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Volumn 9783642314421, Issue , 2012, Pages 309-339

Two rounds of whole-genome duplication: Evidence and impact on the evolution of vertebrate innovations

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EID: 84949179221     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-642-31442-1_16     Document Type: Chapter
Times cited : (20)

References (197)
  • 1
    • 33749444113 scopus 로고    scopus 로고
    • Competition may determine the diversity of transposable elements
    • Abrusán G, Krambeck H-J (2006) Competition may determine the diversity of transposable elements. Theor Popul Biol 70(3):364-375
    • (2006) Theor Popul Biol , vol.70 , Issue.3 , pp. 364-375
    • Abrusán, G.1    Krambeck, H.-J.2
  • 2
    • 0037266830 scopus 로고    scopus 로고
    • Functional evolution in the ancestral lineage of vertebrates or when genomic complexity was wagging its morphological tail
    • Aburomia R, Khaner O, Sidow A (2003) Functional evolution in the ancestral lineage of vertebrates or when genomic complexity was wagging its morphological tail. J Struct Funct Genomics 3(1-4):45-52
    • (2003) J Struct Funct Genomics , vol.3 , Issue.1-4 , pp. 45-52
    • Aburomia, R.1    Khaner, O.2    Sidow, A.3
  • 3
    • 0027261431 scopus 로고
    • Comparative linkage maps of the rice and maize genomes
    • Ahn S, Tanksley SD (1993) Comparative linkage maps of the rice and maize genomes. Proc Natl Acad Sci USA 90(17):7980-7984
    • (1993) Proc Natl Acad Sci USA , vol.90 , Issue.17 , pp. 7980-7984
    • Ahn, S.1    Tanksley, S.D.2
  • 4
    • 70349506844 scopus 로고    scopus 로고
    • The retinoic acid machinery in invertebrates: Ancestral elements and vertebrate innovations
    • Albalat R (2009) The retinoic acid machinery in invertebrates: ancestral elements and vertebrate innovations. Mol Cell Endocrinol 313(1-2):23-35
    • (2009) Mol Cell Endocrinol , vol.313 , Issue.1-2 , pp. 23-35
    • Albalat, R.1
  • 5
    • 84856243271 scopus 로고    scopus 로고
    • Evolution of retinoid and steroid signaling: Vertebrate diversification from an amphioxus perspective
    • Albalat R, Brunet F, Laudet V, Schubert M (2011) Evolution of retinoid and steroid signaling: vertebrate diversification from an amphioxus perspective. Genome Biol Evol 3:985-1005
    • (2011) Genome Biol Evol , vol.3 , pp. 985-1005
    • Albalat, R.1    Brunet, F.2    Laudet, V.3    Schubert, M.4
  • 7
    • 0029946112 scopus 로고    scopus 로고
    • Duplication of an amphioxus myogenic bHLH gene is independent of vertebrate myogenic bHLH gene duplication
    • Araki I, Terazawa K, Satoh N (1996) Duplication of an amphioxus myogenic bHLH gene is independent of vertebrate myogenic bHLH gene duplication. Gene 171(2):231-236
    • (1996) Gene , vol.171 , Issue.2 , pp. 231-236
    • Araki, I.1    Terazawa, K.2    Satoh, N.3
  • 8
    • 0030854106 scopus 로고    scopus 로고
    • Phylogenetic reconstruction of vertebrate Hox cluster duplications
    • Bailey W, Kim J, Wagner G, Ruddle F (1997) Phylogenetic reconstruction of vertebrate Hox cluster duplications. Mol Biol Evol 14:843-853
    • (1997) Mol Biol Evol , vol.14 , pp. 843-853
    • Bailey, W.1    Kim, J.2    Wagner, G.3    Ruddle, F.4
  • 9
    • 51649089137 scopus 로고    scopus 로고
    • Evolution of developmental roles of Pax2/5/8 paralogs after independent duplication in urochordate and vertebrate lineages
    • Bassham S, Cañestro C, Postlethwait JH (2008) Evolution of developmental roles of Pax2/5/8 paralogs after independent duplication in urochordate and vertebrate lineages. BMC Biol 6:35
    • (2008) BMC Biol , vol.6 , pp. 35
    • Bassham, S.1    Cañestro, C.2    Postlethwait, J.H.3
  • 10
    • 27644458291 scopus 로고    scopus 로고
    • The evolutionary history of placodes: A molecular genetic investigation of the larvacean urochordate Oikopleura dioica
    • Bassham S, Postlethwait JH (2005) The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica. Development 132(19):4259-4272
    • (2005) Development , vol.132 , Issue.19 , pp. 4259-4272
    • Bassham, S.1    Postlethwait, J.H.2
  • 12
    • 27444444339 scopus 로고    scopus 로고
    • Transposable elements, gene creation and genome rearrangement in flowering plants
    • Bennetzen JL (2005) Transposable elements, gene creation and genome rearrangement in flowering plants. Curr Opin Genet Dev 15(6):621-627
    • (2005) Curr Opin Genet Dev , vol.15 , Issue.6 , pp. 621-627
    • Bennetzen, J.L.1
  • 13
    • 58549111629 scopus 로고    scopus 로고
    • Actors of the tyrosine kinase receptor downstream signaling pathways in amphioxus
    • Bertrand S, Campo-Paysaa F, Camasses A, Garcia-Fernandez J, Escriva H (2009) Actors of the tyrosine kinase receptor downstream signaling pathways in amphioxus. Evol Dev 11(1):13-26
    • (2009) Evol Dev , vol.11 , Issue.1 , pp. 13-26
    • Bertrand, S.1    Campo-Paysaa, F.2    Camasses, A.3    Garcia-Fernandez, J.4    Escriva, H.5
  • 14
    • 34250632677 scopus 로고    scopus 로고
    • The gene balance hypothesis from classical genetics to modern genomics
    • Birchler JA, Veitia RA (2007) The gene balance hypothesis: from classical genetics to modern genomics. Plant Cell 19(2):395-402
    • (2007) Plant Cell , vol.19 , Issue.2 , pp. 395-402
    • Birchler, J.A.1    Veitia, R.A.2
  • 15
    • 77950949952 scopus 로고    scopus 로고
    • The gene balance hypothesis implications for gene regulation, quantitative traits and evolution
    • Birchler JA, Veitia RA (2010) The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution. New Phytol 186(1):54-62
    • (2010) New Phytol , vol.186 , Issue.1 , pp. 54-62
    • Birchler, J.A.1    Veitia, R.A.2
  • 18
    • 79955116851 scopus 로고    scopus 로고
    • The teleost agouti-related protein 2 gene is an ohnolog gone missing from the tetrapod genome
    • Braasch I, Postlethwait JH (2011) The teleost agouti-related protein 2 gene is an ohnolog gone missing from the tetrapod genome. Proc Natl Acad Sci USA 108(13):E47-E48
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.13 , pp. E47-E48
    • Braasch, I.1    Postlethwait, J.H.2
  • 19
    • 62349112527 scopus 로고    scopus 로고
    • The endothelin system: Evolution of vertebrate-specific ligand-receptor interactions by three rounds of genome duplication
    • Braasch I, Volff JN, Schartl M (2009) The endothelin system: evolution of vertebrate-specific ligand-receptor interactions by three rounds of genome duplication. Mol Biol Evol 26(4):783-799
    • (2009) Mol Biol Evol , vol.26 , Issue.4 , pp. 783-799
    • Braasch, I.1    Volff, J.N.2    Schartl, M.3
  • 20
    • 52949135190 scopus 로고    scopus 로고
    • Evolution of a new function by degenerative mutation in cephalochordate steroid receptors
    • Bridgham JT, Brown JE, Rodriguez-Mari A, Catchen JM, Thornton JW (2008) Evolution of a new function by degenerative mutation in cephalochordate steroid receptors. PLoS Genet 4(9):e1000191
    • (2008) PLoS Genet , vol.4 , Issue.9 , pp. e1000191
    • Bridgham, J.T.1    Brown, J.E.2    Rodriguez-Mari, A.3    Catchen, J.M.4    Thornton, J.W.5
  • 22
    • 78650942892 scopus 로고    scopus 로고
    • Micro RNA complements in deuterostomes: Origin and evolution of microRNAs
    • Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M (2011) microRNA complements in deuterostomes: origin and evolution of microRNAs. Evol Dev 13(1):15-27
    • (2011) Evol Dev , vol.13 , Issue.1 , pp. 15-27
    • Campo-Paysaa, F.1    Semon, M.2    Cameron, R.A.3    Peterson, K.J.4    Schubert, M.5
  • 23
    • 84859061219 scopus 로고    scopus 로고
    • Transposon diversity is higher in amphioxus than in vertebrates: Functional and evolutionary inferences
    • Cañestro C, Albalat R (2012) Transposon diversity is higher in amphioxus than in vertebrates: functional and evolutionary inferences. Brief Funct Genomics 11(2):131-141
    • (2012) Brief Funct Genomics , vol.11 , Issue.2 , pp. 131-141
    • Cañestro, C.1    Albalat, R.2
  • 24
    • 0036132747 scopus 로고    scopus 로고
    • Ascidian and amphioxus Adh genes correlate functional and molecular features of the ADH family expansion during vertebrate evolution
    • Cañestro C, Albalat R, Hjelmqvist L, Godoy L, Jornvall H, Gonzalez-Duarte R (2002a) Ascidian and amphioxus Adh genes correlate functional and molecular features of the ADH family expansion during vertebrate evolution. J Mol Evol 54(1):81-89
    • (2002) J Mol Evol , vol.54 , Issue.1 , pp. 81-89
    • Cañestro, C.1    Albalat, R.2    Hjelmqvist, L.3    Godoy, L.4    Jornvall, H.5    Gonzalez-Duarte, R.6
  • 25
    • 0037270345 scopus 로고    scopus 로고
    • Seeing chordate evolution through the Ciona genome sequence
    • Cañestro C, Bassham S, Postlethwait JH (2003a) Seeing chordate evolution through the Ciona genome sequence. Genome Biol 4(3):208-211
    • (2003) Genome Biol , vol.4 , Issue.3 , pp. 208-211
    • Cañestro, C.1    Bassham, S.2    Postlethwait, J.H.3
  • 26
    • 25844450053 scopus 로고    scopus 로고
    • Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain
    • Cañestro C, Bassham S, Postlethwait JH (2005) Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain. Dev Biol 285(2):298-315
    • (2005) Dev Biol , vol.285 , Issue.2 , pp. 298-315
    • Cañestro, C.1    Bassham, S.2    Postlethwait, J.H.3
  • 27
    • 67149129951 scopus 로고    scopus 로고
    • Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes
    • Cañestro C, Catchen JM, Rodriguez-Mari A, Yokoi H, Postlethwait JH (2009) Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes. PLoS Genet 5(5):e1000496
    • (2009) PLoS Genet , vol.5 , Issue.5 , pp. e1000496
    • Cañestro, C.1    Catchen, J.M.2    Rodriguez-Mari, A.3    Yokoi, H.4    Postlethwait, J.H.5
  • 28
    • 0141797662 scopus 로고    scopus 로고
    • Comparative expression analysis of Adh3 during arthropod, urochordate, cephalochordate and vertebrate development challenges its predicted housekeeping role
    • Cañestro C, Godoy L, Gonzàlez-Duarte R, Albalat R (2003b) Comparative expression analysis of Adh3 during arthropod, urochordate, cephalochordate and vertebrate development challenges its predicted housekeeping role. Evol Dev 5(2):157-162
    • (2003) Evol Dev , vol.5 , Issue.2 , pp. 157-162
    • Cañestro, C.1    Godoy, L.2    Gonzàlez-Duarte, R.3    Albalat, R.4
  • 29
    • 0036640527 scopus 로고    scopus 로고
    • Minisatellite instability at the Adh locus reveals somatic polymorphism in amphioxus
    • Cañestro C, Gonzàlez-Duarte R, Albalat R (2002b) Minisatellite instability at the Adh locus reveals somatic polymorphism in amphioxus. Nucleic Acids Res 30(13):2871-2876
    • (2002) Nucleic Acids Res , vol.30 , Issue.13 , pp. 2871-2876
    • Cañestro, C.1    Gonzàlez-Duarte, R.2    Albalat, R.3
  • 30
    • 0033769340 scopus 로고    scopus 로고
    • Amphioxus alcohol dehydrogenase is a class 3 form of single type and of structural conservation but with unique developmental expression
    • Cañestro C, Hjelmqvist L, Albalat R, Garcia-Fernàndez J, Gonzàlez-Duarte R, Jörnvall H (2000) Amphioxus alcohol dehydrogenase is a class 3 form of single type and of structural conservation but with unique developmental expression. Eur J Biochem 267:6511-6518
    • (2000) Eur J Biochem , vol.267 , pp. 6511-6518
    • Cañestro, C.1    Hjelmqvist, L.2    Albalat, R.3    Garcia-Fernàndez, J.4    Gonzàlez-Duarte, R.5    Jörnvall, H.6
  • 31
    • 34247636202 scopus 로고    scopus 로고
    • Development of a chordate anterior-posterior axis without classical retinoic acid signaling
    • Cañestro C, Postlethwait JH (2007) Development of a chordate anterior-posterior axis without classical retinoic acid signaling. Dev Biol 305(2):522-538
    • (2007) Dev Biol , vol.305 , Issue.2 , pp. 522-538
    • Cañestro, C.1    Postlethwait, J.H.2
  • 33
    • 36248946042 scopus 로고    scopus 로고
    • Evolutionary developmental biology and genomics
    • Cañestro C, Yokoi H, Postlethwait JH (2007) Evolutionary developmental biology and genomics. Nat Rev Genet 8(12):932-942
    • (2007) Nat Rev Genet , vol.8 , Issue.12 , pp. 932-942
    • Cañestro, C.1    Yokoi, H.2    Postlethwait, J.H.3
  • 35
    • 68149122283 scopus 로고    scopus 로고
    • Automated identification of conserved synteny after whole-genome duplication
    • Catchen JM, Conery JS, Postlethwait JH (2009) Automated identification of conserved synteny after whole-genome duplication. Genome Res 19(8):1497-1505
    • (2009) Genome Res , vol.19 , Issue.8 , pp. 1497-1505
    • Catchen, J.M.1    Conery, J.S.2    Postlethwait, J.H.3
  • 36
    • 33646470015 scopus 로고    scopus 로고
    • Multiple mechanisms promote the retained expression of gene duplicates in the tetraploid frog Xenopus laevis
    • Chain FJ, Evans BJ (2006) Multiple mechanisms promote the retained expression of gene duplicates in the tetraploid frog Xenopus laevis. PLoS Genet 2(4):e56
    • (2006) PLoS Genet , vol.2 , Issue.4 , pp. e56
    • Chain, F.J.1    Evans, B.J.2
  • 37
    • 0033824517 scopus 로고    scopus 로고
    • Genetic and epigenetic interactions in allopolyploid plants
    • Comai L (2000) Genetic and epigenetic interactions in allopolyploid plants. Plant Mol Biol 43 (2-3), 387-399.
    • (2000) Plant Mol Biol , vol.43 , Issue.2-3 , pp. 387-399
    • Comai, L.1
  • 38
    • 56549119570 scopus 로고    scopus 로고
    • Turning a hobby into a job: How duplicated genes find new functions
    • Conant GC, Wolfe KH (2008) Turning a hobby into a job: how duplicated genes find new functions. Nat Rev Genet 9(12):938-950
    • (2008) Nat Rev Genet , vol.9 , Issue.12 , pp. 938-950
    • Conant, G.C.1    Wolfe, K.H.2
  • 41
    • 7444240757 scopus 로고    scopus 로고
    • Towards the reconstruction of the bilaterian ancestral pre-MHC region
    • Danchin EG, Pontarotti P (2004) Towards the reconstruction of the bilaterian ancestral pre-MHC region. Trends Genet 20(12):587-591
    • (2004) Trends Genet , vol.20 , Issue.12 , pp. 587-591
    • Danchin, E.G.1    Pontarotti, P.2
  • 42
    • 26444603772 scopus 로고    scopus 로고
    • Two rounds of whole genome duplication in the ancestral vertebrate
    • Dehal P, Boore JL (2005) Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol 3(10):e314
    • (2005) PLoS Biol , vol.3 , Issue.10 , pp. e314
    • Dehal, P.1    Boore, J.L.2
  • 44
    • 33644536713 scopus 로고    scopus 로고
    • Tunicates and not cephalochordates are the closest living relatives of vertebrates
    • Delsuc F, Brinkmann H, Chourrout D, Philippe H (2006) Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 439(7079):965-968
    • (2006) Nature , vol.439 , Issue.7079 , pp. 965-968
    • Delsuc, F.1    Brinkmann, H.2    Chourrout, D.3    Philippe, H.4
  • 46
    • 45549092346 scopus 로고    scopus 로고
    • The origin and evolution of the neural crest
    • Donoghue PC, Graham A, Kelsh RN (2008) The origin and evolution of the neural crest. BioEssays 30(6):530-541
    • (2008) Bio Essays , vol.30 , Issue.6 , pp. 530-541
    • Donoghue, P.C.1    Graham, A.2    Kelsh, R.N.3
  • 47
    • 0037213551 scopus 로고    scopus 로고
    • Vertebrate evolution: Doubling and shuffling with a full deck
    • Durand D (2003) Vertebrate evolution: doubling and shuffling with a full deck. Trends Genet 19(1):2-5
    • (2003) Trends Genet , vol.19 , Issue.1 , pp. 2-5
    • Durand, D.1
  • 52
    • 0033827334 scopus 로고    scopus 로고
    • The amphioxus Hox cluster: Deuterostome posterior flexibility and Hox14
    • Ferrier DE, Minguillon C, Holland PW, Garcia-Fernandez J (2000) The amphioxus Hox cluster: deuterostome posterior flexibility and Hox14. Evol Dev 2(5):284-293
    • (2000) Evol Dev , vol.2 , Issue.5 , pp. 284-293
    • Ferrier, D.E.1    Minguillon, C.2    Holland, P.W.3    Garcia-Fernandez, J.4
  • 53
    • 0035884333 scopus 로고    scopus 로고
    • Amphioxus Evx genes: Implications for the evolution of the midbrain-hindbrain boundary and the chordate tailbud
    • Ferrier DEK, Minguillón C, Cebrián C, Garcia-Fernàndez J (2001) Amphioxus Evx genes: implications for the evolution of the midbrain-hindbrain boundary and the chordate tailbud. Dev Biol 237(2):270-281
    • (2001) Dev Biol , vol.237 , Issue.2 , pp. 270-281
    • Ferrier, D.E.K.1    Minguillón, C.2    Cebrián, C.3    Garcia-Fernàndez, J.4
  • 54
    • 0001495737 scopus 로고
    • The roles of speciation and divergence time in the loss of duplicate gene expression
    • Ferris SD, Portnoy SL, Whitt GS (1979) The roles of speciation and divergence time in the loss of duplicate gene expression. Theor Popul Biol 15(1):114-139
    • (1979) Theor Popul Biol , vol.15 , Issue.1 , pp. 114-139
    • Ferris, S.D.1    Portnoy, S.L.2    Whitt, G.S.3
  • 55
    • 42349096534 scopus 로고    scopus 로고
    • Transposable elements and the evolution of regulatory networks
    • Feschotte C (2008) Transposable elements and the evolution of regulatory networks. Nat Rev Genet 9(5):397-405
    • (2008) Nat Rev Genet , vol.9 , Issue.5 , pp. 397-405
    • Feschotte, C.1
  • 56
    • 0037092011 scopus 로고    scopus 로고
    • Hox cluster organization in the jawless vertebrate Petromyzon marinus
    • Force A, Amores A, Postlethwait JH (2002) Hox cluster organization in the jawless vertebrate Petromyzon marinus. J Exp Zool 294(1):30-46
    • (2002) J Exp Zool , vol.294 , Issue.1 , pp. 30-46
    • Force, A.1    Amores, A.2    Postlethwait, J.H.3
  • 57
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force A, Lynch M, Pickett FB, Amores A, Yan Y-L, Postlethwait J (1999) Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151(4):1531-1545
    • (1999) Genetics , vol.151 , Issue.4 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.-L.5    Postlethwait, J.6
  • 58
    • 0038024615 scopus 로고    scopus 로고
    • The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints
    • Fredriksson R, Lagerstrom MC, Lundin LG, Schioth HB (2003) The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints. Mol Pharmacol 63(6):1256-1272
    • (2003) Mol Pharmacol , vol.63 , Issue.6 , pp. 1256-1272
    • Fredriksson, R.1    Lagerstrom, M.C.2    Lundin, L.G.3    Schioth, H.B.4
  • 60
    • 0035179702 scopus 로고    scopus 로고
    • Pattern and timing of gene duplication in animal genomes
    • Friedman R, Hughes AL (2001) Pattern and timing of gene duplication in animal genomes. Genome Res 11(11):1842-1847
    • (2001) Genome Res , vol.11 , Issue.11 , pp. 1842-1847
    • Friedman, R.1    Hughes, A.L.2
  • 63
    • 0001119210 scopus 로고
    • Neural crest and the origin of vertebrates: A new head
    • Gans C, Northcutt RG (1983) Neural crest and the origin of vertebrates: a new head. Science 220:268-274
    • (1983) Science , vol.220 , pp. 268-274
    • Gans, C.1    Northcutt, R.G.2
  • 64
    • 28844477866 scopus 로고    scopus 로고
    • The genesis and evolution of homeobox gene clusters
    • Garcia-Fernandez J (2005) The genesis and evolution of homeobox gene clusters. Nat Rev Genet 6(12):881-892
    • (2005) Nat Rev Genet , vol.6 , Issue.12 , pp. 881-892
    • Garcia-Fernandez, J.1
  • 66
    • 0028065237 scopus 로고
    • Archetypal organization of the amphioxus Hox gene cluster
    • Garcia-Fernàndez J, Holland PW (1994) Archetypal organization of the amphioxus Hox gene cluster. Nature 370(6490):563-566
    • (1994) Nature , vol.370 , Issue.6490 , pp. 563-566
    • Garcia-Fernàndez, J.1    Holland, P.W.2
  • 67
    • 0030959648 scopus 로고    scopus 로고
    • DNA sequence evidence for the segmental allotetraploid origin of maize
    • Gaut BS, Doebley JF (1997) DNA sequence evidence for the segmental allotetraploid origin of maize. Proc Natl Acad Sci USA 94(13):6809-6814
    • (1997) Proc Natl Acad Sci USA , vol.94 , Issue.13 , pp. 6809-6814
    • Gaut, B.S.1    Doebley, J.F.2
  • 68
    • 34548820692 scopus 로고    scopus 로고
    • Evolution of the vertebrate twist family and synfunctionalization: A mechanism for differential gene loss through merging of expression domains
    • Gitelman I (2007) Evolution of the vertebrate twist family and synfunctionalization: a mechanism for differential gene loss through merging of expression domains. Mol Biol Evol 24(9): 1912-1925
    • (2007) Mol Biol Evol , vol.24 , Issue.9 , pp. 1912-1925
    • Gitelman, I.1
  • 69
    • 65349158393 scopus 로고    scopus 로고
    • Differential retention of metabolic genes following wholegenome duplication
    • Gout JF, Duret L, Kahn D (2009) Differential retention of metabolic genes following wholegenome duplication. Mol Biol Evol 26(5):1067-1072
    • (2009) Mol Biol Evol , vol.26 , Issue.5 , pp. 1067-1072
    • Gout, J.F.1    Duret, L.2    Kahn, D.3
  • 70
    • 0036613509 scopus 로고    scopus 로고
    • Age distribution of human gene families shows significant roles of both large-and small-scale duplications in vertebrate evolution
    • Gu X, Wang Y J G (2002) Age distribution of human gene families shows significant roles of both large-and small-scale duplications in vertebrate evolution. Nat Genet 31:205-209
    • (2002) Nat Genet , vol.31 , pp. 205-209
    • Gu, X.1    Wang, Y.J.G.2
  • 74
    • 34247855863 scopus 로고    scopus 로고
    • The locus of evolution: Evo devo and the genetics of adaptation
    • Hoekstra HE, Coyne JA (2007) The locus of evolution: evo devo and the genetics of adaptation. Evolution 61(5):995-1016
    • (2007) Evolution , vol.61 , Issue.5 , pp. 995-1016
    • Hoekstra, H.E.1    Coyne, J.A.2
  • 75
    • 84861376715 scopus 로고    scopus 로고
    • Whole-genome duplications spurred the functional diversification of the globin gene superfamily in vertebrates
    • Hoffmann FG, Opazo JC, Storz JF (2012) Whole-genome duplications spurred the functional diversification of the globin gene superfamily in vertebrates. Mol Biol Evol 29:303-312
    • (2012) Mol Biol Evol , vol.29 , pp. 303-312
    • Hoffmann, F.G.1    Opazo, J.C.2    Storz, J.F.3
  • 76
    • 34248590374 scopus 로고    scopus 로고
    • Developmental biology: A chordate with a difference
    • Holland LZ (2007) Developmental biology: a chordate with a difference. Nature 447(7141):153-155
    • (2007) Nature , vol.447 , Issue.7141 , pp. 153-155
    • Holland, L.Z.1
  • 77
    • 70349289052 scopus 로고    scopus 로고
    • Chordate roots of the vertebrate nervous system: Expanding the molecular toolkit
    • Holland LZ (2009) Chordate roots of the vertebrate nervous system: expanding the molecular toolkit. Nat Rev Neurosci 10(10):736-746
    • (2009) Nat Rev Neurosci , vol.10 , Issue.10 , pp. 736-746
    • Holland, L.Z.1
  • 79
    • 53549099690 scopus 로고    scopus 로고
    • Gene duplication, co-option and recruitment during the origin of the vertebrate brain from the invertebrate chordate brain
    • Holland LZ, Short S (2008) Gene duplication, co-option and recruitment during the origin of the vertebrate brain from the invertebrate chordate brain. Brain Behav Evol 72(2):91-105
    • (2008) Brain Behav Evol , vol.72 , Issue.2 , pp. 91-105
    • Holland, L.Z.1    Short, S.2
  • 81
    • 0029561722 scopus 로고
    • Conservation of Brachyury (T) genes in amphioxus and vertebrates: Developmental and evolutionary implications
    • Holland PWH, Koschorz B, Holland LZ, Herrmann BG (1995) Conservation of Brachyury (T) genes in amphioxus and vertebrates: developmental and evolutionary implications. Development 121:4283-4291
    • (1995) Development , vol.121 , pp. 4283-4291
    • Holland, P.W.H.1    Koschorz, B.2    Holland, L.Z.3    Herrmann, B.G.4
  • 82
    • 53549093299 scopus 로고    scopus 로고
    • Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement
    • Hufton AL, Groth D, Vingron M, Lehrach H, Poustka AJ, Panopoulou G (2008) Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement. Genome Res 18(10):1582-1591
    • (2008) Genome Res , vol.18 , Issue.10 , pp. 1582-1591
    • Hufton, A.L.1    Groth, D.2    Vingron, M.3    Lehrach, H.4    Poustka, A.J.5    Panopoulou, G.6
  • 83
    • 0028342845 scopus 로고
    • The evolution of functionally novel proteins after gene duplication
    • Hughes AL (1994) The evolution of functionally novel proteins after gene duplication. Proc Roy Soc Lond B 256:119-124
    • (1994) Proc Roy Soc Lond B , vol.256 , pp. 119-124
    • Hughes, A.L.1
  • 84
    • 0032957497 scopus 로고    scopus 로고
    • Phylogenies of developmentally important proteins do not support the hypothesis of two rounds of genome duplication early in vertebrate history
    • Hughes AL (1999) Phylogenies of developmentally important proteins do not support the hypothesis of two rounds of genome duplication early in vertebrate history. J Mol Evol 48(5):565-576
    • (1999) J Mol Evol , vol.48 , Issue.5 , pp. 565-576
    • Hughes, A.L.1
  • 85
    • 0037266536 scopus 로고    scopus 로고
    • 2R or not 2R: Testing hypotheses of genome duplication in early vertebrates
    • Hughes AL, Friedman R (2003) 2R or not 2R: testing hypotheses of genome duplication in early vertebrates. J Struct Funct Genomics 3(1-4):85-93
    • (2003) J Struct Funct Genomics , vol.3 , Issue.1-4 , pp. 85-93
    • Hughes, A.L.1    Friedman, R.2
  • 86
    • 78649932630 scopus 로고    scopus 로고
    • 2R and remodeling of vertebrate signal transduction engine
    • Huminiecki L, Heldin CH (2010) 2R and remodeling of vertebrate signal transduction engine. BMC Biol 8:146
    • (2010) BMC Biol , vol.8 , pp. 146
    • Huminiecki, L.1    Heldin, C.H.2
  • 87
    • 62349128157 scopus 로고    scopus 로고
    • Gene regulatory networks underlying the compartmentalization of the Ciona central nervous system
    • Imai KS, Stolfi A, Levine M, Satou Y (2009) Gene regulatory networks underlying the compartmentalization of the Ciona central nervous system. Development 136(2):285-293
    • (2009) Development , vol.136 , Issue.2 , pp. 285-293
    • Imai, K.S.1    Stolfi, A.2    Levine, M.3    Satou, Y.4
  • 90
    • 34548435210 scopus 로고    scopus 로고
    • Chordate ancestry of the neural crest: New insights from ascidians
    • Jeffery WR (2007) Chordate ancestry of the neural crest: new insights from ascidians. Semin Cell Dev Biol 18:481-491
    • (2007) Semin Cell Dev Biol , vol.18 , pp. 481-491
    • Jeffery, W.R.1
  • 91
    • 55749097598 scopus 로고    scopus 로고
    • Trunk lateral cells are neural crest-like cells in the ascidian Ciona intestinalis: Insights into the ancestry and evolution of the neural crest
    • Jeffery WR, Chiba T, Krajka FR, Deyts C, Satoh N, Joly JS (2008) Trunk lateral cells are neural crest-like cells in the ascidian Ciona intestinalis: insights into the ancestry and evolution of the neural crest. Dev Biol 324(1):152-160
    • (2008) Dev Biol , vol.324 , Issue.1 , pp. 152-160
    • Jeffery, W.R.1    Chiba, T.2    Krajka, F.R.3    Deyts, C.4    Satoh, N.5    Joly, J.S.6
  • 92
    • 6044224907 scopus 로고    scopus 로고
    • Migratory neural crest-like cells form body pigmentation in a urochordate embryo
    • Jeffery WR, Strickler AG, Yamamoto Y (2004) Migratory neural crest-like cells form body pigmentation in a urochordate embryo. Nature 431(7009):696-699
    • (2004) Nature , vol.431 , Issue.7009 , pp. 696-699
    • Jeffery, W.R.1    Strickler, A.G.2    Yamamoto, Y.3
  • 93
    • 70349527647 scopus 로고    scopus 로고
    • Implications of duplicated cisregulatory elements in the evolution of metazoans: The DDI model or how simplicity begets novelty
    • Jimenez-Delgado S, Pascual-Anaya J, Garcia-Fernandez J (2009) Implications of duplicated cisregulatory elements in the evolution of metazoans: the DDI model or how simplicity begets novelty. Brief Funct Genomic Proteomic 8(4):266-275
    • (2009) Brief Funct Genomic Proteomic , vol.8 , Issue.4 , pp. 266-275
    • Jimenez-Delgado, S.1    Pascual-Anaya, J.2    Garcia-Fernandez, J.3
  • 94
    • 0024707103 scopus 로고
    • Two steps in the evolution of Antennapedia-class vertebrate homeobox genes
    • Kappen C, Schughart K, Ruddle FH (1989) Two steps in the evolution of Antennapedia-class vertebrate homeobox genes. Proc Natl Acad Sci USA 86(14):5459-5463
    • (1989) Proc Natl Acad Sci USA , vol.86 , Issue.14 , pp. 5459-5463
    • Kappen, C.1    Schughart, K.2    Ruddle, F.H.3
  • 95
    • 0033849018 scopus 로고    scopus 로고
    • Molecular evolution of calmodulin and calmodulin-like genes in the cephalochordate Branchiostoma
    • Karabinos A, Bhattacharya D (2000) Molecular evolution of calmodulin and calmodulin-like genes in the cephalochordate Branchiostoma. J Mol Evol 51(2):141-148
    • (2000) J Mol Evol , vol.51 , Issue.2 , pp. 141-148
    • Karabinos, A.1    Bhattacharya, D.2
  • 96
    • 34648816680 scopus 로고    scopus 로고
    • The 2R hypothesis an update
    • Kasahara M (2007) The 2R hypothesis: an update. Curr Opin Immunol 19(5):547-552
    • (2007) Curr Opin Immunol , vol.19 , Issue.5 , pp. 547-552
    • Kasahara, M.1
  • 97
    • 68149176813 scopus 로고    scopus 로고
    • Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates
    • Kassahn KS, Dang VT, Wilkins SJ, Perkins AC, Ragan MA (2009) Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates. Genome Res 19(8):1404-1418
    • (2009) Genome Res , vol.19 , Issue.8 , pp. 1404-1418
    • Kassahn, K.S.1    Dang, V.T.2    Wilkins, S.J.3    Perkins, A.C.4    Ragan, M.A.5
  • 98
    • 0030200739 scopus 로고    scopus 로고
    • Paralogy mapping: Identification of a region in the human MHC triplicated onto human chromosomes 1 and 9 allows the prediction and isolation of novel PBX and NOTCH loci
    • Katsanis N, Fitzgibbon J, Fisher EMC (1996) Paralogy mapping: identification of a region in the human MHC triplicated onto human chromosomes 1 and 9 allows the prediction and isolation of novel PBX and NOTCH loci. Genomics 35:101-108
    • (1996) Genomics , vol.35 , pp. 101-108
    • Katsanis, N.1    Fitzgibbon, J.2    Fisher, E.M.C.3
  • 100
    • 56849126764 scopus 로고    scopus 로고
    • Insights into cyclostome phylogenomics: Pre-2R or post-2R
    • Kuraku S (2008) Insights into cyclostome phylogenomics: pre-2R or post-2R. Zoolog Sci 25(10):960-968
    • (2008) Zoolog Sci , vol.25 , Issue.10 , pp. 960-968
    • Kuraku, S.1
  • 101
    • 77954927657 scopus 로고    scopus 로고
    • Palaeophylogenomics of the vertebrate ancestor-impact of hidden paralogy on hagfish and lamprey gene phylogeny
    • Kuraku S (2010) Palaeophylogenomics of the vertebrate ancestor-impact of hidden paralogy on hagfish and lamprey gene phylogeny. Integr Comp Biol 50(1):124-129
    • (2010) Integr Comp Biol , vol.50 , Issue.1 , pp. 124-129
    • Kuraku, S.1
  • 102
    • 79960714887 scopus 로고    scopus 로고
    • Hox gene clusters of early vertebrates: Do they serve as reliable markers for genome evolution?
    • Kuraku S (2011) Hox gene clusters of early vertebrates: do they serve as reliable markers for genome evolution? Genomics Proteomics Bioinformatics 9(3):97-103
    • (2011) Genomics Proteomics Bioinformatics , vol.9 , Issue.3 , pp. 97-103
    • Kuraku, S.1
  • 103
    • 57749184792 scopus 로고    scopus 로고
    • Timing of genome duplications relative to the origin of the vertebrates: Did cyclostomes diverge before or after?
    • Kuraku S, Meyer A, Kuratani S (2009) Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after? Mol Biol Evol 26(1):47-59
    • (2009) Mol Biol Evol , vol.26 , Issue.1 , pp. 47-59
    • Kuraku, S.1    Meyer, A.2    Kuratani, S.3
  • 104
    • 68549117302 scopus 로고    scopus 로고
    • Insights into neural crest migration and differentiation from experimental embryology
    • Kuratani S (2009) Insights into neural crest migration and differentiation from experimental embryology. Development 136(10):1585-1589
    • (2009) Development , vol.136 , Issue.10 , pp. 1585-1589
    • Kuratani, S.1
  • 105
    • 38849108880 scopus 로고    scopus 로고
    • Hagfish (cyclostomata, vertebrata): Searching for the ancestral developmental plan of vertebrates
    • Kuratani S, Ota KG (2008) Hagfish (cyclostomata, vertebrata): searching for the ancestral developmental plan of vertebrates. BioEssays 30(2):167-172
    • (2008) BioEssays , vol.30 , Issue.2 , pp. 167-172
    • Kuratani, S.1    Ota, K.G.2
  • 107
    • 0036911725 scopus 로고    scopus 로고
    • The human Hox-bearing chromosome regions did arise by block or chromosome (or even genome) duplications
    • Larhammar D, Lundin L, Hallbook F (2002) The human Hox-bearing chromosome regions did arise by block or chromosome (or even genome) duplications. Genome Res 12(12): 1910-1920
    • (2002) Genome Res , vol.12 , Issue.12 , pp. 1910-1920
    • Larhammar, D.1    Lundin, L.2    Hallbook, F.3
  • 108
    • 34248638447 scopus 로고    scopus 로고
    • Evolutionary conservation of microRNA regulatory circuits: An examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny
    • Lee CT, Risom T, Strauss WM (2007) Evolutionary conservation of microRNA regulatory circuits: an examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny. DNA Cell Biol 26(4):209-218
    • (2007) DNA Cell Biol , vol.26 , Issue.4 , pp. 209-218
    • Lee, C.T.1    Risom, T.2    Strauss, W.M.3
  • 110
    • 84859080996 scopus 로고    scopus 로고
    • How much does the amphioxus genome represent the ancestor of chordates?
    • Louis A, Roest Crollius H, Robinson-Rechavi M (2012) How much does the amphioxus genome represent the ancestor of chordates? Brief Funct Genomics 11(2):89-95
    • (2012) Brief Funct Genomics , vol.11 , Issue.2 , pp. 89-95
    • Louis, A.1    Roest Crollius, H.2    Robinson-Rechavi, M.3
  • 111
    • 34249937354 scopus 로고    scopus 로고
    • Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
    • Lowe CB, Bejerano G, Haussler D (2007) Thousands of human mobile element fragments undergo strong purifying selection near developmental genes. Proc Natl Acad Sci USA 104(19):8005-8010
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.19 , pp. 8005-8010
    • Lowe, C.B.1    Bejerano, G.2    Haussler, D.3
  • 112
    • 0018295410 scopus 로고
    • Evolutionary conservation of large chromosomal segments reflected in mammalian gene maps
    • Lundin LG (1979) Evolutionary conservation of large chromosomal segments reflected in mammalian gene maps. Clin Genet 16(2):72-81
    • (1979) Clin Genet , vol.16 , Issue.2 , pp. 72-81
    • Lundin, L.G.1
  • 113
    • 0027284770 scopus 로고
    • Evolution of the vertebrate genome as relected in paralogous chromosomal regions in man and the house mouse
    • Lundin LG (1993) Evolution of the vertebrate genome as relected in paralogous chromosomal regions in man and the house mouse. Genomics 16:1-19
    • (1993) Genomics , vol.16 , pp. 1-19
    • Lundin, L.G.1
  • 114
    • 0037263482 scopus 로고    scopus 로고
    • Numerous groups of chromosomal regional paralogies strongly indicate two genome doublings at the root of the vertebrates
    • Lundin LG, Larhammar D, Hallbook F (2003) Numerous groups of chromosomal regional paralogies strongly indicate two genome doublings at the root of the vertebrates. J Struct Funct Genomics 3(1-4):53-63
    • (2003) J Struct Funct Genomics , vol.3 , Issue.1-4 , pp. 53-63
    • Lundin, L.G.1    Larhammar, D.2    Hallbook, F.3
  • 115
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of gene duplication
    • Lynch M, Conery J (2000) The evolutionary fate and consequences of gene duplication. Science 290(5494):1151-1155
    • (2000) Science , vol.290 , Issue.5494 , pp. 1151-1155
    • Lynch, M.1    Conery, J.2
  • 116
    • 0034529964 scopus 로고    scopus 로고
    • The origin of interspecific genomic incompatibility via gene duplication
    • Lynch M, Force A (2000) The origin of interspecific genomic incompatibility via gene duplication. Am Nat 156:590-605
    • (2000) Am Nat , vol.156 , pp. 590-605
    • Lynch, M.1    Force, A.2
  • 117
    • 0035697435 scopus 로고    scopus 로고
    • The probability of preservation of a newly arisen gene duplicate
    • Lynch M, O'Hely M, Walsh B, Force A (2001) The probability of preservation of a newly arisen gene duplicate. Genetics 159(4):1789-1804
    • (2001) Genetics , vol.159 , Issue.4 , pp. 1789-1804
    • Lynch, M.1    O'Hely, M.2    Walsh, B.3    Force, A.4
  • 118
    • 80055010534 scopus 로고    scopus 로고
    • Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals
    • Lynch VJ, Leclerc RD, May G, Wagner GP (2011) Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals. Nat Genet 43:1154-1159
    • (2011) Nat Genet , vol.43 , pp. 1154-1159
    • Lynch, V.J.1    Leclerc, R.D.2    May, G.3    Wagner, G.P.4
  • 119
    • 59249092524 scopus 로고    scopus 로고
    • Multiple chromosomal rearrangements structured the ancestral vertebrate Hox-bearing protochromosomes
    • Lynch VJ, Wagner GP (2009) Multiple chromosomal rearrangements structured the ancestral vertebrate Hox-bearing protochromosomes. PLoS Genet 5(1):e1000349
    • (2009) PLoS Genet , vol.5 , Issue.1 , pp. e1000349
    • Lynch, V.J.1    Wagner, G.P.2
  • 120
    • 77952679366 scopus 로고    scopus 로고
    • Ohnologs in the human genome are dosage balanced and frequently associated with disease
    • Makino T, McLysaght A (2010) Ohnologs in the human genome are dosage balanced and frequently associated with disease. Proc Natl Acad Sci USA 107(20):9270-9274
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.20 , pp. 9270-9274
    • Makino, T.1    McLysaght, A.2
  • 123
    • 0033832421 scopus 로고    scopus 로고
    • Transgene silencing by the host genome defense: Implications for the evolution of epigenetic control mechanisms in plants and vertebrates
    • Matzke MA, Mette MF, Matzke AJ (2000) Transgene silencing by the host genome defense: implications for the evolution of epigenetic control mechanisms in plants and vertebrates. Plant Mol Biol 43(2-3):401-415
    • (2000) Plant Mol Biol , vol.43 , Issue.2-3 , pp. 401-415
    • Matzke, M.A.1    Mette, M.F.2    Matzke, A.J.3
  • 124
    • 20444400817 scopus 로고    scopus 로고
    • Molecular evidence from Ciona intestinalis for the evolutionary origin of vertebrate sensory placodes
    • Mazet F, Hutt JA, Milloz J, Millard J, Graham A, Shimeld SM (2005) Molecular evidence from Ciona intestinalis for the evolutionary origin of vertebrate sensory placodes. Dev Biol 282(2):494-508
    • (2005) Dev Biol , vol.282 , Issue.2 , pp. 494-508
    • Mazet, F.1    Hutt, J.A.2    Milloz, J.3    Millard, J.4    Graham, A.5    Shimeld, S.M.6
  • 125
    • 0034917298 scopus 로고    scopus 로고
    • Consequences of Hox gene duplication in the vertebrates: An investigation of the zebrafish Hox paralogue group 1 genes
    • McClintock JM, Carlson R, Mann DM, Prince VE (2001) Consequences of Hox gene duplication in the vertebrates: an investigation of the zebrafish Hox paralogue group 1 genes. Development 128(13):2471-2484
    • (2001) Development , vol.128 , Issue.13 , pp. 2471-2484
    • McClintock, J.M.1    Carlson, R.2    Mann, D.M.3    Prince, V.E.4
  • 126
    • 0036613237 scopus 로고    scopus 로고
    • Extensive genomic duplication during early chordate evolution
    • McLysaght A, Hokamp K, Wolfe KH (2002) Extensive genomic duplication during early chordate evolution. Nat Genet 31:200-204
    • (2002) Nat Genet , vol.31 , pp. 200-204
    • McLysaght, A.1    Hokamp, K.2    Wolfe, K.H.3
  • 127
    • 4544378019 scopus 로고    scopus 로고
    • Gene-regulatory interactions in neural crest evolution and development
    • Meulemans D, Bronner-Fraser M (2004) Gene-regulatory interactions in neural crest evolution and development. Dev Cell 7(3):291-299
    • (2004) Dev Cell , vol.7 , Issue.3 , pp. 291-299
    • Meulemans, D.1    Bronner-Fraser, M.2
  • 128
    • 24944497698 scopus 로고    scopus 로고
    • Central role of gene cooption in neural crest evolution
    • Meulemans D, Bronner-Fraser M (2005) Central role of gene cooption in neural crest evolution. J Exp Zoolog B Mol Dev Evol 304(4):298-303
    • (2005) J Exp Zoolog B Mol Dev Evol , vol.304 , Issue.4 , pp. 298-303
    • Meulemans, D.1    Bronner-Fraser, M.2
  • 129
    • 40749098581 scopus 로고    scopus 로고
    • Insights from amphioxus into the evolution of vertebrate cartilage
    • Meulemans D, Bronner-Fraser M (2007) Insights from amphioxus into the evolution of vertebrate cartilage. PLoS One 2(8):e787
    • (2007) PLoS One , vol.2 , Issue.8 , pp. e787
    • Meulemans, D.1    Bronner-Fraser, M.2
  • 130
    • 0037012574 scopus 로고    scopus 로고
    • Gene duplications in the prototypical cephalochordate amphioxus
    • Minguillon C, Ferrier DE, Cebrian C, Garcia-Fernandez J (2002) Gene duplications in the prototypical cephalochordate amphioxus. Gene 287(1-2):121-128
    • (2002) Gene , vol.287 , Issue.1-2 , pp. 121-128
    • Minguillon, C.1    Ferrier, D.E.2    Cebrian, C.3    Garcia-Fernandez, J.4
  • 132
    • 77951972053 scopus 로고    scopus 로고
    • Genomicus: A database and a browser to study gene synteny in modern and ancestral genomes
    • Muffato M, Louis A, Poisnel CE, Roest Crollius H (2010) Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes. Bioinformatics 26(8):1119-1121
    • (2010) Bioinformatics , vol.26 , Issue.8 , pp. 1119-1121
    • Muffato, M.1    Louis, A.2    Poisnel, C.E.3    Roest Crollius, H.4
  • 133
    • 0030716471 scopus 로고    scopus 로고
    • Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution
    • Nadeau JH, Sankoff D (1997) Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution. Genetics 147(3):1259-1266
    • (1997) Genetics , vol.147 , Issue.3 , pp. 1259-1266
    • Nadeau, J.H.1    Sankoff, D.2
  • 134
    • 34548420992 scopus 로고    scopus 로고
    • Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates
    • Nakatani Y, Takeda H, Kohara Y, Morishita S (2007) Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates. Genome Res 17(9):1254-1265
    • (2007) Genome Res , vol.17 , Issue.9 , pp. 1254-1265
    • Nakatani, Y.1    Takeda, H.2    Kohara, Y.3    Morishita, S.4
  • 135
    • 2442697672 scopus 로고    scopus 로고
    • A medaka gene map: The trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping
    • Naruse K, Tanaka M, Mita K, Shima A, Postlethwait J, Mitani H (2004) A medaka gene map: the trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping. Genome Res 14(5):820-828
    • (2004) Genome Res , vol.14 , Issue.5 , pp. 820-828
    • Naruse, K.1    Tanaka, M.2    Mita, K.3    Shima, A.4    Postlethwait, J.5    Mitani, H.6
  • 137
    • 63649142944 scopus 로고    scopus 로고
    • Chapter 1. Gene regulatory networks in neural crest development and evolution
    • Nikitina N, Sauka-Spengler T, Bronner-Fraser M (2009) Chapter 1. Gene regulatory networks in neural crest development and evolution. Curr Top Dev Biol 86:1-14
    • (2009) Curr Top Dev Biol , vol.86 , pp. 1-14
    • Nikitina, N.1    Sauka-Spengler, T.2    Bronner-Fraser, M.3
  • 138
    • 0020725070 scopus 로고
    • The genesis of neural crest and epidermal placodes: A reinterpretation of vertebrate origins
    • Northcutt RG, Gans C (1983) The genesis of neural crest and epidermal placodes: a reinterpretation of vertebrate origins. Quart Rev Biol 58:1-28
    • (1983) Quart Rev Biol , vol.58 , pp. 1-28
    • Northcutt, R.G.1    Gans, C.2
  • 140
    • 18744376567 scopus 로고    scopus 로고
    • A novel amphioxus cadherin that localizes to epithelial adherens junctions has an unusual domain organization with implications for chordate phylogeny
    • Oda H, Wada H, Tagawa K, Akiyama-Oda Y, Satoh N, Humphreys T, Zhang S, Tsukita S (2002) A novel amphioxus cadherin that localizes to epithelial adherens junctions has an unusual domain organization with implications for chordate phylogeny. Evol Dev 4(6):426-434
    • (2002) Evol Dev , vol.4 , Issue.6 , pp. 426-434
    • Oda, H.1    Wada, H.2    Tagawa, K.3    Akiyama-Oda, Y.4    Satoh, N.5    Humphreys, T.6    Zhang, S.7    Tsukita, S.8
  • 142
    • 0014237181 scopus 로고
    • Evolution from fish to mammals by gene duplication
    • Ohno S, Wolf U, Atkins NB (1968) Evolution from fish to mammals by gene duplication. Hereditas 59(1):169-187
    • (1968) Hereditas , vol.59 , Issue.1 , pp. 169-187
    • Ohno, S.1    Wolf, U.2    Atkins, N.B.3
  • 143
    • 34548454155 scopus 로고    scopus 로고
    • Cyclostome embryology and early evolutionary history of vertebrates
    • Ota KG, Kuratani S (2007) Cyclostome embryology and early evolutionary history of vertebrates. Integr Comp Biol 47(3):329-337
    • (2007) Integr Comp Biol , vol.47 , Issue.3 , pp. 329-337
    • Ota, K.G.1    Kuratani, S.2
  • 144
    • 35548954250 scopus 로고    scopus 로고
    • The evolutionary consequences of polyploidy
    • Otto SP (2007) The evolutionary consequences of polyploidy. Cell 131(3):452-462
    • (2007) Cell , vol.131 , Issue.3 , pp. 452-462
    • Otto, S.P.1
  • 145
    • 0038817812 scopus 로고    scopus 로고
    • New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes
    • Panopoulou G, Hennig S, Groth D, Krause A, Poustka AJ, Herwig R, Vingron M, Lehrach H (2003) New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes. Genome Res 13(6A):1056-1066
    • (2003) Genome Res , vol.13 , Issue.6 A , pp. 1056-1066
    • Panopoulou, G.1    Hennig, S.2    Groth, D.3    Krause, A.4    Poustka, A.J.5    Herwig, R.6    Vingron, M.7    Lehrach, H.8
  • 146
    • 84859081554 scopus 로고    scopus 로고
    • A genome-wide view of transcription factor gene diversity in chordate evolution: Less gene loss in amphioxus?
    • Paps J, Holland PW, Shimeld SM (2012) A genome-wide view of transcription factor gene diversity in chordate evolution: less gene loss in amphioxus? Brief Funct Genomics 11(2):177-186
    • (2012) Brief Funct Genomics , vol.11 , Issue.2 , pp. 177-186
    • Paps, J.1    Holland, P.W.2    Shimeld, S.M.3
  • 148
    • 33750173564 scopus 로고    scopus 로고
    • Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon
    • Paterson AH, Chapman BA, Kissinger JC, Bowers JE, Feltus FA, Estill JC (2006) Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon. Trends Genet 22(11):597-602
    • (2006) Trends Genet , vol.22 , Issue.11 , pp. 597-602
    • Paterson, A.H.1    Chapman, B.A.2    Kissinger, J.C.3    Bowers, J.E.4    Feltus, F.A.5    Estill, J.C.6
  • 149
    • 0031828161 scopus 로고    scopus 로고
    • Ancient large-scale genome duplications: Phylogenetic and linkage analyses shed light on chordate genome evolution
    • Pebusque MJ, Coulier F, Birnbaum D, Pontarotti P (1998) Ancient large-scale genome duplications: phylogenetic and linkage analyses shed light on chordate genome evolution. Mol Biol Evol 15(9):1145-1159
    • (1998) Mol Biol Evol , vol.15 , Issue.9 , pp. 1145-1159
    • Pebusque, M.J.1    Coulier, F.2    Birnbaum, D.3    Pontarotti, P.4
  • 151
    • 33746377600 scopus 로고    scopus 로고
    • Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes
    • Polak P, Domany E (2006) Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes. BMC Genomics 7:133
    • (2006) BMC Genomics , vol.7 , pp. 133
    • Polak, P.1    Domany, E.2
  • 153
    • 4444340536 scopus 로고    scopus 로고
    • Subfunction partitioning, the teleost radiation and the annotation of the human genome
    • Postlethwait J, Amores A, Cresko W, Singer A, Yan YL (2004) Subfunction partitioning, the teleost radiation and the annotation of the human genome. Trends Genet 20(10):481-490
    • (2004) Trends Genet , vol.20 , Issue.10 , pp. 481-490
    • Postlethwait, J.1    Amores, A.2    Cresko, W.3    Singer, A.4    Yan, Y.L.5
  • 154
    • 34948908604 scopus 로고    scopus 로고
    • The zebrafish genome in context: Ohnologs gone missing
    • Postlethwait JH (2007) The zebrafish genome in context: ohnologs gone missing. J Exp Zoolog B Mol Dev Evol 308(5):563-577
    • (2007) J Exp Zoolog B Mol Dev Evol , vol.308 , Issue.5 , pp. 563-577
    • Postlethwait, J.H.1
  • 156
    • 70349522026 scopus 로고    scopus 로고
    • Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes
    • Ravi V, Lam K, Tay BH, Tay A, Brenner S, Venkatesh B (2009) Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes. Proc Natl Acad Sci USA 106(38):16327-16332
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.38 , pp. 16327-16332
    • Ravi, V.1    Lam, K.2    Tay, B.H.3    Tay, A.4    Brenner, S.5    Venkatesh, B.6
  • 157
    • 1542719902 scopus 로고    scopus 로고
    • Phylogenetic dating and characterization of gene duplications in vertebrates: The cartilaginous fish reference
    • Robinson-Rechavi M, Boussau B, Laudet V (2004) Phylogenetic dating and characterization of gene duplications in vertebrates: the cartilaginous fish reference. Mol Biol Evol 21(3): 580-586
    • (2004) Mol Biol Evol , vol.21 , Issue.3 , pp. 580-586
    • Robinson-Rechavi, M.1    Boussau, B.2    Laudet, V.3
  • 158
    • 58149149757 scopus 로고    scopus 로고
    • Developmental constraints on vertebrate genome evolution
    • Roux J, Robinson-Rechavi M (2008) Developmental constraints on vertebrate genome evolution. PLoS Genet 4(12):e1000311
    • (2008) PLoS Genet , vol.4 , Issue.12 , pp. e1000311
    • Roux, J.1    Robinson-Rechavi, M.2
  • 159
    • 0031104878 scopus 로고    scopus 로고
    • Newly identified paralogous groups on mouse chromosomes 5 and 11 reveal the age of a T-box cluster duplication
    • Ruvinsky I, Silver LM (1997) Newly identified paralogous groups on mouse chromosomes 5 and 11 reveal the age of a T-box cluster duplication. Genomics 40(2):262-266
    • (1997) Genomics , vol.40 , Issue.2 , pp. 262-266
    • Ruvinsky, I.1    Silver, L.M.2
  • 162
    • 34548168615 scopus 로고    scopus 로고
    • Ancient evolutionary origin of the neural crest gene regulatory network
    • Sauka-Spengler T, Meulemans D, Jones M, Bronner-Fraser M (2007) Ancient evolutionary origin of the neural crest gene regulatory network. Dev Cell 13(3):405-420
    • (2007) Dev Cell , vol.13 , Issue.3 , pp. 405-420
    • Sauka-Spengler, T.1    Meulemans, D.2    Jones, M.3    Bronner-Fraser, M.4
  • 163
    • 33645023614 scopus 로고    scopus 로고
    • Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
    • Scannell DR, Byrne KP, Gordon JL, Wong S, Wolfe KH (2006) Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 440(7082):341-345
    • (2006) Nature , vol.440 , Issue.7082 , pp. 341-345
    • Scannell, D.R.1    Byrne, K.P.2    Gordon, J.L.3    Wong, S.4    Wolfe, K.H.5
  • 164
    • 36549038087 scopus 로고    scopus 로고
    • Consequences of genome duplication
    • Semon M, Wolfe KH (2007) Consequences of genome duplication. Curr Opin Genet Dev 17(6):505-512
    • (2007) Curr Opin Genet Dev , vol.17 , Issue.6 , pp. 505-512
    • Semon, M.1    Wolfe, K.H.2
  • 165
    • 46149123448 scopus 로고    scopus 로고
    • Preferential subfunctionalization of slow-evolving genes after allopolyploidization in Xenopus laevis
    • Semon M, Wolfe KH (2008) Preferential subfunctionalization of slow-evolving genes after allopolyploidization in Xenopus laevis. Proc Natl Acad Sci USA 105(24):8333-8338
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.24 , pp. 8333-8338
    • Semon, M.1    Wolfe, K.H.2
  • 166
    • 33845608152 scopus 로고    scopus 로고
    • The phylogenetic distribution of metazoan microRNAs: Insights into evolutionary complexity and constraint
    • Sempere LF, Cole CN, McPeek MA, Peterson KJ (2006) The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint. J Exp Zool B Mol Dev Evol 306(6):575-588
    • (2006) J Exp Zool B Mol Dev Evol , vol.306 , Issue.6 , pp. 575-588
    • Sempere, L.F.1    Cole, C.N.2    McPeek, M.A.3    Peterson, K.J.4
  • 168
    • 0031780257 scopus 로고    scopus 로고
    • Estimation of hox gene cluster number in lampreys
    • Sharman AC, Holland PWH (1998) Estimation of hox gene cluster number in lampreys. Int J Dev Biol 42:617-620
    • (1998) Int J Dev Biol , vol.42 , pp. 617-620
    • Sharman, A.C.1    Pwh, H.2
  • 169
    • 0034103096 scopus 로고    scopus 로고
    • Fusomorphogenesis: Cell fusion in organ formation
    • Shemer G, Podbilewicz B (2000) Fusomorphogenesis: cell fusion in organ formation. Dev Dyn 218(1):30-51
    • (2000) Dev Dyn , vol.218 , Issue.1 , pp. 30-51
    • Shemer, G.1    Podbilewicz, B.2
  • 171
    • 0030473920 scopus 로고    scopus 로고
    • Gen(om)e duplications in the evolution of early vertebrates
    • Sidow A (1996) Gen(om)e duplications in the evolution of early vertebrates. Curr Opin Genet Dev 6:715-722
    • (1996) Curr Opin Genet Dev , vol.6 , pp. 715-722
    • Sidow, A.1
  • 172
    • 35248812530 scopus 로고    scopus 로고
    • Comparative genomics of ParaHox clusters of teleost fishes: Gene cluster breakup and the retention of gene sets following whole genome duplications
    • Siegel N, Hoegg S, Salzburger W, Braasch I, Meyer A (2007) Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications. BMC Genomics 8:312
    • (2007) BMC Genomics , vol.8 , pp. 312
    • Siegel, N.1    Hoegg, S.2    Salzburger, W.3    Braasch, I.4    Meyer, A.5
  • 173
    • 0031795610 scopus 로고    scopus 로고
    • Eukaryote genome duplication-where's the evidence?
    • Skrabanek L, Wolfe KH (1998) Eukaryote genome duplication-where's the evidence? Curr Opin Genet Dev 8:694-700
    • (1998) Curr Opin Genet Dev , vol.8 , pp. 694-700
    • Skrabanek, L.1    Wolfe, K.H.2
  • 174
    • 34250206347 scopus 로고    scopus 로고
    • A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome
    • Small KS, Brudno M, Hill MM, Sidow A (2007) A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome. Genome Biol 8(3):R41
    • (2007) Genome Biol , vol.8 , Issue.3 , pp. R41
    • Small, K.S.1    Brudno, M.2    Hill, M.M.3    Sidow, A.4
  • 176
    • 0033198094 scopus 로고    scopus 로고
    • Polyploidy: Recurrent formation and genome evolution
    • Soltis DE, Soltis PS (1999) Polyploidy: recurrent formation and genome evolution. Trends Ecol Evol 14(9):348-352
    • (1999) Trends Ecol Evol , vol.14 , Issue.9 , pp. 348-352
    • Soltis, D.E.1    Soltis, P.S.2
  • 177
    • 57649222020 scopus 로고    scopus 로고
    • Evidence for stasis and not genetic piracy in developmental expression patterns of Branchiostoma lanceolatum and Branchiostoma floridae, two amphioxus species that have evolved independently over the course of 200 Myr
    • Somorjai I, Bertrand S, Camasses A, Haguenauer A, Escriva H (2008) Evidence for stasis and not genetic piracy in developmental expression patterns of Branchiostoma lanceolatum and Branchiostoma floridae, two amphioxus species that have evolved independently over the course of 200 Myr. Dev Genes Evol 218(11-12):703-713
    • (2008) Dev Genes Evol , vol.218 , Issue.11-12 , pp. 703-713
    • Somorjai, I.1    Bertrand, S.2    Camasses, A.3    Haguenauer, A.4    Escriva, H.5
  • 178
    • 0031022113 scopus 로고    scopus 로고
    • Vertebrate evolution by interspecific hybridization-are we polyploid?
    • Spring J (1997) Vertebrate evolution by interspecific hybridization-are we polyploid? Fed Eur Biol Soc Lett 400:2-8
    • (1997) Fed Eur Biol Soc Lett , vol.400 , pp. 2-8
    • Spring, J.1
  • 179
    • 1842838629 scopus 로고    scopus 로고
    • Evidence for independent Hox gene duplications in the hagfish lineage: A PCR-based gene inventory of Eptatretus stoutii
    • Stadler PF, Fried C, Prohaska SJ, Bailey WJ, Misof BY, Ruddle FH, Wagner GP (2004) Evidence for independent Hox gene duplications in the hagfish lineage: a PCR-based gene inventory of Eptatretus stoutii. Mol Phylogenet Evol 32(3):686-694
    • (2004) Mol Phylogenet Evol , vol.32 , Issue.3 , pp. 686-694
    • Stadler, P.F.1    Fried, C.2    Prohaska, S.J.3    Bailey, W.J.4    Misof, B.Y.5    Ruddle, F.H.6    Wagner, G.P.7
  • 180
    • 0347762556 scopus 로고    scopus 로고
    • From polyploidy to aneuploidy, genome instability and cancer
    • Storchova Z, Pellman D (2004) From polyploidy to aneuploidy, genome instability and cancer. Nat Rev Mol Cell Biol 5(1):45-54
    • (2004) Nat Rev Mol Cell Biol , vol.5 , Issue.1 , pp. 45-54
    • Storchova, Z.1    Pellman, D.2
  • 182
    • 10944230777 scopus 로고    scopus 로고
    • Duplication and divergence: The evolution of new genes and old ideas
    • Taylor JS, Raes J (2004) Duplication and divergence: the evolution of new genes and old ideas. Annu Rev Genet 38:615-643
    • (2004) Annu Rev Genet , vol.38 , pp. 615-643
    • Taylor, J.S.1    Raes, J.2
  • 183
    • 0035368224 scopus 로고    scopus 로고
    • Genome duplication, divergent resolution and speciation
    • Taylor JS, van de Peer Y, Meyer M (2001) Genome duplication, divergent resolution and speciation. Trends Genet 17:299-301
    • (2001) Trends Genet , vol.17 , pp. 299-301
    • Taylor, J.S.1    Van De Peer, Y.2    Meyer, M.3
  • 184
    • 31844443500 scopus 로고    scopus 로고
    • Transposable elements as a significant source of transcription regulating signals
    • Thornburg BG, Gotea V, Makalowski W (2006) Transposable elements as a significant source of transcription regulating signals. Gene 365:104-110
    • (2006) Gene , vol.365 , pp. 104-110
    • Thornburg, B.G.1    Gotea, V.2    Makalowski, W.3
  • 185
    • 0141561907 scopus 로고    scopus 로고
    • Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
    • van de Lagemaat LN, Landry JR, Mager DL, Medstrand P (2003) Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions. Trends Genet 19(10):530-536
    • (2003) Trends Genet , vol.19 , Issue.10 , pp. 530-536
    • Van De Lagemaat, L.N.1    Landry, J.R.2    Mager, D.L.3    Medstrand, P.4
  • 186
    • 70349325524 scopus 로고    scopus 로고
    • The evolutionary significance of ancient genome duplications
    • Van de Peer Y, Maere S, Meyer A (2009) The evolutionary significance of ancient genome duplications. Nat Rev Genet 10(10):725-732
    • (2009) Nat Rev Genet , vol.10 , Issue.10 , pp. 725-732
    • Van De Peer, Y.1    Maere, S.2    Meyer, A.3
  • 189
    • 0242468325 scopus 로고    scopus 로고
    • Evolution of the proto-MHC ancestral region: More evidence for the plesiomorphic organisation of human chromosome 9q34 region
    • Vienne A, Shiina T, Abi-Rached L, Danchin E, Vitiello V, Cartault F, Inoko H, Pontarotti P (2003) Evolution of the proto-MHC ancestral region: more evidence for the plesiomorphic organisation of human chromosome 9q34 region. Immunogenetics 55(7):429-436
    • (2003) Immunogenetics , vol.55 , Issue.7 , pp. 429-436
    • Vienne, A.1    Shiina, T.2    Abi-Rached, L.3    Danchin, E.4    Vitiello, V.5    Cartault, F.6    Inoko, H.7    Pontarotti, P.8
  • 190
    • 33745666523 scopus 로고    scopus 로고
    • Molecular evolution of fibrillar collagen in chordates, with implications for the evolution of vertebrate skeletons and chordate phylogeny
    • Wada H, Okuyama M, Satoh N, Zhang S (2006) Molecular evolution of fibrillar collagen in chordates, with implications for the evolution of vertebrate skeletons and chordate phylogeny. Evol Dev 8(4):370-377
    • (2006) Evol Dev , vol.8 , Issue.4 , pp. 370-377
    • Wada, H.1    Okuyama, M.2    Satoh, N.3    Zhang, S.4
  • 191
    • 0001604836 scopus 로고
    • A model for divergent, allopatric speciation of polypoid pteridophytes resulting from silencing of duplicate-gene expression
    • Werth CR, Windham MD (1991) A model for divergent, allopatric speciation of polypoid pteridophytes resulting from silencing of duplicate-gene expression. Am Nat 137:515-526
    • (1991) Am Nat , vol.137 , pp. 515-526
    • Werth, C.R.1    Windham, M.D.2
  • 192
    • 0014710662 scopus 로고
    • The migration and differentiation of neural crest cells
    • Weston JA (1970) The migration and differentiation of neural crest cells. Adv Morphog 8:41-114
    • (1970) Adv Morphog , vol.8 , pp. 41-114
    • Weston, J.A.1
  • 193
    • 0034020782 scopus 로고    scopus 로고
    • Robustness-it's not where you think it is
    • Wolfe K (2000) Robustness-it's not where you think it is. Nat Genet 25(1):3-4
    • (2000) Nat Genet , vol.25 , Issue.1 , pp. 3-4
    • Wolfe, K.1
  • 194
    • 0035344021 scopus 로고    scopus 로고
    • Yesterday's polyploids and the mystery of diploidization
    • Wolfe KH (2001) Yesterday's polyploids and the mystery of diploidization. Nat Rev Genet 2(5):333-341
    • (2001) Nat Rev Genet , vol.2 , Issue.5 , pp. 333-341
    • Wolfe, K.H.1
  • 195
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • Wolfe KH, Shields DC (1997) Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387(6634):708-713
    • (1997) Nature , vol.387 , Issue.6634 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 196
    • 33750815718 scopus 로고    scopus 로고
    • Comparative genomics of vertebrate Fox cluster loci
    • Wotton KR, Shimeld SM (2006) Comparative genomics of vertebrate Fox cluster loci. BMC Genomics 7:271
    • (2006) BMC Genomics , vol.7 , pp. 271
    • Wotton, K.R.1    Shimeld, S.M.2
  • 197
    • 46449088112 scopus 로고    scopus 로고
    • Insights from the amphioxus genome on the origin of vertebrate neural crest
    • Yu JK, Meulemans D, McKeown SJ, Bronner-Fraser M (2008) Insights from the amphioxus genome on the origin of vertebrate neural crest. Genome Res 18(7):1127-1132
    • (2008) Genome Res , vol.18 , Issue.7 , pp. 1127-1132
    • Yu, J.K.1    Meulemans, D.2    McKeown, S.J.3    Bronner-Fraser, M.4


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