메뉴 건너뛰기




Volumn 5, Issue , 2014, Pages

The brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

(86)  Liu, Shengyi a   Liu, Yumei a   Yang, Xinhua b   Tong, Chaobo a   Edwards, David c   Parkin, Isobel A P d   Zhao, Meixia a,e   Ma, Jianxin a   Yu, Jingyin e   Huang, Shunmou a   Wang, Xiyin a   Wang, Junyi f,g   Lu, Kun b   Fang, Zhiyuan h   Bancroft, Ian a   Yang, Tae Jin i   Hu, Qiong j   Wang, Xinfa a   Yue, Zhen a   Li, Haojie b   more..


Author keywords

[No Author keywords available]

Indexed keywords

PLANT MEDICINAL PRODUCT; GLUCOSINOLATE; TRANSPOSON;

EID: 84901467202     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms4930     Document Type: Article
Times cited : (891)

References (69)
  • 2
    • 34848891537 scopus 로고    scopus 로고
    • Accumulation and bioavailability of dietary carotenoids in vegetable crops
    • Kopsell, D. A. & Kopsell, D. E. Accumulation and bioavailability of dietary carotenoids in vegetable crops. Trends Plant Sci. 11, 499-507 (2006).
    • (2006) Trends Plant Sci. , vol.11 , pp. 499-507
    • Kopsell, D.A.1    Kopsell, D.E.2
  • 3
    • 33745218882 scopus 로고    scopus 로고
    • Biology and biochemistry of glucosinolates
    • Halkier, B. A. & Gershenzon, J. Biology and biochemistry of glucosinolates. Annu. Rev. Plant Biol. 57, 303-333 (2006).
    • (2006) Annu. Rev. Plant Biol. , vol.57 , pp. 303-333
    • Halkier, B.A.1    Gershenzon, J.2
  • 4
    • 68949173808 scopus 로고    scopus 로고
    • 3,3'-diindolylmethane induction of p75NTR-dependent cell death via the p38 mitogen-activated protein kinase pathway in prostate cancer cells
    • Phila
    • Khwaja, F. S., Wynne, S., Posey, I. & Djakiew, D. 3,3'-diindolylmethane induction of p75NTR-dependent cell death via the p38 mitogen-activated protein kinase pathway in prostate cancer cells. Cancer Prev. Res. (Phila) 2, 566-571 (2009).
    • (2009) Cancer Prev. Res. , vol.2 , pp. 566-571
    • Khwaja, F.S.1    Wynne, S.2    Posey, I.3    Djakiew, D.4
  • 5
    • 77951730125 scopus 로고    scopus 로고
    • Sulforaphane, a dietary component of broccoli/broccoli sprouts, inhibits breast cancer stem cells
    • Li, Y. et al. Sulforaphane, a dietary component of broccoli/broccoli sprouts, inhibits breast cancer stem cells. Clin. Cancer Res. 16, 2580-2590 (2010).
    • (2010) Clin. Cancer Res. , vol.16 , pp. 2580-2590
    • Li, Y.1
  • 6
    • 34047136753 scopus 로고    scopus 로고
    • Cruciferous vegetables and human cancer risk: Epidemiologic evidence and mechanistic basis
    • Higdon, J. V., Delage, B., Williams, D. E. & Dashwood, R. H. Cruciferous vegetables and human cancer risk: epidemiologic evidence and mechanistic basis. Pharmacol Res. 55, 224-236 (2007).
    • (2007) Pharmacol Res. , vol.55 , pp. 224-236
    • Higdon, J.V.1    Delage, B.2    Williams, D.E.3    Dashwood, R.H.4
  • 7
    • 33745886901 scopus 로고    scopus 로고
    • Brassicaceae: Species checklist and database on CD-Rom
    • Warwick, S. I., Francis, A. & Al-Shehbaz, I. A. Brassicaceae: species checklist and database on CD-Rom. Pl. Syst. Evol. 259, 249-258 (2006).
    • (2006) Pl. Syst. Evol. , vol.259 , pp. 249-258
    • Warwick, S.I.1    Francis, A.2    Al-Shehbaz, I.A.3
  • 8
    • 0000150298 scopus 로고
    • Genome analysis in Brassica with special reference to the experimental formation of B. Napus and peculiar mode of fertilication
    • Nagaharu, U. Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilication. Jap. J. Bot. 7, 389-452 (1935).
    • (1935) Jap. J. Bot. , vol.7 , pp. 389-452
    • Nagaharu, U.1
  • 9
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • Bowers, J. E., Chapman, B. A., Rong, J. & Paterson, A. H. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422, 433-438 (2003).
    • (2003) Nature , vol.422 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 10
    • 79955630390 scopus 로고    scopus 로고
    • Ancestral polyploidy in seed plants and angiosperms
    • Jiao, Y. et al. Ancestral polyploidy in seed plants and angiosperms. Nature 473, 97-100 (2011).
    • (2011) Nature , vol.473 , pp. 97-100
    • Jiao, Y.1
  • 11
    • 80053386792 scopus 로고    scopus 로고
    • The genome of the mesopolyploid crop species Brassica rapa
    • Wang, X. et al. The genome of the mesopolyploid crop species Brassica rapa. Nat. Genet. 43, 1035-1039 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 1035-1039
    • Wang, X.1
  • 12
    • 17844379449 scopus 로고    scopus 로고
    • Chromosome triplication found across the tribe Brassiceae
    • Lysak, M. A., Koch, M. A., Pecinka, A. & Schubert, I. Chromosome triplication found across the tribe Brassiceae. Genome Res. 15, 516-525 (2005).
    • (2005) Genome Res. , vol.15 , pp. 516-525
    • Lysak, M.A.1    Koch, M.A.2    Pecinka, A.3    Schubert, I.4
  • 13
    • 84879482267 scopus 로고    scopus 로고
    • Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa
    • Cheng, F. et al. Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa. Plant Cell 25, 1541-1554 (2013).
    • (2013) Plant Cell , vol.25 , pp. 1541-1554
    • Cheng, F.1
  • 14
    • 33745467604 scopus 로고    scopus 로고
    • Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy
    • Town, C. D. et al. Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy. Plant Cell 18, 1348-1359 (2006).
    • (2006) Plant Cell , vol.18 , pp. 1348-1359
    • Town, C.D.1
  • 15
    • 71349085860 scopus 로고    scopus 로고
    • Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication
    • Mun, J. H. et al. Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication. Genome Biol. 10, R111 (2009).
    • (2009) Genome Biol. , vol.10 R111
    • Mun, J.H.1
  • 16
    • 84866851788 scopus 로고    scopus 로고
    • Construction and analysis of a high-density genetic linkage map in cabbage
    • Brassica oleracea L. var. capitata
    • Wang, W. et al. Construction and analysis of a high-density genetic linkage map in cabbage (Brassica oleracea L. var. capitata). BMC Genomics 13, 523 (2012).
    • (2012) BMC Genomics , vol.13 , pp. 523
    • Wang, W.1
  • 17
    • 80053342059 scopus 로고    scopus 로고
    • A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations
    • Wang, X. et al. A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations. BMC Genomics 12, 470 (2011).
    • (2011) BMC Genomics , vol.12 , pp. 470
    • Wang, X.1
  • 18
    • 79961199174 scopus 로고    scopus 로고
    • Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing
    • Bancroft, I. et al. Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing. Nat. Biotechnol. 29, 762-766 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 762-766
    • Bancroft, I.1
  • 19
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome and Initiative
    • Arabidopsis Genome and Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815 (2000).
    • (2000) Nature , vol.408 , pp. 796-815
  • 20
    • 33751014556 scopus 로고    scopus 로고
    • The ABC's of comparative genomics in the Brassicaceae: Building blocks of crucifer genomes
    • Schranz, M. E., Lysak, M. A. & Mitchell-Olds, T. The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes. Trends Plant Sci. 11, 535-542 (2006).
    • (2006) Trends Plant Sci. , vol.11 , pp. 535-542
    • Schranz, M.E.1    Lysak, M.A.2    Mitchell, O.T.3
  • 21
    • 77954741256 scopus 로고    scopus 로고
    • Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs
    • Woodhouse, M. R. et al. Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs. PLoS Biol. 8, e1000409 (2010).
    • (2010) PLoS Biol. , vol.8
    • Woodhouse, M.R.1
  • 22
    • 0036061848 scopus 로고    scopus 로고
    • Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
    • Devos, K. M., Brown, J. K. & Bennetzen, J. L. Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res. 12, 1075-1079 (2002).
    • (2002) Genome Res. , vol.12 , pp. 1075-1079
    • Devos, K.M.1    Brown, J.K.2    Bennetzen, J.L.3
  • 23
    • 35348901902 scopus 로고    scopus 로고
    • Ancestral chromosomal blocks are triplicated in Brassiceae species with varying chromosome number and genome size
    • Lysak, M. A., Cheung, K., Kitschke, M. & Bures, P. Ancestral chromosomal blocks are triplicated in Brassiceae species with varying chromosome number and genome size. Plant Physiol. 145, 402-410 (2007).
    • (2007) Plant Physiol. , vol.145 , pp. 402-410
    • Lysak, M.A.1    Cheung, K.2    Kitschke, M.3    Bures, P.4
  • 24
    • 41549133928 scopus 로고    scopus 로고
    • Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: Homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes
    • Panjabi, P. et al. Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes. BMC Genomics 9, 113 (2008).
    • (2008) BMC Genomics , vol.9 , pp. 113
    • Panjabi, P.1
  • 25
    • 31544442199 scopus 로고    scopus 로고
    • Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana
    • Parkin, I. A. et al. Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana. Genetics 171, 765-781 (2005).
    • (2005) Genetics , vol.171 , pp. 765-781
    • Parkin, I.A.1
  • 26
    • 84873386377 scopus 로고    scopus 로고
    • The genome of the pear
    • Pyrus bretschneideri Rehd
    • Wu, J. et al. The genome of the pear (Pyrus bretschneideri Rehd.). Genome Res. 23, 396-408 (2012).
    • (2012) Genome Res. , vol.23 , pp. 396-408
    • Wu, J.1
  • 27
    • 84863693752 scopus 로고    scopus 로고
    • The tomato genome sequence provides insights into fleshy fruit evolution
    • The Tomato Genome Consortium
    • The Tomato Genome Consortium. The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485, 635-641 (2012).
    • (2012) Nature , vol.485 , pp. 635-641
  • 28
    • 69949128558 scopus 로고    scopus 로고
    • Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence
    • Cheung, F. et al. Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence. Plant Cell 21, 1912-1928 (2009).
    • (2009) Plant Cell , vol.21 , pp. 1912-1928
    • Cheung, F.1
  • 29
    • 67651039811 scopus 로고    scopus 로고
    • Bias in plant gene content following different sorts of duplication: Tandem, whole-genome, segmental, or by transposition
    • Freeling, M. Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition. Annu. Rev. Plant Biol. 60, 433-453 (2009).
    • (2009) Annu. Rev. Plant Biol. , vol.60 , pp. 433-453
    • Freeling, M.1
  • 30
    • 77952302158 scopus 로고    scopus 로고
    • The collapse of gene complement following whole genome duplication
    • Sankoff, D., Zheng, C. & Zhu, Q. The collapse of gene complement following whole genome duplication. BMC Genomics 11, 313 (2010).
    • (2010) BMC Genomics , vol.11 , pp. 313
    • Sankoff, D.1    Zheng, C.2    Zhu, Q.3
  • 31
    • 84856480832 scopus 로고    scopus 로고
    • Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids
    • Woodhouse, M. R., Tang, H. & Freeling, M. Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids. Plant Cell 23, 4241-4253 (2011).
    • (2011) Plant Cell , vol.23 , pp. 4241-4253
    • Woodhouse, M.R.1    Tang, H.2    Freeling, M.3
  • 32
    • 84864467620 scopus 로고    scopus 로고
    • Preferential retention of circadian clock genes during diploidization following whole genome triplication in Brassica rapa
    • Lou, P. et al. Preferential retention of circadian clock genes during diploidization following whole genome triplication in Brassica rapa. Plant Cell 24, 2415-2426 (2012).
    • (2012) Plant Cell , vol.24 , pp. 2415-2426
    • Lou, P.1
  • 33
    • 57749100022 scopus 로고    scopus 로고
    • Evolutionary genetics of genome merger and doubling in plants
    • Doyle, J. J. et al. Evolutionary genetics of genome merger and doubling in plants. Annu. Rev. Genet. 42, 443-461 (2008).
    • (2008) Annu. Rev. Genet. , vol.42 , pp. 443-461
    • Doyle, J.J.1
  • 34
    • 79952301890 scopus 로고    scopus 로고
    • Seventy million years of concerted evolution of a homoeologous chromosome pair, in parallel, in major Poaceae lineages
    • Wang, X., Tang, H. & Paterson, A. H. Seventy million years of concerted evolution of a homoeologous chromosome pair, in parallel, in major Poaceae lineages. Plant Cell 23, 27-37 (2011).
    • (2011) Plant Cell , vol.23 , pp. 27-37
    • Wang, X.1    Tang, H.2    Paterson, A.H.3
  • 36
    • 80052223272 scopus 로고    scopus 로고
    • An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming
    • Gabut, M. et al. An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming. Cell 147, 132-146 (2011).
    • (2011) Cell , vol.147 , pp. 132-146
    • Gabut, M.1
  • 37
    • 77953788021 scopus 로고    scopus 로고
    • Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis
    • Zhang, P. G., Huang, S. Z., Pin, A. L. & Adams, K. L. Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis. Mol. Biol. Evol. 27, 1686-1697 (2010).
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 1686-1697
    • Zhang, P.G.1    Huang, S.Z.2    Pin, A.L.3    Adams, K.L.4
  • 38
    • 74949084336 scopus 로고    scopus 로고
    • Genome-wide mapping of alternative splicing in Arabidopsis thaliana
    • Filichkin, S. A. et al. Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res. 20, 45-58 (2010).
    • (2010) Genome Res. , vol.20 , pp. 45-58
    • Filichkin, S.A.1
  • 39
    • 77955708329 scopus 로고    scopus 로고
    • Survey of glucosinolate variation in leaves of Brassica rapa crops
    • Yang, B. & Quiros, C. F. Survey of glucosinolate variation in leaves of Brassica rapa crops. Genet. Res. Crop Evol. 57, 1079-1089 (2010).
    • (2010) Genet. Res. Crop Evol. , vol.57 , pp. 1079-1089
    • Yang, B.1    Quiros, C.F.2
  • 40
    • 58149337567 scopus 로고    scopus 로고
    • Methylthioalkylmalate synthases:Genetics, ecology and evolution
    • Benderoth, M., Pfalz, M. & Kroymann, J. Methylthioalkylmalate synthases: genetics, ecology and evolution. Phytochem. Rev. 8, 255-268 (2009).
    • (2009) Phytochem. Rev. , vol.8 , pp. 255-268
    • Benderoth, M.1    Pfalz, M.2    Kroymann, J.3
  • 41
    • 33745159638 scopus 로고    scopus 로고
    • Positive selection driving diversification in plant secondary metabolism
    • Benderoth, M. et al. Positive selection driving diversification in plant secondary metabolism. Proc. Natl. Acad. Sci. USA 103, 9118-9123 (2006).
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 9118-9123
    • Benderoth, M.1
  • 42
    • 34250663450 scopus 로고    scopus 로고
    • MAM3 catalyses the formation of all aliphatic glucosinolate chain lengths in Arabidopsis
    • Textor, S., de Kraker, J. W., Hause, B., Gershenzon, J. & Tokuhisa, J. G. MAM3 catalyses the formation of all aliphatic glucosinolate chain lengths in Arabidopsis. Plant Physiol. 144, 60-71 (2007).
    • (2007) Plant Physiol. , vol.144 , pp. 60-71
    • Textor, S.1    De Kraker, J.W.2    Hause, B.3    Gershenzon, J.4    Tokuhisa, J.G.5
  • 43
    • 53149150939 scopus 로고    scopus 로고
    • Processing (blanching, boiling, steaming) effects on the content of glucosinolates and antioxidant related parameters in cauliflower
    • Brassica oleracea L. ssp. botrytis
    • Volden, J. et al. Processing (blanching, boiling, steaming) effects on the content of glucosinolates and antioxidant related parameters in cauliflower (Brassica oleracea L. ssp. botrytis). LWT Food Sci. Technol. 42, 63-73 (2009).
    • (2009) LWT Food Sci. Technol. , vol.42 , pp. 63-73
    • Volden, J.1
  • 44
    • 80052888450 scopus 로고    scopus 로고
    • Glucosinolate biosynthetic genes in Brassica rapa
    • Wang, H. et al. Glucosinolate biosynthetic genes in Brassica rapa. Gene 487, 135-142 (2011).
    • (2011) Gene , vol.487 , pp. 135-142
    • Wang, H.1
  • 45
    • 75949117260 scopus 로고    scopus 로고
    • Molecular mechanisms of polyploidy and hybrid vigour
    • Chen, Z. J. Molecular mechanisms of polyploidy and hybrid vigour. Trends Plant Sci. 15, 57-71 (2010).
    • (2010) Trends Plant Sci. , vol.15 , pp. 57-71
    • Chen, Z.J.1
  • 46
    • 79952744855 scopus 로고    scopus 로고
    • Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
    • Schnable, J. C., Springer, N. M. & Freeling, M. Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc. Natl. Acad. Sci. USA 108, 4069-4074 (2011).
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 4069-4074
    • Schnable, J.C.1    Springer, N.M.2    Freeling, M.3
  • 48
    • 8844252293 scopus 로고    scopus 로고
    • TigrScan and Glimmer HMM:Two open source ab initio eukaryotic gene-finders
    • Majoros, W. H., Pertea, M. & Salzberg, S. L. TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. Bioinformatics 20, 2878-2879 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 2878-2879
    • Majoros, W.H.1    Pertea, M.2    Salzberg, S.L.3
  • 49
  • 50
    • 33644554839 scopus 로고    scopus 로고
    • PASA-A program for automated protein NMR backbone signal assignment by pattern-filtering approach
    • Xu, Y., Wang, X., Yang, J., Vaynberg, J. & Qin, J. PASA-a program for automated protein NMR backbone signal assignment by pattern-filtering approach. J. Biomol. NMR 34, 41-56 (2006).
    • (2006) J. Biomol. NMR , vol.34 , pp. 41-56
    • Xu, Y.1    Wang, X.2    Yang, J.3    Vaynberg, J.4    Qin, J.5
  • 51
    • 34147180390 scopus 로고    scopus 로고
    • Creating a honey bee consensus gene set
    • Elsik, C. G. et al. Creating a honey bee consensus gene set. Genome Biol. 8, R13 (2007).
    • (2007) Genome Biol. , vol.8 R13
    • Elsik, C.G.1
  • 52
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M. & Eddy, S. R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 53
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: Inference of RNA alignments
    • Nawrocki, E. P., Kolbe, D. L. & Eddy, S. R. Infernal 1.0: inference of RNA alignments. Bioinformatics 25, 1335-1337 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 54
    • 0037433054 scopus 로고    scopus 로고
    • LTR-STRUC: A novel search and identification program for LTR retrotransposons
    • McCarthy, E. M. & McDonald, J. F. LTR-STRUC: a novel search and identification program for LTR retrotransposons. Bioinformatics 19, 362-367 (2003).
    • (2003) Bioinformatics , vol.19 , pp. 362-367
    • McCarthy, E.M.1    McDonald, J.F.2
  • 55
    • 2342466982 scopus 로고    scopus 로고
    • Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice
    • Ma, J., Devos, K. M. & Bennetzen, J. L. Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res. 14, 860-869 (2004).
    • (2004) Genome Res. , vol.14 , pp. 860-869
    • Ma, J.1    Devos, K.M.2    Bennetzen, J.L.3
  • 56
    • 33845765223 scopus 로고    scopus 로고
    • The transposable element landscape of the model legume Lotus japonicus
    • Holligan, D., Zhang, X., Jiang, N., Pritham, E. J. & Wessler, S. R. The transposable element landscape of the model legume Lotus japonicus. Genetics 174, 2215-2228 (2006).
    • (2006) Genetics , vol.174 , pp. 2215-2228
    • Holligan, D.1    Zhang, X.2    Jiang, N.3    Pritham, E.J.4    Wessler, S.R.5
  • 57
    • 69149101693 scopus 로고    scopus 로고
    • Structure-based discovery and description of plant and animal Helitrons
    • Yang, L. & Bennetzen, J. L. Structure-based discovery and description of plant and animal Helitrons. Proc. Natl Acad. Sci. USA 106, 12832-12837 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 12832-12837
    • Yang, L.1    Bennetzen, J.L.2
  • 58
    • 36249023071 scopus 로고    scopus 로고
    • A unified classification system for eukaryotic transposable elements
    • Wicker, T. et al. A unified classification system for eukaryotic transposable elements. Nat. Rev. Genet. 8, 973-982 (2007).
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 973-982
    • Wicker, T.1
  • 60
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li, L., Stoeckert, Jr C. J. & Roos, D. S. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189 (2003).
    • (2003) Genome Res. , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert Jr., C.J.2    Roos, D.S.3
  • 61
    • 36448991500 scopus 로고    scopus 로고
    • Clustal W and Clustal X version 2.0
    • Larkin, M. A. et al. Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 2947-2948
    • Larkin, M.A.1
  • 62
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K. et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739 (2011).
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 64
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNAseq experiments with TopHat and Cufflinks
    • Trapnell, C. et al. Differential gene and transcript expression analysis of RNAseq experiments with TopHat and Cufflinks. Nat. Protoc. 7, 562-578 (2012).
    • (2012) Nat. Protoc. , vol.7 , pp. 562-578
    • Trapnell, C.1
  • 65
    • 84871965646 scopus 로고    scopus 로고
    • The fate of duplicated genes in a polyploid plant genome
    • Roulin, A. et al. The fate of duplicated genes in a polyploid plant genome. Plant J. 73, 143-153 (2012).
    • (2012) Plant J. , vol.73 , pp. 143-153
    • Roulin, A.1
  • 66
    • 43249115146 scopus 로고    scopus 로고
    • Testing the ratio of two poisson rates
    • Gu, K., Ng, H. K., Tang, M. L. & Schucany, W. R. Testing the ratio of two poisson rates. Biom. J. 50, 283-298 (2008).
    • (2008) Biom. J. , vol.50 , pp. 283-298
    • Gu, K.1    Ng, H.K.2    Tang, M.L.3    Schucany, W.R.4
  • 67
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Statist. Soc. Ser. 57, 289-300 (1995).
    • (1995) J. Roy. Statist. Soc. Ser. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 68
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120 (1980).
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 69
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., Dudley, J., Nei, M. & Kumar, S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599 (2007).
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.