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Volumn 514, Issue 7524, 2014, Pages 620-623

Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes

Author keywords

[No Author keywords available]

Indexed keywords

ANTENNAPEDIA PROTEIN; PARAHOX PROTEIN; PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; HOMEODOMAIN PROTEIN;

EID: 84908403148     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature13881     Document Type: Article
Times cited : (82)

References (30)
  • 1
    • 77955490196 scopus 로고    scopus 로고
    • The Amphimedon queenslandica genome and the evolution of animal complexity
    • Srivastava, M. et al. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 466, 720-726 (2010).
    • (2010) Nature , vol.466 , pp. 720-726
    • Srivastava, M.1
  • 2
    • 84868682519 scopus 로고    scopus 로고
    • Genome-wide analysis of the sox family in the calcareous sponge Sycon ciliatum: Multiple genes with unique expression patterns
    • Fortunato, S. et al. Genome-wide analysis of the sox family in the calcareous sponge Sycon ciliatum: multiple genes with unique expression patterns. EvoDevo 3, 14 (2012).
    • (2012) EvoDevo , vol.3 , pp. 14
    • Fortunato, S.1
  • 3
    • 44649163941 scopus 로고    scopus 로고
    • Genesis and expansion of metazoan transcription factor gene classes
    • Larroux, C. et al. Genesis and expansion of metazoan transcription factor gene classes. Mol. Biol. Evol. 25, 980-996 (2008).
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 980-996
    • Larroux, C.1
  • 4
    • 84902744018 scopus 로고    scopus 로고
    • Evolution of the Pax-Six-Eya-Dach network: The calcisponge case study
    • Fortunato, S. A., Leininger, S. & Adamska, M. Evolution of the Pax-Six-Eya-Dach network: the calcisponge case study. EvoDevo 5, 23 (2014).
    • (2014) EvoDevo , vol.5 , pp. 23
    • Fortunato, S.A.1    Leininger, S.2    Adamska, M.3
  • 5
    • 34047262520 scopus 로고    scopus 로고
    • The NK homeobox gene cluster predates the origin of Hox genes
    • Larroux, C. et al. The NK homeobox gene cluster predates the origin of Hox genes. Curr. Biol. 17, 706-710 (2007).
    • (2007) Curr. Biol. , vol.17 , pp. 706-710
    • Larroux, C.1
  • 6
    • 46449085798 scopus 로고    scopus 로고
    • Does the highgenedensity in the sponge NK homeobox gene cluster reflect limited regulatory capacity?
    • Fahey, B., Larroux, C., Woodcroft, B. J. & Degnan, B. M. Does the highgenedensity in the sponge NK homeobox gene cluster reflect limited regulatory capacity? Biol. Bull. 214, 205-217 (2008).
    • (2008) Biol. Bull. , vol.214 , pp. 205-217
    • Fahey, B.1    Larroux, C.2    Woodcroft, B.J.3    Degnan, B.M.4
  • 7
    • 79955094039 scopus 로고    scopus 로고
    • The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa
    • Ryan, J. F. et al. The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa. EvoDevo 1, 9 (2010).
    • (2010) EvoDevo , vol.1 , pp. 9
    • Ryan, J.F.1
  • 8
    • 84867843762 scopus 로고    scopus 로고
    • Ghost loci imply Hox and ParaHox existence inthe last commonancestor ofanimals
    • Mendivil Ramos, O., Barker, D. & Ferrier, D. E. K. Ghost loci imply Hox and ParaHox existence inthe last commonancestor ofanimals. Curr. Biol. 22,1951-1956(2012).
    • (2012) Curr. Biol. , vol.22 , pp. 1951-1956
    • Mendivil Ramos, O.1    Barker, D.2    Ferrier, D.E.K.3
  • 9
    • 84860443286 scopus 로고    scopus 로고
    • (eds Uriz, M. J., Maldonado, M., Becerro, M. A. & Xavier, T.) (Academic)
    • Wörheide, G. et al. in Advances in Marine Biology Vol. 61 (eds Uriz, M. J., Maldonado, M., Becerro, M. A. & Xavier, T.) 1-78 (Academic, 2012).
    • (2012) Advances in Marine Biology , vol.61 , pp. 1-78
    • Wörheide, G.1
  • 10
    • 34548537892 scopus 로고    scopus 로고
    • Poriferan ANTP genes: Primitively simple or secondarily reduced?
    • Peterson, K. J. & Sperling, E. A. Poriferan ANTP genes: primitively simple or secondarily reduced? Evol. Dev. 9, 405-408 (2007).
    • (2007) Evol. Dev. , vol.9 , pp. 405-408
    • Peterson, K.J.1    Sperling, E.A.2
  • 12
    • 28844477866 scopus 로고    scopus 로고
    • The genesis and evolution of homeobox gene clusters
    • Garcia-Fernàndez, J. The genesis and evolution of homeobox gene clusters. Nature Rev. Genet. 6, 881-892 (2005).
    • (2005) Nature Rev. Genet. , vol.6 , pp. 881-892
    • Garcia-Fernàndez, J.1
  • 13
    • 33747052849 scopus 로고    scopus 로고
    • Minimal ProtoHox cluster inferred from bilaterian and cnidarian Hox complements
    • Chourrout, D. et al. Minimal ProtoHox cluster inferred from bilaterian and cnidarian Hox complements. Nature 442, 684-687 (2006).
    • (2006) Nature , vol.442 , pp. 684-687
    • Chourrout, D.1
  • 14
    • 84901236288 scopus 로고    scopus 로고
    • Developmental gene expression provides clues to relationships between sponge and eumetazoan body plans
    • Leininger, S. et al. Developmental gene expression provides clues to relationships between sponge and eumetazoan body plans. Nature Commun. 5, 3905 (2014).
    • (2014) Nature Commun. , vol.5 , pp. 3905
    • Leininger, S.1
  • 15
    • 0038303006 scopus 로고    scopus 로고
    • Dispersal of NK homeobox gene clusters in amphioxus and humans
    • Luke, G. N. et al. Dispersal of NK homeobox gene clusters in amphioxus and humans. Proc. Natl Acad. Sci. USA 100, 5292-5295 (2003).
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 5292-5295
    • Luke, G.N.1
  • 16
    • 84862853837 scopus 로고    scopus 로고
    • Extensive chordate and annelid macrosynteny reveals ancestral homeobox gene organization
    • Hui, J. H. L. et al. Extensive chordate and annelid macrosynteny reveals ancestral homeobox gene organization. Mol. Biol. Evol. 29, 157-165 (2012).
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 157-165
    • Hui, J.H.L.1
  • 17
    • 55049140961 scopus 로고    scopus 로고
    • Do cnidarians have a ParaHox cluster? Analysis of synteny around a Nematostella homeobox gene cluster
    • Hui, J. H. L., Holland, P. W. H. & Ferrier, D. E. K. Do cnidarians have a ParaHox cluster? Analysis of synteny around a Nematostella homeobox gene cluster. Evol. Dev. 10, 725-730 (2008).
    • (2008) Evol. Dev. , vol.10 , pp. 725-730
    • Hui, J.H.L.1    Holland, P.W.H.2    Ferrier, D.E.K.3
  • 18
    • 4544320630 scopus 로고    scopus 로고
    • Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica
    • Seo, H.-C. et al. Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica. Nature 431, 67-71 (2004).
    • (2004) Nature , vol.431 , pp. 67-71
    • Seo, H.-C.1
  • 19
    • 43049106048 scopus 로고    scopus 로고
    • Complementary striped expression patterns of NK homeobox genes during segment formation in the annelid Platynereis
    • Saudemont, A. et al. Complementary striped expression patterns of NK homeobox genes during segment formation in the annelid Platynereis. Dev. Biol. 317, 430-443 (2008).
    • (2008) Dev. Biol. , vol.317 , pp. 430-443
    • Saudemont, A.1
  • 20
    • 0001779225 scopus 로고
    • Metamorphosis of calcareous sponges. 2. Cell rearrangement and differentiation in metamorphosis
    • Amano, S. & Hori, I. Metamorphosis of calcareous sponges. 2. Cell rearrangement and differentiation in metamorphosis. Invertebr. Reprod. Dev. 24, 13-26 (1993).
    • (1993) Invertebr. Reprod. Dev. , vol.24 , pp. 13-26
    • Amano, S.1    Hori, I.2
  • 21
    • 84908421274 scopus 로고    scopus 로고
    • Calcareous sponge genomes reveal complex evolution of a-carbonic anhydrases and two key biomineralization enzymes
    • (in the press)
    • Voigt, C., Adamski, M., Sluzek, M. & Adamska, M. Calcareous sponge genomes reveal complex evolution of a-carbonic anhydrases and two key biomineralization enzymes. BMC Evol. Biol. (in the press).
    • BMC Evol. Biol.
    • Voigt, C.1    Adamski, M.2    Sluzek, M.3    Adamska, M.4
  • 22
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S. & Huber, W. Differential expression analysis for sequence count data. Genome Biol. 11, R106 (2010).
    • (2010) Genome Biol. , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 23
    • 79961123152 scopus 로고    scopus 로고
    • RSEM: Accurate transcript quantification from RNA-seq data with or without a reference genome
    • Li, B. & Dewey, C. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12, 323 (2011).
    • (2011) BMC Bioinformatics , vol.12 , pp. 323
    • Li, B.1    Dewey, C.2
  • 24
    • 84942887758 scopus 로고    scopus 로고
    • SOAPdenovo2: An empirically improved memory-efficient shortread de novo assembler
    • Luo, R. et al. SOAPdenovo2: an empirically improved memory-efficient shortread de novo assembler. GigaScience 1, 18 (2012).
    • (2012) GigaScience , vol.1 , pp. 18
    • Luo, R.1
  • 26
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnol. 29, 644-652 (2011).
    • (2011) Nature Biotechnol. , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 27
    • 57649222295 scopus 로고    scopus 로고
    • Comprehensive survey and classification of homeobox genes in the genome of amphioxus, Branchiostoma floridae
    • Takatori, N. et al. Comprehensive survey and classification of homeobox genes in the genome of amphioxus, Branchiostoma floridae. Dev. Genes Evol. 218, 579-590 (2008).
    • (2008) Dev. Genes Evol. , vol.218 , pp. 579-590
    • Takatori, N.1
  • 28
    • 84859070353 scopus 로고    scopus 로고
    • HomeoDB2: Functional expansion of a comparative homeobox gene database for evolutionary developmental biology
    • Zhong, Y.-F. & Holland, P. HomeoDB2: functional expansion of a comparative homeobox gene database for evolutionary developmental biology. Evol. Dev. 13, 567-568 (2011).
    • (2011) Evol. Dev. , vol.13 , pp. 567-568
    • Zhong, Y.-F.1    Holland, P.2
  • 29
    • 79954529507 scopus 로고    scopus 로고
    • ProtTest 3: Fast selection of bestfit models of protein evolution
    • Darriba, D., Taboada, G., Doallo, R. & Posada, D. ProtTest 3: fast selection of bestfit models of protein evolution. Bioinformatics 27, 1164-1165 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 1164-1165
    • Darriba, D.1    Taboada, G.2    Doallo, R.3    Posada, D.4
  • 30
    • 33645816587 scopus 로고    scopus 로고
    • Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
    • Keane, T. M., Creevey, C., Pentony, M., Naughton, T. & Mclnerney, J. Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol. Biol. 6, 29 (2006).
    • (2006) BMC Evol. Biol. , vol.6 , pp. 29
    • Keane, T.M.1    Creevey, C.2    Pentony, M.3    Naughton, T.4    McLnerney, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.