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Volumn 508, Issue 7497, 2014, Pages 488-493

Origins and functional evolution of y chromosomes across mammals

Author keywords

[No Author keywords available]

Indexed keywords

BIRD; CHROMOSOME; CONSERVATION GENETICS; GENE; GENE EXPRESSION; GENOME; MAMMAL; RECOMBINATION; SEX DETERMINATION; SPATIOTEMPORAL ANALYSIS;

EID: 84899484057     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature13151     Document Type: Article
Times cited : (374)

References (92)
  • 1
    • 78649823499 scopus 로고    scopus 로고
    • Sry: The master switch in mammalian sex determination
    • Kashimada, K. & Koopman, P. Sry: the master switch in mammalian sex determination. Development 137, 3921-3930 (2010).
    • (2010) Development , vol.137 , pp. 3921-3930
    • Kashimada, K.1    Koopman, P.2
  • 3
    • 43249118306 scopus 로고    scopus 로고
    • Chromosomal genemovements reflect the recent origin and biology of therian sex chromosomes
    • Potrzebowski, L. et al.Chromosomal genemovements reflect the recent origin and biology of therian sex chromosomes. PLoS Biol. 6, e80 (2008).
    • (2008) PLoS Biol. , vol.6
    • Potrzebowski, L.1
  • 4
    • 43749100749 scopus 로고    scopus 로고
    • Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes
    • Veyrunes, F. et al. Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes. Genome Res. 18, 965-973 (2008).
    • (2008) Genome Res. , vol.18 , pp. 965-973
    • Veyrunes, F.1
  • 5
    • 11144346999 scopus 로고    scopus 로고
    • In the platypus a meiotic chain of ten sex chromosomes shares genes with the bird Z andmammal X chromosomes
    • Grü tzner, F. et al. In the platypus a meiotic chain of ten sex chromosomes shares genes with the bird Z andmammal X chromosomes. Nature 432, 913-917 (2004).
    • (2004) Nature , vol.432 , pp. 913-917
    • Grützner, F.1
  • 7
    • 84872503128 scopus 로고    scopus 로고
    • Y-chromosome evolution: Emerging insights into processes of Y-chromosome degeneration
    • Bachtrog, D. Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration. Nature Rev. Genet. 14, 113-124 (2013).
    • (2013) Nature Rev. Genet. , vol.14 , pp. 113-124
    • Bachtrog, D.1
  • 8
    • 84861541065 scopus 로고    scopus 로고
    • Mechanisms and evolutionary patterns of mammalian and avian dosage compensation
    • Julien, P. et al. Mechanisms and evolutionary patterns of mammalian and avian dosage compensation. PLoS Biol. 10, e1001328 (2012).
    • (2012) PLoS Biol. , vol.10
    • Julien, P.1
  • 9
    • 75749129731 scopus 로고    scopus 로고
    • Chimpanzee and human y chromosomes are remarkably divergent in structure and gene content
    • Hughes, J. F. et al. Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content. Nature 463, 536-539 (2010).
    • (2010) Nature , vol.463 , pp. 536-539
    • Hughes, J.F.1
  • 10
    • 84862777341 scopus 로고    scopus 로고
    • Strict evolutionary conservation followed rapid gene loss on human and rhesus y chromosomes
    • Hughes, J. F. et al. Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes. Nature 483, 82-86 (2012).
    • (2012) Nature , vol.483 , pp. 82-86
    • Hughes, J.F.1
  • 11
    • 0037967242 scopus 로고    scopus 로고
    • The male-specific region of the human y chromosome is a mosaic of discrete sequence classes
    • Skaletsky, H. et al. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature 423, 825-837 (2003).
    • (2003) Nature , vol.423 , pp. 825-837
    • Skaletsky, H.1
  • 12
    • 84883727395 scopus 로고    scopus 로고
    • Comparative analysis of mammalian y chromosomes illuminates ancestral structure and lineage-specific evolution
    • Li, G. et al. Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution. Genome Res. 23, 1486-1495 (2013).
    • (2013) Genome Res. , vol.23 , pp. 1486-1495
    • Li, G.1
  • 13
    • 77958479780 scopus 로고    scopus 로고
    • Can intra-Y gene conversion oppose the degeneration of the humanY chromosome? A simulation study
    • Marais, G. A., Campos, P. R. & Gordo, I. Can intra-Y gene conversion oppose the degeneration of the humanY chromosome? A simulation study. GenomeBiol. Evol. 2, 347-357 (2010).
    • (2010) GenomeBiol. Evol. , vol.2 , pp. 347-357
    • Marais, G.A.1    Campos, P.R.2    Gordo, I.3
  • 15
    • 84875362075 scopus 로고    scopus 로고
    • RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome
    • Ayers, K. L. et al. RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome. Genome Biol. 14, R26 (2013).
    • (2013) Genome Biol. , vol.14
    • Ayers, K.L.1
  • 17
    • 15244363491 scopus 로고    scopus 로고
    • The DNA sequence of the human X chromosome
    • Ross, M. T. et al. The DNA sequence of the human X chromosome. Nature 434, 325-337 (2005).
    • (2005) Nature , vol.434 , pp. 325-337
    • Ross, M.T.1
  • 18
    • 84857879226 scopus 로고    scopus 로고
    • Evolutionary history of novel genes on the tammar wallaby y chromosome: Implications for sex chromosome evolution
    • Murtagh, V. J. et al. Evolutionary history of novel genes on the tammar wallaby Y chromosome: implications for sex chromosome evolution. Genome Res. 22, 498-507 (2012).
    • (2012) Genome Res. , vol.22 , pp. 498-507
    • Murtagh, V.J.1
  • 19
    • 0033615708 scopus 로고    scopus 로고
    • Four evolutionary strata on the human X chromosome
    • Lahn, B. T. & Page, D. C. Four evolutionary strata on the human X chromosome. Science 286, 964-967 (1999).
    • (1999) Science , vol.286 , pp. 964-967
    • Lahn, B.T.1    Page, D.C.2
  • 20
    • 81355146419 scopus 로고    scopus 로고
    • Genomeanalyses substantiatemalemutation bias in many species
    • Wilson Sayres, M. A.& Makova, K. D. Genomeanalyses substantiatemalemutation bias in many species. Bioessays 33, 938-945 (2011).
    • (2011) Bioessays , vol.33 , pp. 938-945
    • Wilson Sayres, M.A.1    Makova, K.D.2
  • 21
    • 53649099479 scopus 로고    scopus 로고
    • Gene discovery and comparative analysis of X-degenerate genes from the domestic cat y chromosome
    • Pearks Wilkerson, A. J. et al. Gene discovery and comparative analysis of X-degenerate genes from the domestic cat Y chromosome. Genomics 92, 329-338 (2008).
    • (2008) Genomics , vol.92 , pp. 329-338
    • Pearks Wilkerson, A.J.1
  • 22
    • 84880678617 scopus 로고    scopus 로고
    • Male-specific region of the bovine y chromosomeis gene rich with a high transcriptomic activity in testis development
    • Chang, T. C., Yang, Y., Retzel, E. F. & Liu, W. S. Male-specific region of the bovine Y chromosomeis gene rich with a high transcriptomic activity in testis development. Proc. Natl Acad. Sci. USA 110, 12373-12378 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 12373-12378
    • Chang, T.C.1    Yang, Y.2    Retzel, E.F.3    Liu, W.S.4
  • 23
    • 0029000023 scopus 로고
    • The human y chromosome homologue of XG: Transcription of a naturally truncated gene
    • Weller, P. A., Critcher, R., Goodfellow, P. N., German, J. & Ellis, N. A. The human Y chromosome homologue of XG: transcription of a naturally truncated gene. Hum. Mol. Genet. 4, 859-868 (1995).
    • (1995) Hum. Mol. Genet. , vol.4 , pp. 859-868
    • Weller, P.A.1    Critcher, R.2    Goodfellow, P.N.3    German, J.4    Ellis, N.A.5
  • 24
    • 71449120886 scopus 로고    scopus 로고
    • Physicalmapping of the elephant X chromosome: Conservation of gene order over 105 million years
    • Rodr?́guez-Delgado, C. L., Waters, P. D., Gilbert, C., Robinson, T. J. & Graves, J. A. Physicalmapping of the elephant X chromosome: conservation of gene order over 105 million years. Chromosome Res. 17, 917-926 (2009).
    • (2009) Chromosome Res. , vol.17 , pp. 917-926
    • Rodŕguez-Delgado C., L.1
  • 25
    • 43249121975 scopus 로고    scopus 로고
    • The multiple sex chromosomes of platypus and echidna are not completely identical and several share homology with the avian Z
    • Rens, W. et al. The multiple sex chromosomes of platypus and echidna are not completely identical and several share homology with the avian Z. Genome Biol. 8, R243 (2007).
    • (2007) Genome Biol. , vol.8
    • Rens, W.1
  • 26
    • 43449123631 scopus 로고    scopus 로고
    • Genome analysis of the platypus reveals unique signatures of evolution
    • Warren, W. C. et al. Genome analysis of the platypus reveals unique signatures of evolution. Nature 453, 175-183 (2008).
    • (2008) Nature , vol.453 , pp. 175-183
    • Warren, W.C.1
  • 27
    • 84875524161 scopus 로고    scopus 로고
    • Just how conserved is vertebrate sex determination?
    • Cutting, A., Chue, J. & Smith, C. A. Just how conserved is vertebrate sex determination? Dev. Dyn. 242, 380-387 (2013).
    • (2013) Dev. Dyn. , vol.242 , pp. 380-387
    • Cutting, A.1    Chue, J.2    Smith, C.A.3
  • 28
    • 0032739889 scopus 로고    scopus 로고
    • Temperature-dependent sex determination in the American alligator: AMH precedes SOX9 expression
    • Western, P. S., Harry, J. L., Graves, J. A.&Sinclair, A. H. Temperature-dependent sex determination in the American alligator: AMH precedes SOX9 expression. Dev. Dyn. 216, 411-419 (1999).
    • (1999) Dev. Dyn. , vol.216 , pp. 411-419
    • Western, P.S.1    Harry, J.L.2    Graves, J.A.3    Sinclair, A.H.4
  • 29
    • 84857407869 scopus 로고    scopus 로고
    • A Y-linked anti-Mullerian hormone duplication takes over a critical role in sex determination
    • Hattori, R. S. et al. A Y-linked anti-Mullerian hormone duplication takes over a critical role in sex determination. Proc. Natl Acad. Sci. USA 109, 2955-2959 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 2955-2959
    • Hattori, R.S.1
  • 30
    • 84857363306 scopus 로고    scopus 로고
    • Identification ofmediator complex 26(Crsp7) gametologs on platypus X1 and Y5 sex chromosomes: A candidate testis-determining gene in monotremes?
    • Tsend-Ayush, E. et al. Identification ofmediator complex 26(Crsp7) gametologs on platypus X1 and Y5 sex chromosomes: a candidate testis-determining gene in monotremes? Chromosome Res. 20, 127-138 (2012).
    • (2012) Chromosome Res. , vol.20 , pp. 127-138
    • Tsend-Ayush, E.1
  • 31
    • 77957903598 scopus 로고    scopus 로고
    • Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): Genome assembly and analysis
    • Dalloul, R. A. et al. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol. 8, e1000475 (2010).
    • (2010) PLoS Biol. , vol.8
    • Dalloul, R.A.1
  • 32
    • 77950376512 scopus 로고    scopus 로고
    • The genome of a songbird
    • Warren, W. C. et al. The genome of a songbird. Nature 464, 757-762 (2010).
    • (2010) Nature , vol.464 , pp. 757-762
    • Warren, W.C.1
  • 33
    • 84875611490 scopus 로고    scopus 로고
    • Lack of dosage compensation accompanies the arrested stage of sex chromosome evolution in ostriches
    • Adolfsson, S. & Ellegren, H. Lack of dosage compensation accompanies the arrested stage of sex chromosome evolution in ostriches. Mol. Biol. Evol. 30, 806-810 (2013).
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 806-810
    • Adolfsson, S.1    Ellegren, H.2
  • 34
    • 58149337605 scopus 로고    scopus 로고
    • The chicken (Gallus gallus) Z chromosome contains at least three nonlinear evolutionary strata
    • Nam, K. & Ellegren, H. The chicken (Gallus gallus) Z chromosome contains at least three nonlinear evolutionary strata. Genetics 180, 1131-1136 (2008).
    • (2008) Genetics , vol.180 , pp. 1131-1136
    • Nam, K.1    Ellegren, H.2
  • 35
    • 0026515523 scopus 로고
    • Characterization and primary structure of the poly(C)-binding heterogeneous nuclear ribonucleoprotein complex K protein
    • Matunis, M. J., Michael, W. M. & Dreyfuss, G. Characterization and primary structure of the poly(C)-binding heterogeneous nuclear ribonucleoprotein complex K protein. Mol. Cell. Biol. 12, 164-171 (1992).
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 164-171
    • Matunis, M.J.1    Michael, W.M.2    Dreyfuss, G.3
  • 36
    • 84865407821 scopus 로고    scopus 로고
    • Targeted ubiquitination and degradation of G-protein-coupled receptor kinase 5 by the DDB1-CUL4 ubiquitin ligase complex
    • Wu, Z. et al. Targeted ubiquitination and degradation of G-protein-coupled receptor kinase 5 by the DDB1-CUL4 ubiquitin ligase complex. PLoS ONE 7, e43997 (2012).
    • (2012) PLoS ONE , vol.7
    • Wu, Z.1
  • 37
    • 70249086529 scopus 로고    scopus 로고
    • The avian Z-linked gene DMRT1 is required for male sex determination in the chicken
    • Smith, C. A. et al. The avian Z-linked gene DMRT1 is required for male sex determination in the chicken. Nature 461, 267-271 (2009).
    • (2009) Nature , vol.461 , pp. 267-271
    • Smith, C.A.1
  • 39
    • 84858707057 scopus 로고    scopus 로고
    • Sex-specific adaptation drives early sex chromosome evolution in Drosophila
    • Zhou, Q. & Bachtrog, D. Sex-specific adaptation drives early sex chromosome evolution in Drosophila. Science 337, 341-345 (2012).
    • (2012) Science , vol.337 , pp. 341-345
    • Zhou, Q.1    Bachtrog, D.2
  • 40
    • 2942744316 scopus 로고    scopus 로고
    • A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications
    • Kondrashov, F. A. & Koonin, E. V. A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications. Trends Genet. 20, 287-290 (2004).
    • (2004) Trends Genet. , vol.20 , pp. 287-290
    • Kondrashov, F.A.1    Koonin, E.V.2
  • 41
    • 84879795456 scopus 로고    scopus 로고
    • Cellular source and mechanisms of high transcriptome complexity in the mammalian testis
    • Soumillon, M. et al. Cellular source and mechanisms of high transcriptome complexity in the mammalian testis. Cell Rep. 3, 2179-2190 (2013).
    • (2013) Cell Rep. , vol.3 , pp. 2179-2190
    • Soumillon, M.1
  • 42
    • 72949093153 scopus 로고    scopus 로고
    • The multicopy gene Sly represses the sex chromosomes in the male mouse germline after meiosis
    • Cocquet, J. et al. The multicopy gene Sly represses the sex chromosomes in the male mouse germline after meiosis. PLoS Biol. 7, e1000244 (2009).
    • (2009) PLoS Biol , vol.7
    • Cocquet, J.1
  • 43
    • 68249102048 scopus 로고    scopus 로고
    • Evolution and survival on eutherian sex chromosomes
    • Wilson, M. A. & Makova, K. D. Evolution and survival on eutherian sex chromosomes. PLoS Genet. 5, e1000568 (2009).
    • (2009) PLoS Genet , vol.5
    • Wilson, M.A.1    Makova, K.D.2
  • 44
    • 31844440056 scopus 로고    scopus 로고
    • Fast accumulation of nonsynonymous mutations on the female-specific W chromosome in birds
    • Berlin, S. & Ellegren, H. Fast accumulation of nonsynonymous mutations on the female-specific W chromosome in birds. J. Mol. Evol. 62, 66-72 (2006).
    • (2006) J. Mol. Evol. , vol.62 , pp. 66-72
    • Berlin, S.1    Ellegren, H.2
  • 45
    • 84869137755 scopus 로고    scopus 로고
    • Sequencing of rhesus macaque y chromosome clarifies origins and evolution of the DAZ (Deleted in AZoospermia) genes
    • Hughes, J. F., Skaletsky, H. & Page, D. C. Sequencing of rhesus macaque Y chromosome clarifies origins and evolution of the DAZ (Deleted in AZoospermia) genes. Bioessays 34, 1035-1044 (2012).
    • (2012) Bioessays , vol.34 , pp. 1035-1044
    • Hughes, J.F.1    Skaletsky, H.2    Page, D.C.3
  • 46
    • 0012486875 scopus 로고
    • Model for evolution of y chromosomes and dosage compensation
    • Charlesworth, B. Model for evolution of Y chromosomes and dosage compensation. Proc. Natl Acad. Sci. USA 75, 5618-5622 (1978).
    • (1978) Proc. Natl Acad. Sci. USA , vol.75 , pp. 5618-5622
    • Charlesworth, B.1
  • 47
    • 78650938438 scopus 로고    scopus 로고
    • Identification of SOX3 as an XX male sex reversal gene in mice and humans
    • Sutton, E. et al. Identification of SOX3 as an XX male sex reversal gene in mice and humans. J. Clin. Invest. 121, 328-341 (2011).
    • (2011) J. Clin. Invest. , vol.121 , pp. 328-341
    • Sutton, E.1
  • 48
    • 77958117538 scopus 로고    scopus 로고
    • Strong purifying selection at genes escaping X chromosome inactivation
    • Park, C., Carrel, L. & Makova, K. D. Strong purifying selection at genes escaping X chromosome inactivation. Mol. Biol. Evol. 27, 2446-2450 (2010).
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2446-2450
    • Park, C.1    Carrel, L.2    Makova, K.D.3
  • 49
    • 84895908120 scopus 로고    scopus 로고
    • The evolution of lncRNA repertoires and expression patterns in tetrapods
    • Necsulea, A. et al. The evolution of lncRNA repertoires and expression patterns in tetrapods. Nature 505, 635-640 (2014).
    • (2014) Nature , vol.505 , pp. 635-640
    • Necsulea, A.1
  • 50
    • 80054976678 scopus 로고    scopus 로고
    • The evolution of gene expression levels in mammalian organs
    • Brawand, D. et al. The evolution of gene expression levels in mammalian organs. Nature 478, 343-348 (2011).
    • (2011) Nature , vol.478 , pp. 343-348
    • Brawand, D.1
  • 51
    • 84865727393 scopus 로고    scopus 로고
    • The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
    • Derrien, T. et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 22, 1775-1789 (2012).
    • (2012) Genome Res. , vol.22 , pp. 1775-1789
    • Derrien, T.1
  • 52
    • 70350023532 scopus 로고    scopus 로고
    • Improved base calling for the Illumina Genome Analyzer using machine learning strategies
    • Kircher, M., Stenzel, U. & Kelso, J. Improved base calling for the Illumina Genome Analyzer using machine learning strategies. Genome Biol. 10, R83 (2009).
    • (2009) Genome Biol. , vol.10
    • Kircher, M.1    Stenzel, U.2    Kelso, J.3
  • 53
    • 84860822732 scopus 로고    scopus 로고
    • Identification of avian W-linked contigs by short-read sequencing
    • Chen, N., Bellott, D. W., Page, D. C. & Clark, A. G. Identification of avian W-linked contigs by short-read sequencing. BMC Genomics 13, 183 (2012).
    • (2012) BMC Genomics , vol.13 , pp. 183
    • Chen, N.1    Bellott, D.W.2    Page, D.C.3    Clark, A.G.4
  • 54
    • 0035818548 scopus 로고    scopus 로고
    • Identification of five new genes on the y chromosome of Drosophila melanogaster
    • Carvalho, A. B.,Dobo, B. A., Vibranovski, M. D.&Clark, A. G. Identification of five new genes on the Y chromosome of Drosophila melanogaster. Proc. Natl Acad. Sci. USA 98, 13225-13230 (2001).
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 13225-13230
    • Carvalho, A.B.1    Dobo, B.A.2    Vibranovski, M.D.3    Clark, A.G.4
  • 55
    • 84887417974 scopus 로고    scopus 로고
    • Efficient identification of y chromosome sequences in the human and Drosophila genomes
    • Carvalho, A. B. & Clark, A. G. Efficient identification of Y chromosome sequences in the human and Drosophila genomes. Genome Res. 23, 1894-1907 (2013).
    • (2013) Genome Res. , vol.23 , pp. 1894-1907
    • Carvalho, A.B.1    Clark, A.G.2
  • 56
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 58
    • 84942887758 scopus 로고    scopus 로고
    • SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler
    • Luo, R. et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1, 18 (2012).
    • (2012) Gigascience , vol.1 , pp. 18
    • Luo, R.1
  • 59
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: Short oligonucleotide alignment program
    • Li, R., Li, Y., Kristiansen, K. & Wang, J. SOAP: short oligonucleotide alignment program. Bioinformatics 24, 713-714 (2008).
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 60
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnol. 29, 644-652 (2011).
    • (2011) Nature Biotechnol , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 61
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-theBLAST-like alignment tool
    • Kent,W. J.BLAT-theBLAST-like alignment tool.GenomeRes. 12, 656-664(2002).
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 62
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast andmemory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M.&Salzberg, S. L. Ultrafast andmemory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 63
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004).
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 64
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNAsequence assembly program
    • Huang, X.& Madan, A. CAP3: A DNAsequence assembly program. GenomeRes. 9, 868-877 (1999).
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 65
    • 66249148986 scopus 로고    scopus 로고
    • Lineage-specific biology revealed by a finished genome assembly of the mouse
    • Church, D. M. et al. Lineage-specific biology revealed by a finished genome assembly of the mouse. PLoS Biol. 7, e1000112 (2009).
    • (2009) PLoS Biol. , vol.7
    • Church, D.M.1
  • 66
    • 84865022311 scopus 로고    scopus 로고
    • Primer3-new capabilities and interfaces
    • Untergasser, A. et al. Primer3-new capabilities and interfaces. Nucleic Acids Res. 40, e115 (2012).
    • (2012) Nucleic Acids Res. , vol.40
    • Untergasser, A.1
  • 67
    • 23044471766 scopus 로고    scopus 로고
    • An algorithm for progressive multiple alignment of sequences with insertions
    • Lö ytynoja, A. & Goldman, N. An algorithm for progressive multiple alignment of sequences with insertions. Proc. Natl Acad. Sci. USA 102, 10557-10562 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 10557-10562
    • Löytynoja, A.1
  • 68
    • 77954403053 scopus 로고    scopus 로고
    • BMGE (Block Mapping and Gathering with Entropy): A new software for selection of phylogenetic informative regions from multiple sequence alignments
    • Criscuolo, A. & Gribaldo, S. BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments. BMC Evol. Biol. 10, 210 (2010).
    • (2010) BMC Evol. Biol. , vol.10 , pp. 210
    • Criscuolo, A.1    Gribaldo, S.2
  • 69
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon, S. et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307-321 (2010).
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1
  • 70
    • 84867662424 scopus 로고    scopus 로고
    • No evidence for a second evolutionary stratum during the early evolution of mammalian sex chromosomes
    • Katsura, Y. & Satta, Y. No evidence for a second evolutionary stratum during the early evolution of mammalian sex chromosomes. PLoS ONE 7, e45488 (2012).
    • (2012) PLoS ONE , vol.7
    • Katsura, Y.1    Satta, Y.2
  • 71
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang, Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13, 555-556 (1997).
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 72
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang, Z. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15, 568-573 (1998).
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 568-573
    • Yang, Z.1
  • 73
    • 31144465926 scopus 로고    scopus 로고
    • Hearing silence: Non-neutral evolution at synonymous sites in mammals
    • Chamary, J. V., Parmley, J. L.&Hurst, L. D.Hearing silence: non-neutral evolution at synonymous sites in mammals. Nature Rev. Genet. 7, 98-108 (2006).
    • (2006) Nature Rev. Genet. , vol.7 , pp. 98-108
    • Chamary, J.V.1    Parmley, J.L.2    Hurst, L.D.3
  • 74
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnol. 28, 511-515 (2010).
    • (2010) Nature Biotechnol , vol.28 , pp. 511-515
    • Trapnell, C.1
  • 75
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman, R. C. et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80 (2004).
    • (2004) Genome Biol. , vol.5
    • Gentleman, R.C.1
  • 76
    • 0032824210 scopus 로고    scopus 로고
    • Tyramide signal amplification (TSA)-FISH applied to mapping PCR-labeled probes less than 1 kb in size
    • Schriml, L. M. et al. Tyramide signal amplification (TSA)-FISH applied to mapping PCR-labeled probes less than 1 kb in size. Biotechniques 27, 608-613 (1999).
    • (1999) Biotechniques , vol.27 , pp. 608-613
    • Schriml, L.M.1
  • 77
    • 71049118748 scopus 로고    scopus 로고
    • Analysis of SINE and LINE repeat content of y chromosomes in the platypus, Ornithorhynchus anatinus
    • Kortschak, R. D., Tsend-Ayush, E. & Grutzner, F. Analysis of SINE and LINE repeat content of Y chromosomes in the platypus, Ornithorhynchus anatinus. Reprod. Fertil. Dev. 21, 964-975 (2009).
    • (2009) Reprod. Fertil. Dev. , vol.21 , pp. 964-975
    • Kortschak, R.D.1    Tsend-Ayush, E.2    Grutzner, F.3
  • 78
    • 61349167090 scopus 로고    scopus 로고
    • Evolution of X-degenerate y chromosome genes in greater apes: Conservation of gene content in human and gorilla, but not chimpanzee
    • Goto, H., Peng, L. & Makova, K. D. Evolution of X-degenerate Y chromosome genes in greater apes: conservation of gene content in human and gorilla, but not chimpanzee. J Mol Evol. 68, 134-144 (2009).
    • (2009) J Mol Evol. , vol.68 , pp. 134-144
    • Goto, H.1    Peng, L.2    Makova, K.D.3
  • 79
    • 0034739568 scopus 로고    scopus 로고
    • Evolution of the X-linked zinc finger gene andthe Y-linked zinc finger gene in primates
    • Kim, H. S.&Takenaka, O. Evolution of the X-linked zinc finger gene andthe Y-linked zinc finger gene in primates. Mol. Cells 10, 512-518 (2000).
    • (2000) Mol. Cells , vol.10 , pp. 512-518
    • Kim, H.S.1    Takenaka, O.2
  • 80
    • 0027306801 scopus 로고
    • Rapid sequence evolutionof the mammalian sex-determining gene SRY
    • Whitfield, L. S., Lovell-Badge, R.&Goodfellow, P. N.Rapid sequence evolutionof the mammalian sex-determining gene SRY. Nature 364, 713-715 (1993).
    • (1993) Nature , vol.364 , pp. 713-715
    • Whitfield, L.S.1    Lovell-Badge, R.2    Goodfellow, P.N.3
  • 81
    • 0036017385 scopus 로고    scopus 로고
    • SRY evolution in Cebidae (Platyrrhini: Primates)
    • Moreira, M. A. SRY evolution in Cebidae (Platyrrhini: Primates). J. Mol. Evol. 55, 92-103 (2002).
    • (2002) J. Mol. Evol. , vol.55 , pp. 92-103
    • Moreira, M.A.1
  • 82
    • 0025328296 scopus 로고
    • A gene mapping to the sex-determining region of the mouse y chromosome is a member of a novel family of embryonically expressed genes
    • Gubbay, J. et al. A gene mapping to the sex-determining region of the mouse Y chromosome is a member of a novel family of embryonically expressed genes. Nature 346, 245-250 (1990).
    • (1990) Nature , vol.346 , pp. 245-250
    • Gubbay, J.1
  • 83
    • 0027715823 scopus 로고
    • A Ychromosome gene family with RNA-binding protein homology: Candidates for the azoospermia factor AZF controlling human spermatogenesis
    • Ma, K. et al. A Y chromosome gene family with RNA-binding protein homology: candidates for the azoospermia factor AZF controlling human spermatogenesis. Cell 75, 1287-1295 (1993).
    • (1993) Cell , vol.75 , pp. 1287-1295
    • Ma, K.1
  • 84
    • 0028239599 scopus 로고
    • A mouse y chromosome gene encoded by a region essential for spermatogenesis and expression of male-specific minor histocompatibility antigens
    • Agulnik, A. I. et al. A mouse Y chromosome gene encoded by a region essential for spermatogenesis and expression of male-specific minor histocompatibility antigens. Hum. Mol. Genet. 3, 873-878 (1994).
    • (1994) Hum. Mol. Genet. , vol.3 , pp. 873-878
    • Agulnik, A.I.1
  • 85
    • 0025790212 scopus 로고
    • Homology of a candidate spermatogenic gene fromthe mouse y chromosome to the ubiquitin-activating enzyme E1
    • Mitchell, M. J. et al. Homology of a candidate spermatogenic gene fromthe mouse Y chromosome to the ubiquitin-activating enzyme E1. Nature 354, 483-486 (1991).
    • (1991) Nature , vol.354 , pp. 483-486
    • Mitchell, M.J.1
  • 86
    • 7344231093 scopus 로고    scopus 로고
    • Characterization of genes encoding translation initiation factor from X-inactivation and evolution
    • Ehrmann, I. E. et al. Characterization of genes encoding translation initiation factor from X-inactivation and evolution. Hum. Mol. Genet. 7, 1725-1737 (1998).
    • (1998) Hum. Mol. Genet. , vol.7 , pp. 1725-1737
    • Ehrmann, I.E.1
  • 87
    • 0037168586 scopus 로고    scopus 로고
    • Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
    • Strausberg, R. L. et al. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc. Natl Acad. Sci. USA 99, 16899-16903 (2002).
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 16899-16903
    • Strausberg, R.L.1
  • 88
    • 0038354779 scopus 로고    scopus 로고
    • Usp9y (ubiquitin-specific protease 9 gene on the Y) is associated with a functional promoter and encodes an intact open reading frame homologous to Usp9x that is under selective constraint
    • Hall, N. M. et al. Usp9y (ubiquitin-specific protease 9 gene on the Y) is associated with a functional promoter and encodes an intact open reading frame homologous to Usp9x that is under selective constraint. Mamm. Genome 14, 437-447 (2003).
    • (2003) Mamm. Genome , vol.14 , pp. 437-447
    • Hall, N.M.1
  • 89
    • 7344222765 scopus 로고    scopus 로고
    • The mouse y chromosome interval necessary for spermatogonial proliferation is gene dense with syntenic homology to the human AZFa region
    • Mazeyrat, S. et al. The mouse Y chromosome interval necessary for spermatogonial proliferation is gene dense with syntenic homology to the human AZFa region. Hum. Mol. Genet. 7, 1713-1724 (1998).
    • (1998) Hum. Mol. Genet. , vol.7 , pp. 1713-1724
    • Mazeyrat, S.1
  • 90
    • 0024550569 scopus 로고
    • The sex-determining region of the mouse y chromosome encodes a protein with a highly acidic domain and 13 zinc fingers
    • Mardon, G. & Page, D. C. The sex-determining region of the mouse Y chromosome encodes a protein with a highly acidic domain and 13 zinc fingers. Cell 56, 765-770 (1989).
    • (1989) Cell , vol.56 , pp. 765-770
    • Mardon, G.1    Page, D.C.2
  • 91
    • 33644752187 scopus 로고    scopus 로고
    • Identification of novel y chromosome encoded transcripts by testis transcriptome analysis of mice with deletions of the y chromosome long arm
    • Touré, A. et al. Identification of novel Y chromosome encoded transcripts by testis transcriptome analysis of mice with deletions of the Y chromosome long arm. Genome Biol. 6, R102 (2005).
    • (2005) Genome Biol. , vol.6
    • Touré, A.1
  • 92
    • 0345118938 scopus 로고    scopus 로고
    • A protein encoded by a member of the multicopy Ssty gene family located on the long arm of the mouse y chromosome is expressed during sperm development
    • Touré, A. et al. A protein encoded by a member of the multicopy Ssty gene family located on the long arm of the mouse Y chromosome is expressed during sperm development. Genomics 83, 140-147 (2004).
    • (2004) Genomics , vol.83 , pp. 140-147
    • Touré, A.1


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