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Volumn 166, Issue 2, 2004, Pages 935-945

Genomic Duplication, Fractionation and the Origin of Regulatory Novelty

Author keywords

[No Author keywords available]

Indexed keywords

LEUCINE ZIPPER PROTEIN;

EID: 1542338594     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.166.2.935     Document Type: Article
Times cited : (151)

References (38)
  • 1
    • 0027261431 scopus 로고
    • Comparative linkage maps of rice and maize genomes
    • AHN, S., and S. D. TANKSLEY, 1993 Comparative linkage maps of rice and maize genomes. Proc. Natl. Acad. Sci. USA 90: 7980-7984.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 7980-7984
    • Ahn, S.1    Tanksley, S.D.2
  • 3
    • 0032004775 scopus 로고    scopus 로고
    • Matrix attachment regions and the structural colinearity in the genomes of two grass species
    • AVRAMOVA, Z., A. TIKHONOV, M. CHEN and J. L. BENNETZEN, 1998 Matrix attachment regions and the structural colinearity in the genomes of two grass species. Nucleic Acids Res. 26: 761-767.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 761-767
    • Avramova, Z.1    Tikhonov, A.2    Chen, M.3    Bennetzen, J.L.4
  • 4
    • 0033891353 scopus 로고    scopus 로고
    • Extensive duplication and reshuffling in the Arabidopsis genome
    • BLANC, G., A. BARAKAT, R. GUYOT, R. COOKE and M. DELSENY, 2000 Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12: 1093-1101.
    • (2000) Plant Cell , vol.12 , pp. 1093-1101
    • Blanc, G.1    Barakat, A.2    Guyot, R.3    Cooke, R.4    Delseny, M.5
  • 5
    • 0004183824 scopus 로고
    • Kew Bulletin Additional Series XIII. Royal Botanical Gardens, Kew, Her Majesty's Stationary Office, London
    • CLAYTON, W. D., and S. RENVOIZE, 1986 Genera Graminum: Grasses of the World. Kew Bulletin Additional Series XIII, Royal Botanical Gardens, Kew, Her Majesty's Stationary Office, London.
    • (1986) Genera Graminum: Grasses of the World
    • Clayton, W.D.1    Renvoize, S.2
  • 6
    • 0034087970 scopus 로고    scopus 로고
    • Genome relationships: The grass model in current research
    • DEVOS, K. M., and M. D. GALE, 2000 Genome relationships: the grass model in current research. Plant Cell 12: 637-646.
    • (2000) Plant Cell , vol.12 , pp. 637-646
    • Devos, K.M.1    Gale, M.D.2
  • 7
    • 0033799618 scopus 로고    scopus 로고
    • Active conservation of noncoding sequences revealed by three-way species comparisons
    • DUBCHAK, I., M. BRUDNO, G. G. LOOTS, L. PACHTER, C. MAYOR et al., 2000 Active conservation of noncoding sequences revealed by three-way species comparisons. Genome Res. 10: 1304-1306.
    • (2000) Genome Res. , vol.10 , pp. 1304-1306
    • Dubchak, I.1    Brudno, M.2    Loots, G.G.3    Pachter, L.4    Mayor, C.5
  • 8
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • EWING, B., L. HILLIER, M. C. WENDL and P. GREEN, 1998 Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8: 175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 9
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • FORCE, A. M., M. LYNCH, F. B. PICKETT, A. AMORES and Y.-L. YAN, 1999 Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.M.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.-L.5
  • 10
    • 0035106822 scopus 로고    scopus 로고
    • Grasses as a single genetic system: Reassessment 2001
    • FREELING, M., 2001 Grasses as a single genetic system: reassessment 2001. Plant Physiol. 125: 1191-1197.
    • (2001) Plant Physiol. , vol.125 , pp. 1191-1197
    • Freeling, M.1
  • 11
    • 0037047037 scopus 로고    scopus 로고
    • Intraspecific violation of genetic colinearity and its implications in maize
    • FU, H., and H. DOONER, 2002 Intraspecific violation of genetic colinearity and its implications in maize. Proc. Natl. Acad. Sci. USA 99: 9573-9578.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 9573-9578
    • Fu, H.1    Dooner, H.2
  • 12
    • 0030959648 scopus 로고    scopus 로고
    • DNA sequence evidence for the segmental allotetraploid origin of maize
    • GAUT, B. S., and J. F. DOEBLEY, 1997 DNA sequence evidence for the segmental allotetraploid origin of maize. Proc. Natl. Acad. Sci. USA 94: 6809-6814.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 6809-6814
    • Gaut, B.S.1    Doebley, J.F.2
  • 13
    • 0037372327 scopus 로고    scopus 로고
    • A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions
    • GLAZKO, G. V., E. V. KOONIN, I. B. ROGOZINE and S. A. SHABALINA, 2003 A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions. Trends Genet. 19: 119-124.
    • (2003) Trends Genet. , vol.19 , pp. 119-124
    • Glazko, G.V.1    Koonin, E.V.2    Rogozine, I.B.3    Shabalina, S.A.4
  • 14
    • 0037023349 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
    • GOFF, S. A., D. RICKE, T.-H. LAN, G. PRESTING, R. WANG et al., 2002 A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296: 92-100.
    • (2002) Science , vol.296 , pp. 92-100
    • Goff, S.A.1    Ricke, D.2    Lan, T.-H.3    Presting, G.4    Wang, R.5
  • 15
    • 0002281363 scopus 로고
    • The part played by recurrent mutation in evolution
    • HALDANE, J. B. S., 1933 The part played by recurrent mutation in evolution. Am. Nat. 67: 5-19.
    • (1933) Am. Nat. , vol.67 , pp. 5-19
    • Haldane, J.B.S.1
  • 16
    • 0034284481 scopus 로고    scopus 로고
    • Conserved noncoding sequences are reliable guides to regulatory elements
    • HARDISON, R. C., 2000 Conserved noncoding sequences are reliable guides to regulatory elements. Trends Genet. 16: 369-372.
    • (2000) Trends Genet. , vol.16 , pp. 369-372
    • Hardison, R.C.1
  • 17
    • 0030722935 scopus 로고    scopus 로고
    • Long human-mouse sequence alignments reveal novel regulatory elements: A reason to sequence the mouse genome
    • HARDISON, R. C., J. OELTJEN and W. MILLER, 1997 Long human-mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome. Genome Res 7: 959-966.
    • (1997) Genome Res. , vol.7 , pp. 959-966
    • Hardison, R.C.1    Oeltjen, J.2    Miller, W.3
  • 18
    • 0030454253 scopus 로고    scopus 로고
    • Interactions of liguleless1 and liguleless2 function during ligule induction in maize
    • HARPER, L., and M. FREELING, 1996 Interactions of liguleless1 and liguleless2 function during ligule induction in maize. Genetics 144: 1871-1882.
    • (1996) Genetics , vol.144 , pp. 1871-1882
    • Harper, L.1    Freeling, M.2
  • 19
    • 0142059819 scopus 로고    scopus 로고
    • A complex history of rearrangement in an orthologous region of the maize, sorghum and rice genomes
    • ILIC, K., P. J. SANMIGUEL and J. L. BENNETZEN, 2003 A complex history of rearrangement in an orthologous region of the maize, sorghum and rice genomes. Proc. Natl. Acad. Sci USA 100: 12265-12270.
    • (2003) Proc. Natl. Acad. Sci USA , vol.100 , pp. 12265-12270
    • Ilic, K.1    Sanmiguel, P.J.2    Bennetzen, J.L.3
  • 20
    • 0141853991 scopus 로고    scopus 로고
    • Conserved noncoding sequences in the grasses
    • INADA, C. D., A. BASHIR, C. LEE, B. C. THOMAS, C. KO et al., 2003 Conserved noncoding sequences in the grasses. Genome Res. 13: 2030-2041.
    • (2003) Genome Res. , vol.13 , pp. 2030-2041
    • Inada, C.D.1    Bashir, A.2    Lee, C.3    Thomas, B.C.4    Ko, C.5
  • 22
    • 0035103949 scopus 로고    scopus 로고
    • Evolutionary history of the grasses
    • KELLOGG, E. A., 2001 Evolutionary history of the grasses. Plant Physiol. 125: 1198-1205.
    • (2001) Plant Physiol. , vol.125 , pp. 1198-1205
    • Kellogg, E.A.1
  • 23
    • 0028923469 scopus 로고
    • Transposon-induced promoter scrambling: A mechanism for the evolution of new alleles
    • KLOECKENER-GRUISSEM, B., and M. FREELING, 1995 Transposon-induced promoter scrambling: a mechanism for the evolution of new alleles. Proc. Natl. Acad. Sci. USA 92: 1836-1840.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 1836-1840
    • Kloeckener-Gruissem, B.1    Freeling, M.2
  • 25
    • 0003421005 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, MA
    • LI, W.-H., 1997 Molecular Evolution. Sinauer Associates, Sunderland, MA.
    • (1997) Molecular Evolution
    • Li, W.-H.1
  • 26
    • 0036105591 scopus 로고    scopus 로고
    • rVista for comparative sequence-based discovery of functional transcription factor binding sites
    • LOOTS, G. G., I. OVCHARENKI, L. PACHTER, I. DUBCHAK and E. RUBIN, 2002 rVista for comparative sequence-based discovery of functional transcription factor binding sites. Genome Res. 12: 832-839.
    • (2002) Genome Res. , vol.12 , pp. 832-839
    • Loots, G.G.1    Ovcharenki, I.2    Pachter, L.3    Dubchak, I.4    Rubin, E.5
  • 27
    • 0032519353 scopus 로고    scopus 로고
    • GeneMark.hmm: New solutions for gene finding
    • LUKASHIN, A. V., and M. BORODOVSKY, 1998 GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26: 1107-1115.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 1107-1115
    • Lukashin, A.V.1    Borodovsky, M.2
  • 28
    • 0033972072 scopus 로고    scopus 로고
    • The probability of duplicate gene preservation by subfunctionalization
    • LYNCH, M., and A. FORCE, 2000 The probability of duplicate gene preservation by subfunctionalization. Genetics 154: 459-473.
    • (2000) Genetics , vol.154 , pp. 459-473
    • Lynch, M.1    Force, A.2
  • 29
    • 0036241181 scopus 로고    scopus 로고
    • Phylogeny of Andropogoneae inferred from phytochrome B, GBSS1 and NDHF
    • MATHEWS, S., R. F. SPANGER, R. J. MASON-GAMER and E. A. KELLOGG, 2002 Phylogeny of Andropogoneae inferred from phytochrome B, GBSS1 and NDHF. Int. J. Plant Sci. 163: 441-450.
    • (2002) Int. J. Plant Sci. , vol.163 , pp. 441-450
    • Mathews, S.1    Spanger, R.F.2    Mason-Gamer, R.J.3    Kellogg, E.A.4
  • 32
    • 0033197494 scopus 로고    scopus 로고
    • Regional expression of the rice Kn1-type homeobox gene family during embryo, shoot and flower development
    • SENTOKU, M., S. YATUKA, N. KURATA, Y. ITO, H. KITANO et al., 1999 Regional expression of the rice Kn1-type homeobox gene family during embryo, shoot and flower development. Plant Cell 11: 1651-1664.
    • (1999) Plant Cell , vol.11 , pp. 1651-1664
    • Sentoku, M.1    Yatuka, S.2    Kurata, N.3    Ito, Y.4    Kitano, H.5
  • 34
    • 0036439421 scopus 로고    scopus 로고
    • Gene co-option in physiological and morphological evolution
    • TRUE, J. R., and S. B. CARROLL, 2002 Gene co-option in physiological and morphological evolution. Annu. Rev. Cell Dev. Biol. 18: 53-90.
    • (2002) Annu. Rev. Cell Dev. Biol. , vol.18 , pp. 53-90
    • True, J.R.1    Carroll, S.B.2
  • 35
    • 0034671866 scopus 로고    scopus 로고
    • The origins of genomic duplications in Arabidopsis
    • VISION, T. D., D. B. BROWN and S. D. TANKSLEY, 2000 The origins of genomic duplications in Arabidopsis. Science 290: 2114-2117.
    • (2000) Science , vol.290 , pp. 2114-2117
    • Vision, T.D.1    Brown, D.B.2    Tanksley, S.D.3
  • 36
    • 0033180515 scopus 로고    scopus 로고
    • The liguleless2 gene in maize functions during the transition from the vegetative to the reproductive shoot apex
    • WALSH, J., and M. FREELING, 1999 The liguleless2 gene in maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J. 19: 489-495.
    • (1999) Plant J. , vol.19 , pp. 489-495
    • Walsh, J.1    Freeling, M.2
  • 37
    • 0031975352 scopus 로고    scopus 로고
    • The maize gene liguleless2 encodes a basic leucine zipper protein involved in the establishment of the blade-sheath boundary
    • WALSH, J., C. A. WATERS and M. FREELING 1998 The maize gene liguleless2 encodes a basic leucine zipper protein involved in the establishment of the blade-sheath boundary. Genes Dev. 12: 208-218.
    • (1998) Genes Dev. , vol.12 , pp. 208-218
    • Walsh, J.1    Waters, C.A.2    Freeling, M.3
  • 38
    • 0032864281 scopus 로고    scopus 로고
    • Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize and the domesticated panicoids
    • WILSON, W. A., S. E. HARRINGTON, W. L. WOODMAN, M. LEE, M. E. SORRELLS et al., 1999 Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize and the domesticated panicoids. Genetics 153: 453-473.
    • (1999) Genetics , vol.153 , pp. 453-473
    • Wilson, W.A.1    Harrington, S.E.2    Woodman, W.L.3    Lee, M.4    Sorrells, M.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.