-
2
-
-
3042750437
-
-
(Sinauer Associates Inc., Sunderland, MA)
-
Coyne JA, Orr HA (2004) Speciation (Sinauer Associates Inc., Sunderland, MA).
-
(2004)
Speciation
-
-
Coyne, J.A.1
Orr, H.A.2
-
3
-
-
77249093924
-
The molecular evolutionary basis of species formation
-
Presgraves DC (2010) The molecular evolutionary basis of species formation. Nat Rev Genet 11:175-180.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 175-180
-
-
Presgraves, D.C.1
-
5
-
-
84907150192
-
The map-based sequence of the rice genome
-
International Rice Genome Sequencing Project
-
International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436:793-800.
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
6
-
-
20144366003
-
The genomes of Oryza sativa: A history of duplications
-
Yu J, et al. (2005) The genomes of Oryza sativa: A history of duplications. PLoS Biol 3: e38.
-
(2005)
PLoS Biol
, vol.3
-
-
Yu, J.1
-
7
-
-
0003820722
-
-
(Japan Sci Soc Press/Elsevier, Tokyo)
-
Oka H (1988) Origin of Cultivated Rice (Japan Sci Soc Press/Elsevier, Tokyo).
-
(1988)
Origin of Cultivated Rice
-
-
Oka, H.1
-
8
-
-
17444386263
-
Genetic structure and diversity in Oryza sativa L
-
Garris AJ, Tai TH, Coburn J, Kresovich S, McCouch S (2005) Genetic structure and diversity in Oryza sativa L. Genetics 169:1631-1638.
-
(2005)
Genetics
, vol.169
, pp. 1631-1638
-
-
Garris, A.J.1
Tai, T.H.2
Coburn, J.3
Kresovich, S.4
McCouch, S.5
-
9
-
-
37249045857
-
Extensive concerted evolution of rice paralogs and the road to regaining independence
-
Wang X, Tang H, Bowers JE, Feltus FA, Paterson AH (2007) Extensive concerted evolution of rice paralogs and the road to regaining independence. Genetics 177: 1753-1763.
-
(2007)
Genetics
, vol.177
, pp. 1753-1763
-
-
Wang, X.1
Tang, H.2
Bowers, J.E.3
Feltus, F.A.4
Paterson, A.H.5
-
10
-
-
49649129492
-
A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice
-
Chen J, et al. (2008) A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice. Proc Natl Acad Sci USA 105:11436-11441.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 11436-11441
-
-
Chen, J.1
-
11
-
-
57749112122
-
Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes
-
Long Y, et al. (2008) Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes. Proc Natl Acad Sci USA 105:18871-18876.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 18871-18876
-
-
Long, Y.1
-
12
-
-
76549125715
-
Mitochondrial gene in the nuclear genome induces reproductive barrier in rice
-
Yamagata Y, et al. (2010) Mitochondrial gene in the nuclear genome induces reproductive barrier in rice. Proc Natl Acad Sci USA 107:1494-1499.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 1494-1499
-
-
Yamagata, Y.1
-
13
-
-
77949889853
-
Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice
-
Yamamoto E, et al. (2010) Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice. Mol Genet Genomics 283: 305-315.
-
(2010)
Mol Genet Genomics
, vol.283
, pp. 305-315
-
-
Yamamoto, E.1
-
14
-
-
0034760722
-
A genome-wide survey of reproductive barriers in an intraspecific hybrid
-
Harushima Y, NakagahraM, Yano M, Sasaki T, Kurata N (2001) A genome-wide survey of reproductive barriers in an intraspecific hybrid. Genetics 159:883-892.
-
(2001)
Genetics
, vol.159
, pp. 883-892
-
-
Harushima, Y.1
Nakagahram Yano, M.2
Sasaki, T.3
Kurata, N.4
-
15
-
-
0031908205
-
A high-density rice genetic linkage map with 2275 markers using a single F2 population
-
Harushima Y, et al. (1998) A high-density rice genetic linkage map with 2275 markers using a single F2 population. Genetics 148:479-494.
-
(1998)
Genetics
, vol.148
, pp. 479-494
-
-
Harushima, Y.1
-
17
-
-
0031239092
-
Origin, dispersal, cultivation and variation of rice
-
Khush GS (1997) Origin, dispersal, cultivation and variation of rice. Plant Mol Biol 35: 25-34.
-
(1997)
Plant Mol Biol
, vol.35
, pp. 25-34
-
-
Khush, G.S.1
-
18
-
-
0037225254
-
Polyphyletic origin of cultivated rice: Based on the interspersion pattern of SINEs
-
Cheng C, et al. (2003) Polyphyletic origin of cultivated rice: Based on the interspersion pattern of SINEs. Mol Biol Evol 20:67-75.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 67-75
-
-
Cheng, C.1
-
19
-
-
34548215648
-
Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs
-
Xu JH, Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E (2007) Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs. Genes Genet Syst 82:217-229.
-
(2007)
Genes Genet Syst
, vol.82
, pp. 217-229
-
-
Xu, J.H.1
Cheng, C.2
Tsuchimoto, S.3
Ohtsubo, H.4
Ohtsubo, E.5
-
20
-
-
58449132916
-
Genes and mutations underlying domestication transitions in grasses
-
Sang T (2009) Genes and mutations underlying domestication transitions in grasses. Plant Physiol 149:63-70.
-
(2009)
Plant Physiol
, vol.149
, pp. 63-70
-
-
Sang, T.1
-
21
-
-
33745439823
-
Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa
-
Londo JP, Chiang YC, Hung KH, Chiang TY, Schaal BA (2006) Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa. Proc Natl Acad Sci USA 103:9578-9583.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 9578-9583
-
-
Londo, J.P.1
Chiang, Y.C.2
Hung, K.H.3
Chiang, T.Y.4
Schaal, B.A.5
-
22
-
-
68149145780
-
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
-
McNally KL, et al. (2009) Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc Natl Acad Sci USA 106:12273-12278.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 12273-12278
-
-
McNally, K.L.1
-
23
-
-
62649099646
-
The 'inner circle' of the cereal genomes
-
Bolot S, et al. (2009) The 'inner circle' of the cereal genomes. Curr Opin Plant Biol 12: 119-125.
-
(2009)
Curr Opin Plant Biol
, vol.12
, pp. 119-125
-
-
Bolot, S.1
-
24
-
-
0141564555
-
Evidence that rice and other cereals are ancient aneuploids
-
Vandepoele K, Simillion C, Van de Peer Y (2003) Evidence that rice and other cereals are ancient aneuploids. Plant Cell 15:2192-2202.
-
(2003)
Plant Cell
, vol.15
, pp. 2192-2202
-
-
Vandepoele, K.1
Simillion, C.2
Van De Peer, Y.3
-
25
-
-
3042836334
-
Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
-
Paterson AH, Bowers JE, Chapman BA (2004) Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc Natl Acad Sci USA 101:9903-9908.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9903-9908
-
-
Paterson, A.H.1
Bowers, J.E.2
Chapman, B.A.3
-
26
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson AH, et al. (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457:551-556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
-
27
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable PS, et al. (2009) The B73 maize genome: Complexity, diversity, and dynamics. Science 326:1112-1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
-
28
-
-
76749150030
-
Genome sequencing and analysis of the model grass Brachypodium distachyon
-
International Brachypodium Initiative
-
International Brachypodium Initiative (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463:763-768.
-
(2010)
Nature
, vol.463
, pp. 763-768
-
-
-
29
-
-
70349325524
-
The evolutionary significance of ancient genome duplications
-
Van de Peer Y, Maere S, Meyer A (2009) The evolutionary significance of ancient genome duplications. Nat Rev Genet 10:725-732.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 725-732
-
-
Van De Peer, Y.1
Maere, S.2
Meyer, A.3
-
30
-
-
0001604836
-
A model for divergent, allopatric speciation of polyploid pteridophytes resulting from silencing of duplicate-gene expression
-
Werth CR, Windham MD (1991) A model for divergent, allopatric speciation of polyploid pteridophytes resulting from silencing of duplicate-gene expression. Am Nat 137:515-526.
-
(1991)
Am Nat
, vol.137
, pp. 515-526
-
-
Werth, C.R.1
Windham, M.D.2
-
31
-
-
0034529964
-
The origin of interspecific genomic incompatibility via gene duplication
-
Lynch M, Force A (2000) The origin of interspecific genomic incompatibility via gene duplication. Am Nat 156:590-605.
-
(2000)
Am Nat
, vol.156
, pp. 590-605
-
-
Lynch, M.1
Force, A.2
-
32
-
-
0035368224
-
Genome duplication, divergent resolution and speciation
-
Taylor JS, Van de Peer Y, Meyer A (2001) Genome duplication, divergent resolution and speciation. Trends Genet 17:299-301.
-
(2001)
Trends Genet
, vol.17
, pp. 299-301
-
-
Taylor, J.S.1
Van De Peer, Y.2
Meyer, A.3
-
33
-
-
59149093200
-
Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana
-
Bikard D, et al. (2009) Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana. Science 323:623-626.
-
(2009)
Science
, vol.323
, pp. 623-626
-
-
Bikard, D.1
-
34
-
-
3142732892
-
Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
-
Blanc G, Wolfe KH (2004) Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16:1679-1691.
-
(2004)
Plant Cell
, vol.16
, pp. 1679-1691
-
-
Blanc, G.1
Wolfe, K.H.2
-
35
-
-
62549118744
-
Structure and expression analysis of rice paleo duplications
-
Throude M, et al. (2009) Structure and expression analysis of rice paleo duplications. Nucleic Acids Res 37:1248-1259.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1248-1259
-
-
Throude, M.1
-
36
-
-
0037313579
-
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
-
Blanc G, Hokamp K, Wolfe KH (2003) A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res 13:137-144.
-
(2003)
Genome Res
, vol.13
, pp. 137-144
-
-
Blanc, G.1
Hokamp, K.2
Wolfe, K.H.3
-
37
-
-
0031762432
-
Physical mapping of duplicated genomic regions of two chromosome ends in rice
-
Wu J, et al. (1998) Physical mapping of duplicated genomic regions of two chromosome ends in rice. Genetics 150:1595-1603.
-
(1998)
Genetics
, vol.150
, pp. 1595-1603
-
-
Wu, J.1
-
38
-
-
0027984625
-
A 300 kilobase interval genetic map of rice including 883 expressed sequences
-
Kurata N, et al. (1994) A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nat Genet 8:365-372.
-
(1994)
Nat Genet
, vol.8
, pp. 365-372
-
-
Kurata, N.1
-
39
-
-
0032078072
-
DCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: Experimental applications in Arabidopsis thaliana genetics
-
Neff MM, Neff JD, Chory J, Pepper AE (1998) dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: Experimental applications in Arabidopsis thaliana genetics. Plant J 14:387-392.
-
(1998)
Plant J
, vol.14
, pp. 387-392
-
-
Neff, M.M.1
Neff, J.D.2
Chory, J.3
Pepper, A.E.4
-
40
-
-
33846970562
-
Evaluation of 'quick and dirty' DNA extraction methods for marker-assisted selection in rice (Oryza sativa L
-
Collard BCY, Das A, Virk PS, Mackill DJ (2007) Evaluation of 'quick and dirty' DNA extraction methods for marker-assisted selection in rice (Oryza sativa L.). Plant Breed 126:47-50.
-
(2007)
Plant Breed
, vol.126
, pp. 47-50
-
-
Bcy, C.1
Das, A.2
Virk, P.S.3
MacKill, D.J.4
-
41
-
-
39149134261
-
Disruption of KNOX gene suppression in leaf by introducing its cDNA in rice
-
Ito Y, Kurata N (2008) Disruption of KNOX gene suppression in leaf by introducing its cDNA in rice. Plant Sci 174:279-289.
-
(2008)
Plant Sci
, vol.174
, pp. 279-289
-
-
Ito, Y.1
Kurata, N.2
-
42
-
-
34548859240
-
A protocol for Agrobacterium-mediated transformation in rice
-
Nishimura A, Aichi I, Matsuoka M (2006) A protocol for Agrobacterium-mediated transformation in rice. Nat Protoc 1:2796-2802.
-
(2006)
Nat Protoc
, vol.1
, pp. 2796-2802
-
-
Nishimura, A.1
Aichi, I.2
Matsuoka, M.3
-
43
-
-
0027232818
-
Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development
-
Kouchi H, Hata S (1993) Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development. Mol Gen Genet 238:106-119.
-
(1993)
Mol Gen Genet
, vol.238
, pp. 106-119
-
-
Kouchi, H.1
Hata, S.2
-
45
-
-
34248679167
-
Tricine-SDS-PAGE
-
Schägger H (2006) Tricine-SDS-PAGE. Nat Protoc 1:16-22.
-
(2006)
Nat Protoc
, vol.1
, pp. 16-22
-
-
Schägger, H.1
-
46
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
47
-
-
0036814150
-
Evolutionary relationships among rice species with AA genome based on SINE insertion analysis
-
Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E (2002) Evolutionary relationships among rice species with AA genome based on SINE insertion analysis. Genes Genet Syst 77:323-334.
-
(2002)
Genes Genet Syst
, vol.77
, pp. 323-334
-
-
Cheng, C.1
Tsuchimoto, S.2
Ohtsubo, H.3
Ohtsubo, E.4
|