATE UNIVERSITY   (United States)

^bi UNIVERSITY OF CALIFORNIA   (United States)

^bj BGI SHENZHEN   (China)

^bk UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

^bl HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^bm UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^bn UNIVERSITY OF COPENHAGEN   (Denmark)

^bo YALE UNIVERSITY   (United States)

^bp ARIZONA STATE UNIVERSITY   (United States)

^bq INSTITUT JACQUES MONOD   (France)

^br BROWN UNIVERSITY   (United States)

^bs DEPARTAMENTO DE MICOLOGIA   (Brazil)

^bt FEDERAL UNIVERSITY OF PERNAMBUCO   (Brazil)

^bu INSTITUTO CAJAL   (Spain)

^bv EMORY UNIVERSITY   (United States)

^bw CARNEGIE MELLON UNIVERSITY   (United States)

^bx STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^by SAN FRANCISCO STATE UNIVERSITY   (United States)

^bz UNIVERSITY OF MUNICH   (Germany)

^ca Institute of Evolutionary Biology   (Japan)

^cb Shiba Gakuen   (Japan)

^cc EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^cd CITY UNIVERSITY OF NEW YORK   (United States)

^ce UNIVERSITY OF ALBERTA   (Canada)

^cf TOHOKU UNIVERSITY   (Japan)

^cg HOKKAIDO UNIVERSITY   (Japan)

^ch UNIVERSITY OF GENEVA   (Switzerland)

more..

Author keywords

[No Author keywords available]

Indexed keywords

RNA; CODON; DROSOPHILA PROTEIN; TRANSPOSON; UNTRANSLATED RNA;

BEHAVIORAL ECOLOGY; COMPARATIVE STUDY; DIVERGENCE; EVOLUTION; FLY; GENE; GENETICS; GENOME; PHYLOGENETICS; PHYLOGENY; PHYSIOLOGY;

ANIMAL BEHAVIOR; ARTICLE; CYTOLOGY; DROSOPHILA MELANOGASTER; GENE SEQUENCE; GENETIC VARIABILITY; GENOME; MOLECULAR EVOLUTION; NEUROBIOLOGY; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; ANIMAL; CLASSIFICATION; CODON; COMPARATIVE STUDY; DNA SEQUENCE; DROSOPHILA; GENE; GENE ORDER; GENETICS; GENOMICS; IMMUNITY; IMMUNOLOGY; INSECT GENOME; METABOLISM; MITOCHONDRIAL GENOME; MULTIGENE FAMILY; REPRODUCTION; SEQUENCE ALIGNMENT; SYNTENY; TRANSPOSON;

ANIMALIA; DROSOPHILA MELANOGASTER;

ANIMALS; CODON; DNA TRANSPOSABLE ELEMENTS; DROSOPHILA; DROSOPHILA PROTEINS; EVOLUTION, MOLECULAR; GENE ORDER; GENES, INSECT; GENOME, INSECT; GENOME, MITOCHONDRIAL; GENOMICS; IMMUNITY; MULTIGENE FAMILY; PHYLOGENY; REPRODUCTION; RNA, UNTRANSLATED; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SYNTENY;

EID: 47149117454     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature06341     Document Type: Article

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