Dna interference: DNA-induced gene silencing in the appendicularian oikopleura dioica

Proceedings of the Royal Society B: Biological Sciences

Volumn 282, Issue 1807, 2015, Pages

  Omotezako, Tatsuya ^a   Onuma, Takeshi A ^a   Nishida, Hiroki ^a  

^a OSAKA UNIVERSITY   (Japan)

Author keywords

Brachyury; Chordate; DNA interference; Oikopleura dioica; Post transcriptional gene silencing; Transcriptional gene silencing

Indexed keywords

ENZYME ACTIVITY; GENE EXPRESSION; METAZOAN; NUCLEIC ACID; PLASMID; POLYMERASE CHAIN REACTION;

CILIOPHORA; EUKARYOTA; METAZOA; OIKOPLEURA DIOICA;

ACETYLCHOLINESTERASE; DNA; FETOPROTEIN; MESSENGER RNA; T BOX TRANSCRIPTION FACTOR;

ABNORMALITIES; ANIMAL; EMBRYOLOGY; ENZYMOLOGY; GENE SILENCING; GENETICS; INTRON; METABOLISM; MOLECULAR GENETICS; MUSCLE; SENSE ORGAN; TAIL; UROCHORDATA;

ACETYLCHOLINESTERASE; ANIMALS; DNA; FETAL PROTEINS; GENE SILENCING; INTRONS; MOLECULAR SEQUENCE DATA; MUSCLES; RNA, MESSENGER; SENSE ORGANS; T-BOX DOMAIN PROTEINS; TAIL; UROCHORDATA;

EID: 84928902042     PISSN: 09628452     EISSN: 14712954     Source Type: Journal    
DOI: 10.1098/rspb.2015.0435     Document Type: Article

References (18)

1. van der Krol AR, Mur LA, Beld M, Mol JN, Stuitje AR. 1990 Flavonoid genes in petunia: addition of limited number of gene copies may lead to a suppression of gene expression. Plant Cell 2, 291–299. (doi:10.1105/tpc.2.4.291)
2. Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. 1998 Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391, 806–811. (doi:10.1038/35888)
3. Hannon GJ. 2002 RNA interference. Nature 418, 244–251. (doi:10.1038/418244a)
4. Cogoni C, Macino G. 1999 Homology-dependent gene silencing in plants and fungi: a number of variations on the same theme. Curr. Opin. Microbiol 2, 657–662. (doi:10.1016/S1369-5274(99)00041-7)
5. Wianny F, Zernicka-Goetz M. 2000 Specific interference with gene function by double-stranded RNA in early mouse development. Nat. Cell Biol 2, 70–75. (doi:10.1038/35000016)
6. Voinnet O, Vain P, Angell S, Baulcombe DC. 1998 Systemic spread of sequence-specific transgene RNA degradation in plants is initiated by localized introduction of ectopic promoterless DNA. Cell 95, 177–187. (doi:10.1016/S0092-8674(00)81749-3)
7. Kawai-Toyooka H, Kuramoto C, Orui K, Motoyama K, Kikuchi K, Kanegae T, Wada M. 2004 DNA interference: a simple and efficient gene-silencing system for high-throughput functional analysis in the Fern Adiantum. Plant Cell Physiol. 45, 1648–1657. (doi:10.1093/pcp/pch186)
8. Tsuboi H, Sutoh K, Wada M. 2012 Epigenetic memory of DNAi associated with cytosine methylation and histone modification in fern. Plant Signal. Behav. 11, 1477–1483. (doi:10.4161/psb.21974)
9. Ruiz F, Vayssie´ L, Klotz C, Sperling L, Madeddu L. 1998 Homology-dependent gene silencing in Paramecium. Mol. Biol. Cell 9, 931–943. (doi:10.1091/mbc.9.4.931)
10. Swarts DC et al. 2014 DNA-guided DNA interference by a prokaryotic Argonaute. Nature 507, 258–261. (doi:10.1038/nature12971)
11. Pal-Bhadra M, Bhadra U, Birchler JA. 1999 Cosuppression of nonhomologous transgenes in Drosophila involves mutually related endogenous sequences. Cell 99, 35–46. (doi:10.1016/S0092-8674(00)80060-4)
12. Ketting RF, Plasterk RH. 2000 A genetic link between co-suppression and RNA interference in C. elegans. Nature 404, 296–298. (doi:10.1038/35005113)
13. Omotezako T, Nishino A, Onuma TA, Nishida H. 2013 RNA interference in the appendicularian Oikopleura dioica reveals the function of the Brachyury gene. Dev. Genes Evol. 223, 261–267. (doi:10.1007/s00427-013-0438-8)
14. Ganot P, Kallesøe T, Reinhardt R, Chourrout D, Thompson EM. 2004 Spliced-leader RNA trans splicing in a chordate, Oikopleura dioica, with a compact genome. Mol. Cell Biol. 24, 7795–7805. (doi:10.1128/MCB.24.17.7795-7805.2004)
15. Bassham S, Postlethwait J. 2000 Brachyury (T) expression in embryos of larvacean urochordate, Oikoleura dioica, and the ancestral role of T. Dev. Biol. 220, 322–332. (doi:10.1006/dbio.2000.9647)
16. Kugler JE, Karner P, Bouquet JM, Jiang D, Di Gregorio A. 2011 Evolutionary changes in the notochord genetic toolkit: a comparative analysis of notochord genes in the ascidian Ciona and the larvacean Oikopleura. BMC Evol. Biol. 11, 21. (doi:10.1186/1471-2148-11-21)
17. Danks G et al. 2012 OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica. Nucleic Acids Res. 41, D845–D853. (doi:10.1093/nar/gks1159)
18. Ganot P, Bouquet JM, Kallesøe T, Thompson EM. 2007 The Oikopleura coenocyst, a unique chordate germ cell permitting rapid, extensive modulation of oocyte production. Dev. Biol. 302, 591–600. (doi:10.1016/j.ydbio.2006.10.021)