-
1
-
-
84655164284
-
De novo DNA methylation: a germ cell perspective
-
Smallwood SA, Kelsey G. De novo DNA methylation: a germ cell perspective. Trends Genet 2012;28:33-42.
-
(2012)
Trends Genet
, vol.28
, pp. 33-42
-
-
Smallwood, S.A.1
Kelsey, G.2
-
2
-
-
80755187797
-
Genomic imprinting: a Mammalian epigenetic discovery model
-
Barlow DP. Genomic imprinting: a Mammalian epigenetic discovery model. Annu Rev Genet 2011;45:379-403.
-
(2011)
Annu Rev Genet
, vol.45
, pp. 379-403
-
-
Barlow, D.P.1
-
4
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
Bird A. DNA methylation patterns and epigenetic memory. Genes Dev 2002;16:6-21.
-
(2002)
Genes Dev
, vol.16
, pp. 6-21
-
-
Bird, A.1
-
5
-
-
15744401773
-
Eukaryotic cytosine methyltransferases
-
Goll MG, Bestor TH. Eukaryotic cytosine methyltransferases. Annu Rev Biochem 2005;74:481-514.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
6
-
-
0031860739
-
Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases
-
Okano M, Xie S, Li E. Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases. Nat Genet 1998;19:219-20.
-
(1998)
Nat Genet
, vol.19
, pp. 219-220
-
-
Okano, M.1
Xie, S.2
Li, E.3
-
7
-
-
0033615717
-
DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
-
Okano M, Bell DW, Haber DA, et al. DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 1999;99: 247-57.
-
(1999)
Cell
, vol.99
, pp. 247-257
-
-
Okano, M.1
Bell, D.W.2
Haber, D.A.3
-
8
-
-
0026439115
-
A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei
-
Leonhardt H, Page AW, Weier HU, et al. A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei. Cell 1992;71:865-73.
-
(1992)
Cell
, vol.71
, pp. 865-873
-
-
Leonhardt, H.1
Page, A.W.2
Weier, H.U.3
-
9
-
-
31144449613
-
Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2
-
Goll MG, Kirpekar F, Maggert KA, et al. Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science 2006;311:395-8.
-
(2006)
Science
, vol.311
, pp. 395-398
-
-
Goll, M.G.1
Kirpekar, F.2
Maggert, K.A.3
-
10
-
-
33745253953
-
Two substrates are better than one: dual specificities for Dnmt2 methyltransferases
-
Jeltsch A, Nellen W, Lyko F. Two substrates are better than one: dual specificities for Dnmt2 methyltransferases. Trends Biochem Sci 2006;31:306-8.
-
(2006)
Trends Biochem Sci
, vol.31
, pp. 306-308
-
-
Jeltsch, A.1
Nellen, W.2
Lyko, F.3
-
11
-
-
0024673303
-
CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation
-
Iguchi-Ariga SM, Schaffner W. CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation. Genes Dev 1989;3:612-9.
-
(1989)
Genes Dev
, vol.3
, pp. 612-619
-
-
Iguchi-Ariga, S.M.1
Schaffner, W.2
-
12
-
-
0025294471
-
CpG methylation inhibits proenkephalin gene expression and binding of the transcription factor AP-2
-
Comb M, Goodman HM. CpG methylation inhibits proenkephalin gene expression and binding of the transcription factor AP-2. Nucleic Acids Res 1990;18: 3975-82.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 3975-3982
-
-
Comb, M.1
Goodman, H.M.2
-
13
-
-
0034713375
-
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
-
Bell AC, Felsenfeld G. Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene. Nature 2000;405:482-5.
-
(2000)
Nature
, vol.405
, pp. 482-485
-
-
Bell, A.C.1
Felsenfeld, G.2
-
14
-
-
0037372003
-
Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals
-
Jaenisch R, Bird A. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat Genet 2003;33(Suppl):245-54.
-
(2003)
Nat Genet
, vol.33
, Issue.SUPPL.
, pp. 245-254
-
-
Jaenisch, R.1
Bird, A.2
-
15
-
-
33748298837
-
MBD family proteins: reading the epigenetic code
-
Fatemi M, Wade PA. MBD family proteins: reading the epigenetic code. JCell Sci 2006;119:3033-7.
-
(2006)
JCell Sci
, vol.119
, pp. 3033-3037
-
-
Fatemi, M.1
Wade, P.A.2
-
16
-
-
0031837109
-
Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription
-
Jones PL, Veenstra GJ, Wade PA, et al. Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription. Nat Genet 1998;19:187-91.
-
(1998)
Nat Genet
, vol.19
, pp. 187-191
-
-
Jones, P.L.1
Veenstra, G.J.2
Wade, P.A.3
-
17
-
-
0032574977
-
Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex
-
Nan X, Ng HH, Johnson CA, et al. Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex. Nature 1998;393:386-9.
-
(1998)
Nature
, vol.393
, pp. 386-389
-
-
Nan, X.1
Ng, H.H.2
Johnson, C.A.3
-
18
-
-
0035542974
-
Methyl CpG-binding proteins and transcriptional repression
-
Wade PA. Methyl CpG-binding proteins and transcriptional repression. Bioessays 2001;23:1131-7.
-
(2001)
Bioessays
, vol.23
, pp. 1131-1137
-
-
Wade, P.A.1
-
19
-
-
0030977310
-
A component of the transcriptional repressor MeCP1 shares a motif with DNA methyltransferase and HRX proteins
-
Cross SH, Meehan RR, Nan X, et al. A component of the transcriptional repressor MeCP1 shares a motif with DNA methyltransferase and HRX proteins. Nat Genet 1997;16: 256-9.
-
(1997)
Nat Genet
, vol.16
, pp. 256-259
-
-
Cross, S.H.1
Meehan, R.R.2
Nan, X.3
-
20
-
-
0033973587
-
Active repression of methylated genes by the chromosomal protein MBD1
-
Ng HH, Jeppesen P, Bird A. Active repression of methylated genes by the chromosomal protein MBD1. Mol Cell Biol 2000;20:1394-406.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 1394-1406
-
-
Ng, H.H.1
Jeppesen, P.2
Bird, A.3
-
21
-
-
0033946982
-
Mechanism of transcriptional regulation by methyl-CpG binding protein MBD1
-
Fujita N, Shimotake N, Ohki I, et al. Mechanism of transcriptional regulation by methyl-CpG binding protein MBD1. Mol Cell Biol 2000;20:5107-18.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 5107-5118
-
-
Fujita, N.1
Shimotake, N.2
Ohki, I.3
-
22
-
-
0037406067
-
The methyl-CpG binding domain and the evolving role of DNA methylation in animals
-
Hendrich B, Tweedie S. The methyl-CpG binding domain and the evolving role of DNA methylation in animals. TrendsGenet 2003;19:269-77.
-
(2003)
TrendsGenet
, vol.19
, pp. 269-277
-
-
Hendrich, B.1
Tweedie, S.2
-
23
-
-
0033601073
-
Methylation-induced repression-belts, braces, and chromatin
-
Bird AP, Wolffe AP. Methylation-induced repression-belts, braces, and chromatin. Cell 1999;99:451-4.
-
(1999)
Cell
, vol.99
, pp. 451-454
-
-
Bird, A.P.1
Wolffe, A.P.2
-
24
-
-
10644222635
-
MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex
-
Jiang CL, Jin SG, Pfeifer GP. MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex. J Biol Chem 2004;279:52456-64.
-
(2004)
J Biol Chem
, vol.279
, pp. 52456-52464
-
-
Jiang, C.L.1
Jin, S.G.2
Pfeifer, G.P.3
-
25
-
-
0037069366
-
Mbd4 inactivation increases Cright-arrowT transition mutations and promotes gastrointestinal tumor formation
-
Wong E, Yang K, Kuraguchi M, et al. Mbd4 inactivation increases Cright-arrowT transition mutations and promotes gastrointestinal tumor formation. Proc Natl Acad Sci USA 2002;99:14937-42.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 14937-14942
-
-
Wong, E.1
Yang, K.2
Kuraguchi, M.3
-
26
-
-
77957809220
-
The human proteins MBD5 and MBD6 associate with heterochromatin but they do not bind methylated DNA
-
Laget S, Joulie M, Le Masson F, et al. The human proteins MBD5 and MBD6 associate with heterochromatin but they do not bind methylated DNA. PLoSONE 2010;5:e11982.
-
(2010)
PLoSONE
, vol.5
-
-
Laget, S.1
Joulie, M.2
Le Masson, F.3
-
27
-
-
0031792779
-
Identification and characterization of a family of mammalian methyl-CpG binding proteins
-
Hendrich B, Bird A. Identification and characterization of a family of mammalian methyl-CpG binding proteins. Mol Cell Biol 1998;18:6538-47.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 6538-6547
-
-
Hendrich, B.1
Bird, A.2
-
28
-
-
0032706939
-
Vestiges of a DNA methylation system in Drosophila melanogaster?
-
Tweedie S, Ng HH, Barlow AL, et al. Vestiges of a DNA methylation system in Drosophila melanogaster? Nat Genet 1999;23:389-90.
-
(1999)
Nat Genet
, vol.23
, pp. 389-390
-
-
Tweedie, S.1
Ng, H.H.2
Barlow, A.L.3
-
29
-
-
16344371940
-
Evolutionary diversification of DNA methyltransferases in eukaryotic genomes
-
Ponger L, Li WH. Evolutionary diversification of DNA methyltransferases in eukaryotic genomes. Mol Biol Evol 2005;22:1119-28.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1119-1128
-
-
Ponger, L.1
Li, W.H.2
-
31
-
-
57649210781
-
Evolution of DNA-methylation machinery: DNA methyltransferases and methyl-DNA binding proteins in the amphioxus Branchiostoma floridae
-
Albalat R. Evolution of DNA-methylation machinery: DNA methyltransferases and methyl-DNA binding proteins in the amphioxus Branchiostoma floridae. Dev Genes Evol 2008;218:691-701.
-
(2008)
Dev Genes Evol
, vol.218
, pp. 691-701
-
-
Albalat, R.1
-
32
-
-
35649004898
-
A new synthesis in epigenetics: towards a unified function of DNA methylation from invertebrates to vertebrates
-
Mandrioli M. A new synthesis in epigenetics: towards a unified function of DNA methylation from invertebrates to vertebrates. CellMol Life Sci 2007;64:2522-4.
-
(2007)
CellMol Life Sci
, vol.64
, pp. 2522-2524
-
-
Mandrioli, M.1
-
33
-
-
13444279047
-
Evolution of dnmt-2 and mbd-2-like genes in the free-living nematodes Pristionchus pacificus. Caenorhabditis elegans and Caenorhabditis briggsae
-
Gutierrez A, Sommer RJ. Evolution of dnmt-2 and mbd-2-like genes in the free-living nematodes Pristionchus pacificus, Caenorhabditis elegans and Caenorhabditis briggsae. NucleicAcidsRes 2004;32:6388-96.
-
(2004)
NucleicAcidsRes
, vol.32
, pp. 6388-6396
-
-
Gutierrez, A.1
Sommer, R.J.2
-
34
-
-
5144229657
-
The genome sequence of silkworm, Bombyx mori
-
Mita K, Kasahara M, Sasaki S, et al. The genome sequence of silkworm, Bombyx mori. DNA Res 2004;11:27-35.
-
(2004)
DNA Res
, vol.11
, pp. 27-35
-
-
Mita, K.1
Kasahara, M.2
Sasaki, S.3
-
35
-
-
1942440409
-
Conservation of DNA methylation in dipteran insects
-
Marhold J, Rothe N, Pauli A, et al. Conservation of DNA methylation in dipteran insects. Insect Mol Biol 2004;13: 117-23.
-
(2004)
Insect Mol Biol
, vol.13
, pp. 117-123
-
-
Marhold, J.1
Rothe, N.2
Pauli, A.3
-
36
-
-
33750486851
-
Functional CpG methylation system in a social insect
-
Wang Y, Jorda M, Jones PL, et al. Functional CpG methylation system in a social insect. Science 2006;314:645-7.
-
(2006)
Science
, vol.314
, pp. 645-647
-
-
Wang, Y.1
Jorda, M.2
Jones, P.L.3
-
38
-
-
79953061203
-
Insects as innovative models for functional studies of DNA methylation
-
Lyko F, Maleszka R. Insects as innovative models for functional studies of DNA methylation. Trends Genet 2011;27: 127-31.
-
(2011)
Trends Genet
, vol.27
, pp. 127-131
-
-
Lyko, F.1
Maleszka, R.2
-
39
-
-
0031027468
-
Methylation of genomes and genes at the invertebrate-vertebrate boundary
-
Tweedie S, Charlton J, Clark V, et al. Methylation of genomes and genes at the invertebrate-vertebrate boundary. Mol Cell Biol 1997;17:1469-75.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 1469-1475
-
-
Tweedie, S.1
Charlton, J.2
Clark, V.3
-
40
-
-
32044455298
-
Large-scale structure of genomic methylation patterns
-
Rollins RA, Haghighi F, Edwards JR, et al. Large-scale structure of genomic methylation patterns. Genome Res 2006;16:157-63.
-
(2006)
Genome Res
, vol.16
, pp. 157-163
-
-
Rollins, R.A.1
Haghighi, F.2
Edwards, J.R.3
-
41
-
-
34248195006
-
CpG methylation is targeted to transcription units in an invertebrate genome
-
Suzuki MM, Kerr AR, De Sousa D, et al. CpG methylation is targeted to transcription units in an invertebrate genome. Genome Res 2007;17:625-31.
-
(2007)
Genome Res
, vol.17
, pp. 625-631
-
-
Suzuki, M.M.1
Kerr, A.R.2
De Sousa, D.3
-
42
-
-
77957920814
-
Gradual transition from mosaic to global DNA methylation patterns during deuterostome evolution
-
Okamura K, Matsumoto KA, Nakai K. Gradual transition from mosaic to global DNA methylation patterns during deuterostome evolution. BMC Bioinformatics 2010; 11(Suppl. 7):S2.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.SUPPL. 7
-
-
Okamura, K.1
Matsumoto, K.A.2
Nakai, K.3
-
43
-
-
77952734605
-
Conservation and divergence of methylation patterning in plants and animals
-
Feng S, Cokus SJ, Zhang X, et al. Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad SciUSA 2010;107:8689-94.
-
(2010)
Proc Natl Acad SciUSA
, vol.107
, pp. 8689-8694
-
-
Feng, S.1
Cokus, S.J.2
Zhang, X.3
-
44
-
-
74549184089
-
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
-
Werren JH, Richards S, Desjardins CA, etal. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science 2010;327:343-8.
-
(2010)
Science
, vol.327
, pp. 343-348
-
-
Werren, J.H.1
Richards, S.2
Desjardins, C.A.3
-
45
-
-
0024582758
-
Cytosine-specific type II DNA methyltransferases. A conserved enzyme core with variable target-recognizing domains
-
Lauster R, Trautner TA, Noyer-Weidner M. Cytosine-specific type II DNA methyltransferases. A conserved enzyme core with variable target-recognizing domains. JMol Biol 1989;206:305-12.
-
(1989)
JMol Biol
, vol.206
, pp. 305-312
-
-
Lauster, R.1
Trautner, T.A.2
Noyer-Weidner, M.3
-
46
-
-
0024604147
-
Predictive motifs derived from cytosine methyltransferases
-
Posfai J, Bhagwat AS, Posfai G, et al. Predictive motifs derived from cytosine methyltransferases. Nucleic Acids Res 1989;17:2421-35.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 2421-2435
-
-
Posfai, J.1
Bhagwat, A.S.2
Posfai, G.3
-
48
-
-
47149092240
-
cDNA cloning, expression, and characterization of methyl-CpG-binding domain type 2/3 proteins from starfish and sea urchin
-
Matsumoto M, Toraya T. cDNA cloning, expression, and characterization of methyl-CpG-binding domain type 2/3 proteins from starfish and sea urchin. Gene 2008;420: 125-34.
-
(2008)
Gene
, vol.420
, pp. 125-134
-
-
Matsumoto, M.1
Toraya, T.2
-
49
-
-
0036683055
-
Co-operation and communication between the human maintenance and de novo DNA (cytosine-5) methyltransferases
-
Kim GD, Ni J, Kelesoglu N, et al. Co-operation and communication between the human maintenance and de novo DNA (cytosine-5) methyltransferases. EMBO J 2002;21: 4183-95.
-
(2002)
EMBO J
, vol.21
, pp. 4183-4195
-
-
Kim, G.D.1
Ni, J.2
Kelesoglu, N.3
-
50
-
-
0033945861
-
DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci
-
Rountree MR, Bachman KE, Baylin SB. DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci. Nat Genet 2000;25:269-77.
-
(2000)
Nat Genet
, vol.25
, pp. 269-277
-
-
Rountree, M.R.1
Bachman, K.E.2
Baylin, S.B.3
-
51
-
-
0030770835
-
Human DNA-(cytosine-5) methyltransferase-PCNA complex as a target for p21WAF1
-
Chuang LS, Ian HI, Koh TW, et al. Human DNA-(cytosine-5) methyltransferase-PCNA complex as a target for p21WAF1. Science 1997;277:1996-2000.
-
(1997)
Science
, vol.277
, pp. 1996-2000
-
-
Chuang, L.S.1
Ian, H.I.2
Koh, T.W.3
-
52
-
-
33847155964
-
Zinc-fingers and homeoboxes 1 (ZHX1) binds DNA methyltransferase (DNMT) 3B to enhance DNMT3B-mediated transcriptional repression
-
Kim SH, Park J, Choi MC, et al. Zinc-fingers and homeoboxes 1 (ZHX1) binds DNA methyltransferase (DNMT) 3B to enhance DNMT3B-mediated transcriptional repression. Biochem Biophys Res Commun 2007;355: 318-23.
-
(2007)
Biochem Biophys Res Commun
, vol.355
, pp. 318-323
-
-
Kim, S.H.1
Park, J.2
Choi, M.C.3
-
53
-
-
0035794163
-
Stable histone deacetylase complexes distinguished by the presence of SANT domain proteins CoREST/kiaa0071 and Mta-L1
-
Humphrey GW, Wang Y, Russanova VR, et al. Stable histone deacetylase complexes distinguished by the presence of SANT domain proteins CoREST/kiaa0071 and Mta-L1. J Biol Chem 2001;276:6817-24.
-
(2001)
J Biol Chem
, vol.276
, pp. 6817-6824
-
-
Humphrey, G.W.1
Wang, Y.2
Russanova, V.R.3
-
54
-
-
0037174882
-
Two highly related p66 proteins comprise a new family of potent transcriptional repressors interacting with MBD2 and MBD3
-
Brackertz M, Boeke J, Zhang R, et al. Two highly related p66 proteins comprise a new family of potent transcriptional repressors interacting with MBD2 and MBD3. J Biol Chem 2002;277:40958-66.
-
(2002)
J Biol Chem
, vol.277
, pp. 40958-40966
-
-
Brackertz, M.1
Boeke, J.2
Zhang, R.3
-
55
-
-
78651324347
-
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
-
Szklarczyk D, Franceschini A, Kuhn M, etal. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. NucleicAcidsRes 2010; 39:D561-8.
-
(2010)
NucleicAcidsRes
, vol.39
-
-
Szklarczyk, D.1
Franceschini, A.2
Kuhn, M.3
-
56
-
-
0037413695
-
Structural organization of the sea urchin DNA (cytosine-5)-methyltransferase gene and characterization of five alternative spliced transcripts
-
Aniello F, Villano G, Corrado M, et al. Structural organization of the sea urchin DNA (cytosine-5)-methyltransferase gene and characterization of five alternative spliced transcripts. Gene 2003;302:1-9.
-
(2003)
Gene
, vol.302
, pp. 1-9
-
-
Aniello, F.1
Villano, G.2
Corrado, M.3
-
57
-
-
80053515811
-
Constraints on genes shape long-term conservation of macro-synteny in metazoan genomes
-
Lv J, Havlak P, Putnam N. Constraints on genes shape long-term conservation of macro-synteny in metazoan genomes. BMC Bioinformatics 2011;12:S11.
-
(2011)
BMC Bioinformatics
, vol.12
-
-
Lv, J.1
Havlak, P.2
Putnam, N.3
-
58
-
-
68149122283
-
Automated identification of conserved synteny after whole-genome duplication
-
Catchen JM, Conery JS, Postlethwait JH. Automated identification of conserved synteny after whole-genome duplication. Genome Res 2009;19:1497-505.
-
(2009)
Genome Res
, vol.19
, pp. 1497-1505
-
-
Catchen, J.M.1
Conery, J.S.2
Postlethwait, J.H.3
-
59
-
-
67149129951
-
Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes
-
Cañestro C, Catchen JM, Rodriguez-Mari A, et al. Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes. PLoS Genet 2009;5: e1000496.
-
(2009)
PLoS Genet
, vol.5
-
-
Cañestro, C.1
Catchen, J.M.2
Rodriguez-Mari, A.3
-
60
-
-
77952679366
-
Ohnologs in the human genome are dosage balanced and frequently associated with disease
-
Makino T, McLysaght A. Ohnologs in the human genome are dosage balanced and frequently associated with disease. ProcNatl Acad SciUSA 2010;107:9270-4.
-
(2010)
ProcNatl Acad SciUSA
, vol.107
, pp. 9270-9274
-
-
Makino, T.1
McLysaght, A.2
-
61
-
-
79952200574
-
DNA methylation and genome evolution in honeybee: gene length, expression, functional enrichment covary with the evolutionary signature of DNA methylation
-
Zeng J, Yi SV. DNA methylation and genome evolution in honeybee: gene length, expression, functional enrichment covary with the evolutionary signature of DNA methylation. Genome Biol Evol 2010;2:770-80.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 770-780
-
-
Zeng, J.1
Yi, S.V.2
-
62
-
-
0033769340
-
Amphioxus alcohol dehydrogenase is a class 3 form of single type and of structural conservation but with unique developmental expression
-
Cañestro C, Hjelmqvist L, Albalat R, et al. Amphioxus alcohol dehydrogenase is a class 3 form of single type and of structural conservation but with unique developmental expression. EurJ Biochem 2000;267:6511-8.
-
(2000)
EurJ Biochem
, vol.267
, pp. 6511-6518
-
-
Cañestro, C.1
Hjelmqvist, L.2
Albalat, R.3
-
63
-
-
0035965798
-
Characterization of the amphioxus presenilin gene in a high gene-density genomic region illustrates duplication during the vertebrate lineage
-
Martinez-Mir A, Cañestro C, Gonzalez-Duarte R, et al. Characterization of the amphioxus presenilin gene in a high gene-density genomic region illustrates duplication during the vertebrate lineage. Gene 2001;279:157-64.
-
(2001)
Gene
, vol.279
, pp. 157-164
-
-
Martinez-Mir, A.1
Cañestro, C.2
Gonzalez-Duarte, R.3
-
64
-
-
0035999991
-
CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences
-
Ponger L, Mouchiroud D. CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences. Bioinformatics 2002;18: 631-3.
-
(2002)
Bioinformatics
, vol.18
, pp. 631-633
-
-
Ponger, L.1
Mouchiroud, D.2
-
65
-
-
0018291351
-
Detection of rare major genes in lipid levels
-
Ott J. Detection of rare major genes in lipid levels. Hum Genet 1979;51:79-91.
-
(1979)
Hum Genet
, vol.51
, pp. 79-91
-
-
Ott, J.1
-
66
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
Yoder JA, Walsh CP, Bestor TH. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet 1997;13: 335-40.
-
(1997)
Trends Genet
, vol.13
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
-
67
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
Slotkin RK, Martienssen R. Transposable elements and the epigenetic regulation of the genome. NatRevGenet 2007;8: 272-85.
-
(2007)
NatRevGenet
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
68
-
-
79961209289
-
A " mille-feuille" of silencing: epigenetic control of transposable elements
-
Rigal M, Mathieu O. A " mille-feuille" of silencing: epigenetic control of transposable elements. Biochim Biophys Acta 2011;1809:452-8.
-
(2011)
Biochim Biophys Acta
, vol.1809
, pp. 452-458
-
-
Rigal, M.1
Mathieu, O.2
-
69
-
-
0037688034
-
The first non-LTR retrotransposon characterised in the cephalochordate amphioxus, BfCR1, shows similarities to CR1-like elements
-
Albalat R, Permanyer J, Cañestro C, et al. The first non-LTR retrotransposon characterised in the cephalochordate amphioxus, BfCR1, shows similarities to CR1-like elements. CellMol Life Sci 2003;60:803-9.
-
(2003)
CellMol Life Sci
, vol.60
, pp. 803-809
-
-
Albalat, R.1
Permanyer, J.2
Cañestro, C.3
-
70
-
-
1542577827
-
The non-LTR retrotransposons in Ciona intestinalis: new insights into the evolution of chordate genomes
-
Permanyer J, Gonzalez-Duarte R, Albalat R. The non-LTR retrotransposons in Ciona intestinalis: new insights into the evolution of chordate genomes. Genome Biol 2003;4:R73.
-
(2003)
Genome Biol
, vol.4
-
-
Permanyer, J.1
Gonzalez-Duarte, R.2
Albalat, R.3
-
71
-
-
84859061219
-
Transposon diversity is higher in amphioxus than in vertebrates: functional and evolutionary inferences
-
(in press)
-
Cañestro C, Albalat R. Transposon diversity is higher in amphioxus than in vertebrates: functional and evolutionary inferences. Brief Funct Genomics (in press).
-
(2012)
Brief Funct Genomics
-
-
Cañestro, C.1
Albalat, R.2
-
72
-
-
0033582623
-
Nonmethylated transposable elements and methylated genes in a chordate genome
-
Simmen MW, Leitgeb S, Charlton J, et al. Nonmethylated transposable elements and methylated genes in a chordate genome. Science 1999;283:1164-7.
-
(1999)
Science
, vol.283
, pp. 1164-1167
-
-
Simmen, M.W.1
Leitgeb, S.2
Charlton, J.3
-
73
-
-
33845880624
-
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
-
Zilberman D, Gehring M, Tran RK, et al. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet 2007;39:61-9.
-
(2007)
Nat Genet
, vol.39
, pp. 61-69
-
-
Zilberman, D.1
Gehring, M.2
Tran, R.K.3
-
74
-
-
78649955848
-
The honey bee epigenomes: differential methylation of brain DNA in queens and workers
-
Lyko F, Foret S, Kucharski R, et al. The honey bee epigenomes: differential methylation of brain DNA in queens and workers. PLoS Biol 2010;8:e1000506.
-
(2010)
PLoS Biol
, vol.8
-
-
Lyko, F.1
Foret, S.2
Kucharski, R.3
-
75
-
-
43749098985
-
DNA methylation landscapes: provocative insights from epigenomics
-
Suzuki MM, Bird A. DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet 2008;9: 465-76.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
76
-
-
70449715419
-
Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes
-
Foret S, Kucharski R, Pittelkow Y, et al. Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes. BMCGenomics 2009;10:472.
-
(2009)
BMCGenomics
, vol.10
, pp. 472
-
-
Foret, S.1
Kucharski, R.2
Pittelkow, Y.3
-
77
-
-
0028940587
-
Gene number, noise reduction and biological complexity
-
Bird AP. Gene number, noise reduction and biological complexity. TrendsGenet 1995;11:94-100.
-
(1995)
TrendsGenet
, vol.11
, pp. 94-100
-
-
Bird, A.P.1
-
78
-
-
84859033105
-
DNA methylation rebalances gene dosage after mammalian gene duplications
-
Chang AY, Liao BY. DNA methylation rebalances gene dosage after mammalian gene duplications. Mol Biol Evol 2012;29:133-44.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 133-144
-
-
Chang, A.Y.1
Liao, B.Y.2
|