메뉴 건너뛰기




Volumn 60, Issue , 2009, Pages 433-453

Bias in plant gene content following different sorts of duplication: Tandem, whole-genome, segmental, or by transposition

Author keywords

Balance; Drive; Gene expansion; Retention

Indexed keywords

ARTICLE; GENE DUPLICATION; PLANT GENE;

EID: 67651039811     PISSN: 15435008     EISSN: 15452123     Source Type: Book Series    
DOI: 10.1146/annurev.arplant.043008.092122     Document Type: Article
Times cited : (735)

References (106)
  • 1
    • 34250674565 scopus 로고    scopus 로고
    • Evolution of duplicate gene expression in polyploid plants and hybrid plants
    • Adams KL. 2007. Evolution of duplicate gene expression in polyploid plants and hybrid plants. J. Hered. 98:136-41
    • (2007) J. Hered , vol.98 , pp. 136-141
    • Adams, K.L.1
  • 2
    • 14744277777 scopus 로고    scopus 로고
    • Polyploidy and genome evolution in plants
    • Adams KL, Wendel JF. 2005. Polyploidy and genome evolution in plants. Curr. Opin. Plant Biol. 8:135-41
    • (2005) Curr. Opin. Plant Biol , vol.8 , pp. 135-141
    • Adams, K.L.1    Wendel, J.F.2
  • 3
    • 40749095606 scopus 로고    scopus 로고
    • Identification and characterization of nucleotide-binding-site leucine-rich-repeat genes in the model plant Medicago truncatula
    • Ameline-Torregrosa C, Wang BB, O'Bleness MS, Deshpande S, Zhu H, et al. 2008. Identification and characterization of nucleotide-binding-site leucine-rich-repeat genes in the model plant Medicago truncatula. Plant Physiol. 146:5-21
    • (2008) Plant Physiol , vol.146 , pp. 5-21
    • Ameline-Torregrosa, C.1    Wang, B.B.2    O'Bleness, M.S.3    Deshpande, S.4    Zhu, H.5
  • 4
    • 33750858684 scopus 로고    scopus 로고
    • Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
    • Aury JM, Jaillon O, Duret L, Noel B, Jubin C, et al. 2006. Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature 444:171-78
    • (2006) Nature , vol.444 , pp. 171-178
    • Aury, J.M.1    Jaillon, O.2    Duret, L.3    Noel, B.4    Jubin, C.5
  • 5
    • 33747496376 scopus 로고    scopus 로고
    • A genome-wide survey of R gene polymorphisms in Arabidopsis
    • Bakker EG, Toomajian C, Kreitman M, Bergelson J. 2006. A genome-wide survey of R gene polymorphisms in Arabidopsis. Plant Cell 18:1803-18
    • (2006) Plant Cell , vol.18 , pp. 1803-1818
    • Bakker, E.G.1    Toomajian, C.2    Kreitman, M.3    Bergelson, J.4
  • 6
    • 33847683190 scopus 로고    scopus 로고
    • GOstat: Find statistically over-represented gene ontologies within groups of genes
    • Beissbarth T, Speed T. 2004. GOstat: Find statistically over-represented gene ontologies within groups of genes. Bioinformatics 1:1-2
    • (2004) Bioinformatics , vol.1 , pp. 1-2
    • Beissbarth, T.1    Speed, T.2
  • 7
    • 21644437476 scopus 로고    scopus 로고
    • Mechanisms of recent genome size variation in flowering plants
    • Bennetzen J, Ma J, Devos K. 2005. Mechanisms of recent genome size variation in flowering plants. Ann. Bot. 95:127-32
    • (2005) Ann. Bot , vol.95 , pp. 127-132
    • Bennetzen, J.1    Ma, J.2    Devos, K.3
  • 8
    • 0035875867 scopus 로고    scopus 로고
    • Dosage-dependent gene regulation in multicellular eukaryotes: Implications for dosage compensation, aneuploid syndromes, and quantitative traits
    • Birchler JA, Bhadra U, Bhadra MP, Auger DL. 2001. Dosage-dependent gene regulation in multicellular eukaryotes: implications for dosage compensation, aneuploid syndromes, and quantitative traits. Dev. Biol. 234:275-88
    • (2001) Dev. Biol , vol.234 , pp. 275-288
    • Birchler, J.A.1    Bhadra, U.2    Bhadra, M.P.3    Auger, D.L.4
  • 9
    • 34250632677 scopus 로고    scopus 로고
    • The gene balance hypothesis: From classical genetics to modern genomics
    • Birchler JA, Veitia RA. 2007. The gene balance hypothesis: from classical genetics to modern genomics. Plant Cell 19:395-402
    • (2007) Plant Cell , vol.19 , pp. 395-402
    • Birchler, J.A.1    Veitia, R.A.2
  • 10
    • 3142732892 scopus 로고    scopus 로고
    • Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
    • Blanc G, Wolfe KH. 2004. Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16:1679-91
    • (2004) Plant Cell , vol.16 , pp. 1679-1691
    • Blanc, G.1    Wolfe, K.H.2
  • 11
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • Bowers JE, Chapman BA, Rong J, Paterson AH. 2003. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422:433-38
    • (2003) Nature , vol.422 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 12
    • 2942620598 scopus 로고    scopus 로고
    • The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
    • Cannon SB, Mitra A, Baumgarten A, Young ND, May G. 2004. The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol. 4:10
    • (2004) BMC Plant Biol , vol.4 , pp. 10
    • Cannon, S.B.1    Mitra, A.2    Baumgarten, A.3    Young, N.D.4    May, G.5
  • 13
    • 33749532842 scopus 로고    scopus 로고
    • Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes
    • Cannon SB, Sterck L, Rombauts S, Sato S, Cheung F, et al. 2006. Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proc. Natl. Acad. Sci. USA 103:14959-64
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 14959-14964
    • Cannon, S.B.1    Sterck, L.2    Rombauts, S.3    Sato, S.4    Cheung, F.5
  • 14
    • 33646859550 scopus 로고    scopus 로고
    • Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana
    • Casneuf T, De Bodt S, Raes J, Maere S, Van de Peer Y. 2006. Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana. Genome Biol. 7:R13
    • (2006) Genome Biol , vol.7
    • Casneuf, T.1    De Bodt, S.2    Raes, J.3    Maere, S.4    Van de Peer, Y.5
  • 15
    • 23944445086 scopus 로고    scopus 로고
    • Evolution in action: Following function in duplicated floral homeotic genes
    • Causier B, Castillo R, Zhou J, Ingram R, Xue Y, et al. 2005. Evolution in action: following function in duplicated floral homeotic genes. Curr. Biol. 15:1508-12
    • (2005) Curr. Biol , vol.15 , pp. 1508-1512
    • Causier, B.1    Castillo, R.2    Zhou, J.3    Ingram, R.4    Xue, Y.5
  • 16
    • 33646470015 scopus 로고    scopus 로고
    • Chain FJ, Evans BJ. 2006. Multiple mechanisms promote the retained expression of gene duplicates in the tetraploid frog Xenopus laevis. PLoS Genet. 2:e56
    • Chain FJ, Evans BJ. 2006. Multiple mechanisms promote the retained expression of gene duplicates in the tetraploid frog Xenopus laevis. PLoS Genet. 2:e56
  • 17
    • 42549159277 scopus 로고    scopus 로고
    • Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization
    • Chain FJ, Ilieva D, Evans BJ. 2008. Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization. BMC Evol. Biol. 8:43
    • (2008) BMC Evol. Biol , vol.8 , pp. 43
    • Chain, F.J.1    Ilieva, D.2    Evans, B.J.3
  • 18
    • 33644499450 scopus 로고    scopus 로고
    • Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication
    • Chapman BA, Bowers JE, Feltus FA, Paterson AH. 2006. Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication. Proc. Natl. Acad. Sci. USA 103:2730-35
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 2730-2735
    • Chapman, B.A.1    Bowers, J.E.2    Feltus, F.A.3    Paterson, A.H.4
  • 19
    • 1042269474 scopus 로고    scopus 로고
    • A comparative phylogenetic approach for dating whole genome duplication events
    • Chapman BA, Bowers JE, Schulze SR, Paterson AH. 2004. A comparative phylogenetic approach for dating whole genome duplication events. Bioinformatics 20:180-85
    • (2004) Bioinformatics , vol.20 , pp. 180-185
    • Chapman, B.A.1    Bowers, J.E.2    Schulze, S.R.3    Paterson, A.H.4
  • 20
    • 33645389485 scopus 로고    scopus 로고
    • Mechanisms of genomic rearrangements and gene expression changes in plant polyploids
    • Chen ZJ, Ni Z. 2006. Mechanisms of genomic rearrangements and gene expression changes in plant polyploids. Bioessays 28:240-52
    • (2006) Bioessays , vol.28 , pp. 240-252
    • Chen, Z.J.1    Ni, Z.2
  • 21
    • 33646572856 scopus 로고    scopus 로고
    • What is the role of genome duplication in the evolution of complexity and diversity?
    • Crow KD, Wagner GP. 2006. What is the role of genome duplication in the evolution of complexity and diversity? Mol. Biol. Evol. 23:887-92
    • (2006) Mol. Biol. Evol , vol.23 , pp. 887-892
    • Crow, K.D.1    Wagner, G.P.2
  • 22
    • 19344363466 scopus 로고    scopus 로고
    • Preferential duplication of conserved proteins in eukaryotic genomes
    • Davis JC, Petrov DA. 2004. Preferential duplication of conserved proteins in eukaryotic genomes. PLoS Biol. 2:E55
    • (2004) PLoS Biol , vol.2
    • Davis, J.C.1    Petrov, D.A.2
  • 23
    • 24644486450 scopus 로고    scopus 로고
    • Do disparate mechanisms of duplication add similar genes to the genome?
    • Davis JC, Petrov DA. 2005. Do disparate mechanisms of duplication add similar genes to the genome? Trends Genet. 21:548-51
    • (2005) Trends Genet , vol.21 , pp. 548-551
    • Davis, J.C.1    Petrov, D.A.2
  • 24
    • 27144519666 scopus 로고    scopus 로고
    • Genome duplication and the origin of angiosperms
    • De Bodt S, Maere S, Van de Peer Y. 2005. Genome duplication and the origin of angiosperms. Trends Ecol. Evol. 20:591-97
    • (2005) Trends Ecol. Evol , vol.20 , pp. 591-597
    • De Bodt, S.1    Maere, S.2    Van de Peer, Y.3
  • 25
    • 33646880641 scopus 로고    scopus 로고
    • Promoter analysis of MADS-box genes in eudicots through phylogenetic footprinting
    • De Bodt S, Theissen G, Van de Peer Y. 2006. Promoter analysis of MADS-box genes in eudicots through phylogenetic footprinting. Mol. Biol. Evol. 23:1293-303
    • (2006) Mol. Biol. Evol , vol.23 , pp. 1293-1303
    • De Bodt, S.1    Theissen, G.2    Van de Peer, Y.3
  • 26
    • 30744464824 scopus 로고    scopus 로고
    • Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis
    • Duarte JM, Cui L, Wall PK, Zhang Q, Zhang X, et al. 2006. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol. 23:469-78
    • (2006) Mol. Biol. Evol , vol.23 , pp. 469-478
    • Duarte, J.M.1    Cui, L.2    Wall, P.K.3    Zhang, Q.4    Zhang, X.5
  • 27
    • 0000076282 scopus 로고
    • The sheltering of lethals
    • Fischer R. 1935. The sheltering of lethals. Am. Nat. 69:446-55
    • (1935) Am. Nat , vol.69 , pp. 446-455
    • Fischer, R.1
  • 30
    • 57149114784 scopus 로고    scopus 로고
    • The evolutionary position of subfunctionalization, downgraded
    • Freeling M. 2008. The evolutionary position of subfunctionalization, downgraded. Genome Dyn. 4:25-40
    • (2008) Genome Dyn , vol.4 , pp. 25-40
    • Freeling, M.1
  • 31
    • 57149120510 scopus 로고    scopus 로고
    • Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
    • Freeling M, Lyons E, Pedersen B, Alam M, Ming R, Lisch D. 2008. Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Res. 18:1924-37
    • (2008) Genome Res , vol.18 , pp. 1924-1937
    • Freeling, M.1    Lyons, E.2    Pedersen, B.3    Alam, M.4    Ming, R.5    Lisch, D.6
  • 32
    • 33745610025 scopus 로고    scopus 로고
    • Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
    • Freeling M, Thomas BC. 2006. Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. Genome Res. 16:805-14
    • (2006) Genome Res , vol.16 , pp. 805-814
    • Freeling, M.1    Thomas, B.C.2
  • 33
    • 37549054097 scopus 로고    scopus 로고
    • After a dozen years of progress the origin of angiosperms is still a great mystery
    • Frohlich MW, Chase MW. 2007. After a dozen years of progress the origin of angiosperms is still a great mystery. Nature 450:1184-89
    • (2007) Nature , vol.450 , pp. 1184-1189
    • Frohlich, M.W.1    Chase, M.W.2
  • 34
    • 35348820582 scopus 로고    scopus 로고
    • Divergence in expression between duplicated genes in Arabidopsis
    • Ganko EW, Meyers BC, Vision TJ. 2007. Divergence in expression between duplicated genes in Arabidopsis. Mol. Biol. Evol. 24:2298-309
    • (2007) Mol. Biol. Evol , vol.24 , pp. 2298-2309
    • Ganko, E.W.1    Meyers, B.C.2    Vision, T.J.3
  • 35
    • 8844244033 scopus 로고    scopus 로고
    • Very low gene duplication rate in the yeast genome
    • Gao LZ, Innan H. 2004. Very low gene duplication rate in the yeast genome. Science 306:1367-70
    • (2004) Science , vol.306 , pp. 1367-1370
    • Gao, L.Z.1    Innan, H.2
  • 36
    • 0030959648 scopus 로고    scopus 로고
    • DNA sequence evidence for the segmental allotetraploid origin of maize
    • Gaut BS, Doebley JF. 1997. DNA sequence evidence for the segmental allotetraploid origin of maize. Proc. Natl. Acad. Sci. USA 94:6809-14
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 6809-6814
    • Gaut, B.S.1    Doebley, J.F.2
  • 37
    • 0002321333 scopus 로고
    • Evolution as viewed by one geneticist
    • Goldschmidt RB. 1953. Evolution as viewed by one geneticist. Am. Sci. 40:84-98
    • (1953) Am. Sci , vol.40 , pp. 84-98
    • Goldschmidt, R.B.1
  • 38
    • 0018692402 scopus 로고
    • The spandrels of San Marco and the panglossian paradigm: A critique of the adaptionist programme
    • Gould SJ, Lewontin RC. 1979. The spandrels of San Marco and the panglossian paradigm: a critique of the adaptionist programme. Proc. R. Soc. London Ser. B 205:581-98
    • (1979) Proc. R. Soc. London Ser. B , vol.205 , pp. 581-598
    • Gould, S.J.1    Lewontin, R.C.2
  • 39
    • 19544382556 scopus 로고    scopus 로고
    • DATF: A database of Arabidopsis transcription factors
    • Guo A, He K, Liu D, Bai S, Gu X, et al. 2005. DATF: A database of Arabidopsis transcription factors. Bioinformatics 21:2568-69
    • (2005) Bioinformatics , vol.21 , pp. 2568-2569
    • Guo, A.1    He, K.2    Liu, D.3    Bai, S.4    Gu, X.5
  • 40
    • 34047134940 scopus 로고    scopus 로고
    • External factors accelerate expression divergence between duplicate genes
    • Ha M, Li WH, Chen ZJ. 2007. External factors accelerate expression divergence between duplicate genes. Trends Genet. 23:162-66
    • (2007) Trends Genet , vol.23 , pp. 162-166
    • Ha, M.1    Li, W.H.2    Chen, Z.J.3
  • 41
    • 12344335569 scopus 로고    scopus 로고
    • DAGchainer: A tool for mining segmental genome duplications and synteny
    • Haas BJ, Delcher AL, Wortman JR, Salzberg SL. 2004. DAGchainer: a tool for mining segmental genome duplications and synteny. Bioinformatics 20:3643-46
    • (2004) Bioinformatics , vol.20 , pp. 3643-3646
    • Haas, B.J.1    Delcher, A.L.2    Wortman, J.R.3    Salzberg, S.L.4
  • 42
    • 16544393690 scopus 로고    scopus 로고
    • Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis
    • Haberer G, Hindemitt T, Meyers BC, Mayer KF. 2004. Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis. Plant Physiol. 136:3009-22
    • (2004) Plant Physiol , vol.136 , pp. 3009-3022
    • Haberer, G.1    Hindemitt, T.2    Meyers, B.C.3    Mayer, K.F.4
  • 43
    • 57749085421 scopus 로고    scopus 로고
    • Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli
    • Hanada K, Zou C, Lehti-Shiu MD, Shinozaki K, Shiu SH. 2008. Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiol. 148:993-1003
    • (2008) Plant Physiol , vol.148 , pp. 993-1003
    • Hanada, K.1    Zou, C.2    Lehti-Shiu, M.D.3    Shinozaki, K.4    Shiu, S.H.5
  • 44
    • 67651047696 scopus 로고    scopus 로고
    • Deleted in proof
    • Deleted in proof
  • 45
    • 15544389841 scopus 로고    scopus 로고
    • Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
    • He X, Zhang J. 2005. Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics 169:1157-64
    • (2005) Genetics , vol.169 , pp. 1157-1164
    • He, X.1    Zhang, J.2
  • 46
    • 33747161960 scopus 로고    scopus 로고
    • Transcriptome shock after interspecific hybridization in Senecio is ameliorated by genome duplication
    • Hegarty M, Barker G, Wilson I, Abbott R, Edwards S. 2006. Transcriptome shock after interspecific hybridization in Senecio is ameliorated by genome duplication. Curr. Biol. 16:1652-59
    • (2006) Curr. Biol , vol.16 , pp. 1652-1659
    • Hegarty, M.1    Barker, G.2    Wilson, I.3    Abbott, R.4    Edwards, S.5
  • 47
    • 43449099736 scopus 로고    scopus 로고
    • Genomic clues to the evolutionry sucess of polyploid plants
    • Hegerty MJ, Hiscock MJ. 2008. Genomic clues to the evolutionry sucess of polyploid plants. Curr. Biol. 19:R435-44
    • (2008) Curr. Biol , vol.19
    • Hegerty, M.J.1    Hiscock, M.J.2
  • 48
    • 35848941492 scopus 로고    scopus 로고
    • Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana
    • Hollister JD, Gaut BS. 2007. Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana. Mol. Biol. Evol. 24:2515-24
    • (2007) Mol. Biol. Evol , vol.24 , pp. 2515-2524
    • Hollister, J.D.1    Gaut, B.S.2
  • 49
    • 33846857991 scopus 로고    scopus 로고
    • Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
    • Itoh T, Tanaka T, Barrero R, Yamasaki C, Fujii Y, et al. 2007. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res. 17:175-83
    • (2007) Genome Res , vol.17 , pp. 175-183
    • Itoh, T.1    Tanaka, T.2    Barrero, R.3    Yamasaki, C.4    Fujii, Y.5
  • 50
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, et al. 2007. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449:463-67
    • (2007) Nature , vol.449 , pp. 463-467
    • Jaillon, O.1    Aury, J.M.2    Noel, B.3    Policriti, A.4    Clepet, C.5
  • 51
    • 33751100626 scopus 로고    scopus 로고
    • The plant immune system
    • Jones JD, Dangl JL. 2006. The plant immune system. Nature 444:323-29
    • (2006) Nature , vol.444 , pp. 323-329
    • Jones, J.D.1    Dangl, J.L.2
  • 52
    • 46649113144 scopus 로고    scopus 로고
    • A role for gene duplication and natural variation of gene expression in the evolution of metabolism
    • Kliebenstein DJ. 2008. A role for gene duplication and natural variation of gene expression in the evolution of metabolism. PLoS ONE 3:e1838
    • (2008) PLoS ONE , vol.3
    • Kliebenstein, D.J.1
  • 53
    • 1542338594 scopus 로고    scopus 로고
    • Genomic duplication, fractionation and the origin of regulatory novelty
    • Langham RJ, Walsh J, Dunn M, Ko C, Goff SA, Freeling M. 2004. Genomic duplication, fractionation and the origin of regulatory novelty. Genetics 166:935-45
    • (2004) Genetics , vol.166 , pp. 935-945
    • Langham, R.J.1    Walsh, J.2    Dunn, M.3    Ko, C.4    Goff, S.A.5    Freeling, M.6
  • 54
    • 1242316239 scopus 로고    scopus 로고
    • Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance genes
    • Leister D. 2004. Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance genes. Trends Genet. 20:116-22
    • (2004) Trends Genet , vol.20 , pp. 116-122
    • Leister, D.1
  • 56
    • 42649143831 scopus 로고    scopus 로고
    • Evolutionary constraints imposed by gene dosage balance
    • Liang H, Fernandez A. 2008. Evolutionary constraints imposed by gene dosage balance. Front. Biosci. 13:4373-78
    • (2008) Front. Biosci , vol.13 , pp. 4373-4378
    • Liang, H.1    Fernandez, A.2
  • 57
    • 34848855463 scopus 로고    scopus 로고
    • Expression partitioning between genes duplicated by polyploidy under abiotic stress and during organ development
    • Liu Z, Adams KL. 2007. Expression partitioning between genes duplicated by polyploidy under abiotic stress and during organ development. Curr. Biol. 17:1669-74
    • (2007) Curr. Biol , vol.17 , pp. 1669-1674
    • Liu, Z.1    Adams, K.L.2
  • 58
    • 0037047587 scopus 로고    scopus 로고
    • Genomics, gene duplication and evolution
    • Lynch M. 2002. Genomics, gene duplication and evolution. Science 297:945-47
    • (2002) Science , vol.297 , pp. 945-947
    • Lynch, M.1
  • 59
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M, Conery JS. 2000. The evolutionary fate and consequences of duplicate genes. Science 290:1151-55
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 60
    • 0033972072 scopus 로고    scopus 로고
    • The probability of duplicate gene preservation by subfunctionalization
    • Lynch M, Force A. 2000. The probability of duplicate gene preservation by subfunctionalization. Genetics 154:459-73
    • (2000) Genetics , vol.154 , pp. 459-473
    • Lynch, M.1    Force, A.2
  • 61
    • 38949151064 scopus 로고    scopus 로고
    • How to usefully compare homologous plant genes and chromosomes as DNA sequence
    • Lyons E, Freeling M. 2008. How to usefully compare homologous plant genes and chromosomes as DNA sequence. Plant J. 53:661-73
    • (2008) Plant J , vol.53 , pp. 661-673
    • Lyons, E.1    Freeling, M.2
  • 63
    • 0001805041 scopus 로고
    • What was the Evolutionary Synthesis?
    • Mayr E. 1993. What was the Evolutionary Synthesis? Trends Ecol. Evol. 8:31-4
    • (1993) Trends Ecol. Evol , vol.8 , pp. 31-34
    • Mayr, E.1
  • 64
    • 38649142412 scopus 로고    scopus 로고
    • McCarthy T, Bergman A. 2007. The limits of subfunctionalization. BMC Evol. Bioinformatics 7:1-14
    • McCarthy T, Bergman A. 2007. The limits of subfunctionalization. BMC Evol. Bioinformatics 7:1-14
  • 65
    • 0021715393 scopus 로고
    • The significance of responses of the genome to challenge
    • McClintock B. 1984. The significance of responses of the genome to challenge. Science 226:792-801
    • (1984) Science , vol.226 , pp. 792-801
    • McClintock, B.1
  • 66
    • 42949157236 scopus 로고    scopus 로고
    • The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
    • Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, et al. 2008. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 452:991-96
    • (2008) Nature , vol.452 , pp. 991-996
    • Ming, R.1    Hou, S.2    Feng, Y.3    Yu, Q.4    Dionne-Laporte, A.5
  • 67
    • 35348886029 scopus 로고    scopus 로고
    • Concise review: Role and function of the Ubiquitin-proteasome system in mammalian stem and progenitor cells
    • Naujokat C, Saric T. 2007. Concise review: role and function of the Ubiquitin-proteasome system in mammalian stem and progenitor cells. Stem Cells 25:2408-18
    • (2007) Stem Cells , vol.25 , pp. 2408-2418
    • Naujokat, C.1    Saric, T.2
  • 68
    • 0025876060 scopus 로고
    • Evolution of gene position: Chromosomal arrangement and sequence comparison of the Drosophila melanogaster and Drosophila virilis sina and Rh4 genes
    • Neufeld TP, Carthew RW, Rubin GM. 1991. Evolution of gene position: chromosomal arrangement and sequence comparison of the Drosophila melanogaster and Drosophila virilis sina and Rh4 genes. Proc. Natl. Acad. Sci. USA 88:10203-7
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 10203-10207
    • Neufeld, T.P.1    Carthew, R.W.2    Rubin, G.M.3
  • 71
    • 0034500239 scopus 로고    scopus 로고
    • Polyploid incidence and evolution
    • Otto SP, Whitton J. 2000. Polyploid incidence and evolution. Annu. Rev. Genet. 34:401-37
    • (2000) Annu. Rev. Genet , vol.34 , pp. 401-437
    • Otto, S.P.1    Whitton, J.2
  • 72
    • 0037472928 scopus 로고    scopus 로고
    • Genomic function: Rate of evolution and gene dispensability
    • Pal C, Papp B, Hurst LD. 2003. Genomic function: rate of evolution and gene dispensability. Nature 421:496-98
    • (2003) Nature , vol.421 , pp. 496-498
    • Pal, C.1    Papp, B.2    Hurst, L.D.3
  • 73
    • 0038157152 scopus 로고    scopus 로고
    • Dosage sensitivity and the evolution of gene families in yeast
    • Papp B, Pal C, Hurst LD. 2003. Dosage sensitivity and the evolution of gene families in yeast. Nature 424:194-97
    • (2003) Nature , vol.424 , pp. 194-197
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 74
    • 3042836334 scopus 로고    scopus 로고
    • Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
    • Paterson AH, Bowers JE, Chapman BA. 2004. Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc. Natl. Acad. Sci. USA 101:9903-8
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 9903-9908
    • Paterson, A.H.1    Bowers, J.E.2    Chapman, B.A.3
  • 75
    • 0000340016 scopus 로고
    • Duplicate genes in maize
    • Rhoades MM. 1951. Duplicate genes in maize. Am. Nat. 85:105-10
    • (1951) Am. Nat , vol.85 , pp. 105-110
    • Rhoades, M.M.1
  • 76
    • 33749357831 scopus 로고    scopus 로고
    • Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice
    • Rizzon C, Ponger L, Gaut BS. 2006. Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. PLoS Comput. Biol. 2:e115
    • (2006) PLoS Comput. Biol , vol.2
    • Rizzon, C.1    Ponger, L.2    Gaut, B.S.3
  • 77
    • 16344367626 scopus 로고    scopus 로고
    • Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)
    • Salmon A, Ainouche ML, Wendel JF. 2005. Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae). Mol. Ecol. 14:1163-75
    • (2005) Mol. Ecol , vol.14 , pp. 1163-1175
    • Salmon, A.1    Ainouche, M.L.2    Wendel, J.F.3
  • 78
    • 33645023614 scopus 로고    scopus 로고
    • Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
    • Scannell DR, Byrne KP, Gordon JL, Wong S, Wolfe KH. 2006. Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 440:341-45
    • (2006) Nature , vol.440 , pp. 341-345
    • Scannell, D.R.1    Byrne, K.P.2    Gordon, J.L.3    Wong, S.4    Wolfe, K.H.5
  • 79
  • 80
    • 4444363053 scopus 로고    scopus 로고
    • Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome
    • Seoighe C, Gehring C. 2004. Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome. Trends Genet. 20:461-64
    • (2004) Trends Genet , vol.20 , pp. 461-464
    • Seoighe, C.1    Gehring, C.2
  • 81
    • 0032879798 scopus 로고    scopus 로고
    • Yeast genome evolution in the postgenome era
    • Seoighe C, Wolfe KH. 1999. Yeast genome evolution in the postgenome era. Curr. Opin. Microbiol. 2:548-54
    • (1999) Curr. Opin. Microbiol , vol.2 , pp. 548-554
    • Seoighe, C.1    Wolfe, K.H.2
  • 82
    • 2442591728 scopus 로고    scopus 로고
    • Comparative analysis of the receptor-like kinase family in Arabidopsis and rice
    • Shiu SH, Karlowski WM, Pan R, Tzeng YH, Mayer KF, Li WH. 2004. Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. Plant Cell 16:1220-34
    • (2004) Plant Cell , vol.16 , pp. 1220-1234
    • Shiu, S.H.1    Karlowski, W.M.2    Pan, R.3    Tzeng, Y.H.4    Mayer, K.F.5    Li, W.H.6
  • 83
    • 0029162810 scopus 로고
    • Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution
    • Song K, Lu P, Tang K, Osborn TC. 1995. Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc. Natl. Acad. Sci. USA 92:7719-23
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 7719-7723
    • Song, K.1    Lu, P.2    Tang, K.3    Osborn, T.C.4
  • 84
    • 0035933536 scopus 로고    scopus 로고
    • Common and contrasting themes of plant and animal diseases
    • Staskawicz BJ, Mudgett MB, Dangl JL, Galan JE. 2001. Common and contrasting themes of plant and animal diseases. Science 292:2285-89
    • (2001) Science , vol.292 , pp. 2285-2289
    • Staskawicz, B.J.1    Mudgett, M.B.2    Dangl, J.L.3    Galan, J.E.4
  • 85
    • 5144234363 scopus 로고    scopus 로고
    • Swigonova Z, Lai J, Ma J, Ramakrishna W, Llaca V, et al. 2004. Close split of sorghum and maize genome progenitors. genome res. 14:1916-23
    • Swigonova Z, Lai J, Ma J, Ramakrishna W, Llaca V, et al. 2004. Close split of sorghum and maize genome progenitors. genome res. 14:1916-23
  • 87
    • 4644358610 scopus 로고    scopus 로고
    • Genes encoding subunits of stable complexes are clustered on the yeast chromosomes: An interpretation from a dosage balance perspective
    • Teichmann S, Veitia R. 2004. Genes encoding subunits of stable complexes are clustered on the yeast chromosomes: an interpretation from a dosage balance perspective. Genetics 167:2121-25
    • (2004) Genetics , vol.167 , pp. 2121-2125
    • Teichmann, S.1    Veitia, R.2
  • 88
    • 33745617700 scopus 로고    scopus 로고
    • Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
    • Thomas BC, Pedersen B, Freeling M. 2006. Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. Genome Res. 16:934-46
    • (2006) Genome Res , vol.16 , pp. 934-946
    • Thomas, B.C.1    Pedersen, B.2    Freeling, M.3
  • 89
    • 18844408081 scopus 로고    scopus 로고
    • Evidence for an ancient whole-genome duplication event in rice and other cereals
    • Tian C, Xiong Y, Liu T, Sun S, Chan L, Chen M. 2005. Evidence for an ancient whole-genome duplication event in rice and other cereals. Yi Chuan Xue Bao 32:519-27
    • (2005) Yi Chuan Xue Bao , vol.32 , pp. 519-527
    • Tian, C.1    Xiong, Y.2    Liu, T.3    Sun, S.4    Chan, L.5    Chen, M.6
  • 90
    • 33748760611 scopus 로고    scopus 로고
    • The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    • Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, et al. 2006. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313:1596-604
    • (2006) Science , vol.313 , pp. 1596-1604
    • Tuskan, G.A.1    Difazio, S.2    Jansson, S.3    Bohlmann, J.4    Grigoriev, I.5
  • 91
    • 41249098849 scopus 로고    scopus 로고
    • A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
    • Valesco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, et al. 2007. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE 2:e1326
    • (2007) PLoS ONE , vol.2
    • Valesco, R.1    Zharkikh, A.2    Troggio, M.3    Cartwright, D.A.4    Cestaro, A.5
  • 92
    • 0036008552 scopus 로고    scopus 로고
    • Exploring the etiology of haplo insufficiency
    • Veitia RA. 2002. Exploring the etiology of haplo insufficiency. Bioessays 24:175-84
    • (2002) Bioessays , vol.24 , pp. 175-184
    • Veitia, R.A.1
  • 93
    • 5144234337 scopus 로고    scopus 로고
    • Gene dosage balance in cellular pathways: Implications for dominance and gene duplicability
    • Veitia RA. 2004. Gene dosage balance in cellular pathways: implications for dominance and gene duplicability. Genetics 104:569-74
    • (2004) Genetics , vol.104 , pp. 569-574
    • Veitia, R.A.1
  • 94
    • 48949115115 scopus 로고    scopus 로고
    • Cellular reactions to gene dosage imbalance: Genomic, transcriptomic and proteomic effects
    • Veitia RA, Bottani S, Birchler JA. 2008. Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects. Trends Genet. 24:390-97
    • (2008) Trends Genet , vol.24 , pp. 390-397
    • Veitia, R.A.1    Bottani, S.2    Birchler, J.A.3
  • 95
    • 41649110614 scopus 로고    scopus 로고
    • Gene duplications, robustness and evolutionary innovations
    • Wagner A. 2008. Gene duplications, robustness and evolutionary innovations. BioEssays 30:367-73
    • (2008) BioEssays , vol.30 , pp. 367-373
    • Wagner, A.1
  • 96
    • 33644762929 scopus 로고    scopus 로고
    • Genomewide nonadditive gene regulation in Arabidopsis allotetraploids
    • Wang J, Tian L, Lee HS, Wei NE, Jiang H, et al. 2006. Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics 172:507-17
    • (2006) Genetics , vol.172 , pp. 507-517
    • Wang, J.1    Tian, L.2    Lee, H.S.3    Wei, N.E.4    Jiang, H.5
  • 97
    • 37249045857 scopus 로고    scopus 로고
    • Extensive concerted evolution of rice paralogs and the road to regaining independence
    • Wang X, Tang H, Bowers JE, Feltus FA, Paterson AH. 2007. Extensive concerted evolution of rice paralogs and the road to regaining independence. Genetics 177:1753-63
    • (2007) Genetics , vol.177 , pp. 1753-1763
    • Wang, X.1    Tang, H.2    Bowers, J.E.3    Feltus, F.A.4    Paterson, A.H.5
  • 98
    • 4143058332 scopus 로고    scopus 로고
    • Subfunctionalization: How often does it occur? How long does it take?
    • Ward R, Durrett R. 2004. Subfunctionalization: How often does it occur? How long does it take? Theor. Popul. Biol. 66:93-100
    • (2004) Theor. Popul. Biol , vol.66 , pp. 93-100
    • Ward, R.1    Durrett, R.2
  • 99
    • 34548527597 scopus 로고    scopus 로고
    • Comparative genomics using Fugu reveals insights into regulatory subfunctionalization
    • Woolfe A, Elgar G. 2007. Comparative genomics using Fugu reveals insights into regulatory subfunctionalization. Genome Biol. 8:R53
    • (2007) Genome Biol , vol.8
    • Woolfe, A.1    Elgar, G.2
  • 100
    • 44649166423 scopus 로고    scopus 로고
    • The preferential retention of starch synthesis genes reveals the impact of whole-genome duplication on grass evolution
    • Wu Y, Zhu Z, Ma L, Chen M. 2008. The preferential retention of starch synthesis genes reveals the impact of whole-genome duplication on grass evolution. Mol. Biol. Evol. 25:1003-6
    • (2008) Mol. Biol. Evol , vol.25 , pp. 1003-1006
    • Wu, Y.1    Zhu, Z.2    Ma, L.3    Chen, M.4
  • 102
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp indica)
    • Yu J, Hu S, Wang J, Wong GK, Li S. 2002. A draft sequence of the rice genome (Oryza sativa L. ssp indica). Science 296:79-92
    • (2002) Science , vol.296 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3    Wong, G.K.4    Li, S.5
  • 103
    • 20144366003 scopus 로고    scopus 로고
    • The genomes of Oryza sativa: A history of duplications
    • Yu J, Wang J, Lin W, Li S, Li H, et al. 2005. The genomes of Oryza sativa: a history of duplications. PLoS Biol. 3:e38
    • (2005) PLoS Biol , vol.3
    • Yu, J.1    Wang, J.2    Lin, W.3    Li, S.4    Li, H.5
  • 104
    • 0036726239 scopus 로고    scopus 로고
    • Patterns of nucleotide substitution among simultaneously duplicate gene pairs in Arabidopsis thaliana
    • Zhang L, Vision TJ, Gaut BS. 2002. Patterns of nucleotide substitution among simultaneously duplicate gene pairs in Arabidopsis thaliana. Mol. Biol. Evol. 19:1464-73
    • (2002) Mol. Biol. Evol , vol.19 , pp. 1464-1473
    • Zhang, L.1    Vision, T.J.2    Gaut, B.S.3
  • 105
    • 26944438711 scopus 로고    scopus 로고
    • Computational identification of 69 retroposons in Arabidopsis
    • Zhang Y, Wu Y, Liu Y, Han B. 2005. Computational identification of 69 retroposons in Arabidopsis. Plant Physiol. 138:935-48
    • (2005) Plant Physiol , vol.138 , pp. 935-948
    • Zhang, Y.1    Wu, Y.2    Liu, Y.3    Han, B.4
  • 106
    • 50649097020 scopus 로고    scopus 로고
    • On the origin of new genes in Drosophila
    • Zhou Q, Zhang G, Zhang Y, Xu S, Zhao R, et al. 2008. On the origin of new genes in Drosophila. Genome Res. 128:1446-55
    • (2008) Genome Res , vol.128 , pp. 1446-1455
    • Zhou, Q.1    Zhang, G.2    Zhang, Y.3    Xu, S.4    Zhao, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.