메뉴 건너뛰기




Volumn 35, Issue 1, 2007, Pages

Gene loss rate: A probabilistic measure for the conservation of eukaryotic genes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DNA PROTEIN COMPLEX; DNA SEQUENCE; FUNCTIONAL GENOMICS; GENE FUNCTION; GENE LOSS; GENETIC CONSERVATION; GENETIC DATABASE; HUMAN; KNOCKOUT GENE; LETHAL GENE; NONHUMAN; PHYLOGENETIC TREE; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; RECEIVER OPERATING CHARACTERISTIC; ALGORITHM; ANIMAL; DOG; ESSENTIAL GENE; EVALUATION; GENE DELETION; GENETICS; GENOMICS; METHODOLOGY; MOLECULAR EVOLUTION; MOUSE; PHYLOGENY; PROBABILITY; PROTEIN ANALYSIS; RAT; REPRODUCIBILITY; STATISTICAL MODEL; YEAST;

EID: 33846685946     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl792     Document Type: Article
Times cited : (23)

References (34)
  • 1
    • 0035963414 scopus 로고    scopus 로고
    • Protein dispensability and rate of evolution
    • Hirsh,A.E. and Fraser,H.B. (2001) Protein dispensability and rate of evolution. Nature, 411, 1046-1049.
    • (2001) Nature , vol.411 , pp. 1046-1049
    • Hirsh, A.E.1    Fraser, H.B.2
  • 2
    • 0036078078 scopus 로고    scopus 로고
    • Essential genes are more evolutionarily conserved than are nonessential genes in bacteria
    • Jordan,K., Rogozin,I.B., Wolf,Y.I. and Koonin,E.V. (2002) Essential genes are more evolutionarily conserved than are nonessential genes in bacteria. Genome Res., 12, 962-968.
    • (2002) Genome Res. , vol.12 , pp. 962-968
    • Jordan, K.1    Rogozin, I.B.2    Wolf, Y.I.3    Koonin, E.V.4
  • 3
    • 0142124263 scopus 로고    scopus 로고
    • Gene loss, protein sequence divergence, gene dispensability, expression level and interactivity are correlated in eukaryotic evolution
    • Krylov,D.M., Wolf,Y.I., Rogozin,I.B. and Koonin,E.V. (2003) Gene loss, protein sequence divergence, gene dispensability, expression level and interactivity are correlated in eukaryotic evolution. Genome Res., 13, 2229-2235.
    • (2003) Genome Res. , vol.13 , pp. 2229-2235
    • Krylov, D.M.1    Wolf, Y.I.2    Rogozin, I.B.3    Koonin, E.V.4
  • 5
    • 0038708556 scopus 로고    scopus 로고
    • Rate of protein evolution versus fitness effect of gene deletion
    • Yang,J., Gu,Z. and Li,W.H. (2003) Rate of protein evolution versus fitness effect of gene deletion. Mol. Biol. Evol., 20, 772-774.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 772-774
    • Yang, J.1    Gu, Z.2    Li, W.H.3
  • 7
    • 0842291785 scopus 로고    scopus 로고
    • No simple dependence between protein evolution rate and the number of protein-protein interactions: Only the most prolific interactors tend to evolve slowly
    • Jordan,I., Wolf,Y. and Koonin,E. (2003) No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly. BMC Evol. Biol., 3.
    • (2003) BMC Evol. Biol. , vol.3
    • Jordan, I.1    Wolf, Y.2    Koonin, E.3
  • 9
    • 84959795073 scopus 로고
    • Phylogenetic analysis under dollo's law
    • Farris,J.S. (1977) Phylogenetic analysis under dollo's law. Syst. Zool., 26, 77-88.
    • (1977) Syst. Zool. , vol.26 , pp. 77-88
    • Farris, J.S.1
  • 11
    • 3042643735 scopus 로고    scopus 로고
    • Genome phylogeny inference based on gene contents
    • Gu,X. and Zhang,H. (2004) Genome phylogeny inference based on gene contents. Mol. Biol. Evol., 21, 1401-1408.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1401-1408
    • Gu, X.1    Zhang, H.2
  • 12
    • 23744452485 scopus 로고    scopus 로고
    • Estimating the tempo and mode of gene family evolution from comparative genomic data
    • Hahn,M., De Bie,T., Stajich,J., Nguyen,C. and Cristianini,N. (2005) Estimating the tempo and mode of gene family evolution from comparative genomic data. Genome Res., 15, 1153-1160.
    • (2005) Genome Res. , vol.15 , pp. 1153-1160
    • Hahn, M.1    De Bie, T.2    Stajich, J.3    Nguyen, C.4    Cristianini, N.5
  • 13
    • 35048850026 scopus 로고    scopus 로고
    • A case study of genome evolution: From continuous to discrete time model
    • Tiuryn,J., Rudnicki,R. and Wojtowicz,D. (2004) A case study of genome evolution: From continuous to discrete time model. Proc. Math. Found. Comput. Sci., 3153, 1-24.
    • (2004) Proc. Math. Found. Comput. Sci. , vol.3153 , pp. 1-24
    • Tiuryn, J.1    Rudnicki, R.2    Wojtowicz, D.3
  • 14
    • 33746192317 scopus 로고    scopus 로고
    • Unifying measures of gene function and evolution
    • Wolf,Y., Carmel,L. and Koonin,E. (2006) Unifying measures of gene function and evolution. Proc. Biol. Sci., 273, 1507-1515.
    • (2006) Proc. Biol. Sci. , vol.273 , pp. 1507-1515
    • Wolf, Y.1    Carmel, L.2    Koonin, E.3
  • 16
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein,J. (1981) Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol, 17, 368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 18
    • 77952882922 scopus 로고    scopus 로고
    • Comparative genomics and disorder prediction identify biologically relevant sh3 protein interactions
    • Beltrao,P. and Serrano,L. (2005) Comparative genomics and disorder prediction identify biologically relevant sh3 protein interactions. PLoS Comput. Biol., 1, e26.
    • (2005) PLoS Comput. Biol. , vol.1
    • Beltrao, P.1    Serrano, L.2
  • 19
    • 0036094818 scopus 로고    scopus 로고
    • An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks
    • Gaunt,M.W. and Miles,M.A. (2002) An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks. Mol. Biol. Evol., 19, 748-761.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 748-761
    • Gaunt, M.W.1    Miles, M.A.2
  • 21
    • 2942568227 scopus 로고    scopus 로고
    • A molecular timescale of eukaryote evolution and the rise of complex multicellular life
    • Hedges,S.B., Blair,J.E., Venturi,M.L. and Shoe,J.L. (2004) A molecular timescale of eukaryote evolution and the rise of complex multicellular life. BMC Evol. Biol., 4, 2.
    • (2004) BMC Evol. Biol. , vol.4 , pp. 2
    • Hedges, S.B.1    Blair, J.E.2    Venturi, M.L.3    Shoe, J.L.4
  • 26
    • 33644883005 scopus 로고    scopus 로고
    • A global view of pleiotropy and phenotypically derived gene function in yeast
    • doi:10.1038/msb4100004
    • Dudley,A., Janse,D., Tanay,A., Shamir,R. and Church,G. (2005) A global view of pleiotropy and phenotypically derived gene function in yeast. Mol. Syst. Biol. doi:10.1038/msb4100004.
    • (2005) Mol. Syst. Biol.
    • Dudley, A.1    Janse, D.2    Tanay, A.3    Shamir, R.4    Church, G.5
  • 27
    • 0037482108 scopus 로고    scopus 로고
    • Assessment of the reliability of protein-protein interactions and protein function prediction
    • Deng,M., Sun,F. and Chen,T. (2003) Assessment of the reliability of protein-protein interactions and protein function prediction. Pac. Symp. Biocomput., 140-151.
    • (2003) Pac. Symp. Biocomput. , pp. 140-151
    • Deng, M.1    Sun, F.2    Chen, T.3
  • 28
    • 0033551248 scopus 로고    scopus 로고
    • Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
    • Pellegrini,M., Marcotte,E., Thompson,M., Eisenberg,D. and Yeates,T. (1999) Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc. Natl Acad. Sci. USA, 96, 4285-4288.
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 4285-4288
    • Pellegrini, M.1    Marcotte, E.2    Thompson, M.3    Eisenberg, D.4    Yeates, T.5
  • 29
    • 0035046878 scopus 로고    scopus 로고
    • Lineage-specific gene expansions in bacterial and archaeal genomes
    • Jordan,I. Makarova,K., Spouge,J., Wolf,Y. and Koonin,E. (2001) Lineage-specific gene expansions in bacterial and archaeal genomes. Genome Res., 11, 555-565.
    • (2001) Genome Res. , vol.11 , pp. 555-565
    • Jordan, I.1    Makarova, K.2    Spouge, J.3    Wolf, Y.4    Koonin, E.5
  • 30
    • 0033918311 scopus 로고    scopus 로고
    • Whole-genome trees based on the occurrence of folds and orthologs: Implications for comparing genomes on different levels
    • Lin,J. and Gerstein,M. (2000) Whole-genome trees based on the occurrence of folds and orthologs: Implications for comparing genomes on different levels. Genome Res., 10, 808-818.
    • (2000) Genome Res. , vol.10 , pp. 808-818
    • Lin, J.1    Gerstein, M.2
  • 31
    • 33646182934 scopus 로고    scopus 로고
    • An integrated view of protein evolution
    • Pal,C., Papp,B. and Lercher,M. (2006) An integrated view of protein evolution. Nat. Rev. Genet., 7, 337-348.
    • (2006) Nat. Rev. Genet. , vol.7 , pp. 337-348
    • Pal, C.1    Papp, B.2    Lercher, M.3
  • 32
    • 0036141992 scopus 로고    scopus 로고
    • Relating whole-genome expression data with protein-protein interactions
    • Jansen,R., Greenbaum,D. and Gerstein,M. (2002) Relating whole-genome expression data with protein-protein interactions. Genome Res., 12, 37-46.
    • (2002) Genome Res. , vol.12 , pp. 37-46
    • Jansen, R.1    Greenbaum, D.2    Gerstein, M.3
  • 33
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
    • Remm,M., Storm,C. and Sonnhammer,E. (2001) Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol., 314, 1041-1052.
    • (2001) J. Mol. Biol. , vol.314 , pp. 1041-1052
    • Remm, M.1    Storm, C.2    Sonnhammer, E.3
  • 34
    • 0034117082 scopus 로고    scopus 로고
    • A fast algorithm for joint reconstruction of ancestral amino acid sequences
    • Pupko,T., Pe'er,I. Shamir,R. and Graur,D. (2000) A fast algorithm for joint reconstruction of ancestral amino acid sequences. Mol. Biol. Evol., 17, 890-896.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 890-896
    • Pupko, T.1    Pe'er, I.2    Shamir, R.3    Graur, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.