메뉴 건너뛰기




Volumn 11, Issue 2, 2012, Pages 142-155

Dna methylation in amphioxus: From ancestral functions to new roles in vertebrates

Author keywords

Amphioxus; Chordate and vertebrate genome evolution; Conserved genomic synteny; DNA methylation; DNMT and MBD; Transposable elements

Indexed keywords

DNA METHYLTRANSFERASE; METHYL CPG BINDING PROTEIN;

EID: 84859055193     PISSN: 20412649     EISSN: 20412657     Source Type: Journal    
DOI: 10.1093/bfgp/els009     Document Type: Article
Times cited : (44)

References (78)
  • 1
    • 84655164284 scopus 로고    scopus 로고
    • De novo DNA methylation: a germ cell perspective
    • Smallwood SA, Kelsey G. De novo DNA methylation: a germ cell perspective. Trends Genet 2012;28:33-42.
    • (2012) Trends Genet , vol.28 , pp. 33-42
    • Smallwood, S.A.1    Kelsey, G.2
  • 2
    • 80755187797 scopus 로고    scopus 로고
    • Genomic imprinting: a Mammalian epigenetic discovery model
    • Barlow DP. Genomic imprinting: a Mammalian epigenetic discovery model. Annu Rev Genet 2011;45:379-403.
    • (2011) Annu Rev Genet , vol.45 , pp. 379-403
    • Barlow, D.P.1
  • 4
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird A. DNA methylation patterns and epigenetic memory. Genes Dev 2002;16:6-21.
    • (2002) Genes Dev , vol.16 , pp. 6-21
    • Bird, A.1
  • 5
    • 15744401773 scopus 로고    scopus 로고
    • Eukaryotic cytosine methyltransferases
    • Goll MG, Bestor TH. Eukaryotic cytosine methyltransferases. Annu Rev Biochem 2005;74:481-514.
    • (2005) Annu Rev Biochem , vol.74 , pp. 481-514
    • Goll, M.G.1    Bestor, T.H.2
  • 6
    • 0031860739 scopus 로고    scopus 로고
    • Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases
    • Okano M, Xie S, Li E. Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases. Nat Genet 1998;19:219-20.
    • (1998) Nat Genet , vol.19 , pp. 219-220
    • Okano, M.1    Xie, S.2    Li, E.3
  • 7
    • 0033615717 scopus 로고    scopus 로고
    • DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
    • Okano M, Bell DW, Haber DA, et al. DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 1999;99: 247-57.
    • (1999) Cell , vol.99 , pp. 247-257
    • Okano, M.1    Bell, D.W.2    Haber, D.A.3
  • 8
    • 0026439115 scopus 로고
    • A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei
    • Leonhardt H, Page AW, Weier HU, et al. A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei. Cell 1992;71:865-73.
    • (1992) Cell , vol.71 , pp. 865-873
    • Leonhardt, H.1    Page, A.W.2    Weier, H.U.3
  • 9
    • 31144449613 scopus 로고    scopus 로고
    • Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2
    • Goll MG, Kirpekar F, Maggert KA, et al. Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science 2006;311:395-8.
    • (2006) Science , vol.311 , pp. 395-398
    • Goll, M.G.1    Kirpekar, F.2    Maggert, K.A.3
  • 10
    • 33745253953 scopus 로고    scopus 로고
    • Two substrates are better than one: dual specificities for Dnmt2 methyltransferases
    • Jeltsch A, Nellen W, Lyko F. Two substrates are better than one: dual specificities for Dnmt2 methyltransferases. Trends Biochem Sci 2006;31:306-8.
    • (2006) Trends Biochem Sci , vol.31 , pp. 306-308
    • Jeltsch, A.1    Nellen, W.2    Lyko, F.3
  • 11
    • 0024673303 scopus 로고
    • CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation
    • Iguchi-Ariga SM, Schaffner W. CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation. Genes Dev 1989;3:612-9.
    • (1989) Genes Dev , vol.3 , pp. 612-619
    • Iguchi-Ariga, S.M.1    Schaffner, W.2
  • 12
    • 0025294471 scopus 로고
    • CpG methylation inhibits proenkephalin gene expression and binding of the transcription factor AP-2
    • Comb M, Goodman HM. CpG methylation inhibits proenkephalin gene expression and binding of the transcription factor AP-2. Nucleic Acids Res 1990;18: 3975-82.
    • (1990) Nucleic Acids Res , vol.18 , pp. 3975-3982
    • Comb, M.1    Goodman, H.M.2
  • 13
    • 0034713375 scopus 로고    scopus 로고
    • Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
    • Bell AC, Felsenfeld G. Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene. Nature 2000;405:482-5.
    • (2000) Nature , vol.405 , pp. 482-485
    • Bell, A.C.1    Felsenfeld, G.2
  • 14
    • 0037372003 scopus 로고    scopus 로고
    • Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals
    • Jaenisch R, Bird A. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat Genet 2003;33(Suppl):245-54.
    • (2003) Nat Genet , vol.33 , Issue.SUPPL. , pp. 245-254
    • Jaenisch, R.1    Bird, A.2
  • 15
    • 33748298837 scopus 로고    scopus 로고
    • MBD family proteins: reading the epigenetic code
    • Fatemi M, Wade PA. MBD family proteins: reading the epigenetic code. JCell Sci 2006;119:3033-7.
    • (2006) JCell Sci , vol.119 , pp. 3033-3037
    • Fatemi, M.1    Wade, P.A.2
  • 16
    • 0031837109 scopus 로고    scopus 로고
    • Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription
    • Jones PL, Veenstra GJ, Wade PA, et al. Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription. Nat Genet 1998;19:187-91.
    • (1998) Nat Genet , vol.19 , pp. 187-191
    • Jones, P.L.1    Veenstra, G.J.2    Wade, P.A.3
  • 17
    • 0032574977 scopus 로고    scopus 로고
    • Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex
    • Nan X, Ng HH, Johnson CA, et al. Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex. Nature 1998;393:386-9.
    • (1998) Nature , vol.393 , pp. 386-389
    • Nan, X.1    Ng, H.H.2    Johnson, C.A.3
  • 18
    • 0035542974 scopus 로고    scopus 로고
    • Methyl CpG-binding proteins and transcriptional repression
    • Wade PA. Methyl CpG-binding proteins and transcriptional repression. Bioessays 2001;23:1131-7.
    • (2001) Bioessays , vol.23 , pp. 1131-1137
    • Wade, P.A.1
  • 19
    • 0030977310 scopus 로고    scopus 로고
    • A component of the transcriptional repressor MeCP1 shares a motif with DNA methyltransferase and HRX proteins
    • Cross SH, Meehan RR, Nan X, et al. A component of the transcriptional repressor MeCP1 shares a motif with DNA methyltransferase and HRX proteins. Nat Genet 1997;16: 256-9.
    • (1997) Nat Genet , vol.16 , pp. 256-259
    • Cross, S.H.1    Meehan, R.R.2    Nan, X.3
  • 20
    • 0033973587 scopus 로고    scopus 로고
    • Active repression of methylated genes by the chromosomal protein MBD1
    • Ng HH, Jeppesen P, Bird A. Active repression of methylated genes by the chromosomal protein MBD1. Mol Cell Biol 2000;20:1394-406.
    • (2000) Mol Cell Biol , vol.20 , pp. 1394-1406
    • Ng, H.H.1    Jeppesen, P.2    Bird, A.3
  • 21
    • 0033946982 scopus 로고    scopus 로고
    • Mechanism of transcriptional regulation by methyl-CpG binding protein MBD1
    • Fujita N, Shimotake N, Ohki I, et al. Mechanism of transcriptional regulation by methyl-CpG binding protein MBD1. Mol Cell Biol 2000;20:5107-18.
    • (2000) Mol Cell Biol , vol.20 , pp. 5107-5118
    • Fujita, N.1    Shimotake, N.2    Ohki, I.3
  • 22
    • 0037406067 scopus 로고    scopus 로고
    • The methyl-CpG binding domain and the evolving role of DNA methylation in animals
    • Hendrich B, Tweedie S. The methyl-CpG binding domain and the evolving role of DNA methylation in animals. TrendsGenet 2003;19:269-77.
    • (2003) TrendsGenet , vol.19 , pp. 269-277
    • Hendrich, B.1    Tweedie, S.2
  • 23
    • 0033601073 scopus 로고    scopus 로고
    • Methylation-induced repression-belts, braces, and chromatin
    • Bird AP, Wolffe AP. Methylation-induced repression-belts, braces, and chromatin. Cell 1999;99:451-4.
    • (1999) Cell , vol.99 , pp. 451-454
    • Bird, A.P.1    Wolffe, A.P.2
  • 24
    • 10644222635 scopus 로고    scopus 로고
    • MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex
    • Jiang CL, Jin SG, Pfeifer GP. MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex. J Biol Chem 2004;279:52456-64.
    • (2004) J Biol Chem , vol.279 , pp. 52456-52464
    • Jiang, C.L.1    Jin, S.G.2    Pfeifer, G.P.3
  • 25
    • 0037069366 scopus 로고    scopus 로고
    • Mbd4 inactivation increases Cright-arrowT transition mutations and promotes gastrointestinal tumor formation
    • Wong E, Yang K, Kuraguchi M, et al. Mbd4 inactivation increases Cright-arrowT transition mutations and promotes gastrointestinal tumor formation. Proc Natl Acad Sci USA 2002;99:14937-42.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 14937-14942
    • Wong, E.1    Yang, K.2    Kuraguchi, M.3
  • 26
    • 77957809220 scopus 로고    scopus 로고
    • The human proteins MBD5 and MBD6 associate with heterochromatin but they do not bind methylated DNA
    • Laget S, Joulie M, Le Masson F, et al. The human proteins MBD5 and MBD6 associate with heterochromatin but they do not bind methylated DNA. PLoSONE 2010;5:e11982.
    • (2010) PLoSONE , vol.5
    • Laget, S.1    Joulie, M.2    Le Masson, F.3
  • 27
    • 0031792779 scopus 로고    scopus 로고
    • Identification and characterization of a family of mammalian methyl-CpG binding proteins
    • Hendrich B, Bird A. Identification and characterization of a family of mammalian methyl-CpG binding proteins. Mol Cell Biol 1998;18:6538-47.
    • (1998) Mol Cell Biol , vol.18 , pp. 6538-6547
    • Hendrich, B.1    Bird, A.2
  • 28
    • 0032706939 scopus 로고    scopus 로고
    • Vestiges of a DNA methylation system in Drosophila melanogaster?
    • Tweedie S, Ng HH, Barlow AL, et al. Vestiges of a DNA methylation system in Drosophila melanogaster? Nat Genet 1999;23:389-90.
    • (1999) Nat Genet , vol.23 , pp. 389-390
    • Tweedie, S.1    Ng, H.H.2    Barlow, A.L.3
  • 29
    • 16344371940 scopus 로고    scopus 로고
    • Evolutionary diversification of DNA methyltransferases in eukaryotic genomes
    • Ponger L, Li WH. Evolutionary diversification of DNA methyltransferases in eukaryotic genomes. Mol Biol Evol 2005;22:1119-28.
    • (2005) Mol Biol Evol , vol.22 , pp. 1119-1128
    • Ponger, L.1    Li, W.H.2
  • 30
  • 31
    • 57649210781 scopus 로고    scopus 로고
    • Evolution of DNA-methylation machinery: DNA methyltransferases and methyl-DNA binding proteins in the amphioxus Branchiostoma floridae
    • Albalat R. Evolution of DNA-methylation machinery: DNA methyltransferases and methyl-DNA binding proteins in the amphioxus Branchiostoma floridae. Dev Genes Evol 2008;218:691-701.
    • (2008) Dev Genes Evol , vol.218 , pp. 691-701
    • Albalat, R.1
  • 32
    • 35649004898 scopus 로고    scopus 로고
    • A new synthesis in epigenetics: towards a unified function of DNA methylation from invertebrates to vertebrates
    • Mandrioli M. A new synthesis in epigenetics: towards a unified function of DNA methylation from invertebrates to vertebrates. CellMol Life Sci 2007;64:2522-4.
    • (2007) CellMol Life Sci , vol.64 , pp. 2522-2524
    • Mandrioli, M.1
  • 33
    • 13444279047 scopus 로고    scopus 로고
    • Evolution of dnmt-2 and mbd-2-like genes in the free-living nematodes Pristionchus pacificus. Caenorhabditis elegans and Caenorhabditis briggsae
    • Gutierrez A, Sommer RJ. Evolution of dnmt-2 and mbd-2-like genes in the free-living nematodes Pristionchus pacificus, Caenorhabditis elegans and Caenorhabditis briggsae. NucleicAcidsRes 2004;32:6388-96.
    • (2004) NucleicAcidsRes , vol.32 , pp. 6388-6396
    • Gutierrez, A.1    Sommer, R.J.2
  • 34
    • 5144229657 scopus 로고    scopus 로고
    • The genome sequence of silkworm, Bombyx mori
    • Mita K, Kasahara M, Sasaki S, et al. The genome sequence of silkworm, Bombyx mori. DNA Res 2004;11:27-35.
    • (2004) DNA Res , vol.11 , pp. 27-35
    • Mita, K.1    Kasahara, M.2    Sasaki, S.3
  • 35
    • 1942440409 scopus 로고    scopus 로고
    • Conservation of DNA methylation in dipteran insects
    • Marhold J, Rothe N, Pauli A, et al. Conservation of DNA methylation in dipteran insects. Insect Mol Biol 2004;13: 117-23.
    • (2004) Insect Mol Biol , vol.13 , pp. 117-123
    • Marhold, J.1    Rothe, N.2    Pauli, A.3
  • 36
    • 33750486851 scopus 로고    scopus 로고
    • Functional CpG methylation system in a social insect
    • Wang Y, Jorda M, Jones PL, et al. Functional CpG methylation system in a social insect. Science 2006;314:645-7.
    • (2006) Science , vol.314 , pp. 645-647
    • Wang, Y.1    Jorda, M.2    Jones, P.L.3
  • 38
    • 79953061203 scopus 로고    scopus 로고
    • Insects as innovative models for functional studies of DNA methylation
    • Lyko F, Maleszka R. Insects as innovative models for functional studies of DNA methylation. Trends Genet 2011;27: 127-31.
    • (2011) Trends Genet , vol.27 , pp. 127-131
    • Lyko, F.1    Maleszka, R.2
  • 39
    • 0031027468 scopus 로고    scopus 로고
    • Methylation of genomes and genes at the invertebrate-vertebrate boundary
    • Tweedie S, Charlton J, Clark V, et al. Methylation of genomes and genes at the invertebrate-vertebrate boundary. Mol Cell Biol 1997;17:1469-75.
    • (1997) Mol Cell Biol , vol.17 , pp. 1469-1475
    • Tweedie, S.1    Charlton, J.2    Clark, V.3
  • 40
    • 32044455298 scopus 로고    scopus 로고
    • Large-scale structure of genomic methylation patterns
    • Rollins RA, Haghighi F, Edwards JR, et al. Large-scale structure of genomic methylation patterns. Genome Res 2006;16:157-63.
    • (2006) Genome Res , vol.16 , pp. 157-163
    • Rollins, R.A.1    Haghighi, F.2    Edwards, J.R.3
  • 41
    • 34248195006 scopus 로고    scopus 로고
    • CpG methylation is targeted to transcription units in an invertebrate genome
    • Suzuki MM, Kerr AR, De Sousa D, et al. CpG methylation is targeted to transcription units in an invertebrate genome. Genome Res 2007;17:625-31.
    • (2007) Genome Res , vol.17 , pp. 625-631
    • Suzuki, M.M.1    Kerr, A.R.2    De Sousa, D.3
  • 42
    • 77957920814 scopus 로고    scopus 로고
    • Gradual transition from mosaic to global DNA methylation patterns during deuterostome evolution
    • Okamura K, Matsumoto KA, Nakai K. Gradual transition from mosaic to global DNA methylation patterns during deuterostome evolution. BMC Bioinformatics 2010; 11(Suppl. 7):S2.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 7
    • Okamura, K.1    Matsumoto, K.A.2    Nakai, K.3
  • 43
    • 77952734605 scopus 로고    scopus 로고
    • Conservation and divergence of methylation patterning in plants and animals
    • Feng S, Cokus SJ, Zhang X, et al. Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad SciUSA 2010;107:8689-94.
    • (2010) Proc Natl Acad SciUSA , vol.107 , pp. 8689-8694
    • Feng, S.1    Cokus, S.J.2    Zhang, X.3
  • 44
    • 74549184089 scopus 로고    scopus 로고
    • Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    • Werren JH, Richards S, Desjardins CA, etal. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science 2010;327:343-8.
    • (2010) Science , vol.327 , pp. 343-348
    • Werren, J.H.1    Richards, S.2    Desjardins, C.A.3
  • 45
    • 0024582758 scopus 로고
    • Cytosine-specific type II DNA methyltransferases. A conserved enzyme core with variable target-recognizing domains
    • Lauster R, Trautner TA, Noyer-Weidner M. Cytosine-specific type II DNA methyltransferases. A conserved enzyme core with variable target-recognizing domains. JMol Biol 1989;206:305-12.
    • (1989) JMol Biol , vol.206 , pp. 305-312
    • Lauster, R.1    Trautner, T.A.2    Noyer-Weidner, M.3
  • 46
    • 0024604147 scopus 로고
    • Predictive motifs derived from cytosine methyltransferases
    • Posfai J, Bhagwat AS, Posfai G, et al. Predictive motifs derived from cytosine methyltransferases. Nucleic Acids Res 1989;17:2421-35.
    • (1989) Nucleic Acids Res , vol.17 , pp. 2421-2435
    • Posfai, J.1    Bhagwat, A.S.2    Posfai, G.3
  • 48
    • 47149092240 scopus 로고    scopus 로고
    • cDNA cloning, expression, and characterization of methyl-CpG-binding domain type 2/3 proteins from starfish and sea urchin
    • Matsumoto M, Toraya T. cDNA cloning, expression, and characterization of methyl-CpG-binding domain type 2/3 proteins from starfish and sea urchin. Gene 2008;420: 125-34.
    • (2008) Gene , vol.420 , pp. 125-134
    • Matsumoto, M.1    Toraya, T.2
  • 49
    • 0036683055 scopus 로고    scopus 로고
    • Co-operation and communication between the human maintenance and de novo DNA (cytosine-5) methyltransferases
    • Kim GD, Ni J, Kelesoglu N, et al. Co-operation and communication between the human maintenance and de novo DNA (cytosine-5) methyltransferases. EMBO J 2002;21: 4183-95.
    • (2002) EMBO J , vol.21 , pp. 4183-4195
    • Kim, G.D.1    Ni, J.2    Kelesoglu, N.3
  • 50
    • 0033945861 scopus 로고    scopus 로고
    • DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci
    • Rountree MR, Bachman KE, Baylin SB. DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci. Nat Genet 2000;25:269-77.
    • (2000) Nat Genet , vol.25 , pp. 269-277
    • Rountree, M.R.1    Bachman, K.E.2    Baylin, S.B.3
  • 51
    • 0030770835 scopus 로고    scopus 로고
    • Human DNA-(cytosine-5) methyltransferase-PCNA complex as a target for p21WAF1
    • Chuang LS, Ian HI, Koh TW, et al. Human DNA-(cytosine-5) methyltransferase-PCNA complex as a target for p21WAF1. Science 1997;277:1996-2000.
    • (1997) Science , vol.277 , pp. 1996-2000
    • Chuang, L.S.1    Ian, H.I.2    Koh, T.W.3
  • 52
    • 33847155964 scopus 로고    scopus 로고
    • Zinc-fingers and homeoboxes 1 (ZHX1) binds DNA methyltransferase (DNMT) 3B to enhance DNMT3B-mediated transcriptional repression
    • Kim SH, Park J, Choi MC, et al. Zinc-fingers and homeoboxes 1 (ZHX1) binds DNA methyltransferase (DNMT) 3B to enhance DNMT3B-mediated transcriptional repression. Biochem Biophys Res Commun 2007;355: 318-23.
    • (2007) Biochem Biophys Res Commun , vol.355 , pp. 318-323
    • Kim, S.H.1    Park, J.2    Choi, M.C.3
  • 53
    • 0035794163 scopus 로고    scopus 로고
    • Stable histone deacetylase complexes distinguished by the presence of SANT domain proteins CoREST/kiaa0071 and Mta-L1
    • Humphrey GW, Wang Y, Russanova VR, et al. Stable histone deacetylase complexes distinguished by the presence of SANT domain proteins CoREST/kiaa0071 and Mta-L1. J Biol Chem 2001;276:6817-24.
    • (2001) J Biol Chem , vol.276 , pp. 6817-6824
    • Humphrey, G.W.1    Wang, Y.2    Russanova, V.R.3
  • 54
    • 0037174882 scopus 로고    scopus 로고
    • Two highly related p66 proteins comprise a new family of potent transcriptional repressors interacting with MBD2 and MBD3
    • Brackertz M, Boeke J, Zhang R, et al. Two highly related p66 proteins comprise a new family of potent transcriptional repressors interacting with MBD2 and MBD3. J Biol Chem 2002;277:40958-66.
    • (2002) J Biol Chem , vol.277 , pp. 40958-40966
    • Brackertz, M.1    Boeke, J.2    Zhang, R.3
  • 55
    • 78651324347 scopus 로고    scopus 로고
    • The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
    • Szklarczyk D, Franceschini A, Kuhn M, etal. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. NucleicAcidsRes 2010; 39:D561-8.
    • (2010) NucleicAcidsRes , vol.39
    • Szklarczyk, D.1    Franceschini, A.2    Kuhn, M.3
  • 56
    • 0037413695 scopus 로고    scopus 로고
    • Structural organization of the sea urchin DNA (cytosine-5)-methyltransferase gene and characterization of five alternative spliced transcripts
    • Aniello F, Villano G, Corrado M, et al. Structural organization of the sea urchin DNA (cytosine-5)-methyltransferase gene and characterization of five alternative spliced transcripts. Gene 2003;302:1-9.
    • (2003) Gene , vol.302 , pp. 1-9
    • Aniello, F.1    Villano, G.2    Corrado, M.3
  • 57
    • 80053515811 scopus 로고    scopus 로고
    • Constraints on genes shape long-term conservation of macro-synteny in metazoan genomes
    • Lv J, Havlak P, Putnam N. Constraints on genes shape long-term conservation of macro-synteny in metazoan genomes. BMC Bioinformatics 2011;12:S11.
    • (2011) BMC Bioinformatics , vol.12
    • Lv, J.1    Havlak, P.2    Putnam, N.3
  • 58
    • 68149122283 scopus 로고    scopus 로고
    • Automated identification of conserved synteny after whole-genome duplication
    • Catchen JM, Conery JS, Postlethwait JH. Automated identification of conserved synteny after whole-genome duplication. Genome Res 2009;19:1497-505.
    • (2009) Genome Res , vol.19 , pp. 1497-1505
    • Catchen, J.M.1    Conery, J.S.2    Postlethwait, J.H.3
  • 59
    • 67149129951 scopus 로고    scopus 로고
    • Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes
    • Cañestro C, Catchen JM, Rodriguez-Mari A, et al. Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes. PLoS Genet 2009;5: e1000496.
    • (2009) PLoS Genet , vol.5
    • Cañestro, C.1    Catchen, J.M.2    Rodriguez-Mari, A.3
  • 60
    • 77952679366 scopus 로고    scopus 로고
    • Ohnologs in the human genome are dosage balanced and frequently associated with disease
    • Makino T, McLysaght A. Ohnologs in the human genome are dosage balanced and frequently associated with disease. ProcNatl Acad SciUSA 2010;107:9270-4.
    • (2010) ProcNatl Acad SciUSA , vol.107 , pp. 9270-9274
    • Makino, T.1    McLysaght, A.2
  • 61
    • 79952200574 scopus 로고    scopus 로고
    • DNA methylation and genome evolution in honeybee: gene length, expression, functional enrichment covary with the evolutionary signature of DNA methylation
    • Zeng J, Yi SV. DNA methylation and genome evolution in honeybee: gene length, expression, functional enrichment covary with the evolutionary signature of DNA methylation. Genome Biol Evol 2010;2:770-80.
    • (2010) Genome Biol Evol , vol.2 , pp. 770-780
    • Zeng, J.1    Yi, S.V.2
  • 62
    • 0033769340 scopus 로고    scopus 로고
    • Amphioxus alcohol dehydrogenase is a class 3 form of single type and of structural conservation but with unique developmental expression
    • Cañestro C, Hjelmqvist L, Albalat R, et al. Amphioxus alcohol dehydrogenase is a class 3 form of single type and of structural conservation but with unique developmental expression. EurJ Biochem 2000;267:6511-8.
    • (2000) EurJ Biochem , vol.267 , pp. 6511-6518
    • Cañestro, C.1    Hjelmqvist, L.2    Albalat, R.3
  • 63
    • 0035965798 scopus 로고    scopus 로고
    • Characterization of the amphioxus presenilin gene in a high gene-density genomic region illustrates duplication during the vertebrate lineage
    • Martinez-Mir A, Cañestro C, Gonzalez-Duarte R, et al. Characterization of the amphioxus presenilin gene in a high gene-density genomic region illustrates duplication during the vertebrate lineage. Gene 2001;279:157-64.
    • (2001) Gene , vol.279 , pp. 157-164
    • Martinez-Mir, A.1    Cañestro, C.2    Gonzalez-Duarte, R.3
  • 64
    • 0035999991 scopus 로고    scopus 로고
    • CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences
    • Ponger L, Mouchiroud D. CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences. Bioinformatics 2002;18: 631-3.
    • (2002) Bioinformatics , vol.18 , pp. 631-633
    • Ponger, L.1    Mouchiroud, D.2
  • 65
    • 0018291351 scopus 로고
    • Detection of rare major genes in lipid levels
    • Ott J. Detection of rare major genes in lipid levels. Hum Genet 1979;51:79-91.
    • (1979) Hum Genet , vol.51 , pp. 79-91
    • Ott, J.1
  • 66
    • 0030840954 scopus 로고    scopus 로고
    • Cytosine methylation and the ecology of intragenomic parasites
    • Yoder JA, Walsh CP, Bestor TH. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet 1997;13: 335-40.
    • (1997) Trends Genet , vol.13 , pp. 335-340
    • Yoder, J.A.1    Walsh, C.P.2    Bestor, T.H.3
  • 67
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • Slotkin RK, Martienssen R. Transposable elements and the epigenetic regulation of the genome. NatRevGenet 2007;8: 272-85.
    • (2007) NatRevGenet , vol.8 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 68
    • 79961209289 scopus 로고    scopus 로고
    • A " mille-feuille" of silencing: epigenetic control of transposable elements
    • Rigal M, Mathieu O. A " mille-feuille" of silencing: epigenetic control of transposable elements. Biochim Biophys Acta 2011;1809:452-8.
    • (2011) Biochim Biophys Acta , vol.1809 , pp. 452-458
    • Rigal, M.1    Mathieu, O.2
  • 69
    • 0037688034 scopus 로고    scopus 로고
    • The first non-LTR retrotransposon characterised in the cephalochordate amphioxus, BfCR1, shows similarities to CR1-like elements
    • Albalat R, Permanyer J, Cañestro C, et al. The first non-LTR retrotransposon characterised in the cephalochordate amphioxus, BfCR1, shows similarities to CR1-like elements. CellMol Life Sci 2003;60:803-9.
    • (2003) CellMol Life Sci , vol.60 , pp. 803-809
    • Albalat, R.1    Permanyer, J.2    Cañestro, C.3
  • 70
    • 1542577827 scopus 로고    scopus 로고
    • The non-LTR retrotransposons in Ciona intestinalis: new insights into the evolution of chordate genomes
    • Permanyer J, Gonzalez-Duarte R, Albalat R. The non-LTR retrotransposons in Ciona intestinalis: new insights into the evolution of chordate genomes. Genome Biol 2003;4:R73.
    • (2003) Genome Biol , vol.4
    • Permanyer, J.1    Gonzalez-Duarte, R.2    Albalat, R.3
  • 71
    • 84859061219 scopus 로고    scopus 로고
    • Transposon diversity is higher in amphioxus than in vertebrates: functional and evolutionary inferences
    • (in press)
    • Cañestro C, Albalat R. Transposon diversity is higher in amphioxus than in vertebrates: functional and evolutionary inferences. Brief Funct Genomics (in press).
    • (2012) Brief Funct Genomics
    • Cañestro, C.1    Albalat, R.2
  • 72
    • 0033582623 scopus 로고    scopus 로고
    • Nonmethylated transposable elements and methylated genes in a chordate genome
    • Simmen MW, Leitgeb S, Charlton J, et al. Nonmethylated transposable elements and methylated genes in a chordate genome. Science 1999;283:1164-7.
    • (1999) Science , vol.283 , pp. 1164-1167
    • Simmen, M.W.1    Leitgeb, S.2    Charlton, J.3
  • 73
    • 33845880624 scopus 로고    scopus 로고
    • Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
    • Zilberman D, Gehring M, Tran RK, et al. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet 2007;39:61-9.
    • (2007) Nat Genet , vol.39 , pp. 61-69
    • Zilberman, D.1    Gehring, M.2    Tran, R.K.3
  • 74
    • 78649955848 scopus 로고    scopus 로고
    • The honey bee epigenomes: differential methylation of brain DNA in queens and workers
    • Lyko F, Foret S, Kucharski R, et al. The honey bee epigenomes: differential methylation of brain DNA in queens and workers. PLoS Biol 2010;8:e1000506.
    • (2010) PLoS Biol , vol.8
    • Lyko, F.1    Foret, S.2    Kucharski, R.3
  • 75
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: provocative insights from epigenomics
    • Suzuki MM, Bird A. DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet 2008;9: 465-76.
    • (2008) Nat Rev Genet , vol.9 , pp. 465-476
    • Suzuki, M.M.1    Bird, A.2
  • 76
    • 70449715419 scopus 로고    scopus 로고
    • Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes
    • Foret S, Kucharski R, Pittelkow Y, et al. Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes. BMCGenomics 2009;10:472.
    • (2009) BMCGenomics , vol.10 , pp. 472
    • Foret, S.1    Kucharski, R.2    Pittelkow, Y.3
  • 77
    • 0028940587 scopus 로고
    • Gene number, noise reduction and biological complexity
    • Bird AP. Gene number, noise reduction and biological complexity. TrendsGenet 1995;11:94-100.
    • (1995) TrendsGenet , vol.11 , pp. 94-100
    • Bird, A.P.1
  • 78
    • 84859033105 scopus 로고    scopus 로고
    • DNA methylation rebalances gene dosage after mammalian gene duplications
    • Chang AY, Liao BY. DNA methylation rebalances gene dosage after mammalian gene duplications. Mol Biol Evol 2012;29:133-44.
    • (2012) Mol Biol Evol , vol.29 , pp. 133-144
    • Chang, A.Y.1    Liao, B.Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.