-
1
-
-
0036890285
-
Binding affinity and specificity from computational studies
-
DOI 10.2174/1385272023373491
-
Lazaridis, T. Binding Affinity and Specificity from Computational Studies Curr. Org. Chem. 2002, 6, 1319-1332 (Pubitemid 35331199)
-
(2002)
Current Organic Chemistry
, vol.6
, Issue.14
, pp. 1319-1332
-
-
Lazaridis, T.1
-
2
-
-
54849423239
-
Predicting Selectivity and Druggability in Drug Discovery
-
In; Wheeler, R. A. Spellmeyer, D. C. Elsevier: Amsterdam, Vol. Chapter 2
-
Cheng, A. C. Predicting Selectivity and Druggability in Drug Discovery. In Annual Reports in Computational Chemistry; Wheeler, R. A.; Spellmeyer, D. C., Eds.; Elsevier: Amsterdam, 2008; Vol. 4, Chapter 2, pp 23-37.
-
(2008)
Annual Reports in Computational Chemistry
, vol.4
, pp. 23-37
-
-
Cheng, A.C.1
-
3
-
-
33644853216
-
Computational Approaches to Model Ligand Selectivity in Drug Design
-
Ortiz, A. R.; Gomez-Puertas, P.; Leo-Macias, A.; Lopez-Romero, P.; Lopez-Vinas, E.; Morreale, A.; Murcia, M.; Wang, K. Computational Approaches to Model Ligand Selectivity in Drug Design Curr. Top. Med. Chem. 2006, 6, 41-55
-
(2006)
Curr. Top. Med. Chem.
, vol.6
, pp. 41-55
-
-
Ortiz, A.R.1
Gomez-Puertas, P.2
Leo-Macias, A.3
Lopez-Romero, P.4
Lopez-Vinas, E.5
Morreale, A.6
Murcia, M.7
Wang, K.8
-
4
-
-
79952171625
-
Probing the Links between in Vitro Potency, ADMET and Physicochemical Parameters
-
Gleeson, M. P.; Hersey, A.; Montanari, D.; Overington, J. Probing the Links between in Vitro Potency, ADMET and Physicochemical Parameters Nat. Rev. Drug Discovery 2011, 10, 197-208
-
(2011)
Nat. Rev. Drug Discovery
, vol.10
, pp. 197-208
-
-
Gleeson, M.P.1
Hersey, A.2
Montanari, D.3
Overington, J.4
-
5
-
-
0037194634
-
+ channel blockers
-
DOI 10.1021/jm0208875
-
Cavalli, A.; Poluzzi, E.; De Ponti, F.; Recanatini, M. Toward a Pharmacophore for Drugs Inducing the Long QT Syndrome: Insights from a CoMFA Study of HERG K+ Channel Blockers J. Med. Chem. 2002, 45, 3844-3853 (Pubitemid 35024289)
-
(2002)
Journal of Medicinal Chemistry
, vol.45
, Issue.18
, pp. 3844-3853
-
-
Cavalli, A.1
Poluzzi, E.2
De Ponti, F.3
Recanatini, M.4
-
6
-
-
33644967111
-
New Insights about HERG Blockade Obtained from Protein Modeling, Potential Energy Mapping, and Docking Studies
-
Farid, R.; Day, T.; Friesner, R. A.; Pearlstein, R. A. New Insights about HERG Blockade Obtained from Protein Modeling, Potential Energy Mapping, and Docking Studies Bioorg. Med. Chem. 2006, 14, 3160-3173
-
(2006)
Bioorg. Med. Chem.
, vol.14
, pp. 3160-3173
-
-
Farid, R.1
Day, T.2
Friesner, R.A.3
Pearlstein, R.A.4
-
7
-
-
17444411955
-
Cytochrome P450 in silico: An integrative modeling approach
-
DOI 10.1021/jm040180d
-
de Graaf, C.; Vermeulen, N. P. E; Feenstra, K. A. Cytochrome P450 in Silico: An Integrative Modeling Approach J. Med. Chem. 2005, 48, 2725-2755 (Pubitemid 40548088)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.8
, pp. 2725-2755
-
-
De Graaf, C.1
Vermeulen, N.P.E.2
Feenstra, K.A.3
-
8
-
-
29244447987
-
The utility of in vitro cytochrome P450 inhibition data in the prediction of drug-drug interactions
-
DOI 10.1124/jpet.105.093229
-
Obach, R. S.; Walsky, R. L.; Venkatakrishnan, K.; Gaman, E. A.; Houston, J. B.; Tremaine, L. M. The Utility of in Vitro Cytochrome P450 Inhibition Data in the Prediction of Drug-Drug Interactions J. Pharmacol. Exp. Ther. 2006, 316, 336-348 (Pubitemid 41832613)
-
(2006)
Journal of Pharmacology and Experimental Therapeutics
, vol.316
, Issue.1
, pp. 336-348
-
-
Obach, R.S.1
Walsky, R.L.2
Venkatakrishnan, K.3
Gaman, E.A.4
Houston, J.B.5
Tremaine, L.M.6
-
9
-
-
1642323740
-
Protein Kinase Inhibitors: Insights into Drug Design from Structure
-
DOI 10.1126/science.1095920
-
Noble, M. E. M.; Endicott, J. A.; Johnson, L. N. Protein Kinase Inhibitors: Insights into Drug Design from Structure Science 2004, 303, 1800-1805 (Pubitemid 38374863)
-
(2004)
Science
, vol.303
, Issue.5665
, pp. 1800-1805
-
-
Noble, M.E.M.1
Endicott, J.A.2
Johnson, L.N.3
-
10
-
-
24944497371
-
Features of selective kinase inhibitors
-
DOI 10.1016/j.chembiol.2005.04.011
-
Knight, Z. A.; Shokat, K. M. Features of Selective Kinase Inhibitors Chem. Biol. 2005, 12, 621-637 (Pubitemid 43142039)
-
(2005)
Chemistry and Biology
, vol.12
, Issue.6
, pp. 621-637
-
-
Knight, Z.A.1
Shokat, K.M.2
-
11
-
-
32344446028
-
Can we rationally design promiscuous drugs?
-
DOI 10.1016/j.sbi.2006.01.013, PII S0959440X06000157
-
Hopkins, A. L.; Mason, J. S.; Overington, J. P. Can We Rationally Design Promiscuous Drugs? Curr. Opin. Struct. Biol. 2006, 16, 127-136 (Pubitemid 43221881)
-
(2006)
Current Opinion in Structural Biology
, vol.16
, Issue.1
, pp. 127-136
-
-
Hopkins, A.L.1
Mason, J.S.2
Overington, J.P.3
-
12
-
-
34547140875
-
The human disease network
-
DOI 10.1073/pnas.0701361104
-
Goh, K. I.; Cusick, M. E.; Valle, D.; Childs, B.; Vidal, M.; Barabási, A. L. The Human Disease Network Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 8685-8690 (Pubitemid 47175372)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.21
, pp. 8685-8690
-
-
Goh, K.-I.1
Cusick, M.E.2
Valle, D.3
Childs, B.4
Vidal, M.5
Barabasi, A.-L.6
-
13
-
-
33845762340
-
Multi-target therapeutics: when the whole is greater than the sum of the parts
-
DOI 10.1016/j.drudis.2006.11.008, PII S1359644606004697
-
Zimmermann, G. R.; Lehar, J.; Keith, C. T. Multi-Target Therapeutics: When the Whole Is Greater Than the Sum of the Parts Drug Discovery Today 2007, 12, 34-42 (Pubitemid 46014485)
-
(2007)
Drug Discovery Today
, vol.12
, Issue.1-2
, pp. 34-42
-
-
Zimmermann, G.R.1
Lehar, J.2
Keith, C.T.3
-
14
-
-
0001686739
-
Multiple BCR-ABL kinase domain mutations confer polyclonal resistance to the tyrosine kinase inhibitor imatinib (STI571) in chronic phase and blast crisis chronic myeloid leukemia
-
DOI 10.1016/S1535-6108(02)00096-X
-
Shah, N. P.; Nicoll, J. M.; Nagar, B.; Gorre, M. E.; Paquette, R. L.; Kuriyan, J.; Sawyers, C. L. Multiple BCR-Abl Kinase Domain Mutations Confer Polyclonal Resistance to the Tyrosine Kinase Inhibitor Imatinib (STI571) in Chronic Phase and Blast Crisis Chronic Myeloid Leukemia Cancer Cell 2002, 2, 117-125 (Pubitemid 41039112)
-
(2002)
Cancer Cell
, vol.2
, Issue.2
, pp. 117-125
-
-
Shah, N.P.1
Nicoll, J.M.2
Nagar, B.3
Gorre, M.E.4
Paquette, R.L.5
Kuriyan, J.6
Sawyers, C.L.7
-
15
-
-
3142676436
-
Overriding imatinib resistance with a novel ABL kinase inhibitor
-
DOI 10.1126/science.1099480
-
Shah, N. P.; Tran, C.; Lee, F. Y.; Chen, P.; Norris, D.; Sawyers, C. L. Overriding Imatinib Resistance with a Novel Abl Kinase Inhibitor Science 2004, 305, 399-401 (Pubitemid 38938156)
-
(2004)
Science
, vol.305
, Issue.5682
, pp. 399-401
-
-
Shah, N.P.1
Tran, C.2
Lee, F.Y.3
Chen, P.4
Norris, D.5
Sawyers, C.L.6
-
16
-
-
40049099220
-
The T790M mutation in EGFR kinase causes drug resistance by increasing the affinity for ATP
-
DOI 10.1073/pnas.0709662105
-
Yun, C. H.; Mengwasser, K. E.; Toms, A. V.; Woo, M. S.; Greulich, H.; Wong, K. K.; Meyerson, M.; Eck, M. J. The T790M Mutation in Egfr Kinase Causes Drug Resistance by Increasing the Affinity for Atp Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 2070-2075 (Pubitemid 351439466)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.6
, pp. 2070-2075
-
-
Yun, C.-H.1
Mengwasser, K.E.2
Toms, A.V.3
Woo, M.S.4
Greulich, H.5
Wong, K.-K.6
Meyerson, M.7
Eck, M.J.8
-
17
-
-
0034680167
-
Molecular Mechanisms That Confer Antibacterial Drug Resistance
-
Walsh, C. Molecular Mechanisms That Confer Antibacterial Drug Resistance Nature 2000, 406, 775-781
-
(2000)
Nature
, vol.406
, pp. 775-781
-
-
Walsh, C.1
-
18
-
-
0036527281
-
Resistance of herpesviruses to antiviral drugs: Clinical impacts and molecular mechanisms
-
DOI 10.1016/S1368-7646(02)00021-3, PII S1368764602000213
-
Gilbert, C.; Bestman-Smith, J.; Boivin, G. Resistance of Herpesviruses to Antiviral Drugs: Clinical Impacts and Molecular Mechanisms Drug Resist. Updates 2002, 5, 88-114 (Pubitemid 35024271)
-
(2002)
Drug Resistance Updates
, vol.5
, Issue.2
, pp. 88-114
-
-
Gilbert, C.1
Bestman-Smith, J.2
Boivin, G.3
-
19
-
-
0031969879
-
Clinical, cellular, and molecular factors that contribute to antifungal drug resistance
-
White, T. C.; Marr, K. A.; Bowden, R. A. Clinical, Cellular, and Molecular Factors That Contribute to Antifungal Drug Resistance Clin. Microbiol. Rev. 1998, 11, 382-402 (Pubitemid 28197359)
-
(1998)
Clinical Microbiology Reviews
, vol.11
, Issue.2
, pp. 382-402
-
-
White, T.C.1
Marr, K.A.2
Bowden, R.A.3
-
20
-
-
0027401399
-
Beyond chloroquine: Implications of drug resistance for evaluating malaria therapy efficacy and treatment policy in Africa
-
Bloland, P. B.; Lackritz, E. M.; Kazembe, P. N.; Were, J. B. O.; Steketee, R.; Campbell, C. C. Beyond Chloroquine: Implications of Drug Resistance for Evaluating Malaria Therapy Efficacy and Treatment Policy in Africa J. Infect. Dis. 1993, 167, 932-937 (Pubitemid 23088265)
-
(1993)
Journal of Infectious Diseases
, vol.167
, Issue.4
, pp. 932-937
-
-
Bloland, P.B.1
Lackritz, E.M.2
Kazembe, P.N.3
Were, J.B.O.4
Steketee, R.5
Campbell, C.C.6
-
21
-
-
38049018155
-
A Quantitative Analysis of Kinase Inhibitor Selectivity
-
Zarrinkar, P. P.; Karaman, M. W.; Herrgard, S.; Treiber, D. K.; Gallant, P.; Atteridge, C. E.; Campbell, B. T.; Chan, K. W.; Ciceri, P.; Davis, M. I.; Edeen, P. T.; Faraoni, R.; Floyd, M.; Hunt, J. P.; Lockhart, D. J.; Milanov, Z. V.; Morrison, M. J.; Pallares, G.; Patel, H. K.; Pritchard, S.; Wodicka, L. M. A Quantitative Analysis of Kinase Inhibitor Selectivity Nat. Biotechnol. 2008, 26, 127-132
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 127-132
-
-
Zarrinkar, P.P.1
Karaman, M.W.2
Herrgard, S.3
Treiber, D.K.4
Gallant, P.5
Atteridge, C.E.6
Campbell, B.T.7
Chan, K.W.8
Ciceri, P.9
Davis, M.I.10
Edeen, P.T.11
Faraoni, R.12
Floyd, M.13
Hunt, J.P.14
Lockhart, D.J.15
Milanov, Z.V.16
Morrison, M.J.17
Pallares, G.18
Patel, H.K.19
Pritchard, S.20
Wodicka, L.M.21
more..
-
22
-
-
36148943501
-
Gini coefficient: A new way to express selectivity of kinase inhibitors against a family of kinases
-
DOI 10.1021/jm070562u
-
Graczyk, P. P. Gini Coefficient: A New Way To Express Selectivity of Kinase Inhibitors against a Family of Kinases J. Med. Chem. 2007, 50, 5773-5779 (Pubitemid 350106032)
-
(2007)
Journal of Medicinal Chemistry
, vol.50
, Issue.23
, pp. 5773-5779
-
-
Graczyk, P.P.1
-
23
-
-
77953193637
-
Analysis of Kinase Inhibitor Selectivity Using a Thermodynamics-Based Partition Index
-
Cheng, A. C.; Eksterowicz, J.; Geuns-Meyer, S.; Sun, Y. X. Analysis of Kinase Inhibitor Selectivity Using a Thermodynamics-Based Partition Index J. Med. Chem. 2010, 53, 4502-4510
-
(2010)
J. Med. Chem.
, vol.53
, pp. 4502-4510
-
-
Cheng, A.C.1
Eksterowicz, J.2
Geuns-Meyer, S.3
Sun, Y.X.4
-
24
-
-
0025336463
-
Emerging approaches in the molecular design of receptor-selective peptide ligands: Conformational, topographical and dynamic considerations
-
Hruby, V. J. Emerging Approaches in the Molecular Design of Receptor-Selective Peptide Ligands: Conformational, Topographical and Dynamic Considerations Biochem. J. 1990, 268, 249-262 (Pubitemid 20193959)
-
(1990)
Biochemical Journal
, vol.268
, Issue.2
, pp. 249-262
-
-
Hruby, V.J.1
Al-Obeidi, F.2
Kazmierski, W.3
-
25
-
-
33947662384
-
Protein flexibility and species specificity in structure-based drug discovery: Dihydrofolate reductase as a test system
-
DOI 10.1021/ja068256d
-
Bowman, A. L.; Lerner, M. G.; Carlson, H. A. Protein Flexibility and Species Specificity in Structure-Based Drug Discovery: Dihydrofolate Reductase as a Test System J. Am. Chem. Soc. 2007, 129, 3634-3640 (Pubitemid 46502724)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.12
, pp. 3634-3640
-
-
Bowman, A.L.1
Lerner, M.G.2
Carlson, H.A.3
-
26
-
-
77950678935
-
Understanding Kinase Selectivity through Energetic Analysis of Binding Site Waters
-
Robinson, D. D.; Sherman, W.; Farid, R. Understanding Kinase Selectivity through Energetic Analysis of Binding Site Waters ChemMedChem 2010, 5, 618-627
-
(2010)
ChemMedChem
, vol.5
, pp. 618-627
-
-
Robinson, D.D.1
Sherman, W.2
Farid, R.3
-
27
-
-
24944497371
-
Features of selective kinase inhibitors
-
DOI 10.1016/j.chembiol.2005.04.011
-
Knight, Z. A.; Shokat, K. M. Features of Selective Kinase Inhibitors Chem. Biol. 2005, 12, 621-637 (Pubitemid 43142039)
-
(2005)
Chemistry and Biology
, vol.12
, Issue.6
, pp. 621-637
-
-
Knight, Z.A.1
Shokat, K.M.2
-
28
-
-
42049099944
-
Novel method for probing the specificity binding profile of ligands: Applications to HIV protease
-
DOI 10.1111/j.1747-0285.2008.00659.x
-
Sherman, W.; Tidor, B. Novel Method for Probing the Specificity Binding Profile of Ligands: Applications to HIV Protease Chem. Biol. Drug Des. 2008, 71, 387-407 (Pubitemid 351519509)
-
(2008)
Chemical Biology and Drug Design
, vol.71
, Issue.5
, pp. 387-407
-
-
Sherman, W.1
Tidor, B.2
-
29
-
-
77952716960
-
Molecular Shape and Medicinal Chemistry: A Perspective
-
Nicholls, A.; McGaughey, G. B.; Sheridan, R. P.; Good, A. C.; Warren, G.; Mathieu, M.; Muchmore, S. W.; Brown, S. P.; Grant, J. A.; Haigh, J. A.; Nevins, N.; Jain, A. N.; Kelley, B. Molecular Shape and Medicinal Chemistry: A Perspective J. Med. Chem. 2010, 53, 3862-3886
-
(2010)
J. Med. Chem.
, vol.53
, pp. 3862-3886
-
-
Nicholls, A.1
McGaughey, G.B.2
Sheridan, R.P.3
Good, A.C.4
Warren, G.5
Mathieu, M.6
Muchmore, S.W.7
Brown, S.P.8
Grant, J.A.9
Haigh, J.A.10
Nevins, N.11
Jain, A.N.12
Kelley, B.13
-
30
-
-
0031571090
-
Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: The shape of the active-site cavity controls substrate specificity
-
Mattevi, A.; Fraaije, M. W.; Mozzarelli, A.; Olivi, L.; Coda, A.; van Berkel, W. J. Crystal Structures and Inhibitor Binding in the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: The Shape of the Active-Site Cavity Controls Substrate Specificity Structure 1997, 5, 907-920 (Pubitemid 27324509)
-
(1997)
Structure
, vol.5
, Issue.7
, pp. 907-920
-
-
Mattevi, A.1
Fraaije, M.W.2
Mozzarelli, A.3
Olivi, L.4
Coda, A.5
Van Berkel, W.J.H.6
-
31
-
-
0039134578
-
Shape and Specificity in Mammalian 15-Lipoxygenase Active Site. The Functional Interplay of Sequence Determinants for the Reaction Specificity
-
Borngraber, S.; Browner, M.; Gillmor, S.; Gerth, C.; Anton, M.; Fletterick, R.; Kuhn, H. Shape and Specificity in Mammalian 15-Lipoxygenase Active Site. The Functional Interplay of Sequence Determinants for the Reaction Specificity J. Biol. Chem. 1999, 274, 37345-37350
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 37345-37350
-
-
Borngraber, S.1
Browner, M.2
Gillmor, S.3
Gerth, C.4
Anton, M.5
Fletterick, R.6
Kuhn, H.7
-
32
-
-
0030461132
-
Structural Basis for Selective Inhibition of Cyclooxygenase-2 by Anti-Inflammatory Agents
-
Kurumbail, R. G.; Stevens, A. M.; Gierse, J. K.; McDonald, J. J.; Stegeman, R. A.; Pak, J. Y.; Gildehaus, D.; Miyashiro, J. M.; Penning, T. D.; Seibert, K.; Isakson, P. C.; Stallings, W. C. Structural Basis for Selective Inhibition of Cyclooxygenase-2 by Anti-Inflammatory Agents Nature 1996, 384, 644-648
-
(1996)
Nature
, vol.384
, pp. 644-648
-
-
Kurumbail, R.G.1
Stevens, A.M.2
Gierse, J.K.3
McDonald, J.J.4
Stegeman, R.A.5
Pak, J.Y.6
Gildehaus, D.7
Miyashiro, J.M.8
Penning, T.D.9
Seibert, K.10
Isakson, P.C.11
Stallings, W.C.12
-
33
-
-
77249138784
-
Novel Ester and Acid Derivatives of the 1,5-Diarylpyrrole Scaffold as Anti-Inflammatory and Analgesic Agents. Synthesis and in Vitro and in Vivo Biological Evaluation
-
Biava, M.; Porretta, G. C.; Poce, G.; Battilocchio, C.; Manetti, F.; Botta, M.; Forli, S.; Sautebin, L.; Rossi, A.; Pergola, C.; Ghelardini, C.; Galeotti, N.; Makovec, F.; Giordani, A.; Anzellotti, P.; Patrignani, P.; Anzini, M. Novel Ester and Acid Derivatives of the 1,5-Diarylpyrrole Scaffold as Anti-Inflammatory and Analgesic Agents. Synthesis and in Vitro and in Vivo Biological Evaluation J. Med. Chem. 2010, 53, 723-733
-
(2010)
J. Med. Chem.
, vol.53
, pp. 723-733
-
-
Biava, M.1
Porretta, G.C.2
Poce, G.3
Battilocchio, C.4
Manetti, F.5
Botta, M.6
Forli, S.7
Sautebin, L.8
Rossi, A.9
Pergola, C.10
Ghelardini, C.11
Galeotti, N.12
Makovec, F.13
Giordani, A.14
Anzellotti, P.15
Patrignani, P.16
Anzini, M.17
-
34
-
-
33144466093
-
Effectiveness of nonpeptide clinical inhibitor TMC-114 on HIV-1 protease with highly drug resistant mutations D30N, I50V, and L90M
-
DOI 10.1021/jm050943c
-
Kovalevsky, A. Y.; Tie, Y. F.; Liu, F. L.; Boross, P. I.; Wang, Y. F.; Leshchenko, S.; Ghosh, A. K.; Harrison, R. W.; Weber, I. T. Effectiveness of Nonpeptide Clinical Inhibitor TMC-114 on HIV-1 Protease with Highly Drug Resistant Mutations D30N, I50V, and L90M J. Med. Chem. 2006, 49, 1379-1387 (Pubitemid 43271890)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.4
, pp. 1379-1387
-
-
Kovalevsky, A.Yu.1
Tie, Y.2
Liu, F.3
Boross, P.I.4
Wang, Y.-F.5
Leshchenko, S.6
Ghosh, A.K.7
Harrison, R.W.8
Weber, I.T.9
-
35
-
-
77951133082
-
Decomposing the Energetic Impact of Drug Resistant Mutations in HIV-1 Protease on Binding DRV
-
Cai, Y. F.; Schiffer, C. A. Decomposing the Energetic Impact of Drug Resistant Mutations in HIV-1 Protease on Binding DRV J. Chem. Theory Comput. 2010, 6, 1358-1368
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 1358-1368
-
-
Cai, Y.F.1
Schiffer, C.A.2
-
36
-
-
28444482769
-
Kinetic, stability, and structural changes in high-resolution crystal structures of HIV-1 protease with drug-resistant mutations L24I, I50V, and G73S
-
DOI 10.1016/j.jmb.2005.09.095, PII S0022283605012118
-
Liu, F.; Boross, P. I.; Wang, Y. F.; Tozser, J.; Louis, J. M.; Harrison, R. W.; Weber, I. T. Kinetic, Stability, and Structural Changes in High-Resolution Crystal Structures of HIV-1 Protease with Drug-Resistant Mutations L24I, I50V, and G73S J. Mol. Biol. 2005, 354, 789-800 (Pubitemid 41735502)
-
(2005)
Journal of Molecular Biology
, vol.354
, Issue.4
, pp. 789-800
-
-
Liu, F.1
Boross, P.I.2
Wang, Y.-F.3
Tozser, J.4
Louis, J.M.5
Harrison, R.W.6
Weber, I.T.7
-
37
-
-
0344234281
-
Protein Kinase a in Complex with Rho-Kinase Inhibitors Y-27632, Fasudil, and H-1152P: Structural Basis of Selectivity
-
DOI 10.1016/j.str.2003.11.002
-
Breitenlechner, C.; Gassel, M.; Hidaka, H.; Kinzel, V.; Huber, R.; Engh, R. A.; Bossemeyer, D. Protein Kinase a in Complex with Rho-Kinase Inhibitors Y-27632, Fasudil, and H-1152p: Structural Basis of Selectivity Structure 2003, 11, 1595-1607 (Pubitemid 37510358)
-
(2003)
Structure
, vol.11
, Issue.12
, pp. 1595-1607
-
-
Breitenlechner, C.1
Gassel, M.2
Hidaka, H.3
Kinzel, V.4
Huber, R.5
Engh, R.A.6
Bossemeyer, D.7
-
38
-
-
0037032835
-
The protein kinase complement of the human genome
-
DOI 10.1126/science.1075762
-
Manning, G.; Whyte, D. B.; Martinez, R.; Hunter, T.; Sudarsanam, S. The Protein Kinase Complement of the Human Genome Science 2002, 298, 1912-1934 (Pubitemid 35425239)
-
(2002)
Science
, vol.298
, Issue.5600
, pp. 1912-1934
-
-
Manning, G.1
Whyte, D.B.2
Martinez, R.3
Hunter, T.4
Sudarsanam, S.5
-
39
-
-
0037666888
-
Implications of protein flexibility for drug discovery
-
Teague, S. J. Implications of Protein Flexibility for Drug Discovery Nat. Rev. Drug Discovery 2003, 2, 527-541 (Pubitemid 37361745)
-
(2003)
Nature Reviews Drug Discovery
, vol.2
, Issue.7
, pp. 527-541
-
-
Teague, S.J.1
-
40
-
-
12644277392
-
The structural basis for the specificity of pyridinylimidazole inhibitors of p38 MAP kinase
-
Wilson, K. P.; McCaffrey, P. G.; Hsiao, K.; Pazhanisamy, S.; Galullo, V.; Bemis, G. W.; Fitzgibbon, M. J.; Garon, P. R.; Murcko, M. A.; Su, M. S. S. The Structural Basis for the Specificity of Pyridinylimidazole Inhibitors of p38 Map Kinase Chem. Biol. 1997, 4, 423-431 (Pubitemid 27288707)
-
(1997)
Chemistry and Biology
, vol.4
, Issue.6
, pp. 423-431
-
-
Wilson, K.P.1
McCaffrey, P.G.2
Hsiao, K.3
Pazhanisamy, S.4
Galullo, V.5
Bemis, G.W.6
Fitzgibbon, M.J.7
Caron, P.R.8
Murcko, M.A.9
Su, M.S.S.10
-
41
-
-
0001109246
-
A fast method of molecular shape comparison: A simple application of a Gaussian description of molecular shape
-
Grant, J. A.; Gallardo, M. A.; Pickup, B. T. A Fast Method of Molecular Shape Comparison: A Simple Application of a Gaussian Description of Molecular Shape J. Comput. Chem. 1996, 17, 1653-1666 (Pubitemid 126535414)
-
(1996)
Journal of Computational Chemistry
, vol.17
, Issue.14
, pp. 1653-1666
-
-
Grant, J.A.1
Gallardo, M.A.2
Pickup, B.T.3
-
42
-
-
80054905079
-
Rapid Shape-Based Ligand Alignment and Virtual Screening Method Based on Atom/Feature-Pair Similarities and Volume Overlap Scoring
-
Sastry, M.; Dixon, S.; Sherman, W. Rapid Shape-Based Ligand Alignment and Virtual Screening Method Based on Atom/Feature-Pair Similarities and Volume Overlap Scoring J. Chem. Inf. Model. 2011, 51, 2455-2466
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 2455-2466
-
-
Sastry, M.1
Dixon, S.2
Sherman, W.3
-
43
-
-
14944348527
-
A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction
-
DOI 10.1021/jm040163o
-
Rush, T. S.; Grant, J. A.; Mosyak, L.; Nicholls, A. A Shape-Based 3-D Scaffold Hopping Method and Its Application to a Bacterial Protein-Protein Interaction J. Med. Chem. 2005, 48, 1489-1495 (Pubitemid 40364556)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.5
, pp. 1489-1495
-
-
Rush III, T.S.1
Grant, J.A.2
Mosyak, L.3
Nicholls, A.4
-
44
-
-
0031165571
-
Optimization of electrostatic binding free energy
-
Lee, L.-P.; Tidor, B. Optimization of Electrostatic Binding Free Energy J. Chem. Phys. 1997, 106, 8681-8690 (Pubitemid 127626875)
-
(1997)
Journal of Chemical Physics
, vol.106
, Issue.21
, pp. 8681-8690
-
-
Lee, L.-P.1
Tidor, B.2
-
45
-
-
21944443282
-
Optimizing electrostatic affinity in ligand-receptor binding: Theory, computation, and ligand properties
-
DOI 10.1063/1.477375, PII S0021960698505417
-
Kangas, E.; Tidor, B. Optimizing Electrostatic Affinity in Ligand-Receptor Binding: Theory, Computation, and Ligand Properties J. Chem. Phys. 1998, 109, 7522-7545 (Pubitemid 128674420)
-
(1998)
Journal of Chemical Physics
, vol.109
, Issue.17
, pp. 7522-7545
-
-
Kangas, E.1
Tidor, B.2
-
46
-
-
0029564595
-
Are buried salt bridges important for protein stability and conformational specificity?
-
DOI 10.1038/nsb0295-122
-
Waldburger, C. D.; Schildbach, J. F.; Sauer, R. T. Are Buried Salt Bridges Important for Protein Stability and Conformational Specificity? Nat. Struct. Mol. Biol. 1995, 2, 122-128 (Pubitemid 26040648)
-
(1995)
Nature Structural Biology
, vol.2
, Issue.2
, pp. 122-128
-
-
Waldburger, C.D.1
Schildbach, J.F.2
Sauer, R.T.3
-
47
-
-
0028204490
-
Do salt bridges stabilize proteins? A continuum electrostatic analysis
-
Hendsch, Z. S.; Tidor, B. Do Salt Bridges Stabilize Proteins? A Continuum Electrostatic Analysis Protein Sci. 1994, 3, 211-226 (Pubitemid 24086354)
-
(1994)
Protein Science
, vol.3
, Issue.2
, pp. 211-226
-
-
Hendsch, Z.S.1
Tidor, B.2
-
48
-
-
0001463338
-
Designing substrate specificity by protein engineering of electrostatic interactions
-
DOI 10.1073/pnas.84.5.1219
-
Wells, J. A.; Powers, D. B.; Bott, R. R.; Graycar, T. P.; Estell, D. A. Designing Substrate Specificity by Protein Engineering of Electrostatic Interactions Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 1219-1223 (Pubitemid 17027324)
-
(1987)
Proceedings of the National Academy of Sciences of the United States of America
, vol.84
, Issue.5
, pp. 1219-1223
-
-
Wells, J.A.1
Powers, D.B.2
Bott, R.R.3
-
49
-
-
33750058234
-
Rational design of new binding specificity by simultaneous mutagenesis of calmodulin and a target peptide
-
DOI 10.1021/bi060857u
-
Green, D. F.; Dennis, A. T.; Fam, P. S.; Tidor, B.; Jasanoff, A. Rational Design of New Binding Specificity by Simultaneous Mutagenesis of Calmodulin and a Target Peptide Biochemistry 2006, 45, 12547-12559 (Pubitemid 44583697)
-
(2006)
Biochemistry
, vol.45
, Issue.41
, pp. 12547-12559
-
-
Green, D.F.1
Dennis, A.T.2
Fam, P.S.3
Tidor, B.4
Jasanoff, A.5
-
50
-
-
77950578546
-
Computational Design of Protein-Ligand Binding: Modifying the Specificity of Asparaginyl-tRNA Synthetase
-
Lopes, A.; Busch, M. S. A.; Simonson, T. Computational Design of Protein-Ligand Binding: Modifying the Specificity of Asparaginyl-tRNA Synthetase J. Comput. Chem. 2010, 31, 1273-1286
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 1273-1286
-
-
Lopes, A.1
Busch, M.S.A.2
Simonson, T.3
-
51
-
-
36949033814
-
Specificity in molecular design: A physical framework for probing the determinants of binding specificity and promiscuity in a biological environment
-
DOI 10.1021/jp074285e
-
Radhakrishnan, M. L.; Tidor, B. Specificity in Molecular Design: A Physical Framework for Probing the Determinants of Binding Specificity and Promiscuity in a Biological Environment J. Phys. Chem. B 2007, 111, 13419-13435 (Pubitemid 350241473)
-
(2007)
Journal of Physical Chemistry B
, vol.111
, Issue.47
, pp. 13419-13435
-
-
Radhakrishnan, M.L.1
Tidor, B.2
-
52
-
-
77956318578
-
Factor Xa Inhibitors: Next-Generation Antithrombotic Agents
-
Pinto, D. J. P.; Smallheer, J. M.; Cheney, D. L.; Knabb, R. M.; Wexler, R. R. Factor Xa Inhibitors: Next-Generation Antithrombotic Agents J. Med. Chem. 2010, 53, 6243-6274
-
(2010)
J. Med. Chem.
, vol.53
, pp. 6243-6274
-
-
Pinto, D.J.P.1
Smallheer, J.M.2
Cheney, D.L.3
Knabb, R.M.4
Wexler, R.R.5
-
54
-
-
35848929515
-
Discovery of 1-(4-methoxyphenyl)-7-oxo-6-(4-(2-oxopiperidin-1-yl)phenyl)- 4, 5,6,7-tetrahydro-1H-pyrazolo[3,4-c]pyridine-3-carboxamide (Apixaban, BMS-562247), a highly potent, selective, efficacious, and orally bioavailable inhibitor of blood coagulation factor Xa
-
DOI 10.1021/jm070245n
-
Pinto, D. J.; Orwat, M. J.; Koch, S.; Rossi, K. A.; Alexander, R. S.; Smallwood, A.; Wong, P. C.; Rendina, A. R.; Luettgen, J. M.; Knabb, R. M.; He, K.; Xin, B.; Wexler, R. R.; Lam, P. Y. Discovery of 1-(4-Methoxyphenyl)-7-oxo-6- (4-(2-oxopiperidin-1-yl)phenyl)-4,5,6,7-tetrahydro-1 H -pyrazolo[3,4- c ]pyridine-3-carboxamide (Apixaban, Bms-562247), a Highly Potent, Selective, Efficacious, and Orally Bioavailable Inhibitor of Blood Coagulation Factor Xa J. Med. Chem. 2007, 50, 5339-5356 (Pubitemid 350057846)
-
(2007)
Journal of Medicinal Chemistry
, vol.50
, Issue.22
, pp. 5339-5356
-
-
Pinto, D.J.P.1
Orwat, M.J.2
Koch, S.3
Rossi, K.A.4
Alexander, R.S.5
Smallwood, A.6
Wong, P.C.7
Rendina, A.R.8
Luettgen, J.M.9
Knabb, R.M.10
He, K.11
Xin, B.12
Wexler, R.R.13
Lam, P.Y.S.14
-
55
-
-
0037171819
-
Structure-based design of novel potent nonpeptide thrombin inhibitors
-
DOI 10.1021/jm0109513
-
Hauel, N. H.; Nar, H.; Priepke, H.; Ries, U.; Stassen, J. M.; Wienen, W. Structure-Based Design of Novel Potent Nonpeptide Thrombin Inhibitors J. Med. Chem. 2002, 45, 1757-1766 (Pubitemid 34415371)
-
(2002)
Journal of Medicinal Chemistry
, vol.45
, Issue.9
, pp. 1757-1766
-
-
Hauel, N.H.1
Nar, H.2
Priepke, H.3
Ries, U.4
Stassen, J.-M.5
Wienen, W.6
-
56
-
-
24944536065
-
Discovery of the novel antithrombotic agent 5-chloro-N-({(5S)-2-oxo-3-[4- (3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene-2-carboxamide (BAY 59-7939): An oral, direct factor Xa inhibitor
-
DOI 10.1021/jm050101d
-
Roehrig, S.; Straub, A.; Pohlmann, J.; Lampe, T.; Pernerstorfer, J.; Schlemmer, K. H.; Reinemer, P.; Perzborn, E. Discovery of the NovelAntithrombotic Agent 5-Chloro- N -({(5 S)-2-oxo-3-[4-(3-oxomorpholin-4-yl) phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene-2-carboxamide(Bay 59-7939): An Oral, Direct Factor Xa Inhibitor J. Med. Chem. 2005, 48, 5900-5908 (Pubitemid 41324601)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.19
, pp. 5900-5908
-
-
Roehrig, S.1
Straub, A.2
Pohlmann, J.3
Lampe, T.4
Pernerstorfer, J.5
Schlemmer, K.-H.6
Reinemer, P.7
Perzborn, E.8
-
57
-
-
0037920567
-
Three-dimensional quantitative structure-activity relationship analyses using comparative molecular field analysis and comparative molecular similarity indices analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa
-
DOI 10.1021/jm981062r
-
Bohm, M.; Sturzebecher, J.; Klebe, G. Three-Dimensional Quantitative Structure-Activity Relationship Analyses Using Comparative Molecular Field Analysis and Comparative Molecular Similarity Indices Analysis To Elucidate Selectivity Differences of Inhibitors Binding to Trypsin, Thrombin, and Factor Xa J. Med. Chem. 1999, 42, 458-477 (Pubitemid 29085107)
-
(1999)
Journal of Medicinal Chemistry
, vol.42
, Issue.3
, pp. 458-477
-
-
Bohm, M.1
Sturzebecher, J.2
Klebe, G.3
-
58
-
-
0029923976
-
X-ray Structure of Active Site-Inhibited Clotting Factor Xa
-
Brandstetter, H.; Kühne, A.; Bode, W.; Huber, R.; von der Saal, W.; Wirthensohn, K.; Engh, R. A. X-ray Structure of Active Site-Inhibited Clotting Factor Xa J. Biol. Chem. 1996, 271, 29988-29992
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 29988-29992
-
-
Brandstetter, H.1
Kühne, A.2
Bode, W.3
Huber, R.4
Von Der Saal, W.5
Wirthensohn, K.6
Engh, R.A.7
-
59
-
-
84857385182
-
Quantum Mechanically Derived Electrostatic Potentials of the S4 Binding Pockets of Trypsin-like Serine Proteases: Exploring the Potential for the S4-Cation Interaction
-
Cheney, D. L.; Mason, J. Quantum Mechanically Derived Electrostatic Potentials of the S4 Binding Pockets of Trypsin-like Serine Proteases: Exploring the Potential for the S4-Cation Interaction Abstr. Pap.-Am. Chem. Soc. 1998, 215, U539-U539
-
(1998)
Abstr. Pap.-Am. Chem. Soc.
, vol.215
-
-
Cheney, D.L.1
Mason, J.2
-
60
-
-
0034615991
-
Structure-based design of a low molecular weight, nonphosphorus, nonpeptide, and highly selective inhibitor of protein-tyrosine phosphatase 1B
-
DOI 10.1074/jbc.275.14.10300
-
Iversen, L. F.; Andersen, H. S.; Branner, S.; Mortensen, S. B.; Peters, G. H.; Norris, K.; Olsen, O. H.; Jeppesen, C. B.; Lundt, B. F.; Ripka, W.; Moller, K. B.; Moller, N. P. H. Structure-Based Design of a Low Molecular Weight, Nonphosphorus, Nonpeptide, and Highly Selective Inhibitor of Protein-Tyrosine Phosphatase 1b J. Biol. Chem. 2000, 275, 10300-10307 (Pubitemid 30202088)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.14
, pp. 10300-10307
-
-
Iversen, L.F.1
Andersen, H.S.2
Branner, S.3
Mortensen, S.B.4
Peters, G.H.5
Norris, K.6
Olsen, O.H.7
Jeppesen, C.B.8
Lundt, B.F.9
Ripka, W.10
Moller, K.B.11
Moller, N.P.H.12
-
61
-
-
0033134360
-
Charge optimization leads to favorable electrostatic binding free energy
-
Kangas, E.; Tidor, B. Charge Optimization Leads to Favorable Electrostatic Binding Free Energy Phys. Rev. E 1999, 59, 5958-5961 (Pubitemid 129690418)
-
(1999)
Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics
, vol.59
, Issue.5 B
, pp. 5958-5961
-
-
Kangas, E.1
Tidor, B.2
-
62
-
-
0033134360
-
Charge optimization leads to favorable electrostatic binding free energy
-
Kangas, E.; Tidor, B. Charge Optimization Leads to Favorable Electrostatic Binding Free Energy Phys. Rev. E 1999, 59, 5958-5961 (Pubitemid 129690418)
-
(1999)
Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics
, vol.59
, Issue.5 B
, pp. 5958-5961
-
-
Kangas, E.1
Tidor, B.2
-
63
-
-
0037621429
-
Charge optimization increases the potency and selectivity of a chorismate mutase inhibitor
-
DOI 10.1021/ja029447t
-
Mandal, A.; Hilvert, D. Charge Optimization Increases the Potency and Selectivity of a Chorismate Mutase Inhibitor J. Am. Chem. Soc. 2003, 125, 5598-5599 (Pubitemid 36592860)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.19
, pp. 5598-5599
-
-
Mandal, A.1
Hilvert, D.2
-
64
-
-
33646106797
-
Optimal Charges in Lead Progression: A Structure-Based Neuraminidase Case Study
-
Armstrong, K. A.; Tidor, B.; Cheng, A. C. Optimal Charges in Lead Progression: A Structure-Based Neuraminidase Case Study J. Med. Chem. 2006, 49, 2470-2477
-
(2006)
J. Med. Chem.
, vol.49
, pp. 2470-2477
-
-
Armstrong, K.A.1
Tidor, B.2
Cheng, A.C.3
-
65
-
-
0001192934
-
Electrostatic Specificity in Molecular Ligand Design
-
Kangas, E.; Tidor, B. Electrostatic Specificity in Molecular Ligand Design J. Chem. Phys. 2000, 112, 9120-9131
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 9120-9131
-
-
Kangas, E.1
Tidor, B.2
-
66
-
-
43249113922
-
HIV-1 protease inhibitors from inverse design in the substrate envelope exhibit subnanomolar binding to drug-resistant variants
-
DOI 10.1021/ja076558p
-
Altman, M. D.; Ali, A.; Reddy, G. S. K. K.; Nalam, M. N. L.; Anjum, S. G.; Cao, H.; Chellappan, S.; Kairys, V.; Fernandes, M. X.; Gilson, M. K.; Schiffer, C. A.; Rana, T. M.; Tidor, B. HIV-1 Protease Inhibitors from Inverse Design in the Substrate Envelope Exhibit Subnanomolar Binding to Drug-Resistant Variants J. Am. Chem. Soc. 2008, 130, 6099-6113 (Pubitemid 351657286)
-
(2008)
Journal of the American Chemical Society
, vol.130
, Issue.19
, pp. 6099-6113
-
-
Altman, M.D.1
Ali, A.2
Reddy, G.S.K.K.3
Nalam, M.N.L.4
Anjum, S.G.5
Cao, H.6
Chellappan, S.7
Kairys, V.8
Fernandes, M.X.9
Gilson, M.K.10
Schiffer, C.A.11
Rana, T.M.12
Tidor, B.13
-
67
-
-
0038298792
-
Profiling charge complementarity and selectivity for binding at the protein surface
-
Sulea, T.; Purisima, E. O. Profiling Charge Complernentarity and Selectivity for Binding at the Protein Surface Biophys. J. 2003, 84, 2883-2896 (Pubitemid 36531742)
-
(2003)
Biophysical Journal
, vol.84
, Issue.5
, pp. 2883-2896
-
-
Sulea, T.1
Purisima, E.O.2
-
68
-
-
0034825821
-
Optimizing Ligand Charges for Maximum Binding Affinity. A Solvated Interaction Energy Approach
-
Sulea, T.; Purisima, E. O. Optimizing Ligand Charges for Maximum Binding Affinity. A Solvated Interaction Energy Approach J. Phys. Chem. B 2001, 105, 889-899
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 889-899
-
-
Sulea, T.1
Purisima, E.O.2
-
69
-
-
33751219247
-
Coupled atomic charge selectivity for optimal ligand-charge distributions at protein binding sites
-
DOI 10.1002/jcc.20481
-
Bhat, S.; Sulea, T.; Purisima, E. O. Coupled Atomic Charge Selectivity for Optimal Ligand-Charge Distributions at Protein Binding Sites J. Comput. Chem. 2006, 27, 1899-1907 (Pubitemid 44787009)
-
(2006)
Journal of Computational Chemistry
, vol.27
, Issue.16
, pp. 1899-1907
-
-
Bhat, S.1
Sulea, T.2
Purisima, E.O.3
-
70
-
-
7744247282
-
A CoMFA study of COX-2 inhibitors with receptor based alignment
-
DOI 10.1016/j.jmgm.2004.07.003, PII S1093326304000749
-
Datar, P. A.; Coutinho, E. C. A CoMFA Study of COX-2 Inhibitors with Receptor Based Alignment J. Mol. Graphics Modell. 2004, 23, 239-251 (Pubitemid 39463103)
-
(2004)
Journal of Molecular Graphics and Modelling
, vol.23
, Issue.3
, pp. 239-251
-
-
Datar, P.A.1
Coutinho, E.C.2
-
71
-
-
0029873697
-
Rapid, electrostatically assisted association of proteins
-
DOI 10.1038/nsb0596-427
-
Schreiber, G.; Fersht, A. R. Rapid, Electrostatically Assisted Association of Proteins Nat. Struct. Mol. Biol. 1996, 3, 427-431 (Pubitemid 26139441)
-
(1996)
Nature Structural Biology
, vol.3
, Issue.5
, pp. 427-431
-
-
Schreiber, G.1
Fersht, A.R.2
-
72
-
-
17744390877
-
Action-at-a-distance interactions enhance protein binding affinity
-
DOI 10.1110/ps.041283105
-
Joughin, B. A.; Green, D. F.; Tidor, B. Action-at-a-Distance Interactions Enhance Protein Binding Affinity Protein Sci. 2005, 14, 1363-1369 (Pubitemid 40577816)
-
(2005)
Protein Science
, vol.14
, Issue.5
, pp. 1363-1369
-
-
Joughin, B.A.1
Green, D.F.2
Tidor, B.3
-
73
-
-
32344451863
-
Free-energy simulations and experiments reveal long-range electrostatic interactions and substrate-assisted specificity in an aminoacyl-tRNA synthetase
-
DOI 10.1002/cbic.200500364
-
Thompson, D.; Plateau, P.; Simonson, T. Free-Energy Simulations and Experiments Reveal Long-Range Electrostatic Interactions and Substrate-Assisted Specificity in an Aminoacyl-Trna Synthetase ChemBioChem 2006, 7, 337-344 (Pubitemid 43220948)
-
(2006)
ChemBioChem
, vol.7
, Issue.2
, pp. 337-344
-
-
Thompson, D.1
Plateau, P.2
Simonson, T.3
-
74
-
-
58549114067
-
A Conserved Protonation-Dependent Switch Controls Drug Binding in the Abl Kinase
-
Shan, Y.; Seeliger, M. A.; Eastwood, M. P.; Frank, F.; Xu, H.; Jensen, M. ÿ.; Dror, R. O.; Kuriyan, J.; Shaw, D. E. A Conserved Protonation- Dependent Switch Controls Drug Binding in the Abl Kinase Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 139-144
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 139-144
-
-
Shan, Y.1
Seeliger, M.A.2
Eastwood, M.P.3
Frank, F.4
Xu, H.5
Ÿ., J.M.6
Dror, R.O.7
Kuriyan, J.8
Shaw, D.E.9
-
75
-
-
35748985280
-
Protein kinase inhibitors: Structural insights into selectivity
-
DOI 10.2174/138161207781757042
-
Thaimattam, R.; Banerjee, R.; Miglani, R.; Iqbal, J. Protein Kinase Inhibitors: Structural Insights into Selectivity Curr. Pharm. Des. 2007, 13, 2751-2765 (Pubitemid 350130972)
-
(2007)
Current Pharmaceutical Design
, vol.13
, Issue.27
, pp. 2751-2765
-
-
Thaimattam, R.1
Banerjee, R.2
Miglani, R.3
Iqbal, J.4
-
76
-
-
33745298429
-
Rational design of inhibitors that bind to inactive kinase conformations
-
DOI 10.1038/nchembio799, PII N799
-
Liu, Y.; Gray, N. S. Rational Design of Inhibitors That Bind to Inactive Kinase Conformations Nat. Chem. Biol. 2006, 2, 358-364 (Pubitemid 43936934)
-
(2006)
Nature Chemical Biology
, vol.2
, Issue.7
, pp. 358-364
-
-
Liu, Y.1
Gray, N.S.2
-
77
-
-
0034665713
-
Structural Mechanism for STI-571 Inhibition of Abelson Tyrosine Kinase
-
Schindler, T.; Bornmann, W.; Pellicena, P.; Miller, W. T.; Clarkson, B.; Kuriyan, J. Structural Mechanism for STI-571 Inhibition of Abelson Tyrosine Kinase Science 2000, 289, 1938-1942
-
(2000)
Science
, vol.289
, pp. 1938-1942
-
-
Schindler, T.1
Bornmann, W.2
Pellicena, P.3
Miller, W.T.4
Clarkson, B.5
Kuriyan, J.6
-
78
-
-
21244476768
-
BIRB796 inhibits all p38 MAPK isoforms in vitro and in vivo
-
DOI 10.1074/jbc.M414221200
-
Kuma, Y.; Sabio, G.; Bain, J.; Shpiro, N.; M•rquez, R.; Cuenda, A. BIRB796 Inhibits All p38 Mapk Isoforms in Vitro and in Vivo J. Biol. Chem. 2005, 280, 19472-19479 (Pubitemid 41379467)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.20
, pp. 19472-19479
-
-
Kuma, Y.1
Sabio, G.2
Bain, J.3
Shpiro, N.4
Marquez, R.5
Cuenda, A.6
-
79
-
-
80054990842
-
A Possible Mechanism for Hepatotoxicity Induced by Birb-796, an Orally Active p38 Mitogen-Activated Protein Kinase Inhibitor
-
Iwano, S.; Asaoka, Y.; Akiyama, H.; Takizawa, S.; Nobumasa, H.; Hashimoto, H.; Miyamoto, Y. A Possible Mechanism for Hepatotoxicity Induced by Birb-796, an Orally Active p38 Mitogen-Activated Protein Kinase Inhibitor J. Appl. Toxicol. 2011, 31, 671-677
-
(2011)
J. Appl. Toxicol.
, vol.31
, pp. 671-677
-
-
Iwano, S.1
Asaoka, Y.2
Akiyama, H.3
Takizawa, S.4
Nobumasa, H.5
Hashimoto, H.6
Miyamoto, Y.7
-
80
-
-
31344438721
-
SAR and inhibitor complex structure determination of a novel class of potent and specific Aurora kinase inhibitors
-
DOI 10.1016/j.bmcl.2005.11.053, PII S0960894X05014757
-
Heron, N. M.; Anderson, M.; Blowers, D. P.; Breed, J.; Eden, J. M.; Green, S.; Hill, G. B.; Johnson, T.; Jung, F. H.; McMiken, H. H. J.; Mortlock, A. A.; Pannifer, A. D.; Pauptit, R. A.; Pink, J.; Roberts, N. J.; Rowsell, S. SAR and Inhibitor Complex Structure Determination of a Novel Class of Potent and Specific Aurora Kinase Inhibitors Bioorg. Med. Chem. Lett. 2006, 16, 1320-1323 (Pubitemid 43143015)
-
(2006)
Bioorganic and Medicinal Chemistry Letters
, vol.16
, Issue.5
, pp. 1320-1323
-
-
Heron, N.M.1
Anderson, M.2
Blowers, D.P.3
Breed, J.4
Eden, J.M.5
Green, S.6
Hill, G.B.7
Johnson, T.8
Jung, F.H.9
McMiken, H.H.J.10
Mortlock, A.A.11
Pannifer, A.D.12
Pauptit, R.A.13
Pink, J.14
Roberts, N.J.15
Rowsell, S.16
-
81
-
-
2342639645
-
VX-680, a potent and selective small-molecule inhibitor of the Aurora kinases, suppresses tumor growth in vivo
-
DOI 10.1038/nm1003
-
Harrington, E. A.; Bebbington, D.; Moore, J.; Rasmussen, R. K.; Ajose-Adeogun, A. O.; Nakayama, T.; Graham, J. A.; Demur, C.; Hercend, T.; Diu-Hercend, A. VX-680, a Potent and Selective Small-Molecule Inhibitor of the Aurora Kinases, Suppresses Tumor Growth in Vivo Nat. Med. 2004, 10, 262-267 (Pubitemid 38667616)
-
(2004)
Nature Medicine
, vol.10
, Issue.3
, pp. 262-267
-
-
Harrington, E.A.1
Bebbington, D.2
Moore, J.3
Rasmussen, R.K.4
Ajose-Adeogun, A.O.5
Nakayama, T.6
Graham, J.A.7
Demur, C.8
Hercend, T.9
Diu-Hercend, A.10
Su, M.11
Golec, J.M.C.12
Miller, K.M.13
-
82
-
-
33947518802
-
Crystal structure of the tyrosine kinase domain of colony-stimulating factor-1 receptor (cFMS) in complex with two inhibitors
-
DOI 10.1074/jbc.M608183200
-
Schubert, C.; Schalk-Hihi, C.; Struble, G. T.; Ma, H. C.; Petrounia, I. P.; Brandt, B.; Deckman, I. C.; Patch, R. J.; Player, M. R.; Spurlino, J. C.; Springer, B. A. Crystal Structure of the Tyrosine Kinase Domain of Colony-Stimulating Factor-1 Receptor (cFMS) in Complex with Two Inhibitors J. Biol. Chem. 2007, 282, 4094-4101 (Pubitemid 47084443)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.6
, pp. 4094-4101
-
-
Schubert, C.1
Schalk-Hihi, C.2
Struble, G.T.3
Ma, H.-C.4
Petrounia, I.P.5
Brandt, B.6
Deckman, I.C.7
Patch, R.J.8
Player, M.R.9
Spurlino, J.C.10
Springer, B.A.11
-
83
-
-
76049128717
-
Structural Analysis of the Catalytically Inactive Kinase Domain of the Human EGF Receptor 3
-
Jura, N.; Shan, Y.; Cao, X.; Shaw, D. E.; Kuriyan, J. Structural Analysis of the Catalytically Inactive Kinase Domain of the Human EGF Receptor 3 Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 21608-21613
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 21608-21613
-
-
Jura, N.1
Shan, Y.2
Cao, X.3
Shaw, D.E.4
Kuriyan, J.5
-
84
-
-
33745002702
-
An Allosteric Mechanism for Activation of the Kinase Domain of Epidermal Growth Factor Receptor
-
DOI 10.1016/j.cell.2006.05.013, PII S0092867406005848
-
Zhang, X.; Gureasko, J.; Shen, K.; Cole, P. A.; Kuriyan, J. An Allosteric Mechanism for Activation of the Kinase Domain of Epidermal Growth Factor Receptor Cell 2006, 125, 1137-1149 (Pubitemid 43866200)
-
(2006)
Cell
, vol.125
, Issue.6
, pp. 1137-1149
-
-
Zhang, X.1
Gureasko, J.2
Shen, K.3
Cole, P.A.4
Kuriyan, J.5
-
85
-
-
60849113175
-
Kit Kinase Mutants Show Unique Mechanisms of Drug Resistance to Imatinib and Sunitinib in Gastrointestinal Stromal Tumor Patients
-
Gajiwala, K. S.; Wu, J. C.; Christensen, J.; Deshmukh, G. D.; Diehl, W.; DiNitto, J. P.; English, J. M.; Greig, M. J.; He, Y. A.; Jacques, S. L. Kit Kinase Mutants Show Unique Mechanisms of Drug Resistance to Imatinib and Sunitinib in Gastrointestinal Stromal Tumor Patients Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 1542-1547
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 1542-1547
-
-
Gajiwala, K.S.1
Wu, J.C.2
Christensen, J.3
Deshmukh, G.D.4
Diehl, W.5
Dinitto, J.P.6
English, J.M.7
Greig, M.J.8
He, Y.A.9
Jacques, S.L.10
-
86
-
-
65749105992
-
Structural Characterization of Proline-Rich Tyrosine Kinase 2 (PYK2) Reveals a Unique (DFG-Out) Conformation and Enables Inhibitor Design
-
Han, S.; Mistry, A.; Chang, J. S.; Cunningham, D.; Griffor, M.; Bonnette, P. C.; Wang, H.; Chrunyk, B. A.; Aspnes, G. E.; Walker, D. P.; Brosius, A. D.; Buckbinder, L. Structural Characterization of Proline-Rich Tyrosine Kinase 2 (PYK2) Reveals a Unique (DFG-Out) Conformation and Enables Inhibitor Design J. Biol. Chem. 2009, 284, 13193-13201
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 13193-13201
-
-
Han, S.1
Mistry, A.2
Chang, J.S.3
Cunningham, D.4
Griffor, M.5
Bonnette, P.C.6
Wang, H.7
Chrunyk, B.A.8
Aspnes, G.E.9
Walker, D.P.10
Brosius, A.D.11
Buckbinder, L.12
-
87
-
-
58149102648
-
Type-II Kinase Inhibitor Docking, Screening, and Profiling Using Modified Structures of Active Kinase States
-
Kufareva, I.; Abagyan, R. Type-II Kinase Inhibitor Docking, Screening, and Profiling Using Modified Structures of Active Kinase States J. Med. Chem. 2008, 51, 7921-7932
-
(2008)
J. Med. Chem.
, vol.51
, pp. 7921-7932
-
-
Kufareva, I.1
Abagyan, R.2
-
88
-
-
0034813214
-
Predicting and harnessing protein flexibility in the design of species-specific inhibitors of thymidylate synthase
-
DOI 10.1016/S1074-5521(01)00067-9, PII S1074552101000679
-
Fritz, T. A.; Tondi, D.; Finer-Moore, J. S.; Costi, M. P.; Stroud, R. M. Predicting and Harnessing Protein Flexibility in the Design of Species-Specific Inhibitors of Thymidylate Synthase Chem. Biol. 2001, 8, 981-995 (Pubitemid 32918927)
-
(2001)
Chemistry and Biology
, vol.8
, Issue.10
, pp. 981-995
-
-
Fritz, T.A.1
Tondi, D.2
Finer-Moore, J.S.3
Costi M.Paola4
Stroud, R.M.5
-
89
-
-
0032510373
-
Dihydropyrancarboxamides Related to Zanamivir: A New Series of Inhibitors of Influenza Virus Sialidases. 2. Crystallographic and Molecular Modeling Study of Complexes of 4-Amino-4 H -pyran-6-carboxamides and Sialidase from Influenza Virus Types A and B
-
Taylor, N. R.; Cleasby, A.; Singh, O.; Skarzynski, T.; Wonacott, A. J.; Smith, P. W.; Sollis, S. L.; Howes, P. D.; Cherry, P. C.; Bethell, R.; Colman, P.; Varghese, J. Dihydropyrancarboxamides Related to Zanamivir: A New Series of Inhibitors of Influenza Virus Sialidases. 2. Crystallographic and Molecular Modeling Study of Complexes of 4-Amino-4 H -pyran-6-carboxamides and Sialidase from Influenza Virus Types A and B J. Med. Chem. 1998, 41, 798-807
-
(1998)
J. Med. Chem.
, vol.41
, pp. 798-807
-
-
Taylor, N.R.1
Cleasby, A.2
Singh, O.3
Skarzynski, T.4
Wonacott, A.J.5
Smith, P.W.6
Sollis, S.L.7
Howes, P.D.8
Cherry, P.C.9
Bethell, R.10
Colman, P.11
Varghese, J.12
-
90
-
-
0037038311
-
Discovery of γ-lactam hydroxamic acids as selective inhibitors of tumor necrosis factor α converting enzyme: Design, synthesis, and structure-activity relationships
-
DOI 10.1021/jm0255670
-
Duan, J. J.; Chen, L.; Wasserman, Z. R.; Lu, Z.; Liu, R. Q.; Covington, M. B.; Qian, M.; Hardman, K. D.; Magolda, R. L.; Newton, R. C.; Christ, D. D.; Wexler, R. R.; Decicco, C. P. Discovery of Gamma-Lactam Hydroxamic Acids as Selective Inhibitors of Tumor Necrosis Factor Alpha Converting Enzyme: Design, Synthesis, and Structure-Activity Relationships J. Med. Chem. 2002, 45, 4954-4957 (Pubitemid 35278690)
-
(2002)
Journal of Medicinal Chemistry
, vol.45
, Issue.23
, pp. 4954-4957
-
-
Duan, J.J.-W.1
Chen, L.2
Wasserman, Z.R.3
Lu, Z.4
Liu, R.-Q.5
Covington, M.B.6
Qian, M.7
Hardman, K.D.8
Magolda, R.L.9
Newton, R.C.10
Christ, D.D.11
Wexler, R.R.12
Decicco, C.P.13
-
91
-
-
33745207135
-
Ik682, a Tight Binding Inhibitor of TACE
-
Niu, X.; Umland, S.; Ingram, R.; Beyer, B. M.; Liu, Y. H.; Sun, J.; Lundell, D.; Orth, P. Ik682, a Tight Binding Inhibitor of TACE Arch. Biochem. Biophys. 2006, 451, 43-50
-
(2006)
Arch. Biochem. Biophys.
, vol.451
, pp. 43-50
-
-
Niu, X.1
Umland, S.2
Ingram, R.3
Beyer, B.M.4
Liu, Y.H.5
Sun, J.6
Lundell, D.7
Orth, P.8
-
92
-
-
74049143519
-
The Discovery of Novel Tartrate-Based Tnf-[Alpha] Converting Enzyme (TACE) Inhibitors
-
Rosner, K. E.; Guo, Z.; Orth, P.; Shipps, G. W., Jr.; Belanger, D. B.; Chan, T. Y.; Curran, P. J.; Dai, C.; Deng, Y.; Girijavallabhan, V. M. The Discovery of Novel Tartrate-Based Tnf-[Alpha] Converting Enzyme (TACE) Inhibitors Bioorg. Med. Chem. Lett. 2010, 20, 1189-1193
-
(2010)
Bioorg. Med. Chem. Lett.
, vol.20
, pp. 1189-1193
-
-
Rosner, K.E.1
Guo, Z.2
Orth, P.3
Shipps Jr., G.W.4
Belanger, D.B.5
Chan, T.Y.6
Curran, P.J.7
Dai, C.8
Deng, Y.9
Girijavallabhan, V.M.10
-
93
-
-
35348900727
-
Matrix metalloproteinase-inhibitor interaction: The solution structure of the catalytic domain of human matrix metalloproteinase-3 with different inhibitors
-
DOI 10.1007/s00775-007-0288-9
-
Alcaraz, L. A.; Banci, L.; Bertini, I.; Cantini, F.; Donaire, A.; Gonnelli, L. Matrix Metalloproteinase-Inhibitor Interaction: The Solution Structure of the Catalytic Domain of Human Matrix Metalloproteinase-3 with Different Inhibitors J. Biol. Inorg. Chem. 2007, 12, 1197-1206 (Pubitemid 47594261)
-
(2007)
Journal of Biological Inorganic Chemistry
, vol.12
, Issue.8
, pp. 1197-1206
-
-
Alcaraz, L.A.1
Banci, L.2
Bertini, I.3
Cantini, F.4
Donaire, A.5
Gonnelli, L.6
-
94
-
-
34548670257
-
Crystal Structures of MMP-9 Complexes with Five Inhibitors: Contribution of the Flexible Arg424 Side-chain to Selectivity
-
DOI 10.1016/j.jmb.2007.05.068, PII S0022283607007085
-
Tochowicz, A.; Maskos, K.; Huber, R.; Oltenfreiter, R.; Dive, V.; Yiotakis, A.; Zanda, M.; Bode, W.; Goettig, P. Crystal Structures of Mmp-9 Complexes with Five Inhibitors: Contribution of the Flexible Arg424 Side-Chain to Selectivity J. Mol. Biol. 2007, 371, 989-1006 (Pubitemid 47411454)
-
(2007)
Journal of Molecular Biology
, vol.371
, Issue.4
, pp. 989-1006
-
-
Tochowicz, A.1
Maskos, K.2
Huber, R.3
Oltenfreiter, R.4
Dive, V.5
Yiotakis, A.6
Zanda, M.7
Bode, W.8
Goettig, P.9
-
95
-
-
33745088619
-
Use of an induced fit receptor structure in virtual screening
-
DOI 10.1111/j.1747-0285.2005.00327.x
-
Sherman, W.; Beard, H. S.; Farid, R. Use of an Induced Fit Receptor Structure in Virtual Screening Chem. Biol. Drug Des. 2006, 67, 83-84 (Pubitemid 43881391)
-
(2006)
Chemical Biology and Drug Design
, vol.67
, Issue.1
, pp. 83-84
-
-
Sherman, W.1
Beard, H.S.2
Farid, R.3
-
96
-
-
21644473891
-
Representing receptor flexibility in ligand docking through relevant normal modes
-
DOI 10.1021/ja042260c
-
Cavasotto, C. N.; Kovacs, J. A.; Abagyan, R. A. Representing Receptor Flexibility in Ligand Docking through Relevant Normal Modes J. Am. Chem. Soc. 2005, 127, 9632-9640 (Pubitemid 40934775)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.26
, pp. 9632-9640
-
-
Cavasotto, C.N.1
Kovacs, J.A.2
Abagyan, R.A.3
-
97
-
-
47249102090
-
A New Method for Ligand Docking to Flexible Receptors by Dual Alanine Scanning and Refinement (Scare)
-
Bottegoni, G.; Kufareva, I.; Totrov, M.; Abagyan, R. A New Method for Ligand Docking to Flexible Receptors by Dual Alanine Scanning and Refinement (Scare) J. Comput.-Aided Mol. Des. 2008, 22, 311-325
-
(2008)
J. Comput.-Aided Mol. Des.
, vol.22
, pp. 311-325
-
-
Bottegoni, G.1
Kufareva, I.2
Totrov, M.3
Abagyan, R.4
-
98
-
-
34247197110
-
Docking ligands into flexible and solvated macromolecules. 1. Development and validation of FITTED 1.0
-
DOI 10.1021/ci6002637
-
Corbeil, C. R.; Englebienne, P.; Moitessier, N. Docking Ligands into Flexible and Solvated Macromolecules. 1. Development and Validation of Fitted 1.0 J. Chem. Inf. Model. 2007, 47, 435-449 (Pubitemid 46615946)
-
(2007)
Journal of Chemical Information and Modeling
, vol.47
, Issue.2
, pp. 435-449
-
-
Corbeil, C.R.1
Englebienne, P.2
Moitessier, N.3
-
99
-
-
31544450787
-
Novel procedure for modeling ligand/receptor induced fit effects
-
DOI 10.1021/jm050540c
-
Sherman, W.; Day, T.; Jacobson, M. P.; Friesner, R. A.; Farid, R. Novel Procedure for Modeling Ligand/Receptor Induced Fit Effects J. Med. Chem. 2006, 49, 534-553 (Pubitemid 43157487)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.2
, pp. 534-553
-
-
Sherman, W.1
Day, T.2
Jacobson, M.P.3
Friesner, R.A.4
Farid, R.5
-
100
-
-
0030466444
-
Just add water! The effect of water on the specificity of protein- ligand binding sites and its potential application to drug design
-
Ladbury, J. E. Just Add Water! The Effect of Water on the Specificity of Protein-Ligand Binding Sites and Its Potential Application to Drug Design Chem. Biol. 1996, 3, 973-980 (Pubitemid 27058821)
-
(1996)
Chemistry and Biology
, vol.3
, Issue.12
, pp. 973-980
-
-
Ladbury, J.E.1
-
102
-
-
0030059225
-
Ligand binding: Molecular mechanics calculation of the streptavidin-biotin rupture force
-
Grubmüller, H.; Heymann, B.; Tavan, P. Ligand Binding: Molecular Mechanics Calculation of the Streptavidin-Biotin Rupture Force Science 1996, 271, 997-999 (Pubitemid 26066398)
-
(1996)
Science
, vol.271
, Issue.5251
, pp. 997-999
-
-
Grubmuller, H.1
Heymann, B.2
Tavan, P.3
-
103
-
-
81055130316
-
Mechanism of the Hydrophobic Effect in the Biomolecular Recognition of Arylsulfonamides by Carbonic Anhydrase
-
Snyder, P. W.; Mecinović, J.; Moustakas, D. T.; Thomas, S. W., III; Harder, M.; Mack, E. T.; Lockett, M. R.; Héroux, A.; Sherman, W.; Whitesides, G. M. Mechanism of the Hydrophobic Effect in the Biomolecular Recognition of Arylsulfonamides by Carbonic Anhydrase Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 17889-17894
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 17889-17894
-
-
Snyder, P.W.1
Mecinović, J.2
Moustakas, D.T.3
Thomas III, S.W.4
Harder, M.5
MacK, E.T.6
Lockett, M.R.7
Héroux, A.8
Sherman, W.9
Whitesides, G.M.10
-
104
-
-
77949358478
-
The Role of Water Molecules in Computational Drug Design
-
de Beer, S.; Vermeulen, N. P. E; Oostenbrink, C. The Role of Water Molecules in Computational Drug Design Curr. Top. Med. Chem. 2010, 10, 55-66
-
(2010)
Curr. Top. Med. Chem.
, vol.10
, pp. 55-66
-
-
De Beer, S.1
Vermeulen, N.P.E.2
Oostenbrink, C.3
-
105
-
-
75749127293
-
Role of Water in Molecular Docking Simulations of Cytochrome P450 2D6
-
Santos, R.; Hritz, J.; Oostenbrink, C. Role of Water in Molecular Docking Simulations of Cytochrome P450 2D6 J. Chem. Inf. Model. 2009, 50, 146-154
-
(2009)
J. Chem. Inf. Model.
, vol.50
, pp. 146-154
-
-
Santos, R.1
Hritz, J.2
Oostenbrink, C.3
-
106
-
-
4143121554
-
Free energy of ligand binding to protein: Evaluation of the contribution of water molecules by computational methods
-
Cozzini, P.; Fornabaio, M.; Marabotti, A.; Abraham, D. J.; Kellogg, G. E.; Mozzarelli, A. Free Energy of Ligand Binding to Protein: Evaluation of the Contribution of Water Molecules by Computational Methods Curr. Med. Chem. 2004, 11, 3093-3118 (Pubitemid 39545578)
-
(2004)
Current Medicinal Chemistry
, vol.11
, Issue.23
, pp. 3093-3118
-
-
Cozzini, P.1
Fornabaio, M.2
Marabotti, A.3
Abraham, D.J.4
Kellogs, G.E.5
Mozzarelli, A.6
-
107
-
-
24944548627
-
Amine hydration: A united-atom force-field solution
-
DOI 10.1002/cphc.200400542
-
Oostenbrink, C.; Juchli, D.; van Gunsteren, W. F. Amine Hydration: A United-Atom Force-Field Solution ChemPhysChem 2005, 6, 1800-1804 (Pubitemid 41330001)
-
(2005)
ChemPhysChem
, vol.6
, Issue.9
, pp. 1800-1804
-
-
Oostenbrink, C.1
Juchli, D.2
Van Gunsteren, W.F.3
-
108
-
-
0028180528
-
Energy Calculations and Analysis of HIV-1 Protease-Inhibitor Crystal Structures
-
Gustchina, A.; Sansom, C.; Prevost, M.; Richelle, J.; Wodak, S. Y.; Wlodawer, A.; Weber, I. T. Energy Calculations and Analysis of HIV-1 Protease-Inhibitor Crystal Structures Protein Eng. 1994, 7, 309-316
-
(1994)
Protein Eng.
, vol.7
, pp. 309-316
-
-
Gustchina, A.1
Sansom, C.2
Prevost, M.3
Richelle, J.4
Wodak, S.Y.5
Wlodawer, A.6
Weber, I.T.7
-
109
-
-
33644527925
-
Thermodynamics of Buried Water Clusters at a Protein-Ligand Binding Interface
-
Li, Z.; Lazaridis, T. Thermodynamics of Buried Water Clusters at a Protein-Ligand Binding Interface J. Phys. Chem. B 2006, 110, 1464-1475
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 1464-1475
-
-
Li, Z.1
Lazaridis, T.2
-
110
-
-
33645106609
-
Mapping the Energetics of Water-Protein and Water-Ligand Interactions with the "natural" HINT forcefield: Predictive tools for characterizing the roles of water in biomolecules
-
Amadasi, A.; Spyrakis, F.; Cozzini, P.; Abraham, D. J.; Kellogg, G. E.; Mozzarelli, A. Mapping the Energetics of Water-Protein and Water-Ligand Interactions with the "natural" HINT forcefield: predictive tools for characterizing the roles of water in biomolecules J. Mol. Biol. 2006, 358, 289-309
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 289-309
-
-
Amadasi, A.1
Spyrakis, F.2
Cozzini, P.3
Abraham, D.J.4
Kellogg, G.E.5
Mozzarelli, A.6
-
111
-
-
0031058541
-
The statistical-thermodynamic basis for computation of binding affinities: A critical review
-
Gilson, M. K.; Given, J. A.; Bush, B. L.; McCammon, J. A. The Statistical-Thermodynamic Basis for Computation of Binding Affinities: A Critical Review Biophys. J. 1997, 72, 1047-1069 (Pubitemid 27113632)
-
(1997)
Biophysical Journal
, vol.72
, Issue.3
, pp. 1047-1069
-
-
Gilson, M.K.1
Given, J.A.2
Bush, B.L.3
McCammon, J.A.4
-
112
-
-
65249124122
-
Computations of Standard Binding Free Energies with Molecular Dynamics Simulations
-
Deng, Y.; Roux, B. Computations of Standard Binding Free Energies with Molecular Dynamics Simulations J. Phys. Chem. B 2009, 113, 2234-2246
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 2234-2246
-
-
Deng, Y.1
Roux, B.2
-
113
-
-
0027321958
-
Absolute and relative binding free energy calculations of the interaction of biotin and its analogs with streptavidin using molecular dynamics/free energy perturbation approaches
-
Miyamoto, S.; Kollman, P. A. Absolute and Relative Binding Free Energy Calculations of the Interaction of Biotin and Its Analogs with Streptavidin Using Molecular Dynamics/Free Energy Perturbation Approaches Proteins: Struct., Funct., Bioinf. 1993, 16, 226-245 (Pubitemid 23183300)
-
(1993)
Proteins: Structure, Function and Genetics
, vol.16
, Issue.3
, pp. 226-245
-
-
Miyamoto, S.1
Kollman, P.A.2
-
114
-
-
0344796204
-
Ion-Water Interaction Potentials Derived from Free Energy Perturbation Simulations
-
Aaqvist, J. Ion-Water Interaction Potentials Derived from Free Energy Perturbation Simulations J. Phys. Chem. 1990, 94, 8021-8024
-
(1990)
J. Phys. Chem.
, vol.94
, pp. 8021-8024
-
-
Aaqvist, J.1
-
115
-
-
0001563899
-
Free Energy of Ionic Hydration: Analysis of a Thermodynamic Integration Technique to Evaluate Free Energy Differences by Molecular Dynamics Simulations
-
Straatsma, T.; Berendsen, H. Free Energy of Ionic Hydration: Analysis of a Thermodynamic Integration Technique To Evaluate Free Energy Differences by Molecular Dynamics Simulations J. Chem. Phys. 1988, 89, 5876-5886
-
(1988)
J. Chem. Phys.
, vol.89
, pp. 5876-5886
-
-
Straatsma, T.1
Berendsen, H.2
-
116
-
-
0037234043
-
Free energy calculations for theophylline binding to an RNA aptamer: Comparison of MM-PBSA and thermodynamic integration methods
-
DOI 10.1002/bip.10270
-
Gouda, H.; Kuntz, I. D.; Case, D. A.; Kollman, P. A. Free Energy Calculations for Theophylline Binding to an RNA Aptamer: Comparison of MM-PBSA and Thermodynamic Integration Methods Biopolymers 2003, 68, 16-34 (Pubitemid 36098305)
-
(2003)
Biopolymers
, vol.68
, Issue.1
, pp. 16-34
-
-
Gouda, H.1
Kuntz, I.D.2
Case, D.A.3
Kollman, P.A.4
-
117
-
-
70349683018
-
Prediction of the Water Content in Protein Binding Sites
-
Michel, J.; Tirado-Rives, J.; Jorgensen, W. L. Prediction of the Water Content in Protein Binding Sites J. Phys. Chem. B 2009, 113, 13337-13346
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 13337-13346
-
-
Michel, J.1
Tirado-Rives, J.2
Jorgensen, W.L.3
-
118
-
-
70350315092
-
Energetics of Displacing Water Molecules from Protein Binding Sites: Consequences for Ligand Optimization
-
Michel, J.; Tirado-Rives, J.; Jorgensen, W. L. Energetics of Displacing Water Molecules from Protein Binding Sites: Consequences for Ligand Optimization J. Am. Chem. Soc. 2009, 131, 15403-15411
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 15403-15411
-
-
Michel, J.1
Tirado-Rives, J.2
Jorgensen, W.L.3
-
119
-
-
0029043773
-
Determination of the Differential Effects of Hydrogen Bonding and Water Release on the Binding of FK506 to Native and Tyr82→Phe82 FKBP-12 Proteins Using Free Energy Simulations
-
Pearlman, D. A.; Connelly, P. R. Determination of the Differential Effects of Hydrogen Bonding and Water Release on the Binding of FK506 to Native and Tyr82→Phe82 FKBP-12 Proteins Using Free Energy Simulations J. Mol. Biol. 1995, 248, 696-717
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 696-717
-
-
Pearlman, D.A.1
Connelly, P.R.2
-
120
-
-
0001700714
-
Inhomogeneous fluid approach to solvation thermodynamics. 1. Theory
-
Lazaridis, T. Inhomogeneous Fluid Approach to Solvation Thermodynamics. 1. Theory J. Phys. Chem. B 1998, 102, 3531-3541 (Pubitemid 128576682)
-
(1998)
Journal of Physical Chemistry B
, vol.102
, Issue.18
, pp. 3531-3541
-
-
Lazaridis, T.1
-
121
-
-
0037533880
-
Thermodynamic contributions of the ordered water molecule in HIV-1 protease
-
DOI 10.1021/ja0299203
-
Li, Z.; Lazaridis, T. Thermodynamics of the Ordered Water Molecule in HIV-1 Protease J. Am. Chem. Soc. 2003, 125, 6636-6637 (Pubitemid 36667440)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.22
, pp. 6636-6637
-
-
Li, Z.1
Lazaridis, T.2
-
122
-
-
80755150215
-
Thermodynamic Properties of Water Molecules at a Protein-Protein Interaction Surface
-
Huggins, D. J.; Marsh, M.; Payne, M. C. Thermodynamic Properties of Water Molecules at a Protein-Protein Interaction Surface J. Chem. Theory Comput. 2011, 7, 3514-3522
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 3514-3522
-
-
Huggins, D.J.1
Marsh, M.2
Payne, M.C.3
-
123
-
-
0033637521
-
The Dynamics of Protein Hydration Water: A Quantitative Comparison of Molecular Dynamics Simulations and Neutron-Scattering Experiments
-
Tarek, M.; Tobias, D. J. The Dynamics of Protein Hydration Water: A Quantitative Comparison of Molecular Dynamics Simulations and Neutron-Scattering Experiments Biophys. J. 2000, 79, 3244-3257
-
(2000)
Biophys. J.
, vol.79
, pp. 3244-3257
-
-
Tarek, M.1
Tobias, D.J.2
-
124
-
-
0035855917
-
Ordered water and ligand mobility in the HIV-1 integrase-5CITEP complex: A molecular dynamics study
-
DOI 10.1021/jm010205y
-
Ni, H.; Sotriffer, C. A.; McCammon, J. A. Ordered Water and Ligand Mobility in the HIV-1 Integrase-5CITEP Complex: A Molecular Dynamics Study J. Med. Chem. 2001, 44, 3043-3047 (Pubitemid 32862333)
-
(2001)
Journal of Medicinal Chemistry
, vol.44
, Issue.19
, pp. 3043-3047
-
-
Ni, H.1
Sotriffer, C.A.2
McCammon, J.A.3
-
125
-
-
0041821388
-
Dehydron: A structurally encoded signal for protein interaction
-
Fernández, A.; Scott, R. Dehydron: A Structurally Encoded Signal for Protein Interaction Biophys. J. 2003, 85, 1914-1928 (Pubitemid 37052271)
-
(2003)
Biophysical Journal
, vol.85
, Issue.3
, pp. 1914-1928
-
-
Fernandez, A.1
Scott, R.2
-
126
-
-
36849056267
-
An anticancer C-Kit kinase inhibitor is reengineered to make it more active and less cardiotoxic
-
DOI 10.1172/JCI32373
-
Fernández, A.; Sanguino, A.; Peng, Z.; Ozturk, E.; Chen, J.; Crespo, A.; Wulf, S.; Shavrin, A.; Qin, C.; Ma, J. An Anticancer C-Kit Kinase Inhibitor Is Reengineered To Make It More Active and Less Cardiotoxic J. Clin. Invest. 2007, 117, 4044-4054 (Pubitemid 350224113)
-
(2007)
Journal of Clinical Investigation
, vol.117
, Issue.12
, pp. 4044-4054
-
-
Fernandez, A.1
Sanguino, A.2
Peng, Z.3
Ozturk, E.4
Chen, J.5
Crespo, A.6
Wulf, S.7
Shavrin, A.8
Qin, C.9
Ma, J.10
Trent, J.11
Lin, Y.12
Han, H.-D.13
Mangala, L.S.14
Bankson, J.A.15
Gelovani, J.16
Samarel, A.17
Bornmann, W.18
Sood, A.K.19
Lopez-Berestein, G.20
more..
-
127
-
-
33846524439
-
Motifs for molecular recognition exploiting hydrophobic enclosure in protein-ligand binding
-
DOI 10.1073/pnas.0610202104
-
Young, T.; Abel, R.; Kim, B.; Berne, B. J.; Friesner, R. A. Motifs for Molecular Recognition Exploiting Hydrophobic Enclosure in Protein-Ligand Binding Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 808-813 (Pubitemid 46154692)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.3
, pp. 808-813
-
-
Young, T.1
Abel, R.2
Kim, B.3
Berne, B.J.4
Friesner, R.A.5
-
128
-
-
40949163431
-
Role of the active-site solvent in the thermodynamics of factor Xa ligand binding
-
DOI 10.1021/ja0771033
-
Abel, R.; Young, T.; Farid, R.; Berne, B. J.; Friesner, R. A. Role of the Active-Site Solvent in the Thermodynamics of Factor Xa Ligand Binding J. Am. Chem. Soc. 2008, 130, 2817-2831 (Pubitemid 351416242)
-
(2008)
Journal of the American Chemical Society
, vol.130
, Issue.9
, pp. 2817-2831
-
-
Abel, R.1
Young, T.2
Farid, R.3
Berne, B.J.4
Friesner, R.A.5
-
129
-
-
78049437107
-
Computational Analysis of Phosphopeptide Binding to the Polo-Box Domain of the Mitotic Kinase PLK1 Using Molecular Dynamics Simulation
-
Huggins, D. J.; McKenzie, G. J.; Robinson, D. D.; Narváez, A. J.; Hardwick, B.; Roberts-Thomson, M.; Venkitaraman, A. R.; Grant, G. H.; Payne, M. C. Computational Analysis of Phosphopeptide Binding to the Polo-Box Domain of the Mitotic Kinase PLK1 Using Molecular Dynamics Simulation PLoS Comput. Biol. 2010, 6, e1000880
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. 1000880
-
-
Huggins, D.J.1
McKenzie, G.J.2
Robinson, D.D.3
Narváez, A.J.4
Hardwick, B.5
Roberts-Thomson, M.6
Venkitaraman, A.R.7
Grant, G.H.8
Payne, M.C.9
-
130
-
-
67749099405
-
High Energy Water Sites Determine Peptide Binding Affinity and Specificity of PDZ Domains
-
Beuming, T.; Farid, R.; Sherman, W. High Energy Water Sites Determine Peptide Binding Affinity and Specificity of PDZ Domains Protein Sci. 2009, 18, 1609-1619
-
(2009)
Protein Sci.
, vol.18
, pp. 1609-1619
-
-
Beuming, T.1
Farid, R.2
Sherman, W.3
-
131
-
-
77953967480
-
A Highly Selective Oligopeptide Binding Protein from the Archaeon Sulfolobus Solfataricus
-
Gogliettino, M.; Balestrieri, M.; Pocsfalvi, G.; Fiume, I.; Natale, L.; Rossi, M.; Palmieri, G. A Highly Selective Oligopeptide Binding Protein from the Archaeon Sulfolobus Solfataricus J. Bacteriol. 2010, 192, 3123-3131
-
(2010)
J. Bacteriol.
, vol.192
, pp. 3123-3131
-
-
Gogliettino, M.1
Balestrieri, M.2
Pocsfalvi, G.3
Fiume, I.4
Natale, L.5
Rossi, M.6
Palmieri, G.7
-
132
-
-
0030471364
-
The role of water in sequence-independent ligand binding by an oligopeptide transporter protein
-
DOI 10.1038/nsb1296-998
-
Tame, J. R. H.; Sleigh, S. H.; Wilkinson, A. J.; Ladbury, J. E. The Role of Water in Sequence-Independent Ligand Binding by an Oligopeptide Transporter Protein Nat. Struct. Mol. Biol. 1996, 3, 998-1001 (Pubitemid 27014627)
-
(1996)
Nature Structural Biology
, vol.3
, Issue.12
, pp. 998-1001
-
-
Tame, J.R.H.1
Sleigh, S.H.2
Wilkinson, A.J.3
Ladbury, J.E.4
-
133
-
-
0034635345
-
Specificity and Interactions of the Protein OppA: Partitioning Solvent Binding Effects Using Mass Spectrometry
-
Rostom, A. A.; Tame, J. R. H.; Ladbury, J. E.; Robinson, C. V. Specificity and Interactions of the Protein OppA: Partitioning Solvent Binding Effects Using Mass Spectrometry J. Mol. Biol. 2000, 296, 269-279
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 269-279
-
-
Rostom, A.A.1
Tame, J.R.H.2
Ladbury, J.E.3
Robinson, C.V.4
-
134
-
-
0030855775
-
Peptide binding in OppA, the crystal structures of the periplasmic oligopeptide binding protein in the unliganded form and in complex with lysyllysine
-
DOI 10.1021/bi970457u
-
Sleigh, S. H.; Jeremy, R.; Dodson, E. J.; Wilkinson, A. J. Peptide Binding in OppA, the Crystal Structures of the Periplasmic Oligopeptide Binding Protein in the Unliganded Form and in Complex with Lysyllysine Biochemistry 1997, 36, 9747-9758 (Pubitemid 27364685)
-
(1997)
Biochemistry
, vol.36
, Issue.32
, pp. 9747-9758
-
-
Sleigh, S.H.1
Tame, J.R.H.2
Dodson, E.J.3
Wilkinson, A.J.4
-
135
-
-
84857425612
-
Why OppA Protein Can Bind Sequence-Independent Peptides? A Combination of QM/MM, PB/SA, and Structure-Based QSAR Analyses
-
Tian, F.; Yang, L.; Lv, F.; Luo, X.; Pan, Y. Why OppA Protein Can Bind Sequence-Independent Peptides? A Combination of QM/MM, PB/SA, and Structure-Based QSAR Analyses Amino Acids 2010, 1-11
-
(2010)
Amino Acids
, pp. 1-11
-
-
Tian, F.1
Yang, L.2
Lv, F.3
Luo, X.4
Pan, Y.5
-
136
-
-
33846865550
-
Role of Water Molecules for Binding Inhibitors in the SH2 Domain of Grb2: A Molecular Dynamics Study
-
Leroux, V.; Gresh, N.; Liu, W. Q.; Garbay, C.; Maigret, B. Role of Water Molecules for Binding Inhibitors in the SH2 Domain of Grb2: A Molecular Dynamics Study J. Mol. Struct. 2007, 806, 51-66
-
(2007)
J. Mol. Struct.
, vol.806
, pp. 51-66
-
-
Leroux, V.1
Gresh, N.2
Liu, W.Q.3
Garbay, C.4
Maigret, B.5
-
137
-
-
33745066058
-
The role of water in computational and experimental derivation of binding thermodynamics in SH2 domains
-
DOI 10.1111/j.1747-0285.2005.00315.x
-
Geroult, S.; Virdee, S.; Waksman, G. The Role of Water in Computational and Experimental Derivation of Binding Thermodynamics in SH2 Domains Chem. Biol. Drug Des. 2006, 67, 38-45 (Pubitemid 43881386)
-
(2006)
Chemical Biology and Drug Design
, vol.67
, Issue.1
, pp. 38-45
-
-
Geroult, S.1
Virdee, S.2
Waksman, G.3
-
138
-
-
0032311808
-
Prediction of binding energetics from structure using empirical parameterization
-
DOI 10.1016/S0076-6879(98)95045-5
-
Baker, B.; Murphy, K. Prediction of Binding Energetics from Structure Using Empirical Parameterization Methods Enzymol. 1998, 295, 294-315 (Pubitemid 29349919)
-
(1998)
Methods in Enzymology
, vol.295
, pp. 294-315
-
-
Baker, B.M.1
Murphy, K.P.2
-
139
-
-
26444586139
-
Modeling water molecules in protein-ligand docking using GOLD
-
DOI 10.1021/jm050543p
-
Verdonk, M. L.; Chessari, G.; Cole, J. C.; Hartshorn, M. J.; Murray, C. W.; Nissink, J. W. M.; Taylor, R. D.; Taylor, R. Modeling Water Molecules in Protein-Ligand Docking Using Gold J. Med. Chem. 2005, 48, 6504-6515 (Pubitemid 41429002)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.20
, pp. 6504-6515
-
-
Verdonk, M.L.1
Chessari, G.2
Cole, J.C.3
Hartshorn, M.J.4
Murray, C.W.5
Nissink, J.W.M.6
Taylor, R.D.7
Taylor, R.8
-
140
-
-
6344245774
-
Incorporating protein flexibility in structure-based drug discovery: Using HIV-1 protease as a test case
-
DOI 10.1021/ja0469378
-
Meagher, K. L.; Carlson, H. A. Incorporating Protein Flexibility in Structure-Based Drug Discovery: Using HIV-1 Protease as a Test Case J. Am. Chem. Soc. 2004, 126, 13276-13281 (Pubitemid 39386291)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.41
, pp. 13276-13281
-
-
Meagher, K.L.1
Carlson, H.A.2
-
141
-
-
3543017313
-
Allosteric inhibition of protein tyrosine phosphatase 1B
-
DOI 10.1038/nsmb803
-
Wiesmann, C.; Barr, K. J.; Kung, J.; Zhu, J.; Erlanson, D. A.; Shen, W.; Fahr, B. J.; Zhong, M.; Taylor, L.; Randal, M. Allosteric Inhibition of Protein Tyrosine Phosphatase 1b Nat. Struct. Mol. Biol. 2004, 11, 730-737 (Pubitemid 39014498)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.8
, pp. 730-737
-
-
Wiesmann, C.1
Barr, K.J.2
Kung, J.3
Zhu, J.4
Erlanson, D.A.5
Shen, W.6
Fahr, B.J.7
Zhong, M.8
Taylor, L.9
Randall, M.10
McDowell, R.S.11
Hansen, S.K.12
-
142
-
-
18344395134
-
Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site
-
DOI 10.1038/nsb770
-
Pargellis, C.; Tong, L.; Churchill, L.; Cirillo, P. F.; Gilmore, T.; Graham, A. G.; Grob, P. M.; Hickey, E. R.; Moss, N.; Pav, S. Inhibition of p38 Map Kinase by Utilizing a Novel Allosteric Binding Site Nat. Struct. Mol. Biol. 2002, 9, 268-272 (Pubitemid 34289898)
-
(2002)
Nature Structural Biology
, vol.9
, Issue.4
, pp. 268-272
-
-
Pargellis, C.1
Tong, L.2
Churchill, L.3
Cirillo, P.F.4
Gilmore, T.5
Graham, A.G.6
Grob, P.M.7
Hickey, E.R.8
Moss, N.9
Pav, S.10
Regan, J.11
-
143
-
-
33847122495
-
Allosteric modulation of G protein-coupled receptors
-
DOI 10.1146/annurev.pharmtox.47.120505.105159
-
May, L. T.; Leach, K.; Sexton, P. M.; Christopoulos, A. Allosteric Modulation of G Protein-Coupled Receptors Annu. Rev. Pharmacol. Toxicol. 2007, 47, 1-51 (Pubitemid 46277033)
-
(2007)
Annual Review of Pharmacology and Toxicology
, vol.47
, pp. 1-51
-
-
May, L.T.1
Leach, K.2
Sexton, P.M.3
Christopoulos, A.4
-
144
-
-
79955038588
-
Turning a Protein Kinase on or off from a Single Allosteric Site via Disulfide Trapping
-
Sadowsky, J. D.; Burlingame, M. A.; Wolan, D. W.; McClendon, C. L.; Jacobson, M. P.; Wells, J. A. Turning a Protein Kinase On or Off from a Single Allosteric Site via Disulfide Trapping Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 6056-6061
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 6056-6061
-
-
Sadowsky, J.D.1
Burlingame, M.A.2
Wolan, D.W.3
McClendon, C.L.4
Jacobson, M.P.5
Wells, J.A.6
-
145
-
-
33745880692
-
Computational Sampling of a Cryptic Drug Binding Site in a Protein Receptor: Explicit Solvent Molecular Dynamics and Inhibitor Docking to p38 MAP Kinase
-
DOI 10.1016/j.jmb.2006.03.021, PII S002228360600341X
-
Frembgen-Kesner, T.; Elcock, A. H. Computational Sampling of a Cryptic Drug Binding Site in a Protein Receptor: Explicit Solvent Molecular Dynamics and Inhibitor Docking to p38 Map Kinase J. Mol. Biol. 2006, 359, 202-214 (Pubitemid 44287824)
-
(2006)
Journal of Molecular Biology
, vol.359
, Issue.1
, pp. 202-214
-
-
Frembgen-Kesner, T.1
Elcock, A.H.2
-
146
-
-
40549107133
-
Conformational selection in silico: Loop latching motions and ligand binding in enzymes
-
DOI 10.1002/prot.21666
-
Wong, S.; Jacobson, M. P. Conformational Selection in Silico: Loop Latching Motions and Ligand Binding in Enzymes Proteins 2008, 71, 153-164 (Pubitemid 351358599)
-
(2008)
Proteins: Structure, Function and Genetics
, vol.71
, Issue.1
, pp. 153-164
-
-
Wong, S.1
Jacobson, M.P.2
-
147
-
-
70350378411
-
Docking Flexible Peptide to Flexible Protein by Molecular Dynamics Using Two Implicit-Solvent Models: An Evaluation in Protein Kinase and Phosphatase Systems
-
Huang, Z.; Wong, C. F. Docking Flexible Peptide to Flexible Protein by Molecular Dynamics Using Two Implicit-Solvent Models: An Evaluation in Protein Kinase and Phosphatase Systems J. Phys. Chem. B 2009, 113, 14343-14354
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 14343-14354
-
-
Huang, Z.1
Wong, C.F.2
-
148
-
-
34547583152
-
Transient pockets on protein surfaces involved in protein-protein interaction
-
DOI 10.1021/jm070095g
-
Eyrisch, S.; Helms, V. Transient Pockets on Protein Surfaces Involved in Protein-Protein Interaction J. Med. Chem. 2007, 50, 3457-3464 (Pubitemid 47195455)
-
(2007)
Journal of Medicinal Chemistry
, vol.50
, Issue.15
, pp. 3457-3464
-
-
Eyrisch, S.1
Helms, V.2
-
149
-
-
41949132326
-
Overcoming the Inadequacies or Limitations of Experimental Structures as Drug Targets by Using Computational Modeling Tools and Molecular Dynamics Simulations
-
Marco, E.; Gago, F. Overcoming the Inadequacies or Limitations of Experimental Structures as Drug Targets by Using Computational Modeling Tools and Molecular Dynamics Simulations ChemMedChem 2007, 2, 1388-1401
-
(2007)
ChemMedChem
, vol.2
, pp. 1388-1401
-
-
Marco, E.1
Gago, F.2
-
150
-
-
77951484077
-
Evaluating the Substrate-Envelope Hypothesis: Structural Analysis of Novel HIV-1 Protease Inhibitors Designed to Be Robust against Drug Resistance
-
Nalam, M. N. L.; Ali, A.; Altman, M. D.; Reddy, G.; Chellappan, S.; Kairys, V.; Ozen, A.; Cao, H.; Gilson, M. K.; Tidor, B. Evaluating the Substrate-Envelope Hypothesis: Structural Analysis of Novel HIV-1 Protease Inhibitors Designed To Be Robust against Drug Resistance J. Virol. 2010, 84, 5368-5378
-
(2010)
J. Virol.
, vol.84
, pp. 5368-5378
-
-
Nalam, M.N.L.1
Ali, A.2
Altman, M.D.3
Reddy, G.4
Chellappan, S.5
Kairys, V.6
Ozen, A.7
Cao, H.8
Gilson, M.K.9
Tidor, B.10
-
151
-
-
34250794023
-
Evaluation of the substrate envelope hypothesis for inhibitors of HIV-1 protease
-
DOI 10.1002/prot.21431
-
Chellappan, S.; Kairys, V.; Fernandes, M. X.; Schiffer, C.; Gilson, M. K. Evaluation of the Substrate Envelope Hypothesis for Inhibitors of HIV 1 Protease Proteins: Struct., Funct., Bioinf. 2007, 68, 561-567 (Pubitemid 46981948)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.68
, Issue.2
, pp. 561-567
-
-
Chellappan, S.1
Kairys, V.2
Fernandes, M.X.3
Schiffer, C.4
Gilson, M.K.5
-
152
-
-
5444247213
-
Combating susceptibility to drug resistance: Lessons from HIV-1 protease
-
DOI 10.1016/j.chembiol.2004.08.010, PII S1074552104002431
-
King, N. M.; Prabu-Jeyabalan, M.; Nalivaika, E. A.; Schiffer, C. A. Combating Susceptibility to Drug Resistance: Lessons from HIV-1 Protease Chem. Biol. 2004, 11, 1333-1338 (Pubitemid 39351371)
-
(2004)
Chemistry and Biology
, vol.11
, Issue.10
, pp. 1333-1338
-
-
King, N.M.1
Prabu-Jeyabalan, M.2
Nalivaika, E.A.3
Schiffer, C.A.4
-
153
-
-
78650481557
-
Drug Resistance against HCV Ns3/4a Inhibitors Is Defined by the Balance of Substrate Recognition versus Inhibitor Binding
-
Romano, K. P.; Ali, A.; Royer, W. E.; Schiffer, C. A. Drug Resistance against HCV Ns3/4a Inhibitors Is Defined by the Balance of Substrate Recognition versus Inhibitor Binding Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 20986-20991
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 20986-20991
-
-
Romano, K.P.1
Ali, A.2
Royer, W.E.3
Schiffer, C.A.4
-
154
-
-
40049110714
-
Carrier-mediated cellular uptake of pharmaceutical drugs: An exception or the rule?
-
DOI 10.1038/nrd2438, PII NRD2438
-
Dobson, P. D.; Kell, D. B. Carrier-Mediated Cellular Uptake of Pharmaceutical Drugs: An Exception or the Rule? Nat. Rev. Drug Discovery 2008, 7, 205-220 (Pubitemid 351321232)
-
(2008)
Nature Reviews Drug Discovery
, vol.7
, Issue.3
, pp. 205-220
-
-
Dobson, P.D.1
Kell, D.B.2
-
155
-
-
4043163371
-
Transporter-mediated drug delivery: Recent progress and experimental approaches
-
DOI 10.1016/S1359-6446(04)03198-8, PII S1359644604031988
-
Sai, Y.; Tsuji, A. Transporter-Mediated Drug Delivery: Recent Progress and Experimental Approaches Drug Discovery Today 2004, 9, 712-720 (Pubitemid 39070284)
-
(2004)
Drug Discovery Today
, vol.9
, Issue.16
, pp. 712-720
-
-
Sai, Y.1
Tsuji, A.2
-
156
-
-
0033756459
-
Transporter-Mediated Permeation of Drugs across the Blood-Brain Barrier
-
Tamai, I.; Tsuji, A. Transporter-Mediated Permeation of Drugs across the Blood-Brain Barrier J. Pharm. Sci. 2000, 89, 1371-1388
-
(2000)
J. Pharm. Sci.
, vol.89
, pp. 1371-1388
-
-
Tamai, I.1
Tsuji, A.2
-
157
-
-
33747877258
-
Distribution characteristics of orally administered olamufloxacin, a newly synthesized fluoroquinolone antibacterial, in lung epithelial lining fluid and alveolar macrophage in rats
-
DOI 10.1016/j.ejpb.2006.04.009, PII S0939641106001536
-
Sun, J.; Deguchi, Y.; Tauchi, Y.; He, Z. G.; Cheng, G.; Morimoto, K. Distribution Characteristics of Orally Administered Olamufloxacin, a Newly Synthesized Fluoroquinolone Antibacterial, in Lung Epithelial Lining Fluid and Alveolar Macrophage in Rats Eur. J. Pharm. Biopharm. 2006, 64, 238-245 (Pubitemid 44292000)
-
(2006)
European Journal of Pharmaceutics and Biopharmaceutics
, vol.64
, Issue.2
, pp. 238-245
-
-
Sun, J.1
Deguchi, Y.2
Tauchi, Y.3
He, Z.4
Cheng, G.5
Morimoto, K.6
-
158
-
-
0042468096
-
Impact of drug transporter studies on drug discovery and development
-
DOI 10.1124/pr.55.3.1
-
Mizuno, N.; Niwa, T.; Yotsumoto, Y.; Sugiyama, Y. Impact of Drug Transporter Studies on Drug Discovery and Development Pharmacol. Rev. 2003, 55, 425-461 (Pubitemid 37013212)
-
(2003)
Pharmacological Reviews
, vol.55
, Issue.3
, pp. 425-461
-
-
Mizuno, N.1
Niwa, T.2
Yotsumoto, Y.3
Sugiyama, Y.4
-
159
-
-
79959833862
-
Predicting Binding to P-Glycoprotein by Flexible Receptor Docking
-
Dolghih, E.; Bryant, C.; Renslo, A. R.; Jacobson, M. P. Predicting Binding to P-Glycoprotein by Flexible Receptor Docking PLoS Comput. Biol. 2011, 7, e1002083
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. 1002083
-
-
Dolghih, E.1
Bryant, C.2
Renslo, A.R.3
Jacobson, M.P.4
-
160
-
-
38949188650
-
Improving therapeutic properties of protein drugs through alteration of intracellular trafficking pathways
-
DOI 10.1021/bp070080b
-
Lao, B. J.; Kamei, D. T. Improving Therapeutic Properties of Protein Drugs through Alteration of Intracellular Trafficking Pathways Biotechnol. Prog. 2008, 24, 2-7 (Pubitemid 351231243)
-
(2008)
Biotechnology Progress
, vol.24
, Issue.1
, pp. 2-7
-
-
Lao, B.J.1
Kamei, D.T.2
-
161
-
-
0036889760
-
Targeted drug delivery via the transferrin receptor-mediated endocytosis pathway
-
DOI 10.1124/pr.54.4.561
-
Qian, Z. M.; Li, H. Y.; Sun, H. Z.; Ho, K. Targeted Drug Delivery via the Transferrin Receptor-Mediated Endocytosis Pathway Pharmacol. Rev. 2002, 54, 561-587 (Pubitemid 35351196)
-
(2002)
Pharmacological Reviews
, vol.54
, Issue.4
, pp. 561-587
-
-
Qian, Z.M.1
Li, H.2
Sun, H.3
Ho, K.4
-
162
-
-
33847240145
-
Intracellular pH Sensors: Design Principles and Functional Significance
-
Srivastava, J.; Barber, D. L.; Jacobson, M. P. Intracellular pH Sensors: Design Principles and Functional Significance Physiology 2007, 22, 30-39
-
(2007)
Physiology
, vol.22
, pp. 30-39
-
-
Srivastava, J.1
Barber, D.L.2
Jacobson, M.P.3
-
163
-
-
2942590732
-
Exploiting tumour hypoxia in cancer treatment
-
Brown, J. M.; William, W. R. Exploiting Tumour Hypoxia in Cancer Treatment Nat. Rev. Cancer 2004, 4, 437-447 (Pubitemid 38745529)
-
(2004)
Nature Reviews Cancer
, vol.4
, Issue.6
, pp. 437-447
-
-
Brown, J.M.1
Wilson, W.R.2
-
164
-
-
33751505207
-
Sr-4233, a New Bioreductive Cytotoxic Agent with High Selective Toxicity for Hypoxic Mammalian-Cells
-
Brown, J. M.; Zeman, E. M.; Baker, M. A.; Taylor, Y. C.; Lemmon, M. J.; Hirst, V. K.; Lee, W. W. Sr-4233, a New Bioreductive Cytotoxic Agent with High Selective Toxicity for Hypoxic Mammalian-Cells Proc. Am. Assoc. Cancer Res. 1986, 27, 285-285
-
(1986)
Proc. Am. Assoc. Cancer Res.
, vol.27
, pp. 285-285
-
-
Brown, J.M.1
Zeman, E.M.2
Baker, M.A.3
Taylor, Y.C.4
Lemmon, M.J.5
Hirst, V.K.6
Lee, W.W.7
-
165
-
-
0034543132
-
AQ4N: A new approach to hypoxia-activated cancer chemotherapy
-
DOI 10.1054/bjoc.2000.1564
-
Patterson, L. H.; McKeown, S. R. Aq4n: A New Approach to Hypoxia-Activated Cancer Chemotherapy Br. J. Cancer 2000, 83, 1589-1593 (Pubitemid 32001698)
-
(2000)
British Journal of Cancer
, vol.83
, Issue.12
, pp. 1589-1593
-
-
Patterson, L.H.1
McKeown, S.R.2
-
166
-
-
77956241061
-
Efficient Hypoxic Activation of the Anticancer Agent Aq4n by Cyp2s1 and CYP2W1
-
Nishida, C. R.; Lee, M.; de Montellano, P. R. O. Efficient Hypoxic Activation of the Anticancer Agent Aq4n by Cyp2s1 and CYP2W1 Mol. Pharmacol. 2010, 78, 497-502
-
(2010)
Mol. Pharmacol.
, vol.78
, pp. 497-502
-
-
Nishida, C.R.1
Lee, M.2
De Montellano, P.R.O.3
-
167
-
-
39749101689
-
Hypoxia-selective targeting by the bioreductive prodrug AQ4N in patients with solid tumors: Results of a phase I study
-
DOI 10.1158/1078-0432.CCR-07-4020
-
Albertella, M. R.; Loadman, P. M.; Jones, P. H.; Phillips, R. M.; Rarnpling, R.; Burnet, N.; Alcock, C.; Anthoney, A.; Vjaters, E.; Dunk, C. R.; Harris, P. A.; Wong, A.; Lalani, A. S.; Twelves, C. J. Hypoxia-Selective Targeting by the Bioreductive Prodrug Aq4n in Patients with Solid Tumors: Results of a Phase I Study Clin. Cancer. Res. 2008, 14, 1096-1104 (Pubitemid 351302556)
-
(2008)
Clinical Cancer Research
, vol.14
, Issue.4
, pp. 1096-1104
-
-
Albertella, M.R.1
Loadman, P.M.2
Jones, P.H.3
Phillips, R.M.4
Rampling, R.5
Burnet, N.6
Alcock, C.7
Anthoney, A.8
Vjaters, E.9
Dunk, C.R.10
Harris, P.A.11
Wong, A.12
Lalani, A.S.13
Twelves, C.J.14
-
168
-
-
33747145206
-
Targeting heat shock proteins on cancer cells: Selection, characterization, and cell-penetrating properties of a peptidic GRP78 ligand
-
DOI 10.1021/bi060264j
-
Kim, Y.; Lillo, A. M.; Steiniger, S. C. J.; Liu, Y.; Ballatore, C.; Anichini, A.; Mortarini, R.; Kaufmann, G. F.; Zhou, B.; Felding-Habermann, B.; Janda, K. D. Targeting Heat Shock Proteins on Cancer Cells: Selection, Characterization, and Cell-Penetrating Properties of a Peptidic Grp78 Ligand Biochemistry 2006, 45, 9434-9444 (Pubitemid 44223248)
-
(2006)
Biochemistry
, vol.45
, Issue.31
, pp. 9434-9444
-
-
Kim, Y.1
Lillo, A.M.2
Steiniger, S.C.J.3
Liu, Y.4
Ballatore, C.5
Anichini, A.6
Mortarini, R.7
Kaufmann, G.F.8
Zhou, B.9
Felding-Habermann, B.10
Janda, K.D.11
-
169
-
-
34250847014
-
Mechanistic studies of a peptidic GRP78 ligand for cancer cell-specific drug delivery
-
DOI 10.1021/mp060122j
-
Liu, Y.; Steiniger, S. C. J.; Kim, Y.; Kaufmann, G. F.; Felding-Habermann, B.; Janda, K. D. Mechanistic Studies of a Peptidic Grp78 Ligand for Cancer Cell-Specific Drug Delivery Mol. Pharmaceutics 2007, 4, 435-447 (Pubitemid 46983958)
-
(2007)
Molecular Pharmaceutics
, vol.4
, Issue.3
, pp. 435-447
-
-
Liu, Y.1
Steiniger, S.C.J.2
Kim, Y.3
Kaufmann, G.F.4
Felding-Habermann, B.5
Janda, K.D.6
-
170
-
-
39849094180
-
A cell-penetrating peptidic GRP78 ligand for tumor cell-specific prodrug therapy
-
DOI 10.1016/j.bmcl.2008.01.060, PII S0960894X08000772
-
Yoneda, Y.; Steiniger, S. C. J.; Capkova, K.; Mee, J. M.; Liu, Y.; Kaufmann, G. F.; Janda, K. D. A Cell-Penetrating Peptidic Grp78 Ligand for Tumor Cell-Specific Prodrug Therapy Bioorg. Med. Chem. Lett. 2008, 18, 1632-1636 (Pubitemid 351318249)
-
(2008)
Bioorganic and Medicinal Chemistry Letters
, vol.18
, Issue.5
, pp. 1632-1636
-
-
Yoneda, Y.1
Steiniger, S.C.J.2
Capkova, K.3
Mee, J.M.4
Liu, Y.5
Kaufmann, G.F.6
Janda, K.D.7
-
171
-
-
58449086357
-
A Novel Peptide Enhances Therapeutic Efficacy of Liposomal Anti-Cancer Drugs in Mice Models of Human Lung Cancer
-
Chang, D. K.; Lin, C. T.; Wu, C. H.; Wu, H. C. A Novel Peptide Enhances Therapeutic Efficacy of Liposomal Anti-Cancer Drugs in Mice Models of Human Lung Cancer PLoS One 2009, 4, e4171
-
(2009)
PLoS One
, vol.4
, pp. 4171
-
-
Chang, D.K.1
Lin, C.T.2
Wu, C.H.3
Wu, H.C.4
-
172
-
-
67649683033
-
Antiangiogenic Targeting Liposomes Increase Therapeutic Efficacy for Solid Tumors
-
Chang, D. K.; Chiu, C. Y.; Kuo, S. Y.; Lin, W. C.; Lo, A.; Wang, Y. P.; Li, P. C.; Wu, H. C. Antiangiogenic Targeting Liposomes Increase Therapeutic Efficacy for Solid Tumors J. Biol. Chem. 2009, 284, 12905-12916
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 12905-12916
-
-
Chang, D.K.1
Chiu, C.Y.2
Kuo, S.Y.3
Lin, W.C.4
Lo, A.5
Wang, Y.P.6
Li, P.C.7
Wu, H.C.8
-
173
-
-
77149155968
-
Trends in Risks Associated with New Drug Development: Success Rates for Investigational Drugs
-
DiMasi, J. A.; Feldman, L.; Seckler, A.; Wilson, A. Trends in Risks Associated with New Drug Development: Success Rates for Investigational Drugs Clin. Pharmacol. Ther. 2010, 87, 272-277
-
(2010)
Clin. Pharmacol. Ther.
, vol.87
, pp. 272-277
-
-
Dimasi, J.A.1
Feldman, L.2
Seckler, A.3
Wilson, A.4
-
174
-
-
12344273726
-
The blood-brain barrier: Bottleneck in brain drug development
-
DOI 10.1602/neurorx.2.1.3
-
Pardridge, W. M. The Blood-Brain Barrier: Bottleneck in Brain Drug Development NeuroRx 2005, 2, 3-14 (Pubitemid 40128022)
-
(2005)
NeuroRx
, vol.2
, Issue.1
, pp. 3-14
-
-
Pardridge, W.M.1
-
175
-
-
39749166269
-
Large neutral amino acid transporter enables brain drug delivery via prodrugs
-
DOI 10.1021/jm701175d
-
Gynther, M.; Laine, K.; Ropponen, J.; Leppanen, J.; Mannila, A.; Nevalainen, T.; Savolainen, J.; Jarvinen, T. T.; Rautio, J. Large Neutral Amino Acid Transporter Enables Brain Drug Delivery via Prodrugs J. Med. Chem. 2008, 51, 932-936 (Pubitemid 351304700)
-
(2008)
Journal of Medicinal Chemistry
, vol.51
, Issue.4
, pp. 932-936
-
-
Gynther, M.1
Laine, K.2
Ropponen, J.3
Leppanen, J.4
Mannila, A.5
Nevalainen, T.6
Savolainen, J.7
Jarvinen, T.8
Rautio, J.9
-
176
-
-
66249128230
-
Glucose Promoiety Enables Glucose Transporter Mediated Brain Uptake of Ketoprofen and Indomethacin Prodrugs in Rats
-
Gynther, M.; Ropponen, J.; Laine, K.; Leppanen, J.; Haapakoski, P.; Peura, L.; Jarvinen, T.; Rautio, J. Glucose Promoiety Enables Glucose Transporter Mediated Brain Uptake of Ketoprofen and Indomethacin Prodrugs in Rats J. Med. Chem. 2009, 52, 3348-3353
-
(2009)
J. Med. Chem.
, vol.52
, pp. 3348-3353
-
-
Gynther, M.1
Ropponen, J.2
Laine, K.3
Leppanen, J.4
Haapakoski, P.5
Peura, L.6
Jarvinen, T.7
Rautio, J.8
-
177
-
-
78149236457
-
Investigation of the Relationship between Topology and Selectivity for Druglike Molecules
-
Yang, Y. D.; Chen, H. M.; Nilsson, I.; Muresan, S.; Engkvist, O. Investigation of the Relationship between Topology and Selectivity for Druglike Molecules J. Med. Chem. 2010, 53, 7709-7714
-
(2010)
J. Med. Chem.
, vol.53
, pp. 7709-7714
-
-
Yang, Y.D.1
Chen, H.M.2
Nilsson, I.3
Muresan, S.4
Engkvist, O.5
-
178
-
-
49849094738
-
Physiochemical Drug Properties Associated with in Vivo Toxicological Outcomes
-
Hughes, J. D.; Blagg, J.; Price, D. A.; Bailey, S.; DeCrescenzo, G. A.; Devraj, R. V.; Ellsworth, E.; Fobian, Y. M.; Gibbs, M. E.; Gilles, R. W.; Greene, N.; Huang, E.; Krieger-Burke, T.; Loesel, J.; Wager, T.; Whiteley, L.; Zhang, Y. Physiochemical Drug Properties Associated with in Vivo Toxicological Outcomes Bioorg. Med. Chem. Lett. 2008, 18, 4872-4875
-
(2008)
Bioorg. Med. Chem. Lett.
, vol.18
, pp. 4872-4875
-
-
Hughes, J.D.1
Blagg, J.2
Price, D.A.3
Bailey, S.4
Decrescenzo, G.A.5
Devraj, R.V.6
Ellsworth, E.7
Fobian, Y.M.8
Gibbs, M.E.9
Gilles, R.W.10
Greene, N.11
Huang, E.12
Krieger-Burke, T.13
Loesel, J.14
Wager, T.15
Whiteley, L.16
Zhang, Y.17
-
179
-
-
0035324944
-
Molecular Complexity and Its Impact on the Probability of Finding Leads for Drug Discovery
-
Hann, M. M.; Leach, A. R.; Harper, G. Molecular Complexity and Its Impact on the Probability of Finding Leads for Drug Discovery J. Chem. Inf. Comput. Sci. 2001, 41, 856-864
-
(2001)
J. Chem. Inf. Comput. Sci.
, vol.41
, pp. 856-864
-
-
Hann, M.M.1
Leach, A.R.2
Harper, G.3
-
180
-
-
79955637690
-
Rational Methods for the Selection of Diverse Screening Compounds
-
Huggins, D. J.; Venkitaraman, A. R.; Spring, D. R. Rational Methods for the Selection of Diverse Screening Compounds ACS Chem. Biol. 2011, 6, 208-217
-
(2011)
ACS Chem. Biol.
, vol.6
, pp. 208-217
-
-
Huggins, D.J.1
Venkitaraman, A.R.2
Spring, D.R.3
-
181
-
-
77955683189
-
Comparison of Cyclooxygenase-1 Crystal Structures: Cross-Talk between Monomers Comprising Cyclooxygenase-1 Homodimers
-
Sidhu, R. S.; Lee, J. Y.; Yuan, C.; Smith, W. L. Comparison of Cyclooxygenase-1 Crystal Structures: Cross-Talk between Monomers Comprising Cyclooxygenase-1 Homodimers Biochemistry 2010, 49, 7069-7079
-
(2010)
Biochemistry
, vol.49
, pp. 7069-7079
-
-
Sidhu, R.S.1
Lee, J.Y.2
Yuan, C.3
Smith, W.L.4
-
182
-
-
35649004472
-
Structural and functional analysis of the PDZ domains of human HtrA1 and HtrA3
-
DOI 10.1110/ps.073049407
-
Runyon, S. T.; Zhang, Y.; Appleton, B. A.; Sazinsky, S. L.; Wu, P.; Pan, B.; Wiesmann, C.; Skelton, N. J.; Sidhu, S. S. Structural and Functional Analysis of the PDZ Domains of Human HtrA1 and HtrA3 Protein Sci. 2007, 16, 2454-2471 (Pubitemid 350036751)
-
(2007)
Protein Science
, vol.16
, Issue.11
, pp. 2454-2471
-
-
Runyon, S.T.1
Zhang, Y.2
Appleton, B.A.3
Sazinsky, S.L.4
Wu, P.5
Pan, B.6
Wiesmann, C.7
Skelton, N.J.8
Sidhu, S.S.9
-
183
-
-
34547559252
-
Structural and functional analysis of the ligand specificity of the HtrA2/Omi PDZ domain
-
DOI 10.1110/ps.072833207
-
Zhang, Y.; Appleton, B. A.; Wu, P.; Wiesmann, C.; Sidhu, S. S. Structural and Functional Analysis of the Ligand Specificity of the HtrA2/Omi PDZ Domain Protein Sci. 2007, 16, 1738-1750 (Pubitemid 47195700)
-
(2007)
Protein Science
, vol.16
, Issue.8
, pp. 1738-1750
-
-
Zhang, Y.1
Appleton, B.A.2
Wu, P.3
Wiesmann, C.4
Sidhu, S.S.5
-
184
-
-
33847361008
-
Atomic resolution crystal structures of HIV-1 protease and mutants V82A and I84V with saquinavir
-
DOI 10.1002/prot.21304
-
Tie, Y.; Kovalevsky, A. Y.; Boross, P.; Wang, Y. F.; Ghosh, A. K.; Tozser, J.; Harrison, R. W.; Weber, I. T. Atomic Resolution Crystal Structures of HIV-1 Protease and Mutants V82A and I84V with Saquinavir Proteins: Struct., Funct., Bioinf. 2007, 67, 232-242 (Pubitemid 46340142)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.67
, Issue.1
, pp. 232-242
-
-
Tie, Y.1
Kovalevsky, A.Y.2
Boross, P.3
Wang, Y.-F.4
Ghosh, A.K.5
Tozser, J.6
Harrison, R.W.7
Weber, I.T.8
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