메뉴 건너뛰기




Volumn 24, Issue 1, 2007, Pages 6-9

Lack of resolution in the animal phylogeny: Closely spaced cladogeneses or undetected systematic errors?

Author keywords

Animal evolution; Nonphylogenetic signal; Phylogenetic resolution; Phylogenomics; Systematic error

Indexed keywords

ARTICLE; CLADOGENESIS; MEDICAL RESEARCH; NONHUMAN; PHYLOGENY; SIGNAL TRANSDUCTION; SPECIES;

EID: 33845908745     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msl137     Document Type: Article
Times cited : (113)

References (38)
  • 1
    • 0029191637 scopus 로고
    • Phylogeny of whales: Dependence of the inference on species sampling
    • Adachi J, Hasegawa M. 1995. Phylogeny of whales: dependence of the inference on species sampling. Mol Biol Evol. 12:177-179.
    • (1995) Mol Biol Evol , vol.12 , pp. 177-179
    • Adachi, J.1    Hasegawa, M.2
  • 3
    • 33749595631 scopus 로고    scopus 로고
    • A bayesian compound stochastic process for modelling non-stationary and non-homogeneous sequence evolution
    • Blanquart S, Lartillot N. 2006. A bayesian compound stochastic process for modelling non-stationary and non-homogeneous sequence evolution. Mol Biol Evol. 23:2058-2071.
    • (2006) Mol Biol Evol , vol.23 , pp. 2058-2071
    • Blanquart, S.1    Lartillot, N.2
  • 4
    • 33644536713 scopus 로고    scopus 로고
    • Tunicates and not cephalochordates are the closest living relatives of vertebrates
    • Delsuc F, Brinkmann H, Chourrout D, Philippe H. 2006. Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature. 439:965-968.
    • (2006) Nature , vol.439 , pp. 965-968
    • Delsuc, F.1    Brinkmann, H.2    Chourrout, D.3    Philippe, H.4
  • 5
    • 17744394753 scopus 로고    scopus 로고
    • Phylogenomics and the reconstruction of the tree of life
    • Delsuc F, Brinkmann H, Philippe H. 2005. Phylogenomics and the reconstruction of the tree of life. Nat Rev Genet. 6:361-375.
    • (2005) Nat Rev Genet , vol.6 , pp. 361-375
    • Delsuc, F.1    Brinkmann, H.2    Philippe, H.3
  • 7
    • 0028790653 scopus 로고
    • Inferring phylogenies from DNA sequences of unequal base compositions
    • Galtier N, Gouy M. 1995. Inferring phylogenies from DNA sequences of unequal base compositions. Proc Natl Acad Sci USA. 92:11317-11321.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 11317-11321
    • Galtier, N.1    Gouy, M.2
  • 9
    • 0032025857 scopus 로고    scopus 로고
    • Is it better to add taxa or characters to a difficult phylogenetic problem?
    • Graybeal A. 1998. Is it better to add taxa or characters to a difficult phylogenetic problem? Syst Biol. 47:9-17.
    • (1998) Syst Biol , vol.47 , pp. 9-17
    • Graybeal, A.1
  • 10
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 11
    • 3242690862 scopus 로고    scopus 로고
    • The new view of animal phylogeny
    • Halanych KM. 2004. The new view of animal phylogeny. Annu Rev Ecol Evol Syst. 35:229-256.
    • (2004) Annu Rev Ecol Evol Syst , vol.35 , pp. 229-256
    • Halanych, K.M.1
  • 12
    • 33747339757 scopus 로고    scopus 로고
    • Resolution of phylogenetic conflict in large data sets by increased taxon sampling
    • Hedtke SM, Townsend TM, Hillis DM. 2006. Resolution of phylogenetic conflict in large data sets by increased taxon sampling. Syst Biol. 55:522-529.
    • (2006) Syst Biol , vol.55 , pp. 522-529
    • Hedtke, S.M.1    Townsend, T.M.2    Hillis, D.M.3
  • 13
    • 0000084234 scopus 로고
    • A framework for the quantitative study of evolutionary trees
    • Hendy MD, Penny D. 1989. A framework for the quantitative study of evolutionary trees. Syst Zool. 38:297-309.
    • (1989) Syst Zool , vol.38 , pp. 297-309
    • Hendy, M.D.1    Penny, D.2
  • 14
    • 0029834661 scopus 로고    scopus 로고
    • Inferring complex phylogenies
    • Hillis DM. 1996. Inferring complex phylogenies. Nature. 383:130-131.
    • (1996) Nature , vol.383 , pp. 130-131
    • Hillis, D.M.1
  • 15
    • 4644252702 scopus 로고    scopus 로고
    • Tracing the decay of the historical signal in biological sequence data
    • Ho SY, Jermiin L. 2004. Tracing the decay of the historical signal in biological sequence data. Syst Biol. 53:623-637.
    • (2004) Syst Biol , vol.53 , pp. 623-637
    • Ho, S.Y.1    Jermiin, L.2
  • 16
    • 28944447963 scopus 로고    scopus 로고
    • Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood
    • Hordijk W, Gascuel O. 2005. Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood. Bioinformatics. 21:4338-4347.
    • (2005) Bioinformatics , vol.21 , pp. 4338-4347
    • Hordijk, W.1    Gascuel, O.2
  • 17
    • 13444259388 scopus 로고    scopus 로고
    • TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
    • Jobb G, von Haeseler A, Strimmer K. 2004. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol. 4:18.
    • (2004) BMC Evol Biol , vol.4 , pp. 18
    • Jobb, G.1    von Haeseler, A.2    Strimmer, K.3
  • 18
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • Lanave C, Preparata G, Saccone C, Serio G. 1984. A new method for calculating evolutionary substitution rates. J Mol Evol. 20:86-93.
    • (1984) J Mol Evol , vol.20 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3    Serio, G.4
  • 20
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
    • Lartillot N, Philippe H. 2004. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol Biol Evol. 21:1095-1109.
    • (2004) Mol Biol Evol , vol.21 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 22
    • 33746545695 scopus 로고    scopus 로고
    • Marletaz F, Martin E, Perez Y, et al. (12 co-authors). 2006. Chaetognath phylogenomics: a protostome with deuterostome-like development. Curr Biol. 16:R577-R578.
    • Marletaz F, Martin E, Perez Y, et al. (12 co-authors). 2006. Chaetognath phylogenomics: a protostome with deuterostome-like development. Curr Biol. 16:R577-R578.
  • 23
    • 0036699004 scopus 로고    scopus 로고
    • Perils of paralogy: Using HSP70 genes for inferring organismal phylogenies
    • Martin AP, Burg TM. 2002. Perils of paralogy: using HSP70 genes for inferring organismal phylogenies. Syst Biol. 51:570-587.
    • (2002) Syst Biol , vol.51 , pp. 570-587
    • Martin, A.P.1    Burg, T.M.2
  • 25
    • 0023498406 scopus 로고
    • Earliest phylogenetic branching: Comparing rRNA-based evolutionary trees inferred with various techniques
    • Olsen G. 1987. Earliest phylogenetic branching: comparing rRNA-based evolutionary trees inferred with various techniques. Cold Spring Harb Symp Quant Biol. LII:825-837.
    • (1987) Cold Spring Harb Symp Quant Biol , vol.52 , pp. 825-837
    • Olsen, G.1
  • 27
    • 17744386162 scopus 로고    scopus 로고
    • Multigene analyses of bilaterian animals corroborate the monophyly of ecdysozoa, lophotrochozoa, and protostomia
    • Philippe H, Lartillot N, Brinkmann H. 2005. Multigene analyses of bilaterian animals corroborate the monophyly of ecdysozoa, lophotrochozoa, and protostomia. Mol Biol Evol. 22:1246-1253.
    • (2005) Mol Biol Evol , vol.22 , pp. 1246-1253
    • Philippe, H.1    Lartillot, N.2    Brinkmann, H.3
  • 28
    • 33749516796 scopus 로고    scopus 로고
    • Large-scale sequencing and the new animal phylogeny
    • Philippe H, Telford MJ. 2006. Large-scale sequencing and the new animal phylogeny. Trends Ecol Evol. 21:614-620.
    • (2006) Trends Ecol Evol , vol.21 , pp. 614-620
    • Philippe, H.1    Telford, M.J.2
  • 31
    • 17744398025 scopus 로고    scopus 로고
    • More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
    • Rokas A, Carroll SB. 2005. More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. Mol Biol Evol. 22:1337-1344.
    • (2005) Mol Biol Evol , vol.22 , pp. 1337-1344
    • Rokas, A.1    Carroll, S.B.2
  • 32
    • 29344441657 scopus 로고    scopus 로고
    • Animal evolution and the molecular signature of radiations compressed in time
    • Rokas A, Kruger D, Carroll SB. 2005. Animal evolution and the molecular signature of radiations compressed in time. Science. 310:1933-1938.
    • (2005) Science , vol.310 , pp. 1933-1938
    • Rokas, A.1    Kruger, D.2    Carroll, S.B.3
  • 33
    • 0035845536 scopus 로고    scopus 로고
    • Incomplete taxon sampling is not a problem for phylogenetic inference
    • Rosenberg MS, Kumar S. 2001. Incomplete taxon sampling is not a problem for phylogenetic inference. Proc Natl Acad Sci USA. 98:10751-10756.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 10751-10756
    • Rosenberg, M.S.1    Kumar, S.2
  • 34
    • 0031986279 scopus 로고    scopus 로고
    • Modeling the covarion hypothesis of nucleotide substitution
    • Tuffley C, Steel M. 1998. Modeling the covarion hypothesis of nucleotide substitution. Math Biosci. 147:63-91.
    • (1998) Math Biosci , vol.147 , pp. 63-91
    • Tuffley, C.1    Steel, M.2
  • 35
    • 0001867808 scopus 로고
    • Extinction, sampling, and molecular phylogenetics
    • Novacek MJ, Wheeler QD, editors, New York: Columbia University Press. p
    • Wheeler WC. 1992. Extinction, sampling, and molecular phylogenetics. In: Novacek MJ, Wheeler QD, editors. Extinction and phylogeny. New York: Columbia University Press. p. 205-215.
    • (1992) Extinction and phylogeny , pp. 205-215
    • Wheeler, W.C.1
  • 36
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan S, Goldman N. 2001. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol. 18:691-699.
    • (2001) Mol Biol Evol , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 37
    • 0035339920 scopus 로고    scopus 로고
    • Molecular phylogenetics: State-of-the-art methods for looking into the past
    • Whelan S, Lio P, Goldman N. 2001. Molecular phylogenetics: state-of-the-art methods for looking into the past. Trends Genet. 17:262-272.
    • (2001) Trends Genet , vol.17 , pp. 262-272
    • Whelan, S.1    Lio, P.2    Goldman, N.3
  • 38
    • 0027132974 scopus 로고
    • Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • Yang Z. 1993. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol Biol Evol. 10:1396-1401.
    • (1993) Mol Biol Evol , vol.10 , pp. 1396-1401
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.