-
1
-
-
0033401933
-
Lateral genomics
-
1:CAS:528:DC%2BD3cXnt1Cnuw%3D%3D, 10611671, 10.1016/S0962-8924(99)01664-5
-
Doolittle WF: Lateral genomics. Trends Cell Biol 1999, 9:M5-M8.
-
(1999)
Trends Cell Biol
, vol.9
, pp. M5-M8
-
-
Doolittle, W.F.1
-
2
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
1:CAS:528:DyaK1MXkt1Kgsbs%3D, 10381871, 10.1126/science.284.5423.2124
-
Doolittle WF: Phylogenetic classification and the universal tree. Science 1999, 284:2124–2129.
-
(1999)
Science
, vol.284
, pp. 2124-2129
-
-
Doolittle, W.F.1
-
3
-
-
0034625235
-
The impact of comparative genomics on our understanding of evolution
-
1:CAS:528:DC%2BD3cXkt1Wrsbg%3D, 10892642, 10.1016/S0092-8674(00)80867-3
-
Koonin EV, Aravind L, Kondrashov AS: The impact of comparative genomics on our understanding of evolution. Cell 2000, 101:573–576.
-
(2000)
Cell
, vol.101
, pp. 573-576
-
-
Koonin, E.V.1
Aravind, L.2
Kondrashov, A.S.3
-
4
-
-
0034780910
-
Horizontal gene transfer in prokaryotes: quantification and classification
-
1:CAS:528:DC%2BD3MXnslKjtbw%3D, 11544372, 10.1146/annurev.micro.55.1.709
-
Koonin EV, Makarova KS, Aravind L: Horizontal gene transfer in prokaryotes: quantification and classification. Annu Rev Microbiol 2001, 55:709–742.
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 709-742
-
-
Koonin, E.V.1
Makarova, K.S.2
Aravind, L.3
-
5
-
-
0036143446
-
Genomes in flux: the evolution of archaeal and proteobacterial gene content
-
1:CAS:528:DC%2BD38XksV2rsQ%3D%3D, 11779827, 10.1101/gr.176501
-
Snel B, Bork P, Huynen MA: Genomes in flux: the evolution of archaeal and proteobacterial gene content. Genome Res 2002, 12:17–25.
-
(2002)
Genome Res
, vol.12
, pp. 17-25
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
6
-
-
0036898759
-
Prokaryotic evolution in light of gene transfer
-
1:CAS:528:DC%2BD38Xps12hsL4%3D, 12446813
-
Gogarten JP, Doolittle WF, Lawrence JG: Prokaryotic evolution in light of gene transfer. Mol Biol Evol 2002, 19:2226–2238.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 2226-2238
-
-
Gogarten, J.P.1
Doolittle, W.F.2
Lawrence, J.G.3
-
7
-
-
2942622384
-
Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes
-
12515582, 10.1186/1471-2148-3-2
-
Mirkin BG, Fenner TI, Galperin MY, Koonin EV: Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes. BMC Evol Biol 2003, 3:2.
-
(2003)
BMC Evol Biol
, vol.3
, pp. 2
-
-
Mirkin, B.G.1
Fenner, T.I.2
Galperin, M.Y.3
Koonin, E.V.4
-
8
-
-
0014800108
-
Distinguishing homologous from analogous proteins
-
1:CAS:528:DyaE3MXkvFyisw%3D%3D, 5449325, 10.2307/2412448
-
Fitch WM: Distinguishing homologous from analogous proteins. Syst Zool 1970, 19:99–106.
-
(1970)
Syst Zool
, vol.19
, pp. 99-106
-
-
Fitch, W.M.1
-
9
-
-
0034178257
-
Homology a personal view on some of the problems
-
1:CAS:528:DC%2BD3cXislegsL8%3D, 10782117, 10.1016/S0168-9525(00)02005-9
-
Fitch WM: Homology a personal view on some of the problems. Trends Genet 2000, 16:227–231.
-
(2000)
Trends Genet
, vol.16
, pp. 227-231
-
-
Fitch, W.M.1
-
10
-
-
0030660580
-
Gene families: the taxonomy of protein paralogs and chimeras
-
1:CAS:528:DyaK2sXmvVOrsLw%3D, 9381171, 10.1126/science.278.5338.609
-
Henikoff S, Greene EA, Pietrokovski S, Bork P, Attwood TK, Hood L: Gene families: the taxonomy of protein paralogs and chimeras. Science 1997, 278:609–614.
-
(1997)
Science
, vol.278
, pp. 609-614
-
-
Henikoff, S.1
Greene, E.A.2
Pietrokovski, S.3
Bork, P.4
Attwood, T.K.5
Hood, L.6
-
11
-
-
0036889686
-
Orthology, paralogy and proposed classification for paralog subtypes
-
1:CAS:528:DC%2BD38XoslCgu7k%3D, 12446146, 10.1016/S0168-9525(02)02793-2
-
Sonnhammer EL, Koonin EV: Orthology, paralogy and proposed classification for paralog subtypes. Trends Genet 2002, 18:619–620.
-
(2002)
Trends Genet
, vol.18
, pp. 619-620
-
-
Sonnhammer, E.L.1
Koonin, E.V.2
-
12
-
-
0034677669
-
Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores
-
1:CAS:528:DC%2BD3cXhsFSqu74%3D, 10704319, 10.1006/jmbi.2000.3550
-
Wilson CA, Kreychman J, Gerstein M: Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores. J Mol Biol 2000, 297:233–249.
-
(2000)
J Mol Biol
, vol.297
, pp. 233-249
-
-
Wilson, C.A.1
Kreychman, J.2
Gerstein, M.3
-
14
-
-
0002725360
-
Chemical paleogenetics. Molecular "restoration studies" of extinct forms of life
-
1:CAS:528:DyaF3sXkslKhsLY%3D, 10.3891/acta.chem.scand.17s-0009
-
Pauling L, Zuckerkandl E: Chemical paleogenetics. Molecular "restoration studies" of extinct forms of life. Acta Chem Scand 1963, 17:S9-S16.
-
(1963)
Acta Chem Scand
, vol.17
, pp. S9-S16
-
-
Pauling, L.1
Zuckerkandl, E.2
-
16
-
-
0033972072
-
The probability of duplicate gene preservation by subfunctionalization
-
1:CAS:528:DC%2BD3cXms1KhsA%3D%3D, 10629003
-
Lynch M, Force A: The probability of duplicate gene preservation by subfunctionalization. Genetics 2000, 154:459–473.
-
(2000)
Genetics
, vol.154
, pp. 459-473
-
-
Lynch, M.1
Force, A.2
-
17
-
-
0035863767
-
A phylogenomic approach to microbial evolution
-
1:CAS:528:DC%2BD3MXnt12gtg%3D%3D, 11139625, 10.1093/nar/29.2.545
-
Sicheritz-Ponten T, Andersson SG: A phylogenomic approach to microbial evolution. Nucleic Acids Res 2001, 29:545–552.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 545-552
-
-
Sicheritz-Ponten, T.1
Andersson, S.G.2
-
18
-
-
0013017592
-
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
-
12028595, 10.1186/1471-2105-3-14
-
Zmasek CM, Eddy SR: RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs. BMC Bioinformatics 2002, 3:14.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 14
-
-
Zmasek, C.M.1
Eddy, S.R.2
-
19
-
-
0036173130
-
Automated ortholog inference from phylogenetic trees and calculation of orthology reliability
-
1:CAS:528:DC%2BD38Xhs1elurs%3D, 11836216, 10.1093/bioinformatics/18.1.92
-
Storm CE, Sonnhammer EL: Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. Bioinformatics 2002, 18:92–99.
-
(2002)
Bioinformatics
, vol.18
, pp. 92-99
-
-
Storm, C.E.1
Sonnhammer, E.L.2
-
20
-
-
0030660581
-
A genomic perspective on protein families
-
1:CAS:528:DyaK2sXmvVOrsL0%3D, 9381173, 10.1126/science.278.5338.631
-
Tatusov RL, Koonin EV, Lipman DJ: A genomic perspective on protein families. Science 1997, 278:631–637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
21
-
-
0032568582
-
Measuring genome evolution
-
1:CAS:528:DyaK1cXjtlKhtbc%3D, 9600883, 10.1073/pnas.95.11.5849
-
Huynen MA, Bork P: Measuring genome evolution. Proc Natl Acad Sci USA 1998, 95:5849–5856.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5849-5856
-
-
Huynen, M.A.1
Bork, P.2
-
22
-
-
0034625111
-
Gene content phylogeny of herpesviruses
-
1:CAS:528:DC%2BD3cXjsVWnur0%3D, 10805793, 10.1073/pnas.97.10.5334
-
Montague MG, Hutchison CA 3rd: Gene content phylogeny of herpesviruses. Proc Natl Acad Sci USA 2000, 97:5334–5339.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 5334-5339
-
-
Montague, M.G.1
Hutchison, C.A.2
-
23
-
-
0033956060
-
The COG database: a tool for genome-scale analysis of protein functions and evolution
-
1:CAS:528:DC%2BD3cXhvVGqu7w%3D, 10592175, 10.1093/nar/28.1.33
-
Tatusov RL, Galperin MY, Natale DA, Koonin EV: The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res 2000, 28:33–36.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
24
-
-
0035162592
-
The COG database: new developments in phylogenetic classification of proteins from complete genomes
-
1:CAS:528:DC%2BD3MXjtlWnsLo%3D, 11125040, 10.1093/nar/29.1.22
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV: The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 2001, 29:22–28.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
25
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
12969510, 10.1186/1471-2105-4-41
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, et al.: The COG database: an updated version includes eukaryotes. BMC Bioinformatics 2003, 4:41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
-
26
-
-
0034572821
-
Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)
-
10.1186/gb-2000-1-5-research0009, research0009.1
-
Natale DA, Shankavaram UT, Galperin MY, Wolf YI, Aravind L, Koonin EV: Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs). Genome Biol 2000, 1:research0009.1–0009.19.
-
(2000)
Genome Biol
, vol.1
-
-
Natale, D.A.1
Shankavaram, U.T.2
Galperin, M.Y.3
Wolf, Y.I.4
Aravind, L.5
Koonin, E.V.6
-
27
-
-
0034902930
-
Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum
-
1:CAS:528:DC%2BD3MXlslKkt7g%3D, 11466286, 10.1128/JB.183.16.4823-4838.2001
-
Nolling J, Breton G, Omelchenko MV, Makarova KS, Zeng Q, Gibson R, Lee HM, Dubois J, Qiu D, Hitti J, et al.: Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum. J Bacteriol 2001, 183:4823–4838.
-
(2001)
J Bacteriol
, vol.183
, pp. 4823-4838
-
-
Nolling, J.1
Breton, G.2
Omelchenko, M.V.3
Makarova, K.S.4
Zeng, Q.5
Gibson, R.6
Lee, H.M.7
Dubois, J.8
Qiu, D.9
Hitti, J.10
-
28
-
-
0035950182
-
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2
-
1:CAS:528:DC%2BD3MXotFyrtL4%3D, 11677609, 10.1038/35101614
-
McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, Courtney L, Porwollik S, Ali J, Dante M, Du F, et al.: Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 2001, 413:852–856.
-
(2001)
Nature
, vol.413
, pp. 852-856
-
-
McClelland, M.1
Sanderson, K.E.2
Spieth, J.3
Clifton, S.W.4
Latreille, P.5
Courtney, L.6
Porwollik, S.7
Ali, J.8
Dante, M.9
Du, F.10
-
29
-
-
0037007150
-
The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens
-
1:CAS:528:DC%2BD38XivFSgsrw%3D, 11930014, 10.1073/pnas.032671499
-
Slesarev AI, Mezhevaya KV, Makarova KS, Polushin NN, Shcherbinina OV, Shakhova VV, Belova GI, Aravind L, Natale DA, Rogozin IB, et al.: The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens. Proc Natl Acad Sci USA 2002, 99:4644–4649.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 4644-4649
-
-
Slesarev, A.I.1
Mezhevaya, K.V.2
Makarova, K.S.3
Polushin, N.N.4
Shcherbinina, O.V.5
Shakhova, V.V.6
Belova, G.I.7
Aravind, L.8
Natale, D.A.9
Rogozin, I.B.10
-
30
-
-
0033570135
-
A phylogenetic approach to target selection for structural genomics: solution structure of YciH
-
1:CAS:528:DyaK1MXnt1GgtrY%3D, 10497266, 10.1093/nar/27.20.4018
-
Cort JR, Koonin EV, Bash PA, Kennedy MA: A phylogenetic approach to target selection for structural genomics: solution structure of YciH. Nucleic Acids Res 1999, 27:4018–4027.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4018-4027
-
-
Cort, J.R.1
Koonin, E.V.2
Bash, P.A.3
Kennedy, M.A.4
-
31
-
-
0033768266
-
Target selection for structural genomics
-
1:CAS:528:DC%2BD3cXnvVOgtL0%3D, 11104002, 10.1038/80747
-
Brenner SE: Target selection for structural genomics. Nat Struct Biol 2000,7(Suppl):967–969.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 967-969
-
-
Brenner, S.E.1
-
32
-
-
0033757601
-
Integrative database analysis in structural genomics
-
1:CAS:528:DC%2BD3cXnvVOgtL8%3D, 11104000, 10.1038/80739
-
Gerstein M: Integrative database analysis in structural genomics. Nat Struct Biol 2000,7(Suppl):960–963.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 960-963
-
-
Gerstein, M.1
-
33
-
-
0032728399
-
Searching for drug targets in microbial genomes
-
1:CAS:528:DyaK1MXotFSlsrg%3D, 10600691, 10.1016/S0958-1669(99)00035-X
-
Galperin MY, Koonin EV: Searching for drug targets in microbial genomes. Curr Opin Biotechnol 1999, 10:571–578.
-
(1999)
Curr Opin Biotechnol
, vol.10
, pp. 571-578
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
34
-
-
0035181319
-
The role of genomics in antibacterial target discovery
-
1:CAS:528:DC%2BD3MXosV2gur0%3D, 11562290
-
Buysse JM: The role of genomics in antibacterial target discovery. Curr Med Chem 2001, 8:1713–1726.
-
(2001)
Curr Med Chem
, vol.8
, pp. 1713-1726
-
-
Buysse, J.M.1
-
35
-
-
0035748444
-
Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins
-
10.1186/gb-2001-2-12-research0053, research0053.1
-
Jordan IK, Kondrashov FA, Rogozin IB, Tatusov RL, Wolf YI, Koonin EV: Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins. Genome Biol 2001, 2:research0053.1–0053.9.
-
(2001)
Genome Biol
, vol.2
-
-
Jordan, I.K.1
Kondrashov, F.A.2
Rogozin, I.B.3
Tatusov, R.L.4
Wolf, Y.I.5
Koonin, E.V.6
-
36
-
-
0034940467
-
Genes linked by fusion events are generally of the same functional category: a systematic analysis of 30 microbial genomes
-
1:CAS:528:DC%2BD3MXlt1KntLw%3D, 11438739, 10.1073/pnas.141236298
-
Yanai I, Derti A, DeLisi C: Genes linked by fusion events are generally of the same functional category: a systematic analysis of 30 microbial genomes. Proc Natl Acad Sci USA 2001, 98:7940–7945.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 7940-7945
-
-
Yanai, I.1
Derti, A.2
DeLisi, C.3
-
37
-
-
0034821951
-
Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea
-
1:CAS:528:DC%2BD3MXkt12ruro%3D, 11381026, 10.1101/gr.GR1653R
-
Lecompte O, Ripp R, Puzos-Barbe V, Duprat S, Heilig R, Dietrich J, Thierry JC, Poch O: Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea. Genome Res 2001, 11:981–993.
-
(2001)
Genome Res
, vol.11
, pp. 981-993
-
-
Lecompte, O.1
Ripp, R.2
Puzos-Barbe, V.3
Duprat, S.4
Heilig, R.5
Dietrich, J.6
Thierry, J.C.7
Poch, O.8
-
38
-
-
0036078078
-
Essential genes are more evolutionarily conserved than are nonessential genes in bacteria
-
1:CAS:528:DC%2BD38Xks12hs78%3D, 12045149
-
Jordan IK, Rogozin IB, Wolf YI, Koonin EV: Essential genes are more evolutionarily conserved than are nonessential genes in bacteria. Genome Res 2002, 12:962–968.
-
(2002)
Genome Res
, vol.12
, pp. 962-968
-
-
Jordan, I.K.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
39
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
1:CAS:528:DC%2BD3MXptVOlsro%3D, 11743721, 10.1006/jmbi.2000.5197
-
Remm M, Storm CE, Sonnhammer EL: Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol 2001, 314:1041–1052.
-
(2001)
J Mol Biol
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
40
-
-
0032242111
-
Microbial genescapes: phyletic and functional patterns of ORF distribution among prokaryotes
-
1:CAS:528:DyaK1MXhsF2mt7c%3D, 10027190
-
Gaasterland T, Ragan MA: Microbial genescapes: phyletic and functional patterns of ORF distribution among prokaryotes. Microb Comp Genomics 1998, 3:199–217.
-
(1998)
Microb Comp Genomics
, vol.3
, pp. 199-217
-
-
Gaasterland, T.1
Ragan, M.A.2
-
41
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: protein phylogenetic profiles
-
1:CAS:528:DyaK1MXjs1ymurs%3D, 10200254, 10.1073/pnas.96.8.4285
-
Pellegrini M, Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO: Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc Natl Acad Sci USA 1999, 96:4285–4288.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 4285-4288
-
-
Pellegrini, M.1
Marcotte, E.M.2
Thompson, M.J.3
Eisenberg, D.4
Yeates, T.O.5
-
42
-
-
0034084865
-
Who's your neighbor? New computational approaches for functional genomics
-
1:CAS:528:DC%2BD3cXkt12gtr8%3D, 10835597, 10.1038/76443
-
Galperin MY, Koonin EV: Who's your neighbor? New computational approaches for functional genomics. Nat Biotechnol 2000, 18:609–613.
-
(2000)
Nat Biotechnol
, vol.18
, pp. 609-613
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
43
-
-
0037025191
-
An alternative flavin-dependent mechanism for thymidylate synthesis
-
1:CAS:528:DC%2BD38XltFGqs7w%3D, 12029065, 10.1126/science.1072113
-
Myllykallio H, Lipowski G, Leduc D, Filee J, Forterre P, Liebl U: An alternative flavin-dependent mechanism for thymidylate synthesis. Science 2002, 297:105–107.
-
(2002)
Science
, vol.297
, pp. 105-107
-
-
Myllykallio, H.1
Lipowski, G.2
Leduc, D.3
Filee, J.4
Forterre, P.5
Liebl, U.6
-
44
-
-
0037458108
-
Trait-to-Gene. A computational method for predicting the function of uncharacterized genes
-
1:CAS:528:DC%2BD3sXmsFeruw%3D%3D, 12546786, 10.1016/S0960-9822(03)00009-5
-
Levesque M, Shasha D, Kim W, Surette MG, Benfey PN: Trait-to-Gene. A computational method for predicting the function of uncharacterized genes. Curr Biol 2003, 13:129–133.
-
(2003)
Curr Biol
, vol.13
, pp. 129-133
-
-
Levesque, M.1
Shasha, D.2
Kim, W.3
Surette, M.G.4
Benfey, P.N.5
-
45
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
1:CAS:528:DC%2BD3MXhsFCjtLc%3D, 11237011, 10.1038/35057062
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, et al.: Initial sequencing and analysis of the human genome. Nature 2001, 409:860–921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
-
46
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
10731132, 10.1126/science.287.5461.2185
-
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, et al.: The genome sequence of Drosophila melanogaster. Science 2000, 287:2185–2195.
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
-
47
-
-
0032509302
-
Genome sequence of the nematode C. elegans: a platform for investigating biology
-
10.1126/science.282.5396.2012
-
The C. elegans Sequencing Consortium: Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 1998, 282:2012–2018.
-
(1998)
Science
, vol.282
, pp. 2012-2018
-
-
-
48
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
10.1038/35048692
-
Arabidopsis Genome Initiative: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796–815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
49
-
-
10244239321
-
Life with 6000 genes
-
10.1126/science.274.5287.546
-
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F, Hoheisel JD, Jacq C, Johnston M, et al.: Life with 6000 genes. Science 1996, 274:563–547.
-
(1996)
Science
, vol.274
, pp. 547-563
-
-
Goffeau, A.1
Barrell, B.G.2
Bussey, H.3
Davis, R.W.4
Dujon, B.5
Feldmann, H.6
Galibert, F.7
Hoheisel, J.D.8
Jacq, C.9
Johnston, M.10
-
50
-
-
0037148758
-
The genome sequence of Schizosaccharomyces pombe
-
1:CAS:528:DC%2BD38Xhs1ygtbk%3D, 11859360, 10.1038/nature724
-
Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, Stewart A, Sgouros J, Peat N, Hayles J, Baker S, et al.: The genome sequence of Schizosaccharomyces pombe. Nature 2002, 415:871–880.
-
(2002)
Nature
, vol.415
, pp. 871-880
-
-
Wood, V.1
Gwilliam, R.2
Rajandream, M.A.3
Lyne, M.4
Lyne, R.5
Stewart, A.6
Sgouros, J.7
Peat, N.8
Hayles, J.9
Baker, S.10
-
51
-
-
0035936144
-
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
-
1:CAS:528:DC%2BD3MXovFamsbo%3D, 11719806, 10.1038/35106579
-
Katinka MD, Duprat S, Cornillot E, Metenier G, Thomarat F, Prensier G, Barbe V, Peyretaillade E, Brottier P, Wincker P, et al.: Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature 2001, 414:450–453.
-
(2001)
Nature
, vol.414
, pp. 450-453
-
-
Katinka, M.D.1
Duprat, S.2
Cornillot, E.3
Metenier, G.4
Thomarat, F.5
Prensier, G.6
Barbe, V.7
Peyretaillade, E.8
Brottier, P.9
Wincker, P.10
-
52
-
-
0036066765
-
The role of lineage-specific gene family expansion in the evolution of eukaryotes
-
1:CAS:528:DC%2BD38XlsVWgsr4%3D, 12097341, 10.1101/gr.174302
-
Lespinet O, Wolf YI, Koonin EV, Aravind L: The role of lineage-specific gene family expansion in the evolution of eukaryotes. Genome Res 2002, 12:1048–1059.
-
(2002)
Genome Res
, vol.12
, pp. 1048-1059
-
-
Lespinet, O.1
Wolf, Y.I.2
Koonin, E.V.3
Aravind, L.4
-
54
-
-
0035171077
-
HUNT: launch of a full-length cDNA database from the Helix Research Institute
-
1:CAS:528:DC%2BD3MXjtlWms7c%3D, 11125086, 10.1093/nar/29.1.185
-
Yudate HT, Suwa M, Irie R, Matsui H, Nishikawa T, Nakamura Y, Yamaguchi D, Peng ZZ, Yamamoto T, Nagai K, et al.: HUNT: launch of a full-length cDNA database from the Helix Research Institute. Nucleic Acids Res 2001, 29:185–188.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 185-188
-
-
Yudate, H.T.1
Suwa, M.2
Irie, R.3
Matsui, H.4
Nishikawa, T.5
Nakamura, Y.6
Yamaguchi, D.7
Peng, Z.Z.8
Yamamoto, T.9
Nagai, K.10
-
55
-
-
0002636459
-
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review
-
10.1186/gb-2002-3-12-research0083, research0083.1
-
Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, et al.: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biol 2002, 3:research0083.1–0083.22.
-
(2002)
Genome Biol
, vol.3
-
-
Misra, S.1
Crosby, M.A.2
Mungall, C.J.3
Matthews, B.B.4
Campbell, K.S.5
Hradecky, P.6
Huang, Y.7
Kaminker, J.S.8
Millburn, G.H.9
Prochnik, S.E.10
-
56
-
-
0038349948
-
Sequencing and comparison of yeast species to identify genes and regulatory elements
-
1:CAS:528:DC%2BD3sXjs1ynu78%3D, 12748633, 10.1038/nature01644
-
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES: Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 2003, 423:241–254.
-
(2003)
Nature
, vol.423
, pp. 241-254
-
-
Kellis, M.1
Patterson, N.2
Endrizzi, M.3
Birren, B.4
Lander, E.S.5
-
57
-
-
0034633626
-
Lineage-specific loss and divergence of functionally linked genes in eukaryotes
-
1:CAS:528:DC%2BD3cXnsF2rurg%3D, 11016957, 10.1073/pnas.200346997
-
Aravind L, Watanabe H, Lipman DJ, Koonin EV: Lineage-specific loss and divergence of functionally linked genes in eukaryotes. Proc Natl Acad Sci USA 2000, 97:11319–11324.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 11319-11324
-
-
Aravind, L.1
Watanabe, H.2
Lipman, D.J.3
Koonin, E.V.4
-
58
-
-
0032962345
-
Rickettsiae and Chlamydiae: evidence of horizontal gene transfer and gene exchange
-
1:CAS:528:DyaK1MXjt12mtbY%3D, 10322483, 10.1016/S0168-9525(99)01704-7
-
Wolf YI, Aravind L, Koonin EV: Rickettsiae and Chlamydiae: evidence of horizontal gene transfer and gene exchange. Trends Genet 1999, 15:173–175.
-
(1999)
Trends Genet
, vol.15
, pp. 173-175
-
-
Wolf, Y.I.1
Aravind, L.2
Koonin, E.V.3
-
59
-
-
0033523854
-
A combined algorithm for genome-wide prediction of protein function
-
1:CAS:528:DyaK1MXntlCms78%3D, 10573421, 10.1038/47048
-
Marcotte EM, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D: A combined algorithm for genome-wide prediction of protein function. Nature 1999, 402:83–86.
-
(1999)
Nature
, vol.402
, pp. 83-86
-
-
Marcotte, E.M.1
Pellegrini, M.2
Thompson, M.J.3
Yeates, T.O.4
Eisenberg, D.5
-
60
-
-
0033940941
-
Gene and context: integrative approaches to genome analysis
-
1:CAS:528:DC%2BD3cXltFSqs7o%3D, 10829232, 10.1016/S0065-3233(00)54010-8
-
Huynen MJ, Snel B: Gene and context: integrative approaches to genome analysis. Adv Protein Chem 2000, 54:345–379.
-
(2000)
Adv Protein Chem
, vol.54
, pp. 345-379
-
-
Huynen, M.J.1
Snel, B.2
-
61
-
-
0033828623
-
Guilt by association: contextual information in genome analysis
-
1:CAS:528:DC%2BD3cXmtFelsr4%3D, 10958625, 10.1101/gr.10.8.1074
-
Aravind L: Guilt by association: contextual information in genome analysis. Genome Res 2000, 10:1074–1077.
-
(2000)
Genome Res
, vol.10
, pp. 1074-1077
-
-
Aravind, L.1
-
62
-
-
0034595214
-
Rcl1p, the yeast protein similar to the RNA 3'-phosphate cyclase, associates with U3 snoRNP and is required for 18S rRNA biogenesis
-
1:CAS:528:DC%2BD3cXktFWiu7Y%3D, 10790377, 10.1093/emboj/19.9.2115
-
Billy E, Wegierski T, Nasr F, Filipowicz W: Rcl1p, the yeast protein similar to the RNA 3'-phosphate cyclase, associates with U3 snoRNP and is required for 18S rRNA biogenesis. EMBO J 2000, 19:2115–2126.
-
(2000)
EMBO J
, vol.19
, pp. 2115-2126
-
-
Billy, E.1
Wegierski, T.2
Nasr, F.3
Filipowicz, W.4
-
63
-
-
0041718387
-
Birth and death of protein domains: A simple model of evolution explains power law behavior
-
12379152, 10.1186/1471-2148-2-18
-
Karev GP, Wolf YI, Rzhetsky AY, Berezovskaya FS, Koonin EV: Birth and death of protein domains: A simple model of evolution explains power law behavior. BMC Evol Biol 2002, 2:18.
-
(2002)
BMC Evol Biol
, vol.2
, pp. 18
-
-
Karev, G.P.1
Wolf, Y.I.2
Rzhetsky, A.Y.3
Berezovskaya, F.S.4
Koonin, E.V.5
-
64
-
-
0038157152
-
Dosage sensitivity and the evolution of gene families in yeast
-
1:CAS:528:DC%2BD3sXlt1CktLg%3D, 12853957, 10.1038/nature01771
-
Papp B, Pal C, Hurst LD: Dosage sensitivity and the evolution of gene families in yeast. Nature 2003, 424:194–197.
-
(2003)
Nature
, vol.424
, pp. 194-197
-
-
Papp, B.1
Pal, C.2
Hurst, L.D.3
-
65
-
-
0029062216
-
The chaperonin containing t-complex polypeptide 1 (TCP-1). Multisubunit machinery assisting in protein folding and assembly in the eukaryotic cytosol
-
1:CAS:528:DyaK2MXlvFalsLc%3D, 7601114, 10.1111/j.1432-1033.1995.tb20527.x
-
Kubota H, Hynes G, Willison K: The chaperonin containing t-complex polypeptide 1 (TCP-1). Multisubunit machinery assisting in protein folding and assembly in the eukaryotic cytosol. Eur J Biochem 1995, 230:3–16.
-
(1995)
Eur J Biochem
, vol.230
, pp. 3-16
-
-
Kubota, H.1
Hynes, G.2
Willison, K.3
-
66
-
-
0033638091
-
The TRAPP complex is a nucleotide exchanger for Ypt1 and Ypt31/32
-
1:CAS:528:DC%2BD3cXovFantro%3D, 11102533
-
Jones S, Newman C, Liu F, Segev N: The TRAPP complex is a nucleotide exchanger for Ypt1 and Ypt31/32. Mol Biol Cell 2000, 11:4403–4411.
-
(2000)
Mol Biol Cell
, vol.11
, pp. 4403-4411
-
-
Jones, S.1
Newman, C.2
Liu, F.3
Segev, N.4
-
67
-
-
0036081347
-
MIPS: a database for genomes and protein sequences
-
1:CAS:528:DC%2BD38Xht12ksbg%3D, 11752246, 10.1093/nar/30.1.31
-
Mewes HW, Frishman D, Guldener U, Mannhaupt G, Mayer K, Mokrejs M, Morgenstern B, Munsterkotter M, Rudd S, Weil B: MIPS: a database for genomes and protein sequences. Nucleic Acids Res 2002, 30:31–34.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 31-34
-
-
Mewes, H.W.1
Frishman, D.2
Guldener, U.3
Mannhaupt, G.4
Mayer, K.5
Mokrejs, M.6
Morgenstern, B.7
Munsterkotter, M.8
Rudd, S.9
Weil, B.10
-
68
-
-
0033057517
-
Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer
-
1:CAS:528:DyaK1MXjslKht7g%3D, 10369758, 10.1006/jmbi.1999.2827
-
Ponting CP, Aravind L, Schultz J, Bork P, Koonin EV: Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer. J Mol Biol 1999, 289:729–745.
-
(1999)
J Mol Biol
, vol.289
, pp. 729-745
-
-
Ponting, C.P.1
Aravind, L.2
Schultz, J.3
Bork, P.4
Koonin, E.V.5
-
69
-
-
0035444250
-
ERB1, the yeast homolog of mammalian Bop1, is an essential gene required for maturation of the 25S and 5.8S ribosomal RNAs
-
1:CAS:528:DC%2BD3MXotlWnsrc%3D, 11522832, 10.1093/nar/29.17.3621
-
Pestov DG, Stockelman MG, Strezoska Z, Lau LF: ERB1, the yeast homolog of mammalian Bop1, is an essential gene required for maturation of the 25S and 5.8S ribosomal RNAs. Nucleic Acids Res 2001, 29:3621–3630.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3621-3630
-
-
Pestov, D.G.1
Stockelman, M.G.2
Strezoska, Z.3
Lau, L.F.4
-
70
-
-
0037182878
-
A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis
-
1:CAS:528:DC%2BD38XkvVagsLg%3D, 12068309, 10.1038/nature00769
-
Dragon F, Gallagher JE, Compagnone-Post PA, Mitchell BM, Porwancher KA, Wehner KA, Wormsley S, Settlage RE, Shabanowitz J, Osheim Y, et al.: A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 2002, 417:967–970.
-
(2002)
Nature
, vol.417
, pp. 967-970
-
-
Dragon, F.1
Gallagher, J.E.2
Compagnone-Post, P.A.3
Mitchell, B.M.4
Porwancher, K.A.5
Wehner, K.A.6
Wormsley, S.7
Settlage, R.E.8
Shabanowitz, J.9
Osheim, Y.10
-
71
-
-
0033858110
-
From complete genomes to measures of substitution rate variability within and between proteins
-
1:CAS:528:DC%2BD3cXltFGjsbs%3D, 10899148, 10.1101/gr.10.7.991
-
Grishin NV, Wolf YI, Koonin EV: From complete genomes to measures of substitution rate variability within and between proteins. Genome Res 2000, 10:991–1000.
-
(2000)
Genome Res
, vol.10
, pp. 991-1000
-
-
Grishin, N.V.1
Wolf, Y.I.2
Koonin, E.V.3
-
72
-
-
0036846746
-
The origin and evolution of model organisms
-
1:CAS:528:DC%2BD38Xotlersbo%3D, 12415314, 10.1038/nrg929
-
Hedges SB: The origin and evolution of model organisms. Nat Rev Genet 2002, 3:838–849.
-
(2002)
Nat Rev Genet
, vol.3
, pp. 838-849
-
-
Hedges, S.B.1
-
73
-
-
0344952061
-
The evolutionary position of nematodes
-
11985779, 10.1186/1471-2148-2-7
-
Blair JE, Ikeo K, Gojobori T, Hedges SB: The evolutionary position of nematodes. BMC Evol Biol 2002, 2:7.
-
(2002)
BMC Evol Biol
, vol.2
, pp. 7
-
-
Blair, J.E.1
Ikeo, K.2
Gojobori, T.3
Hedges, S.B.4
-
74
-
-
0345874732
-
Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis
-
1:CAS:528:DC%2BD2cXlvVGntQ%3D%3D, 14707168, 10.1101/gr.1347404
-
Wolf YI, Rogozin IB, Koonin EV: Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis. Genome Res 2004, 14:29–36.
-
(2004)
Genome Res
, vol.14
, pp. 29-36
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Koonin, E.V.3
-
75
-
-
0031010579
-
Evidence for a clade of nematodes, arthropods and other moulting animals
-
1:CAS:528:DyaK2sXjsF2htbk%3D, 9168109, 10.1038/387489a0
-
Aguinaldo AM, Turbeville JM, Linford LS, Rivera MC, Garey JR, Raff RA, Lake JA: Evidence for a clade of nematodes, arthropods and other moulting animals. Nature 1997, 387:489–493.
-
(1997)
Nature
, vol.387
, pp. 489-493
-
-
Aguinaldo, A.M.1
Turbeville, J.M.2
Linford, L.S.3
Rivera, M.C.4
Garey, J.R.5
Raff, R.A.6
Lake, J.A.7
-
76
-
-
0033600273
-
Hox genes in brachiopods and priapulids and protostome evolution
-
1:STN:280:DyaK1MzhvVWhtw%3D%3D, 10391241, 10.1038/21631
-
de Rosa R, Grenier JK, Andreeva T, Cook CE, Adoutte A, Akam M, Carroll SB, Balavoine G: Hox genes in brachiopods and priapulids and protostome evolution. Nature 1999, 399:772–776.
-
(1999)
Nature
, vol.399
, pp. 772-776
-
-
de Rosa, R.1
Grenier, J.K.2
Andreeva, T.3
Cook, C.E.4
Adoutte, A.5
Akam, M.6
Carroll, S.B.7
Balavoine, G.8
-
77
-
-
0036184428
-
Testing the new animal phylogeny: first use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes
-
1:CAS:528:DC%2BD38XitFSnsL0%3D, 11861888
-
Mallatt J, Winchell CJ: Testing the new animal phylogeny: first use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes. Mol Biol Evol 2002, 19:289–301.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 289-301
-
-
Mallatt, J.1
Winchell, C.J.2
-
78
-
-
0034945410
-
Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences
-
1:CAS:528:DC%2BD38XisVWms7Y%3D, 11440251, 10.1046/j.1525-142x.2001.003003170.x
-
Peterson KJ, Eernisse DJ: Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences. Evol Dev 2001, 3:170–205.
-
(2001)
Evol Dev
, vol.3
, pp. 170-205
-
-
Peterson, K.J.1
Eernisse, D.J.2
-
79
-
-
84959795073
-
Phylogenetic analysis under Dollo's Law
-
10.2307/2412867
-
Farris JS: Phylogenetic analysis under Dollo's Law. Syst Zool 1977, 26:77–88.
-
(1977)
Syst Zool
, vol.26
, pp. 77-88
-
-
Farris, J.S.1
-
80
-
-
0036382768
-
Modeling a minimal ribosome based on comparative sequence analysis
-
1:CAS:528:DC%2BD38Xmt1GntbY%3D, 12144780, 10.1016/S0022-2836(02)00568-5
-
Mears JA, Cannone JJ, Stagg SM, Gutell RR, Agrawal RK, Harvey SC: Modeling a minimal ribosome based on comparative sequence analysis. J Mol Biol 2002, 321:215–234.
-
(2002)
J Mol Biol
, vol.321
, pp. 215-234
-
-
Mears, J.A.1
Cannone, J.J.2
Stagg, S.M.3
Gutell, R.R.4
Agrawal, R.K.5
Harvey, S.C.6
-
81
-
-
0037252683
-
CDD: a curated Entrez database of conserved domain alignments
-
1:CAS:528:DC%2BD3sXhvFSmtbo%3D, 12520028, 10.1093/nar/gkg087
-
Marchler-Bauer A, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, et al.: CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res 2003, 31:383–387.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 383-387
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
DeWeese-Scott, C.3
Fedorova, N.D.4
Geer, L.Y.5
He, S.6
Hurwitz, D.I.7
Jackson, J.D.8
Jacobs, A.R.9
Lanczycki, C.J.10
-
82
-
-
0031470387
-
Archaea and the prokaryote-to-eukaryote transition
-
1:CAS:528:DyaK2sXotVymsbk%3D, 9409149
-
Brown JR, Doolittle WF: Archaea and the prokaryote-to-eukaryote transition. Microbiol Mol Biol Rev 1997, 61:456–502.
-
(1997)
Microbiol Mol Biol Rev
, vol.61
, pp. 456-502
-
-
Brown, J.R.1
Doolittle, W.F.2
-
83
-
-
0017323923
-
Biochemical evolution
-
1:CAS:528:DyaE2sXltFehsrY%3D, 409339, 10.1146/annurev.bi.46.070177.003041
-
Wilson AC, Carlson SS, White TJ: Biochemical evolution. Annu Rev Biochem 1977, 46:573–639.
-
(1977)
Annu Rev Biochem
, vol.46
, pp. 573-639
-
-
Wilson, A.C.1
Carlson, S.S.2
White, T.J.3
-
84
-
-
0035963414
-
Protein dispensability and rate of evolution
-
1:CAS:528:DC%2BD3MXltVCrsrs%3D, 11429604, 10.1038/35082561
-
Hirsh AE, Fraser HB: Protein dispensability and rate of evolution. Nature 2001, 411:1046–1049.
-
(2001)
Nature
, vol.411
, pp. 1046-1049
-
-
Hirsh, A.E.1
Fraser, H.B.2
-
85
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
1:CAS:528:DC%2BD38XlsFajt7k%3D, 12140549, 10.1038/nature00935
-
Giaever G, Chu AM, Ni L, Connelly C, Riles L, Veronneau S, Dow S, Lucau-Danila A, Anderson K, Andre B, et al.: Functional profiling of the Saccharomyces cerevisiae genome. Nature 2002, 418:387–391.
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
Veronneau, S.6
Dow, S.7
Lucau-Danila, A.8
Anderson, K.9
Andre, B.10
-
86
-
-
0037448540
-
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
-
1:CAS:528:DC%2BD3sXjsF2htg%3D%3D, 12529635, 10.1038/nature01278
-
Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, Gotta M, Kanapin A, Le Bot N, Moreno S, Sohrmann M, et al.: Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 2003, 421:231–237.
-
(2003)
Nature
, vol.421
, pp. 231-237
-
-
Kamath, R.S.1
Fraser, A.G.2
Dong, Y.3
Poulin, G.4
Durbin, R.5
Gotta, M.6
Kanapin, A.7
Le Bot, N.8
Moreno, S.9
Sohrmann, M.10
-
87
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
1:CAS:528:DC%2BD38Xpt1WhsLw%3D, 12466850, 10.1038/nature01262
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, et al.: Initial sequencing and comparative analysis of the mouse genome. Nature 2002, 420:520–562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
-
88
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
-
1:CAS:528:DC%2BD38Xms1ejtr8%3D, 12142439, 10.1126/science.1072104
-
Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S, Smit A, et al.: Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 2002, 297:1301–1310.
-
(2002)
Science
, vol.297
, pp. 1301-1310
-
-
Aparicio, S.1
Chapman, J.2
Stupka, E.3
Putnam, N.4
Chia, J.M.5
Dehal, P.6
Christoffels, A.7
Rash, S.8
Hoon, S.9
Smit, A.10
-
89
-
-
0037020114
-
The genome sequence of the malaria mosquito Anopheles gambiae
-
1:CAS:528:DC%2BD38XnsFSgsr8%3D, 12364791, 10.1126/science.1076181
-
Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, et al.: The genome sequence of the malaria mosquito Anopheles gambiae. Science 2002, 298:129–149.
-
(2002)
Science
, vol.298
, pp. 129-149
-
-
Holt, R.A.1
Subramanian, G.M.2
Halpern, A.3
Sutton, G.G.4
Charlab, R.5
Nusskern, D.R.6
Wincker, P.7
Clark, A.G.8
Ribeiro, J.M.9
-
90
-
-
2242464840
-
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins
-
1:CAS:528:DC%2BD38XpsVSkt7o%3D, 12481130, 10.1126/science.1080049
-
Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, et al.: The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 2002, 298:2157–2167.
-
(2002)
Science
, vol.298
, pp. 2157-2167
-
-
Dehal, P.1
Satou, Y.2
Campbell, R.K.3
Chapman, J.4
Degnan, B.5
De Tomaso, A.6
Davidson, B.7
Di Gregorio, A.8
Gelpke, M.9
Goodstein, D.M.10
-
91
-
-
0037015614
-
Genome sequence of the human malaria parasite Plasmodium falciparum
-
1:CAS:528:DC%2BD38XnsFais7Y%3D, 12368864, 10.1038/nature01097
-
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, et al.: Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 2002, 419:498–511.
-
(2002)
Nature
, vol.419
, pp. 498-511
-
-
Gardner, M.J.1
Hall, N.2
Fung, E.3
White, O.4
Berriman, M.5
Hyman, R.W.6
Carlton, J.M.7
Pain, A.8
Nelson, K.E.9
Bowman, S.10
-
92
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
1:CAS:528:DyaK2sXlvFyhu7w%3D, 9254694, 10.1093/nar/25.17.3389
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389–3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
93
-
-
0029901640
-
Analysis of compositionally biased regions in sequence databases
-
1:CAS:528:DyaK28Xltl2ntbw%3D, 8743706, 10.1016/S0076-6879(96)66035-2
-
Wootton JC, Federhen S: Analysis of compositionally biased regions in sequence databases. Methods Enzymol 1996, 266:554–571.
-
(1996)
Methods Enzymol
, vol.266
, pp. 554-571
-
-
Wootton, J.C.1
Federhen, S.2
-
95
-
-
0032568655
-
SMART, a simple modular architecture research tool: identification of signaling domains
-
1:CAS:528:DyaK1cXjtlKhur8%3D, 9600884, 10.1073/pnas.95.11.5857
-
Schultz J, Milpetz F, Bork P, Ponting CP: SMART, a simple modular architecture research tool: identification of signaling domains. Proc Natl Acad Sci USA 1998, 95:5857–5864.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5857-5864
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
96
-
-
0028304908
-
On global sequence alignment
-
1:CAS:528:DyaK2MXkvVeqtQ%3D%3D, 7922677
-
Huang X: On global sequence alignment. Comput Appl Biosci 1994, 10:227–235.
-
(1994)
Comput Appl Biosci
, vol.10
, pp. 227-235
-
-
Huang, X.1
-
97
-
-
0029901637
-
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
-
1:CAS:528:DyaK28Xltl2nt7g%3D, 8743697, 10.1016/S0076-6879(96)66026-1
-
Felsenstein J: Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods Enzymol 1996, 266:418–427.
-
(1996)
Methods Enzymol
, vol.266
, pp. 418-427
-
-
Felsenstein, J.1
-
99
-
-
85182680229
-
-
The Eukaryotic Clusters of Orthologous Groups of proteins (KOGs): download
-
The Eukaryotic Clusters of Orthologous Groups of proteins (KOGs): download[ftp://ftp.ncbi.nih.gov/pub/COG/KOG]
-
-
-
-
100
-
-
85182648137
-
-
Reconstructed KOG sets for eukaryotic ancestral forms
-
Reconstructed KOG sets for eukaryotic ancestral forms[ftp://ftp.ncbi.nih.gov/pub/koonin/Ancestors/]
-
-
-
-
101
-
-
0032574733
-
The BRC repeats in BRCA2 are critical for RAD51 binding and resistance to methyl methanesulfonate treatment
-
1:CAS:528:DyaK1cXivV2jtL4%3D, 9560268, 10.1073/pnas.95.9.5287
-
Chen PL, Chen CF, Chen Y, Xiao J, Sharp ZD, Lee WH: The BRC repeats in BRCA2 are critical for RAD51 binding and resistance to methyl methanesulfonate treatment. Proc Natl Acad Sci USA 1998, 95:5287–5292.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5287-5292
-
-
Chen, P.L.1
Chen, C.F.2
Chen, Y.3
Xiao, J.4
Sharp, Z.D.5
Lee, W.H.6
-
102
-
-
0036752956
-
BRCA2 homolog required for proficiency in DNA repair, recombination, and genome stability in Ustilago maydis
-
1:CAS:528:DC%2BD38XnvFSltLY%3D, 12408834, 10.1016/S1097-2765(02)00632-9
-
Kojic M, Kostrub CF, Buchman AR, Holloman WK: BRCA2 homolog required for proficiency in DNA repair, recombination, and genome stability in Ustilago maydis. Mol Cell 2002, 10:683–691.
-
(2002)
Mol Cell
, vol.10
, pp. 683-691
-
-
Kojic, M.1
Kostrub, C.F.2
Buchman, A.R.3
Holloman, W.K.4
-
103
-
-
0032566718
-
Characterization of the Escherichia coli RNA 3'-terminal phosphate cyclase and its sigma54-regulated operon
-
1:CAS:528:DyaK1cXmsVGls7w%3D, 9738023, 10.1074/jbc.273.39.25516
-
Genschik P, Drabikowski K, Filipowicz W: Characterization of the Escherichia coli RNA 3'-terminal phosphate cyclase and its sigma54-regulated operon. J Biol Chem 1998, 273:25516–25526.
-
(1998)
J Biol Chem
, vol.273
, pp. 25516-25526
-
-
Genschik, P.1
Drabikowski, K.2
Filipowicz, W.3
-
104
-
-
0037022595
-
Mot1 activates and represses transcription by direct, ATPase-dependent mechanisms
-
1:CAS:528:DC%2BD38Xit1Crsbs%3D, 11880621, 10.1073/pnas.052397899
-
Dasgupta A, Darst RP, Martin KJ, Afshari CA, Auble DT: Mot1 activates and represses transcription by direct, ATPase-dependent mechanisms. Proc Natl Acad Sci USA 2002, 99:2666–2671.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 2666-2671
-
-
Dasgupta, A.1
Darst, R.P.2
Martin, K.J.3
Afshari, C.A.4
Auble, D.T.5
-
105
-
-
0031722706
-
Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily
-
1:CAS:528:DyaK1cXnsVKjsLk%3D, 9799791
-
Leonard CJ, Aravind L, Koonin EV: Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily. Genome Res 1998, 8:1038–1047.
-
(1998)
Genome Res
, vol.8
, pp. 1038-1047
-
-
Leonard, C.J.1
Aravind, L.2
Koonin, E.V.3
-
106
-
-
0037373221
-
Late cytoplasmic maturation of the small ribosomal subunit requires RIO proteins in Saccharomyces cerevisiae
-
1:CAS:528:DC%2BD3sXhvF2isbs%3D, 12612080, 10.1128/MCB.23.6.2083-2095.2003
-
Vanrobays E, Gelugne JP, Gleizes PE, Caizergues-Ferrer M: Late cytoplasmic maturation of the small ribosomal subunit requires RIO proteins in Saccharomyces cerevisiae. Mol Cell Biol 2003, 23:2083–2095.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 2083-2095
-
-
Vanrobays, E.1
Gelugne, J.P.2
Gleizes, P.E.3
Caizergues-Ferrer, M.4
-
107
-
-
0034676448
-
Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III
-
1:CAS:528:DC%2BD3cXosVelur8%3D, 11099034, 10.1038/35042526
-
Gonczy P, Echeverri C, Oegema K, Coulson A, Jones SJ, Copley RR, Duperon J, Oegema J, Brehm M, Cassin E, et al.: Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III. Nature 2000, 408:331–336.
-
(2000)
Nature
, vol.408
, pp. 331-336
-
-
Gonczy, P.1
Echeverri, C.2
Oegema, K.3
Coulson, A.4
Jones, S.J.5
Copley, R.R.6
Duperon, J.7
Oegema, J.8
Brehm, M.9
Cassin, E.10
-
108
-
-
0032808151
-
Imp3p and Imp4p, two specific components of the U3 small nucleolar ribonucleoprotein that are essential for pre-18S rRNA processing
-
1:CAS:528:DyaK1MXkvVKjs7Y%3D, 10409734
-
Lee SJ, Baserga SJ: Imp3p and Imp4p, two specific components of the U3 small nucleolar ribonucleoprotein that are essential for pre-18S rRNA processing. Mol Cell Biol 1999, 19:5441–5452.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 5441-5452
-
-
Lee, S.J.1
Baserga, S.J.2
-
109
-
-
0034745504
-
Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
-
1:CAS:528:DC%2BD3MXht1GqtLs%3D, 11157787, 10.1101/gr.162001
-
Koonin EV, Wolf YI, Aravind L: Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach. Genome Res 2001, 11:240–252.
-
(2001)
Genome Res
, vol.11
, pp. 240-252
-
-
Koonin, E.V.1
Wolf, Y.I.2
Aravind, L.3
-
110
-
-
0034043398
-
Rrp8p is a yeast nucleolar protein functionally linked to Gar1p and involved in pre-rRNA cleavage at site A2
-
1:CAS:528:DC%2BD3cXkt1aqtLk%3D, 10864042, 10.1017/S1355838200992288
-
Bousquet-Antonelli C, Vanrobays E, Gelugne JP, Caizergues-Ferrer M, Henry Y: Rrp8p is a yeast nucleolar protein functionally linked to Gar1p and involved in pre-rRNA cleavage at site A2. RNA 2000, 6:826–843.
-
(2000)
RNA
, vol.6
, pp. 826-843
-
-
Bousquet-Antonelli, C.1
Vanrobays, E.2
Gelugne, J.P.3
Caizergues-Ferrer, M.4
Henry, Y.5
-
111
-
-
0028945414
-
Yeast virus propagation depends critically on free 60S ribosomal subunit concentration
-
1:CAS:528:DyaK2MXltFagtb8%3D, 7739558
-
Ohtake Y, Wickner RB: Yeast virus propagation depends critically on free 60S ribosomal subunit concentration. Mol Cell Biol 1995, 15:2772–2781.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 2772-2781
-
-
Ohtake, Y.1
Wickner, R.B.2
-
112
-
-
0018714987
-
Mak mutants of yeast: mapping and characterization
-
1:CAS:528:DyaL3cXjtVCl, 387719
-
Wickner RB, Leibowitz MJ: Mak mutants of yeast: mapping and characterization. J Bacteriol 1979, 140:154–160.
-
(1979)
J Bacteriol
, vol.140
, pp. 154-160
-
-
Wickner, R.B.1
Leibowitz, M.J.2
-
113
-
-
0032766490
-
Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell
-
1:CAS:528:DyaK1MXkvV2itbg%3D, 10413400
-
Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV: Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. Genome Res 1999, 9:608–628.
-
(1999)
Genome Res
, vol.9
, pp. 608-628
-
-
Makarova, K.S.1
Aravind, L.2
Galperin, M.Y.3
Grishin, N.V.4
Tatusov, R.L.5
Wolf, Y.I.6
Koonin, E.V.7
-
114
-
-
0034649546
-
PIN domains in nonsense-mediated mRNA decay and RNAi
-
1:CAS:528:DC%2BD3cXovFKgtLs%3D, 11137022, 10.1016/S0960-9822(00)00858-7
-
Clissold PM, Ponting CP: PIN domains in nonsense-mediated mRNA decay and RNAi. Curr Biol 2000, 10:R888-R890.
-
(2000)
Curr Biol
, vol.10
, pp. R888-R890
-
-
Clissold, P.M.1
Ponting, C.P.2
-
115
-
-
0037115555
-
Nob1p is required for biogenesis of the 26S proteasome and degraded upon its maturation in Saccharomyces cerevisiae
-
1:CAS:528:DC%2BD3sXhvVGruw%3D%3D, 12502737, 10.1101/gad.1025602
-
Tone Y, Toh EA: Nob1p is required for biogenesis of the 26S proteasome and degraded upon its maturation in Saccharomyces cerevisiae. Genes Dev 2002, 16:3142–3157.
-
(2002)
Genes Dev
, vol.16
, pp. 3142-3157
-
-
Tone, Y.1
Toh, E.A.2
-
116
-
-
0037369912
-
Nob1p is required for cleavage of the 3' end of 18S rRNA
-
1:CAS:528:DC%2BD3sXhs1SgsL4%3D, 12588997, 10.1128/MCB.23.5.1798-1807.2003
-
Fatica A, Oeffinger M, Dlakic M, Tollervey D: Nob1p is required for cleavage of the 3' end of 18S rRNA. Mol Cell Biol 2003, 23:1798–1807.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 1798-1807
-
-
Fatica, A.1
Oeffinger, M.2
Dlakic, M.3
Tollervey, D.4
-
117
-
-
0042475409
-
Characterization of mutations that are synthetic lethal with pol3-13, a mutated allele of DNA polymerase delta in Saccharomyces cerevisiae
-
1:CAS:528:DC%2BD3sXltFCntLw%3D, 12759774, 10.1007/s00294-003-0407-2
-
Chanet R, Heude M: Characterization of mutations that are synthetic lethal with pol3–13, a mutated allele of DNA polymerase delta in Saccharomyces cerevisiae. Curr Genet 2003, 43:337–350.
-
(2003)
Curr Genet
, vol.43
, pp. 337-350
-
-
Chanet, R.1
Heude, M.2
-
118
-
-
0034763857
-
Ria1p (Ynl163c), a protein similar to elongation factors 2, is involved in the biogenesis of the 60S subunit of the ribosome in Saccharomyces cerevisiae
-
1:CAS:528:DC%2BD3MXpt1Ggsrs%3D, 11713675, 10.1007/s004380100548
-
Becam AM, Nasr F, Racki WJ, Zagulski M, Herbert CJ: Ria1p (Ynl163c), a protein similar to elongation factors 2, is involved in the biogenesis of the 60S subunit of the ribosome in Saccharomyces cerevisiae. Mol Genet Genomics 2001, 266:454–462.
-
(2001)
Mol Genet Genomics
, vol.266
, pp. 454-462
-
-
Becam, A.M.1
Nasr, F.2
Racki, W.J.3
Zagulski, M.4
Herbert, C.J.5
-
119
-
-
0036796740
-
Distribution and evolution of von Willebrand/integrin A domains: widely dispersed domains with roles in cell adhesion and elsewhere
-
1:CAS:528:DC%2BD38XotFyrsr8%3D, 12388743, 10.1091/mbc.E02-05-0259
-
Whittaker CA, Hynes RO: Distribution and evolution of von Willebrand/integrin A domains: widely dispersed domains with roles in cell adhesion and elsewhere. Mol Biol Cell 2002, 13:3369–3387.
-
(2002)
Mol Biol Cell
, vol.13
, pp. 3369-3387
-
-
Whittaker, C.A.1
Hynes, R.O.2
-
120
-
-
0033786937
-
Mediator of transcriptional regulation
-
1:CAS:528:DC%2BD3cXnt1ajuro%3D, 10966474, 10.1146/annurev.biochem.69.1.729
-
Myers LC, Kornberg RD: Mediator of transcriptional regulation. Annu Rev Biochem 2000, 69:729–749.
-
(2000)
Annu Rev Biochem
, vol.69
, pp. 729-749
-
-
Myers, L.C.1
Kornberg, R.D.2
-
121
-
-
0033010438
-
A novel human SRB/MED-containing cofactor complex, SMCC, involved in transcription regulation
-
1:CAS:528:DyaK1MXpvFWktg%3D%3D, 10024883, 10.1016/S1097-2765(00)80178-1
-
Gu W, Malik S, Ito M, Yuan CX, Fondell JD, Zhang X, Martinez E, Qin J, Roeder RG: A novel human SRB/MED-containing cofactor complex, SMCC, involved in transcription regulation. Mol Cell 1999, 3:97–108.
-
(1999)
Mol Cell
, vol.3
, pp. 97-108
-
-
Gu, W.1
Malik, S.2
Ito, M.3
Yuan, C.X.4
Fondell, J.D.5
Zhang, X.6
Martinez, E.7
Qin, J.8
Roeder, R.G.9
-
122
-
-
0036295212
-
Classification and evolution of P-loop GTPases and related ATPases
-
1:CAS:528:DC%2BD38XitlWitrw%3D, 11916378, 10.1006/jmbi.2001.5378
-
Leipe DD, Wolf YI, Koonin EV, Aravind L: Classification and evolution of P-loop GTPases and related ATPases. J Mol Biol 2002, 317:41–72.
-
(2002)
J Mol Biol
, vol.317
, pp. 41-72
-
-
Leipe, D.D.1
Wolf, Y.I.2
Koonin, E.V.3
Aravind, L.4
-
123
-
-
0032529457
-
Phosphoesterase domains associated with DNA polymerases of diverse origins
-
1:CAS:528:DyaK1cXls1SmtLk%3D, 9685491, 10.1093/nar/26.16.3746
-
Aravind L, Koonin EV: Phosphoesterase domains associated with DNA polymerases of diverse origins. Nucleic Acids Res 1998, 26:3746–3752.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 3746-3752
-
-
Aravind, L.1
Koonin, E.V.2
-
124
-
-
0033574503
-
Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database
-
1:CAS:528:DyaK1MXis1Kktrs%3D, 10222208, 10.1006/jmbi.1999.2653
-
Aravind L, Koonin EV: Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database. J Mol Biol 1999, 287:1023–1040.
-
(1999)
J Mol Biol
, vol.287
, pp. 1023-1040
-
-
Aravind, L.1
Koonin, E.V.2
-
125
-
-
0035085816
-
Genome alignment, evolution of prokaryotic genome organization and prediction of gene function using genomic context
-
1:CAS:528:DC%2BD3MXhvVOnsbg%3D, 11230160, 10.1101/gr.GR-1619R
-
Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV: Genome alignment, evolution of prokaryotic genome organization and prediction of gene function using genomic context. Genome Res 2001, 11:356–372.
-
(2001)
Genome Res
, vol.11
, pp. 356-372
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Kondrashov, A.S.3
Koonin, E.V.4
-
126
-
-
0035796402
-
Vps45p stabilizes the syntaxin homologue Tlg2p and positively regulates SNARE complex formation
-
1:CAS:528:DC%2BD3MXlsVCgtrs%3D, 11432826, 10.1093/emboj/20.13.3380
-
Bryant NJ, James DE: Vps45p stabilizes the syntaxin homologue Tlg2p and positively regulates SNARE complex formation. EMBO J 2001, 20:3380–3388.
-
(2001)
EMBO J
, vol.20
, pp. 3380-3388
-
-
Bryant, N.J.1
James, D.E.2
-
127
-
-
0036529621
-
Comparative genomics and evolution of proteins involved in RNA metabolism
-
1:CAS:528:DC%2BD38XjtFOkur8%3D, 11917006, 10.1093/nar/30.7.1427
-
Anantharaman V, Koonin EV, Aravind L: Comparative genomics and evolution of proteins involved in RNA metabolism. Nucleic Acids Res 2002, 30:1427–1464.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1427-1464
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
128
-
-
0033575262
-
Ribonuclease activity of rat liver perchloric acid-soluble protein, a potent inhibitor of protein synthesis
-
1:CAS:528:DyaK1MXks1Ojtbs%3D, 10400702, 10.1074/jbc.274.29.20688
-
Morishita R, Kawagoshi A, Sawasaki T, Madin K, Ogasawara T, Oka T, Endo Y: Ribonuclease activity of rat liver perchloric acid-soluble protein, a potent inhibitor of protein synthesis. J Biol Chem 1999, 274:20688–20692.
-
(1999)
J Biol Chem
, vol.274
, pp. 20688-20692
-
-
Morishita, R.1
Kawagoshi, A.2
Sawasaki, T.3
Madin, K.4
Ogasawara, T.5
Oka, T.6
Endo, Y.7
-
129
-
-
0033046425
-
Novel predicted RNA-binding domains associated with the translation machinery
-
1:CAS:528:DyaK1MXhs1ymtbw%3D, 10093218, 10.1007/PL00006472
-
Aravind L, Koonin EV: Novel predicted RNA-binding domains associated with the translation machinery. J Mol Evol 1999, 48:291–302.
-
(1999)
J Mol Evol
, vol.48
, pp. 291-302
-
-
Aravind, L.1
Koonin, E.V.2
-
130
-
-
0029910711
-
Cleavage of RNA hairpins mediated by a developmentally regulated CCCH zinc finger protein
-
1:STN:280:DyaK2s%2FpvVKnsQ%3D%3D, 8943320
-
Bai C, Tolias PP: Cleavage of RNA hairpins mediated by a developmentally regulated CCCH zinc finger protein. Mol Cell Biol 1996, 16:6661–6667.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 6661-6667
-
-
Bai, C.1
Tolias, P.P.2
-
131
-
-
0037239887
-
Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana
-
1:CAS:528:DC%2BD3sXntVyrtA%3D%3D, 12530963, 10.1016/S1534-5807(02)00399-4
-
Cheng Y, Kato N, Wang W, Li J, Chen X: Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana. Dev Cell 2003, 4:53–66.
-
(2003)
Dev Cell
, vol.4
, pp. 53-66
-
-
Cheng, Y.1
Kato, N.2
Wang, W.3
Li, J.4
Chen, X.5
-
132
-
-
0025981257
-
Zinc finger-like structure in U1-specific protein C is essential for specific binding to U1 snRNP
-
1:CAS:528:DyaK3MXhtlygsrY%3D, 1826349, 10.1093/nar/19.3.449
-
Nelissen RL, Heinrichs V, Habets WJ, Simons F, Luhrmann R, van Venrooij WJ: Zinc finger-like structure in U1-specific protein C is essential for specific binding to U1 snRNP. Nucleic Acids Res 1991, 19:449–454.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 449-454
-
-
Nelissen, R.L.1
Heinrichs, V.2
Habets, W.J.3
Simons, F.4
Luhrmann, R.5
van Venrooij, W.J.6
-
133
-
-
0034708216
-
The U box is a modified RING finger - a common domain in ubiquitination
-
1:CAS:528:DC%2BD3cXhsFKrsbw%3D, 10704423, 10.1016/S0960-9822(00)00398-5
-
Aravind L, Koonin EV: The U box is a modified RING finger - a common domain in ubiquitination. Curr Biol 2000, 10:R132-R134.
-
(2000)
Curr Biol
, vol.10
, pp. R132-R134
-
-
Aravind, L.1
Koonin, E.V.2
-
134
-
-
0036629253
-
Protein quality control: U-box-containing E3 ubiquitin ligases join the fold
-
1:CAS:528:DC%2BD38XltFahsbc%3D, 12114026, 10.1016/S0968-0004(02)02125-4
-
Cyr DM, Hohfeld J, Patterson C: Protein quality control: U-box-containing E3 ubiquitin ligases join the fold. Trends Biochem Sci 2002, 27:368–375.
-
(2002)
Trends Biochem Sci
, vol.27
, pp. 368-375
-
-
Cyr, D.M.1
Hohfeld, J.2
Patterson, C.3
-
135
-
-
0033982075
-
The essential protein fap7 is involved in the oxidative stress response of Saccharomyces cerevisiae
-
1:CAS:528:DC%2BD3cXhs12qsrY%3D, 10692169, 10.1046/j.1365-2958.2000.01768.x
-
Juhnke H, Charizanis C, Latifi F, Krems B, Entian KD: The essential protein fap7 is involved in the oxidative stress response of Saccharomyces cerevisiae. Mol Microbiol 2000, 35:936–948.
-
(2000)
Mol Microbiol
, vol.35
, pp. 936-948
-
-
Juhnke, H.1
Charizanis, C.2
Latifi, F.3
Krems, B.4
Entian, K.D.5
|