-
2
-
-
34848891537
-
Accumulation and bioavailability of dietary carotenoids in vegetable crops
-
Kopsell, D. A. & Kopsell, D. E. Accumulation and bioavailability of dietary carotenoids in vegetable crops. Trends Plant Sci. 11, 499-507 (2006).
-
(2006)
Trends Plant Sci.
, vol.11
, pp. 499-507
-
-
Kopsell, D.A.1
Kopsell, D.E.2
-
3
-
-
33745218882
-
Biology and biochemistry of glucosinolates
-
Halkier, B. A. & Gershenzon, J. Biology and biochemistry of glucosinolates. Annu. Rev. Plant Biol. 57, 303-333 (2006).
-
(2006)
Annu. Rev. Plant Biol.
, vol.57
, pp. 303-333
-
-
Halkier, B.A.1
Gershenzon, J.2
-
4
-
-
68949173808
-
3,3'-diindolylmethane induction of p75NTR-dependent cell death via the p38 mitogen-activated protein kinase pathway in prostate cancer cells
-
Phila
-
Khwaja, F. S., Wynne, S., Posey, I. & Djakiew, D. 3,3'-diindolylmethane induction of p75NTR-dependent cell death via the p38 mitogen-activated protein kinase pathway in prostate cancer cells. Cancer Prev. Res. (Phila) 2, 566-571 (2009).
-
(2009)
Cancer Prev. Res.
, vol.2
, pp. 566-571
-
-
Khwaja, F.S.1
Wynne, S.2
Posey, I.3
Djakiew, D.4
-
5
-
-
77951730125
-
Sulforaphane, a dietary component of broccoli/broccoli sprouts, inhibits breast cancer stem cells
-
Li, Y. et al. Sulforaphane, a dietary component of broccoli/broccoli sprouts, inhibits breast cancer stem cells. Clin. Cancer Res. 16, 2580-2590 (2010).
-
(2010)
Clin. Cancer Res.
, vol.16
, pp. 2580-2590
-
-
Li, Y.1
-
6
-
-
34047136753
-
Cruciferous vegetables and human cancer risk: Epidemiologic evidence and mechanistic basis
-
Higdon, J. V., Delage, B., Williams, D. E. & Dashwood, R. H. Cruciferous vegetables and human cancer risk: epidemiologic evidence and mechanistic basis. Pharmacol Res. 55, 224-236 (2007).
-
(2007)
Pharmacol Res.
, vol.55
, pp. 224-236
-
-
Higdon, J.V.1
Delage, B.2
Williams, D.E.3
Dashwood, R.H.4
-
7
-
-
33745886901
-
Brassicaceae: Species checklist and database on CD-Rom
-
Warwick, S. I., Francis, A. & Al-Shehbaz, I. A. Brassicaceae: species checklist and database on CD-Rom. Pl. Syst. Evol. 259, 249-258 (2006).
-
(2006)
Pl. Syst. Evol.
, vol.259
, pp. 249-258
-
-
Warwick, S.I.1
Francis, A.2
Al-Shehbaz, I.A.3
-
8
-
-
0000150298
-
Genome analysis in Brassica with special reference to the experimental formation of B. Napus and peculiar mode of fertilication
-
Nagaharu, U. Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilication. Jap. J. Bot. 7, 389-452 (1935).
-
(1935)
Jap. J. Bot.
, vol.7
, pp. 389-452
-
-
Nagaharu, U.1
-
9
-
-
0037468758
-
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
-
Bowers, J. E., Chapman, B. A., Rong, J. & Paterson, A. H. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422, 433-438 (2003).
-
(2003)
Nature
, vol.422
, pp. 433-438
-
-
Bowers, J.E.1
Chapman, B.A.2
Rong, J.3
Paterson, A.H.4
-
10
-
-
79955630390
-
Ancestral polyploidy in seed plants and angiosperms
-
Jiao, Y. et al. Ancestral polyploidy in seed plants and angiosperms. Nature 473, 97-100 (2011).
-
(2011)
Nature
, vol.473
, pp. 97-100
-
-
Jiao, Y.1
-
11
-
-
80053386792
-
The genome of the mesopolyploid crop species Brassica rapa
-
Wang, X. et al. The genome of the mesopolyploid crop species Brassica rapa. Nat. Genet. 43, 1035-1039 (2011).
-
(2011)
Nat. Genet.
, vol.43
, pp. 1035-1039
-
-
Wang, X.1
-
12
-
-
17844379449
-
Chromosome triplication found across the tribe Brassiceae
-
Lysak, M. A., Koch, M. A., Pecinka, A. & Schubert, I. Chromosome triplication found across the tribe Brassiceae. Genome Res. 15, 516-525 (2005).
-
(2005)
Genome Res.
, vol.15
, pp. 516-525
-
-
Lysak, M.A.1
Koch, M.A.2
Pecinka, A.3
Schubert, I.4
-
13
-
-
84879482267
-
Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa
-
Cheng, F. et al. Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa. Plant Cell 25, 1541-1554 (2013).
-
(2013)
Plant Cell
, vol.25
, pp. 1541-1554
-
-
Cheng, F.1
-
14
-
-
33745467604
-
Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy
-
Town, C. D. et al. Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy. Plant Cell 18, 1348-1359 (2006).
-
(2006)
Plant Cell
, vol.18
, pp. 1348-1359
-
-
Town, C.D.1
-
15
-
-
71349085860
-
Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication
-
Mun, J. H. et al. Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication. Genome Biol. 10, R111 (2009).
-
(2009)
Genome Biol.
, vol.10 R111
-
-
Mun, J.H.1
-
16
-
-
84866851788
-
Construction and analysis of a high-density genetic linkage map in cabbage
-
Brassica oleracea L. var. capitata
-
Wang, W. et al. Construction and analysis of a high-density genetic linkage map in cabbage (Brassica oleracea L. var. capitata). BMC Genomics 13, 523 (2012).
-
(2012)
BMC Genomics
, vol.13
, pp. 523
-
-
Wang, W.1
-
17
-
-
80053342059
-
A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations
-
Wang, X. et al. A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations. BMC Genomics 12, 470 (2011).
-
(2011)
BMC Genomics
, vol.12
, pp. 470
-
-
Wang, X.1
-
18
-
-
79961199174
-
Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing
-
Bancroft, I. et al. Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing. Nat. Biotechnol. 29, 762-766 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 762-766
-
-
Bancroft, I.1
-
19
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome and Initiative
-
Arabidopsis Genome and Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815 (2000).
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
20
-
-
33751014556
-
The ABC's of comparative genomics in the Brassicaceae: Building blocks of crucifer genomes
-
Schranz, M. E., Lysak, M. A. & Mitchell-Olds, T. The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes. Trends Plant Sci. 11, 535-542 (2006).
-
(2006)
Trends Plant Sci.
, vol.11
, pp. 535-542
-
-
Schranz, M.E.1
Lysak, M.A.2
Mitchell, O.T.3
-
21
-
-
77954741256
-
Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs
-
Woodhouse, M. R. et al. Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs. PLoS Biol. 8, e1000409 (2010).
-
(2010)
PLoS Biol.
, vol.8
-
-
Woodhouse, M.R.1
-
22
-
-
0036061848
-
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
-
Devos, K. M., Brown, J. K. & Bennetzen, J. L. Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res. 12, 1075-1079 (2002).
-
(2002)
Genome Res.
, vol.12
, pp. 1075-1079
-
-
Devos, K.M.1
Brown, J.K.2
Bennetzen, J.L.3
-
23
-
-
35348901902
-
Ancestral chromosomal blocks are triplicated in Brassiceae species with varying chromosome number and genome size
-
Lysak, M. A., Cheung, K., Kitschke, M. & Bures, P. Ancestral chromosomal blocks are triplicated in Brassiceae species with varying chromosome number and genome size. Plant Physiol. 145, 402-410 (2007).
-
(2007)
Plant Physiol.
, vol.145
, pp. 402-410
-
-
Lysak, M.A.1
Cheung, K.2
Kitschke, M.3
Bures, P.4
-
24
-
-
41549133928
-
Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: Homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes
-
Panjabi, P. et al. Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes. BMC Genomics 9, 113 (2008).
-
(2008)
BMC Genomics
, vol.9
, pp. 113
-
-
Panjabi, P.1
-
25
-
-
31544442199
-
Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana
-
Parkin, I. A. et al. Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana. Genetics 171, 765-781 (2005).
-
(2005)
Genetics
, vol.171
, pp. 765-781
-
-
Parkin, I.A.1
-
26
-
-
84873386377
-
The genome of the pear
-
Pyrus bretschneideri Rehd
-
Wu, J. et al. The genome of the pear (Pyrus bretschneideri Rehd.). Genome Res. 23, 396-408 (2012).
-
(2012)
Genome Res.
, vol.23
, pp. 396-408
-
-
Wu, J.1
-
27
-
-
84863693752
-
The tomato genome sequence provides insights into fleshy fruit evolution
-
The Tomato Genome Consortium
-
The Tomato Genome Consortium. The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485, 635-641 (2012).
-
(2012)
Nature
, vol.485
, pp. 635-641
-
-
-
28
-
-
69949128558
-
Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence
-
Cheung, F. et al. Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence. Plant Cell 21, 1912-1928 (2009).
-
(2009)
Plant Cell
, vol.21
, pp. 1912-1928
-
-
Cheung, F.1
-
29
-
-
67651039811
-
Bias in plant gene content following different sorts of duplication: Tandem, whole-genome, segmental, or by transposition
-
Freeling, M. Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition. Annu. Rev. Plant Biol. 60, 433-453 (2009).
-
(2009)
Annu. Rev. Plant Biol.
, vol.60
, pp. 433-453
-
-
Freeling, M.1
-
30
-
-
77952302158
-
The collapse of gene complement following whole genome duplication
-
Sankoff, D., Zheng, C. & Zhu, Q. The collapse of gene complement following whole genome duplication. BMC Genomics 11, 313 (2010).
-
(2010)
BMC Genomics
, vol.11
, pp. 313
-
-
Sankoff, D.1
Zheng, C.2
Zhu, Q.3
-
31
-
-
84856480832
-
Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids
-
Woodhouse, M. R., Tang, H. & Freeling, M. Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids. Plant Cell 23, 4241-4253 (2011).
-
(2011)
Plant Cell
, vol.23
, pp. 4241-4253
-
-
Woodhouse, M.R.1
Tang, H.2
Freeling, M.3
-
32
-
-
84864467620
-
Preferential retention of circadian clock genes during diploidization following whole genome triplication in Brassica rapa
-
Lou, P. et al. Preferential retention of circadian clock genes during diploidization following whole genome triplication in Brassica rapa. Plant Cell 24, 2415-2426 (2012).
-
(2012)
Plant Cell
, vol.24
, pp. 2415-2426
-
-
Lou, P.1
-
33
-
-
57749100022
-
Evolutionary genetics of genome merger and doubling in plants
-
Doyle, J. J. et al. Evolutionary genetics of genome merger and doubling in plants. Annu. Rev. Genet. 42, 443-461 (2008).
-
(2008)
Annu. Rev. Genet.
, vol.42
, pp. 443-461
-
-
Doyle, J.J.1
-
34
-
-
79952301890
-
Seventy million years of concerted evolution of a homoeologous chromosome pair, in parallel, in major Poaceae lineages
-
Wang, X., Tang, H. & Paterson, A. H. Seventy million years of concerted evolution of a homoeologous chromosome pair, in parallel, in major Poaceae lineages. Plant Cell 23, 27-37 (2011).
-
(2011)
Plant Cell
, vol.23
, pp. 27-37
-
-
Wang, X.1
Tang, H.2
Paterson, A.H.3
-
35
-
-
84866843094
-
Alternative splicing in plants-coming of age
-
Syed, N. H., Kalyna, M., Marquez, Y., Barta, A. & Brown, J. W. Alternative splicing in plants-coming of age. Trends Plant Sci. 17, 616-623 (2012).
-
(2012)
Trends Plant Sci.
, vol.17
, pp. 616-623
-
-
Syed, N.H.1
Kalyna, M.2
Marquez, Y.3
Barta, A.4
Brown, J.W.5
-
36
-
-
80052223272
-
An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming
-
Gabut, M. et al. An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming. Cell 147, 132-146 (2011).
-
(2011)
Cell
, vol.147
, pp. 132-146
-
-
Gabut, M.1
-
37
-
-
77953788021
-
Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis
-
Zhang, P. G., Huang, S. Z., Pin, A. L. & Adams, K. L. Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis. Mol. Biol. Evol. 27, 1686-1697 (2010).
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 1686-1697
-
-
Zhang, P.G.1
Huang, S.Z.2
Pin, A.L.3
Adams, K.L.4
-
38
-
-
74949084336
-
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
-
Filichkin, S. A. et al. Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res. 20, 45-58 (2010).
-
(2010)
Genome Res.
, vol.20
, pp. 45-58
-
-
Filichkin, S.A.1
-
39
-
-
77955708329
-
Survey of glucosinolate variation in leaves of Brassica rapa crops
-
Yang, B. & Quiros, C. F. Survey of glucosinolate variation in leaves of Brassica rapa crops. Genet. Res. Crop Evol. 57, 1079-1089 (2010).
-
(2010)
Genet. Res. Crop Evol.
, vol.57
, pp. 1079-1089
-
-
Yang, B.1
Quiros, C.F.2
-
40
-
-
58149337567
-
Methylthioalkylmalate synthases:Genetics, ecology and evolution
-
Benderoth, M., Pfalz, M. & Kroymann, J. Methylthioalkylmalate synthases: genetics, ecology and evolution. Phytochem. Rev. 8, 255-268 (2009).
-
(2009)
Phytochem. Rev.
, vol.8
, pp. 255-268
-
-
Benderoth, M.1
Pfalz, M.2
Kroymann, J.3
-
41
-
-
33745159638
-
Positive selection driving diversification in plant secondary metabolism
-
Benderoth, M. et al. Positive selection driving diversification in plant secondary metabolism. Proc. Natl. Acad. Sci. USA 103, 9118-9123 (2006).
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 9118-9123
-
-
Benderoth, M.1
-
42
-
-
34250663450
-
MAM3 catalyses the formation of all aliphatic glucosinolate chain lengths in Arabidopsis
-
Textor, S., de Kraker, J. W., Hause, B., Gershenzon, J. & Tokuhisa, J. G. MAM3 catalyses the formation of all aliphatic glucosinolate chain lengths in Arabidopsis. Plant Physiol. 144, 60-71 (2007).
-
(2007)
Plant Physiol.
, vol.144
, pp. 60-71
-
-
Textor, S.1
De Kraker, J.W.2
Hause, B.3
Gershenzon, J.4
Tokuhisa, J.G.5
-
43
-
-
53149150939
-
Processing (blanching, boiling, steaming) effects on the content of glucosinolates and antioxidant related parameters in cauliflower
-
Brassica oleracea L. ssp. botrytis
-
Volden, J. et al. Processing (blanching, boiling, steaming) effects on the content of glucosinolates and antioxidant related parameters in cauliflower (Brassica oleracea L. ssp. botrytis). LWT Food Sci. Technol. 42, 63-73 (2009).
-
(2009)
LWT Food Sci. Technol.
, vol.42
, pp. 63-73
-
-
Volden, J.1
-
44
-
-
80052888450
-
Glucosinolate biosynthetic genes in Brassica rapa
-
Wang, H. et al. Glucosinolate biosynthetic genes in Brassica rapa. Gene 487, 135-142 (2011).
-
(2011)
Gene
, vol.487
, pp. 135-142
-
-
Wang, H.1
-
45
-
-
75949117260
-
Molecular mechanisms of polyploidy and hybrid vigour
-
Chen, Z. J. Molecular mechanisms of polyploidy and hybrid vigour. Trends Plant Sci. 15, 57-71 (2010).
-
(2010)
Trends Plant Sci.
, vol.15
, pp. 57-71
-
-
Chen, Z.J.1
-
46
-
-
79952744855
-
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
-
Schnable, J. C., Springer, N. M. & Freeling, M. Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc. Natl. Acad. Sci. USA 108, 4069-4074 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 4069-4074
-
-
Schnable, J.C.1
Springer, N.M.2
Freeling, M.3
-
47
-
-
3242889577
-
AUGUSTUS:A web server for gene finding in eukaryotes
-
Stanke, M., Steinkamp, R., Waack, S. & Morgenstern, B. AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res. 32, W309-W312 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Stanke, M.1
Steinkamp, R.2
Waack, S.3
Morgenstern, B.4
-
48
-
-
8844252293
-
TigrScan and Glimmer HMM:Two open source ab initio eukaryotic gene-finders
-
Majoros, W. H., Pertea, M. & Salzberg, S. L. TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. Bioinformatics 20, 2878-2879 (2004).
-
(2004)
Bioinformatics
, vol.20
, pp. 2878-2879
-
-
Majoros, W.H.1
Pertea, M.2
Salzberg, S.L.3
-
49
-
-
2442713832
-
Gene wise and genomewise
-
Birney, E., Clamp, M. & Durbin, R. GeneWise and Genomewise. Genome Res. 14, 988-995 (2004).
-
(2004)
Genome Res.
, vol.14
, pp. 988-995
-
-
Birney, E.1
Clamp, M.2
Durbin, R.3
-
50
-
-
33644554839
-
PASA-A program for automated protein NMR backbone signal assignment by pattern-filtering approach
-
Xu, Y., Wang, X., Yang, J., Vaynberg, J. & Qin, J. PASA-a program for automated protein NMR backbone signal assignment by pattern-filtering approach. J. Biomol. NMR 34, 41-56 (2006).
-
(2006)
J. Biomol. NMR
, vol.34
, pp. 41-56
-
-
Xu, Y.1
Wang, X.2
Yang, J.3
Vaynberg, J.4
Qin, J.5
-
51
-
-
34147180390
-
Creating a honey bee consensus gene set
-
Elsik, C. G. et al. Creating a honey bee consensus gene set. Genome Biol. 8, R13 (2007).
-
(2007)
Genome Biol.
, vol.8 R13
-
-
Elsik, C.G.1
-
52
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe, T. M. & Eddy, S. R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964 (1997).
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
53
-
-
65549111754
-
Infernal 1.0: Inference of RNA alignments
-
Nawrocki, E. P., Kolbe, D. L. & Eddy, S. R. Infernal 1.0: inference of RNA alignments. Bioinformatics 25, 1335-1337 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1335-1337
-
-
Nawrocki, E.P.1
Kolbe, D.L.2
Eddy, S.R.3
-
54
-
-
0037433054
-
LTR-STRUC: A novel search and identification program for LTR retrotransposons
-
McCarthy, E. M. & McDonald, J. F. LTR-STRUC: a novel search and identification program for LTR retrotransposons. Bioinformatics 19, 362-367 (2003).
-
(2003)
Bioinformatics
, vol.19
, pp. 362-367
-
-
McCarthy, E.M.1
McDonald, J.F.2
-
55
-
-
2342466982
-
Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice
-
Ma, J., Devos, K. M. & Bennetzen, J. L. Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res. 14, 860-869 (2004).
-
(2004)
Genome Res.
, vol.14
, pp. 860-869
-
-
Ma, J.1
Devos, K.M.2
Bennetzen, J.L.3
-
56
-
-
33845765223
-
The transposable element landscape of the model legume Lotus japonicus
-
Holligan, D., Zhang, X., Jiang, N., Pritham, E. J. & Wessler, S. R. The transposable element landscape of the model legume Lotus japonicus. Genetics 174, 2215-2228 (2006).
-
(2006)
Genetics
, vol.174
, pp. 2215-2228
-
-
Holligan, D.1
Zhang, X.2
Jiang, N.3
Pritham, E.J.4
Wessler, S.R.5
-
57
-
-
69149101693
-
Structure-based discovery and description of plant and animal Helitrons
-
Yang, L. & Bennetzen, J. L. Structure-based discovery and description of plant and animal Helitrons. Proc. Natl Acad. Sci. USA 106, 12832-12837 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 12832-12837
-
-
Yang, L.1
Bennetzen, J.L.2
-
58
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker, T. et al. A unified classification system for eukaryotic transposable elements. Nat. Rev. Genet. 8, 973-982 (2007).
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 973-982
-
-
Wicker, T.1
-
60
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li, L., Stoeckert, Jr C. J. & Roos, D. S. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189 (2003).
-
(2003)
Genome Res.
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert Jr., C.J.2
Roos, D.S.3
-
61
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin, M. A. et al. Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948 (2007).
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
-
62
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K. et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739 (2011).
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
-
63
-
-
68049139485
-
Estimating maximum likelihood phylogenies with PhyML
-
Guindon, S., Delsuc, F., Dufayard, J. F. & Gascuel, O. Estimating maximum likelihood phylogenies with PhyML. Methods Mol. Biol. 537, 113-137 (2009).
-
(2009)
Methods Mol. Biol.
, vol.537
, pp. 113-137
-
-
Guindon, S.1
Delsuc, F.2
Dufayard, J.F.3
Gascuel, O.4
-
64
-
-
84859885816
-
Differential gene and transcript expression analysis of RNAseq experiments with TopHat and Cufflinks
-
Trapnell, C. et al. Differential gene and transcript expression analysis of RNAseq experiments with TopHat and Cufflinks. Nat. Protoc. 7, 562-578 (2012).
-
(2012)
Nat. Protoc.
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
-
65
-
-
84871965646
-
The fate of duplicated genes in a polyploid plant genome
-
Roulin, A. et al. The fate of duplicated genes in a polyploid plant genome. Plant J. 73, 143-153 (2012).
-
(2012)
Plant J.
, vol.73
, pp. 143-153
-
-
Roulin, A.1
-
66
-
-
43249115146
-
Testing the ratio of two poisson rates
-
Gu, K., Ng, H. K., Tang, M. L. & Schucany, W. R. Testing the ratio of two poisson rates. Biom. J. 50, 283-298 (2008).
-
(2008)
Biom. J.
, vol.50
, pp. 283-298
-
-
Gu, K.1
Ng, H.K.2
Tang, M.L.3
Schucany, W.R.4
-
67
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Statist. Soc. Ser. 57, 289-300 (1995).
-
(1995)
J. Roy. Statist. Soc. Ser.
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
68
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120 (1980).
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
69
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M. & Kumar, S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599 (2007).
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
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