-
1
-
-
11244349782
-
Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid
-
Adams, K.L., Percifield, R., and Wendel, J.F. 2004. Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid. Genetics 168: 2217-2226.
-
(2004)
Genetics
, vol.168
, pp. 2217-2226
-
-
Adams, K.L.1
Percifield, R.2
Wendel, J.F.3
-
2
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
3
-
-
0032004775
-
Matrix attachment regions and structural collinearity in the genomes of two grass species
-
Avramova, Z., Tikhonov, A., Chen, M., and Bennetzen, J.L. 1998. Matrix attachment regions and structural collinearity in the genomes of two grass species. Nucleic Acids Res. 26: 761-767.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 761-767
-
-
Avramova, Z.1
Tikhonov, A.2
Chen, M.3
Bennetzen, J.L.4
-
4
-
-
15244350824
-
Dosage balance in gene regulation: Biological implications
-
Birchler, J.A., Riddle, N.C., Auger, D.L., and Veitia, R.A. 2005. Dosage balance in gene regulation: Biological implications. Trends Genet. 21: 219-226.
-
(2005)
Trends Genet.
, vol.21
, pp. 219-226
-
-
Birchler, J.A.1
Riddle, N.C.2
Auger, D.L.3
Veitia, R.A.4
-
5
-
-
3142700743
-
Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
-
Blanc, G. and Wolfe, K.H. 2004. Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 16: 1667-1678.
-
(2004)
Plant Cell
, vol.16
, pp. 1667-1678
-
-
Blanc, G.1
Wolfe, K.H.2
-
6
-
-
0033891353
-
Extensive duplication and reshuffling in the Arabidopsis genome
-
Blanc, G. Barakat, A., Guyot, R., Cooke, R., and Delseny, M. 2000. Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12: 1093-1101.
-
(2000)
Plant Cell
, vol.12
, pp. 1093-1101
-
-
Blanc, G.1
Barakat, A.2
Guyot, R.3
Cooke, R.4
Delseny, M.5
-
7
-
-
0037313579
-
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
-
Blanc, G., Hokamp, K., and Wolfe, K.H. 2003. A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res. 13: 137-144.
-
(2003)
Genome Res.
, vol.13
, pp. 137-144
-
-
Blanc, G.1
Hokamp, K.2
Wolfe, K.H.3
-
8
-
-
0037468758
-
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
-
Bowers, J.E., Chapman, B.A., Rong, J., and Paterson, A.H. 2003. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422: 433-438.
-
(2003)
Nature
, vol.422
, pp. 433-438
-
-
Bowers, J.E.1
Chapman, B.A.2
Rong, J.3
Paterson, A.H.4
-
9
-
-
33646859550
-
Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana
-
Casneuf, T., De Bodt, S., Raes, J., Maere, S., and Van de Peer, Y. 2006. Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana. Genome Biol. 7: R13.
-
(2006)
Genome Biol.
, vol.7
-
-
Casneuf, T.1
De Bodt, S.2
Raes, J.3
Maere, S.4
Van De Peer, Y.5
-
10
-
-
1042269474
-
A comparative phylogenetic approach for dating whole genome duplication events
-
Chapman, B.A., Bowers, J.E., Schultz, S.R., and Paterson, A.H. 2004. A comparative phylogenetic approach for dating whole genome duplication events. Bioinformatics 20: 180-185.
-
(2004)
Bioinformatics
, vol.20
, pp. 180-185
-
-
Chapman, B.A.1
Bowers, J.E.2
Schultz, S.R.3
Paterson, A.H.4
-
11
-
-
33644499450
-
Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication
-
Chapman, B.A., Bowers, J.E., Feltus, F.A., and Paterson, A.H. 2006. Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication. Proc. Natl. Acad. Sci. 103: 2730-2735.
-
(2006)
Proc. Natl. Acad. Sci.
, vol.103
, pp. 2730-2735
-
-
Chapman, B.A.1
Bowers, J.E.2
Feltus, F.A.3
Paterson, A.H.4
-
12
-
-
33646230540
-
Functional partitioning of yeast co-expression networks after genome duplication
-
Conant, G.C. and Wolfe, K.H. 2006. Functional partitioning of yeast co-expression networks after genome duplication. PLoS Biol. 4: e109.
-
(2006)
PLoS Biol.
, vol.4
-
-
Conant, G.C.1
Wolfe, K.H.2
-
13
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force, A., Lynch, M., Pickett, F.B., Amores, A., Yan, Y.L., and Postlethwait, J. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
Postlethwait, J.6
-
14
-
-
33745610025
-
Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
-
Freeling, M. and Thomas, B.C. 2006. Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. Genome Res. (this issue).
-
(2006)
Genome Res.
, Issue.THIS ISSUE
-
-
Freeling, M.1
Thomas, B.C.2
-
15
-
-
8844244033
-
Very low gene duplication rate in the yeast genome
-
Gao, L.Z. and Innan, H. 2004. Very low gene duplication rate in the yeast genome. Science 306: 1367-1370.
-
(2004)
Science
, vol.306
, pp. 1367-1370
-
-
Gao, L.Z.1
Innan, H.2
-
16
-
-
0037372327
-
A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions
-
Glazko, G.V., Koonin, E.V., Rogozin, I.B., and Shabalina, S.A. 2003. A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions. Trends Genet. 19: 119-124.
-
(2003)
Trends Genet.
, vol.19
, pp. 119-124
-
-
Glazko, G.V.1
Koonin, E.V.2
Rogozin, I.B.3
Shabalina, S.A.4
-
17
-
-
0346727127
-
Protein degradation and protection against misfolded or damaged proteins
-
Goldberg, A.L. 2003. Protein degradation and protection against misfolded or damaged proteins. Nature 426: 895-899.
-
(2003)
Nature
, vol.426
, pp. 895-899
-
-
Goldberg, A.L.1
-
18
-
-
0036890022
-
Rapid divergence in expression between duplicate genes inferred from microarray data
-
Gu, Z., Nicolae, D., Lu, H.H., and Li, W.H. 2002. Rapid divergence in expression between duplicate genes inferred from microarray data. Trends Genet. 18: 609-613.
-
(2002)
Trends Genet.
, vol.18
, pp. 609-613
-
-
Gu, Z.1
Nicolae, D.2
Lu, H.H.3
Li, W.H.4
-
19
-
-
2642580659
-
Duplicate genes increase gene expression diversity within and between species
-
Gu, Z., Rifkin, S.A., White, K.P., and Li, W.H. 2004. Duplicate genes increase gene expression diversity within and between species. Nat. Genet. 36: 577-579.
-
(2004)
Nat. Genet.
, vol.36
, pp. 577-579
-
-
Gu, Z.1
Rifkin, S.A.2
White, K.P.3
Li, W.H.4
-
20
-
-
16544393690
-
Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis
-
Haberer, G., Hindemitt, T., Meyers, B.C., and Mayer, K.F. 2004. Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis. Plant Physiol. 136: 3009-3022.
-
(2004)
Plant Physiol.
, vol.136
, pp. 3009-3022
-
-
Haberer, G.1
Hindemitt, T.2
Meyers, B.C.3
Mayer, K.F.4
-
21
-
-
0002281363
-
The part played by recurrent mutation in evolution
-
Haldane, J.B.S. 1933. The part played by recurrent mutation in evolution. Am. Nat. 67: 5-19.
-
(1933)
Am. Nat.
, vol.67
, pp. 5-19
-
-
Haldane, J.B.S.1
-
22
-
-
15544389841
-
Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
-
He, X. and Zhang, J. 2005. Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics 169: 1157-1164.
-
(2005)
Genetics
, vol.169
, pp. 1157-1164
-
-
He, X.1
Zhang, J.2
-
23
-
-
0025645782
-
Gene expression and parental dominance in hybrid plants
-
Heslop-Harrison, J.S. 1990. Gene expression and parental dominance in hybrid plants. Dev. Suppl. 1990: 21-28.
-
(1990)
Dev. Suppl.
, vol.1990
, pp. 21-28
-
-
Heslop-Harrison, J.S.1
-
24
-
-
0141853991
-
Conserved noncoding sequences in the grasses
-
Inada, D.C., Bashir, A., Lee, C., Thomas, B.C., Ko, C., Goff, S.A., and Freeling, M. 2003. Conserved noncoding sequences in the grasses. Genome Res. 13: 2030-2041.
-
(2003)
Genome Res.
, vol.13
, pp. 2030-2041
-
-
Inada, D.C.1
Bashir, A.2
Lee, C.3
Thomas, B.C.4
Ko, C.5
Goff, S.A.6
Freeling, M.7
-
25
-
-
0036241339
-
Gene loss, silencing and activation in a newly synthesized wheat allotetraploid
-
Kashkush, K., Feldman, M., and Levy, A.A. 2002. Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics 160: 1651-1659.
-
(2002)
Genetics
, vol.160
, pp. 1651-1659
-
-
Kashkush, K.1
Feldman, M.2
Levy, A.A.3
-
26
-
-
1942452749
-
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
-
Kellis, M., Birren, B.W., and Lander, E.S. 2004. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428: 617-624.
-
(2004)
Nature
, vol.428
, pp. 617-624
-
-
Kellis, M.1
Birren, B.W.2
Lander, E.S.3
-
27
-
-
27644472372
-
Orthologs, paralogs, and evolutionary genomics
-
Koonin, E.V. 2005. Orthologs, paralogs, and evolutionary genomics. Annu. Rev. Genet. 39: 309-338.
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 309-338
-
-
Koonin, E.V.1
-
28
-
-
0035810998
-
Protein-coding genes are epigenetically regulated in Arabidopsis polyploids
-
Lee, H.-S. and Chen, Z.J. 2001. Protein-coding genes are epigenetically regulated in Arabidopsis polyploids. Proc. Natl. Acad. Sci. 98: 6753-6758.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 6753-6758
-
-
Lee, H.-S.1
Chen, Z.J.2
-
31
-
-
3342927934
-
Role of transposable elements in heterchromatin and epigenetic control
-
Lippman, Z., Gendrel, A.-V., Black, M., Baughn, M.W., Dedhia, N., McCombe, W.R., Levine, K., Mittel, V., May, B., Kasschau, K.D., et al. 2004. Role of transposable elements in heterchromatin and epigenetic control. Nature 430: 471-476.
-
(2004)
Nature
, vol.430
, pp. 471-476
-
-
Lippman, Z.1
Gendrel, A.-V.2
Black, M.3
Baughn, M.W.4
Dedhia, N.5
McCombe, W.R.6
Levine, K.7
Mittel, V.8
May, B.9
Kasschau, K.D.10
-
32
-
-
13144251179
-
Plant conserved non-coding sequences and paralogue evolution
-
Lockton, S. and Gaut, B.S. 2005. Plant conserved non-coding sequences and paralogue evolution. Trends Genet. 21: 60-65.
-
(2005)
Trends Genet.
, vol.21
, pp. 60-65
-
-
Lockton, S.1
Gaut, B.S.2
-
33
-
-
0033972072
-
The probability of duplicate gene preservation by subfunctionalization
-
Lynch, M. and Force, A. 2000. The probability of duplicate gene preservation by subfunctionalization. Genetics 154: 459-473.
-
(2000)
Genetics
, vol.154
, pp. 459-473
-
-
Lynch, M.1
Force, A.2
-
34
-
-
17244368487
-
Modeling gene and genome duplications in eukaryotes
-
Maere, S., De Bodt, S., Raes, J., Casneuf, T., Van Montagu, M., Kuiper, M., and Van de Peer, Y. 2005. Modeling gene and genome duplications in eukaryotes. Proc. Natl. Acad. Sci. 102: 5454-5459.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 5454-5459
-
-
Maere, S.1
De Bodt, S.2
Raes, J.3
Casneuf, T.4
Van Montagu, M.5
Kuiper, M.6
Van De Peer, Y.7
-
35
-
-
0038486898
-
Divergence in the spatial pattern of gene expression between human duplicate genes
-
Makova, K.D. and Li, W.-H. 2003. Divergence in the spatial pattern of gene expression between human duplicate genes. Genome Res. 13: 1638-1645.
-
(2003)
Genome Res.
, vol.13
, pp. 1638-1645
-
-
Makova, K.D.1
Li, W.-H.2
-
36
-
-
0036613237
-
Extensive genomic duplication during early chordate evolution
-
McLysaght, A., Hokamp, K., and Wolfe, K.H. 2002. Extensive genomic duplication during early chordate evolution. Nat. Genet. 31: 200-204.
-
(2002)
Nat. Genet.
, vol.31
, pp. 200-204
-
-
McLysaght, A.1
Hokamp, K.2
Wolfe, K.H.3
-
37
-
-
0037321897
-
A sequence-based map of Arabidopsis genes with mutant phenotypes
-
Meinke, D.W., Meinke, L.K., Showalter, T.C., Schissel, A.M., Mueller, L.A., and Tzafrir, I. 2003. A sequence-based map of Arabidopsis genes with mutant phenotypes. Plant Physiol. 131: 409-418.
-
(2003)
Plant Physiol.
, vol.131
, pp. 409-418
-
-
Meinke, D.W.1
Meinke, L.K.2
Showalter, T.C.3
Schissel, A.M.4
Mueller, L.A.5
Tzafrir, I.6
-
39
-
-
0037370585
-
Understanding mechanisms of novel gene expression in polyploids
-
Osborn, T.C., Pires, J.C., Birchler, J.A., Auger, D.L., Chen, Z.J., Lee, H.S., Comai, L., Madlung, A., Doerge, R.W., Colot, V., et al. 2003. Understanding mechanisms of novel gene expression in polyploids. Trends Genet. 19: 141-147.
-
(2003)
Trends Genet.
, vol.19
, pp. 141-147
-
-
Osborn, T.C.1
Pires, J.C.2
Birchler, J.A.3
Auger, D.L.4
Chen, Z.J.5
Lee, H.S.6
Comai, L.7
Madlung, A.8
Doerge, R.W.9
Colot, V.10
-
40
-
-
0038157152
-
Dosage sensitivity and the evolution of gene families in yeast
-
Papp, B., Pal, C., and Hurst, L.D. 2003. Dosage sensitivity and the evolution of gene families in yeast. Nature 424: 194-197.
-
(2003)
Nature
, vol.424
, pp. 194-197
-
-
Papp, B.1
Pal, C.2
Hurst, L.D.3
-
41
-
-
14244262251
-
Ancient duplications of cereal genomes
-
Paterson, A.H., Bowers, J.E., Van de Peer, Y., and Vandepoele, K. 2006. Ancient duplications of cereal genomes. New Phytol. 165: 658-661.
-
(2006)
New Phytol.
, vol.165
, pp. 658-661
-
-
Paterson, A.H.1
Bowers, J.E.2
Van De Peer, Y.3
Vandepoele, K.4
-
42
-
-
2642540236
-
Gene duplication, the evolution of novel gene functions, and detecting functional divergence of duplicates in silico
-
Raes, J. and Van de Peer, Y. 2003. Gene duplication, the evolution of novel gene functions, and detecting functional divergence of duplicates in silico. Appl. Bioinformatics 2: 91-101.
-
(2003)
Appl. Bioinformatics
, vol.2
, pp. 91-101
-
-
Raes, J.1
Van De Peer, Y.2
-
43
-
-
33645023614
-
Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
-
Scannell, D.R., Byrne, K.P., Gordon, J.L., Wong, S., and Wolfe, K.H. 2006. Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 440: 341-345.
-
(2006)
Nature
, vol.440
, pp. 341-345
-
-
Scannell, D.R.1
Byrne, K.P.2
Gordon, J.L.3
Wong, S.4
Wolfe, K.H.5
-
44
-
-
4444363053
-
Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome
-
Seoighe, C. and Gehring, C. 2004. Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome. Trends Genet. 20: 461-464.
-
(2004)
Trends Genet.
, vol.20
, pp. 461-464
-
-
Seoighe, C.1
Gehring, C.2
-
45
-
-
0034866855
-
Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat
-
Shaked, H., Kashkush, K., Ozkan, H., Feldman, M., and Levy, A.A. 2001. Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13: 1749-1759.
-
(2001)
Plant Cell
, vol.13
, pp. 1749-1759
-
-
Shaked, H.1
Kashkush, K.2
Ozkan, H.3
Feldman, M.4
Levy, A.A.5
-
47
-
-
0029162810
-
Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution
-
Song, K., Lu, P., Tang, K., and Osborn, T.C. 1995. Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc. Natl. Acad. Sci. 92: 7719-7723.
-
(1995)
Proc. Natl. Acad. Sci.
, vol.92
, pp. 7719-7723
-
-
Song, K.1
Lu, P.2
Tang, K.3
Osborn, T.C.4
-
49
-
-
0032964297
-
BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences
-
Tatusova, T.A. and Madden, T.L. 1999. BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174: 247-250.
-
(1999)
FEMS Microbiol. Lett.
, vol.174
, pp. 247-250
-
-
Tatusova, T.A.1
Madden, T.L.2
-
50
-
-
18844408081
-
Evidence for an ancient whole genome duplication event in rice and other cereals
-
Tian, C.G., Xiong, Y.Q., Liu, T.Y., Sun, S.H., Chen, L.B., and Chen, M.S. 2005. Evidence for an ancient whole genome duplication event in rice and other cereals. Acta Genetica Sinica 32: 519-527.
-
(2005)
Acta Genetica Sinica
, vol.32
, pp. 519-527
-
-
Tian, C.G.1
Xiong, Y.Q.2
Liu, T.Y.3
Sun, S.H.4
Chen, L.B.5
Chen, M.S.6
-
51
-
-
0141564555
-
Evidence that rice and other cereals are ancient aneuploids
-
Vandepoele, K., Simillion, C., and Van de Peer, Y. 2003. Evidence that rice and other cereals are ancient aneuploids. Plant Cell 9: 2192-2202.
-
(2003)
Plant Cell
, vol.9
, pp. 2192-2202
-
-
Vandepoele, K.1
Simillion, C.2
Van De Peer, Y.3
-
52
-
-
0036008552
-
Exploring the etiology of haploinsufficiency
-
Veitia, R.A. 2002. Exploring the etiology of haploinsufficiency. Bioessays 24: 175-184.
-
(2002)
Bioessays
, vol.24
, pp. 175-184
-
-
Veitia, R.A.1
-
53
-
-
0034671866
-
The origins of genomic duplications in Arabidopsis
-
Vision, T.J., Brown, D.G., and Tanksley, S.D. 2000. The origins of genomic duplications in Arabidopsis. Science 290: 2114-2117.
-
(2000)
Science
, vol.290
, pp. 2114-2117
-
-
Vision, T.J.1
Brown, D.G.2
Tanksley, S.D.3
-
54
-
-
0036792156
-
Asymmetric functional divergence of duplicate genes in yeast
-
Wagner, A. 2002. Asymmetric functional divergence of duplicate genes in yeast. Mol. Biol. Evol. 19: 1760-1768.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1760-1768
-
-
Wagner, A.1
-
55
-
-
33644762929
-
Genome-wide non-additive gene regulation in Arabidopsis allotetraploids
-
Wang, J., Tian, L., Lee, H.S., Wei, N., Jiang, H., Watson, B., Madlung, A., Osborn, T., Doerge, R.D., Comai, L., et al. 2006. Genome-wide non-additive gene regulation in Arabidopsis allotetraploids. Genetics 172: 507-517.
-
(2006)
Genetics
, vol.172
, pp. 507-517
-
-
Wang, J.1
Tian, L.2
Lee, H.S.3
Wei, N.4
Jiang, H.5
Watson, B.6
Madlung, A.7
Osborn, T.8
Doerge, R.D.9
Comai, L.10
-
56
-
-
3042569650
-
Coexpression of neighboring genes in the genome of Arabidopsis thaliana
-
Williams, E.J. and Bowles, D.J. 2004. Coexpression of neighboring genes in the genome of Arabidopsis thaliana. Genome Res. 14: 1060-1067.
-
(2004)
Genome Res.
, vol.14
, pp. 1060-1067
-
-
Williams, E.J.1
Bowles, D.J.2
-
57
-
-
0030947344
-
Molecular evidence for an ancient duplication of the entire yeast genome
-
Wolfe, K.H. and Shields, D.C. 1997. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387: 708-713.
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(1997)
Nature
, vol.387
, pp. 708-713
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Wolfe, K.H.1
Shields, D.C.2
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