-
1
-
-
0026337077
-
The coagulation cascade: Initiation, maintenance and regulation
-
Davie, E. W.; Fujikawa, K.; Kisiel, W. The coagulation cascade: initiation, maintenance and regulation. Biochemistry 1991, 30, 10363-10370.
-
(1991)
Biochemistry
, vol.30
, pp. 10363-10370
-
-
Davie, E.W.1
Fujikawa, K.2
Kisiel, W.3
-
2
-
-
0030811924
-
Comparative analysis of haemostatic proteinases: Structural aspects of thrombin, factor Xa, factor IXa and protein C
-
Bode, W.; Brandstetter, H.; Mather, T.; Stubbs, M. T. Comparative analysis of haemostatic proteinases: structural aspects of thrombin, factor Xa, factor IXa and protein C. Thromb. Haemostasis 1997, 78, 501-511.
-
(1997)
Thromb. Haemostasis
, vol.78
, pp. 501-511
-
-
Bode, W.1
Brandstetter, H.2
Mather, T.3
Stubbs, M.T.4
-
3
-
-
0542451678
-
Comparative molecular similarity indices analysis: CoMSIA
-
Klebe, G. Comparative molecular similarity indices analysis: CoMSIA. Perspect Drug Discovery Des. 1998, 12, 87-104.
-
(1998)
Perspect Drug Discovery Des.
, vol.12
, pp. 87-104
-
-
Klebe, G.1
-
4
-
-
0023751431
-
Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
-
Cramer, R. D., III; Patterson, D. E.; Bunce, J. D. Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins. J. Am. Chem. Soc. 1988, 110, 5959-5967.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 5959-5967
-
-
Cramer R.D. III1
Patterson, D.E.2
Bunce, J.D.3
-
5
-
-
0027944195
-
Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity
-
Klebe, G.; Abraham, U.; Mietzner, T. Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity. J. Med. Chem. 1994, 37, 4130-4146.
-
(1994)
J. Med. Chem.
, vol.37
, pp. 4130-4146
-
-
Klebe, G.1
Abraham, U.2
Mietzner, T.3
-
8
-
-
0028933176
-
Structure-activity relationships of inhibitors derived from 3-amidinophenylalanine
-
Stürzebecher, J.; Prasa, D.; Wikström, P.; Vieweg, H. Structure-activity relationships of inhibitors derived from 3-amidinophenylalanine. J. Enzyme Inhib. 1995, 9, 87-99.
-
(1995)
J. Enzyme Inhib.
, vol.9
, pp. 87-99
-
-
Stürzebecher, J.1
Prasa, D.2
Wikström, P.3
Vieweg, H.4
-
9
-
-
0030768740
-
Synthesis and structure - activity relationships of potent thrombin inhibitors: Piperazides of 3-amidinophenylalanine
-
Stürzebecher, J.; Prasa, D.; Hauptmann, J.; Vieweg, H.; Wikström, P. Synthesis and structure - activity relationships of potent thrombin inhibitors: piperazides of 3-amidinophenylalanine. J. Med. Chem. 1997, 40, 3091-3099.
-
(1997)
J. Med. Chem.
, vol.40
, pp. 3091-3099
-
-
Stürzebecher, J.1
Prasa, D.2
Hauptmann, J.3
Vieweg, H.4
Wikström, P.5
-
10
-
-
85135600163
-
Comparative molecular similarity indices analysis (CoMSIA) to study hydrogen bonding properties and to score combinatorial libraries
-
in press
-
Klebe, G.; Abraham, U. Comparative molecular similarity indices analysis (CoMSIA) to study hydrogen bonding properties and to score combinatorial libraries. J. Comput.-Aided Mol. Des. 1998, in press.
-
(1998)
J. Comput.-Aided Mol. Des.
-
-
Klebe, G.1
Abraham, U.2
-
11
-
-
0002165646
-
CoMFA: Scope and limitations
-
Kubinyi, H., Ed.; ESCOM: Leiden
-
Folkers, G.; Merz, A.; Rognan, D. CoMFA: scope and limitations. In 3D QSAR in Drug Design, Theory Methods and Applications; Kubinyi, H., Ed.; ESCOM: Leiden, 1993; pp 583-618.
-
(1993)
3D QSAR in Drug Design, Theory Methods and Applications
, pp. 583-618
-
-
Folkers, G.1
Merz, A.2
Rognan, D.3
-
12
-
-
0001681052
-
The collinearity problem in linear regression. The partial least squares approach to generalized inverses
-
Wold, S.; Ruhe, A.; Wold, H.; Dunn, W. J., III. The collinearity problem in linear regression. The partial least squares approach to generalized inverses. SIAM J. Sci. Stat. Comput. 1984, 5, 735-743.
-
(1984)
SIAM J. Sci. Stat. Comput.
, vol.5
, pp. 735-743
-
-
Wold, S.1
Ruhe, A.2
Wold, H.3
Dunn W.J. III4
-
13
-
-
0024154259
-
Multivariate data analysis and experimental design in biomedical research
-
Stahle, L.; Wold, S. Multivariate data analysis and experimental design in biomedical research. Prog. Med. Chem. 1988, 25, 291-338.
-
(1988)
Prog. Med. Chem.
, vol.25
, pp. 291-338
-
-
Stahle, L.1
Wold, S.2
-
14
-
-
0004301669
-
-
Tripos Inc., 1699 South Hanley Rd, Suite 303, St. Louis, MO 63144
-
SYBYL molecular modeling software; Tripos Inc., 1699 South Hanley Rd, Suite 303, St. Louis, MO 63144.
-
SYBYL Molecular Modeling Software
-
-
-
15
-
-
0017411710
-
The protein data bank: A computer-based archival file for macromolecular structures
-
Bernstein, F. C.; Koetzle, T. F.; Williams, G. J.; Meyer, E. E., Jr.; Brice, M. D.; Rodgers, J. R.; Kennard, O.; Shimanouchi, T.; Tasumi, M. The protein data bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 1977, 112, 535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
Meyer E.E., Jr.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
16
-
-
0026465007
-
Refined 2.3 Å X-ray crystal structure of bovine thrombin complexes formed with the benzamidine and arginine-based thrombin inhibitors NAPAP, 4-TAPAP and MQPA. A starting point for improving antithrombotics
-
Brandstetter, H.; Turk, D.; Höffken, H. W.; Grosse, D.; Stürzebecher, J.; Martin, P. D.; Edwards, B. F.; Bode, W. Refined 2.3 Å X-ray crystal structure of bovine thrombin complexes formed with the benzamidine and arginine-based thrombin inhibitors NAPAP, 4-TAPAP and MQPA. A starting point for improving antithrombotics. J. Mol. Biol. 1992, 226, 1085-1099.
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 1085-1099
-
-
Brandstetter, H.1
Turk, D.2
Höffken, H.W.3
Grosse, D.4
Stürzebecher, J.5
Martin, P.D.6
Edwards, B.F.7
Bode, W.8
-
17
-
-
0025851272
-
α-tosylated piperidides of m-amidino-, p-amidino-and p-guanidino phenylalanine to thrombin and trypsin. X-ray crystal structures of their trypsin complexes and modeling of their thrombin complexes
-
α-tosylated piperidides of m-amidino-, p-amidino-and p-guanidino phenylalanine to thrombin and trypsin. X-ray crystal structures of their trypsin complexes and modeling of their thrombin complexes. FEBS Lett. 1991, 287, 133-138.
-
(1991)
FEBS Lett.
, vol.287
, pp. 133-138
-
-
Turk, D.1
Stürzebecher, J.2
Bode, W.3
-
18
-
-
0027304964
-
Structure of human des(1-45) factor Xa at 2.2 Å resolution
-
Padmanabhan, K.; Padmanabhan, K. P.; Tulinsky, A.; Park, C. H.; Bode, W.; Huber, R.; Blankenship, D. T.; Cardin, A. D.; Kisiel, W. Structure of human des(1-45) factor Xa at 2.2 Å resolution. J. Mol. Biol. 1993, 232, 947-966.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 947-966
-
-
Padmanabhan, K.1
Padmanabhan, K.P.2
Tulinsky, A.3
Park, C.H.4
Bode, W.5
Huber, R.6
Blankenship, D.T.7
Cardin, A.D.8
Kisiel, W.9
-
19
-
-
0023325062
-
Strategic approaches to drug design. I. An integrated software framework for molecular modelling
-
Vinter, J. G.; Davis, A.; Saunder, M. R. Strategic approaches to drug design. I. An integrated software framework for molecular modelling. J. Comput.-Aided Mol. Des. 1987, 1, 31-35.
-
(1987)
J. Comput.-Aided Mol. Des.
, vol.1
, pp. 31-35
-
-
Vinter, J.G.1
Davis, A.2
Saunder, M.R.3
-
20
-
-
84988115618
-
Validation of the general purpose Tripos 5.2 force field
-
Clark, M.; Cramer, R. D., III; Van Opdenbosh, N. Validation of the general purpose Tripos 5.2 force field. J. Comput. Chem. 1989, 10, 982-1012.
-
(1989)
J. Comput. Chem.
, vol.10
, pp. 982-1012
-
-
Clark, M.1
Cramer R.D. III2
Van Opdenbosh, N.3
-
21
-
-
0023326161
-
A unique geometry of the active site of angiotensin-converting enzyme consistent with structure - activity studies
-
Mayer, D.; Naylor, C. B.; Motoc, I.; Marshall, G. R. A unique geometry of the active site of angiotensin-converting enzyme consistent with structure - activity studies. J. Comput.-Aided Mol. Des. 1987, 1, 3-16.
-
(1987)
J. Comput.-Aided Mol. Des.
, vol.1
, pp. 3-16
-
-
Mayer, D.1
Naylor, C.B.2
Motoc, I.3
Marshall, G.R.4
-
22
-
-
0842341771
-
AM1: A new general purpose quantum mechanical molecular model
-
Dewar, M. J. S.; Zoebisch, E. G.; Healy, E. F.; Stewart, J. J. P. AM1: a new general purpose quantum mechanical molecular model. J. Am. Chem. Soc. 1985, 107, 3902-3909.
-
(1985)
J. Am. Chem. Soc.
, vol.107
, pp. 3902-3909
-
-
Dewar, M.J.S.1
Zoebisch, E.G.2
Healy, E.F.3
Stewart, J.J.P.4
-
23
-
-
0003603789
-
-
QCPE #445; J. Frank Seiler Research Laboratory, United States Air Force Academy, CO 80840
-
Stewart, J. J. P. MOPAC: a general molecular orbital package; QCPE #445; J. Frank Seiler Research Laboratory, United States Air Force Academy, CO 80840.
-
MOPAC: A General Molecular Orbital Package
-
-
Stewart, J.J.P.1
-
24
-
-
0025390935
-
MOPAC: A semiempirical molecular orbital program
-
Stewart, J. J. MOPAC: a semiempirical molecular orbital program. J. Comput.-Aided Mol. Des. 1990, 4, 1-105.
-
(1990)
J. Comput.-Aided Mol. Des.
, vol.4
, pp. 1-105
-
-
Stewart, J.J.1
-
25
-
-
44949267284
-
An alternative method for the alignment of molecular structures: Maximizing electrostatic and steric overlap
-
Kearsley, S. K.; Smith, G. M. An alternative method for the alignment of molecular structures: maximizing electrostatic and steric overlap. Tetrahedron Comput. Methodol. 1990, 3, 615-633.
-
(1990)
Tetrahedron Comput. Methodol.
, vol.3
, pp. 615-633
-
-
Kearsley, S.K.1
Smith, G.M.2
-
26
-
-
0344306431
-
-
The CoMSIA method described will be made generally available with the SYBYL 6.5.1 release
-
The CoMSIA method described will be made generally available with the SYBYL 6.5.1 release.
-
-
-
-
27
-
-
0024716284
-
Atomic physicochemical parameters for three-dimensional structure directed quantitative structure - activity relationships. 4. Additional parameters for hydrophobic and dispersive interactions and their application for an automated superposition of certain naturally occurring nucleoside antibiotics
-
Viswanadhan, V. N.; Ghose, A. K.; Revankar, G. R.; Robins, R. K. Atomic physicochemical parameters for three-dimensional structure directed quantitative structure - activity relationships. 4. Additional parameters for hydrophobic and dispersive interactions and their application for an automated superposition of certain naturally occurring nucleoside antibiotics. J. Chem. Inf. Comput. Sci. 1989, 29, 163-172.
-
(1989)
J. Chem. Inf. Comput. Sci.
, vol.29
, pp. 163-172
-
-
Viswanadhan, V.N.1
Ghose, A.K.2
Revankar, G.R.3
Robins, R.K.4
-
28
-
-
0028287528
-
The use of composite crystal-field environments in molecular recognition and the de novo design of protein ligands
-
Klebe, G. The use of composite crystal-field environments in molecular recognition and the de novo design of protein ligands. J. Mol. Biol. 1994, 237, 212-235.
-
(1994)
J. Mol. Biol.
, vol.237
, pp. 212-235
-
-
Klebe, G.1
-
29
-
-
0033020898
-
Methodological developments and strategies for a fast flexible superposition of drug-size molecules
-
in press
-
Webe, G.; Mietzner, T.; Weber, F. Methodological developments and strategies for a fast flexible superposition of drug-size molecules. J. Comput.-Aided Mol. Des. 1999, in press.
-
(1999)
J. Comput.-Aided Mol. Des.
-
-
Webe, G.1
Mietzner, T.2
Weber, F.3
-
30
-
-
0027672324
-
Sample-distance partial least squares: PLS optimized for many variables, with application to CoMFA
-
Bush, B. L.; Nachbar, R. B., Jr. Sample-distance partial least squares: PLS optimized for many variables, with application to CoMFA. J. Comput.-Aided Mol. Des. 1993, 7, 587-619.
-
(1993)
J. Comput.-Aided Mol. Des.
, vol.7
, pp. 587-619
-
-
Bush, B.L.1
Nachbar R.B., Jr.2
-
31
-
-
0029655006
-
Cross-validated R2-guided region selection for comparative molecular field analysis: A simple method to achieve consistent results
-
Cho, S. J.; Tropsha, A. Cross-validated R2-guided region selection for comparative molecular field analysis: a simple method to achieve consistent results. J. Med. Chem. 1995, 38, 1060-1066.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 1060-1066
-
-
Cho, S.J.1
Tropsha, A.2
-
32
-
-
0006095789
-
UniSurCoMFA: For stable and consistent 3D QSAR
-
Liljefors, T., Jørgensen, F. S., Krogsgaard-Larsen. P., Eds.; Munksgaard: Copenhagen
-
Kim, K. H.; Brusniak, M. K.; Pearlman, R. S. UniSurCoMFA: for stable and consistent 3D QSAR. In Rational Molecular Design in Drug Research; Liljefors, T., Jørgensen, F. S., Krogsgaard-Larsen. P., Eds.; Munksgaard: Copenhagen, 1998; pp 67-83.
-
(1998)
Rational Molecular Design in Drug Research
, pp. 67-83
-
-
Kim, K.H.1
Brusniak, M.K.2
Pearlman, R.S.3
-
33
-
-
0344738714
-
-
The contour levels of CoMFA contour maps are given normally in kcal/mol. As the CoMSIA similarity indices fields are defined in arbitrary units, they do not correspond to any potential describing different partitions of molecular interactions such as CoMFA. Consequently, the CoMSIA contour levels are given without any units
-
The contour levels of CoMFA contour maps are given normally in kcal/mol. As the CoMSIA similarity indices fields are defined in arbitrary units, they do not correspond to any potential describing different partitions of molecular interactions such as CoMFA. Consequently, the CoMSIA contour levels are given without any units.
-
-
-
-
34
-
-
0021871375
-
A computational procedure for determining energetically favorable binding sites on biologically important macromolecules
-
Goodford, P. J. A computational procedure for determining energetically favorable binding sites on biologically important macromolecules. J. Med. Chem. 1985, 28, 849-857.
-
(1985)
J. Med. Chem.
, vol.28
, pp. 849-857
-
-
Goodford, P.J.1
-
35
-
-
0026292147
-
HINT: A new method of empirical hydrophobic field calculation for CoMFA
-
Kellogg, G. E.; Semus, S. F.; Abraham, D. J. HINT: a new method of empirical hydrophobic field calculation for CoMFA. J. Comput.-Aided Mol. Des. 1991, 5, 545-552.
-
(1991)
J. Comput.-Aided Mol. Des.
, vol.5
, pp. 545-552
-
-
Kellogg, G.E.1
Semus, S.F.2
Abraham, D.J.3
-
36
-
-
0028411658
-
Molecular lipophilicity potential, a tool in 3D QSAR: Method and applications
-
Gaillard, P.; Carrupt, P. A.; Testa, B.; Boudon, A. Molecular lipophilicity potential, a tool in 3D QSAR: method and applications. J. Comput.-Aided Mol. Des. 1994, 8, 83-96.
-
(1994)
J. Comput.-Aided Mol. Des.
, vol.8
, pp. 83-96
-
-
Gaillard, P.1
Carrupt, P.A.2
Testa, B.3
Boudon, A.4
-
37
-
-
0004480112
-
A critical review of recent CoMFA applications
-
Kim, K. H.; Greco, G.; Novellino, E. A critical review of recent CoMFA applications. Perspect Drug Discovery Des. 1998, 12, 257-315.
-
(1998)
Perspect Drug Discovery Des.
, vol.12
, pp. 257-315
-
-
Kim, K.H.1
Greco, G.2
Novellino, E.3
-
38
-
-
0001067684
-
Structural aspects of factor Xa inhibition
-
Stubbs, M. T. Structural aspects of factor Xa inhibition. Curr. Pharm. Des. 1996, 2, 543-552.
-
(1996)
Curr. Pharm. Des.
, vol.2
, pp. 543-552
-
-
Stubbs, M.T.1
|