-
1
-
-
0001359519
-
-
Soll, D.; Rajbhandary, U. L.; Eds.; ASM Press: Washington, DC
-
Meinnel, T.; Mechulam, Y.; Blanquet, S. In tRNA: Structure, Biosynthesis and Function; Soll, D.; Rajbhandary, U. L.; Eds.; ASM Press: Washington, DC, 1995; pp. 251-291.
-
(1995)
TRNA: Structure, Biosynthesis and Function
, pp. 251-291
-
-
Meinnel, T.1
Mechulam, Y.2
Blanquet, S.3
-
3
-
-
4544231739
-
-
Strømgaard, A.; Jensen, A. A.; Strømgaard, K. ChemBioChem 2004, 5, 909.
-
(2004)
, vol.5
, pp. 909
-
-
Strømgaard, A.1
Jensen, A.A.2
Chembiochem, S.K.3
-
5
-
-
3943088436
-
-
Hendrickson, T. L.; de Crécy-Lagard, V.; Schimmel, P. Annu Rev Biochem 2004, 73, 147.
-
(2004)
Annu Rev Biochem
, vol.73
, pp. 147
-
-
Hendrickson, T.L.1
De Crécy-Lagard, V.2
Schimmel, P.3
-
6
-
-
0032488817
-
-
Archontis, G.; Simonson, T.; Moras, D.; Rarplus, M. J Mol Biol 1998, 275, 823.
-
(1998)
J Mol Biol
, vol.275
, pp. 823
-
-
Archontis, G.1
Simonson, T.2
Moras, D.3
Rarplus, M.4
-
7
-
-
0035895423
-
-
Archontis, G.; Simonson, T.; Rarplus, M. J Mol Biol 2001, 306, 307.
-
(2001)
J Mol Biol
, vol.306
, pp. 307
-
-
Archontis, G.1
Simonson, T.2
Rarplus, M.3
-
8
-
-
32344451863
-
-
Thompson, D.; Plateau, P.; Simonson, T. ChemBioChem. 2006, 7, 337.
-
(2006)
ChemBioChem.
, vol.7
, pp. 337
-
-
Thompson, D.1
Plateau, P.2
Simonson, T.3
-
10
-
-
35648937527
-
-
Thompson, D.; Lazennec, C.; Plateau, P.; Simonson, T. J Biol Chem. 2007, 42, 30856.
-
(2007)
J Biol Chem.
, vol.42
, pp. 30856
-
-
Thompson, D.1
Lazennec, C.2
Plateau, P.3
Simonson, T.4
-
11
-
-
42449089814
-
-
Thompson, D.; Lazennec, C.; Plateau, P.; Simonson, T. Proteins 2008, 71, 1450.
-
(2008)
Proteins
, vol.71
, pp. 1450
-
-
Thompson, D.1
Lazennec, C.2
Plateau, P.3
Simonson, T.4
-
12
-
-
0345306764
-
-
Kuhlman, B.; Dantas, G.; Ireton, G.; Varani, G.; Stoddard, B.; Baker, D. Science 2003, 302, 1364.
-
(2003)
Science
, vol.302
, pp. 1364
-
-
Kuhlman, B.1
Dantas, G.2
Ireton, G.3
Varani, G.4
Stoddard, B.5
Baker, D.6
-
14
-
-
42149153858
-
-
Guérois, R.; Lopez de la Paz, M., Eds. Humana Press: Totowa, NJ
-
Guérois, R.; Lopez de la Paz, M., Eds. Protein Design: Methods and Applications; Humana Press: Totowa, NJ, 2007.
-
(2007)
Protein Design: Methods and Applications
-
-
-
16
-
-
13444302392
-
-
Cochran, F. V.; Wu, S. P.; Wang, W; Nanda, V.; Saven, J. G.; Therien, M. J.; Degrado, W. F. J Am Chem Soc 2005, 127, 1346.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 1346
-
-
Cochran, F.V.1
Wu, S.P.2
Wang, W.3
Nanda, V.4
Saven, J.G.5
Therien, M.J.6
Degrado, W.F.7
-
17
-
-
22544451519
-
-
Chakrabarti, R.; Klibanov, A. M.; Friesner, R. A. Proc Natl Acad Sci USA 2005, 102, 10153.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 10153
-
-
Chakrabarti, R.1
Klibanov, A.M.2
Friesner, R.A.3
-
18
-
-
33750963095
-
-
Lassila, J. K.; Privett, H. K.; Allen, B. D.; Mayo, S. L. Proc Natl Acad Sci USA 2006, 103, 16710.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 16710
-
-
Lassila, J.K.1
Privett, H.K.2
Allen, B.D.3
Mayo, S.L.4
-
19
-
-
38549143261
-
-
Altaian, M. D.; Nalivaika, E. A.; Pradu-Jeyabalan, M.; Schiffer, C.; Tidor, B. Proteins 2008, 70, 678.
-
(2008)
Proteins
, vol.70
, pp. 678
-
-
Altaian, M.D.1
Nalivaika, E.A.2
Pradu-Jeyabalan, M.3
Schiffer, C.4
Tidor, B.5
-
21
-
-
35148855712
-
-
Lippow, S. M.; Wittrup, K. D.; Tidor, B. Nat Biotechnol 2007, 25, 1171.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1171
-
-
Lippow, S.M.1
Wittrup, K.D.2
Tidor, B.3
-
22
-
-
48249098990
-
-
Jackel, C.; Kast, P.; Hilvert, D. Annu Rev Biochem 2008, 37, 153.
-
(2008)
Annu Rev Biochem
, vol.37
, pp. 153
-
-
Jackel, C.1
Kast, P.2
Hilvert, D.3
-
23
-
-
84986512474
-
-
Brooks, B.; Bruccoleri, R.; Olafson, B.; States, D.; Swaminathan, S.; Karplus, M. J Compur Chem 1983, 4, 187.
-
(1983)
J Compur Chem
, vol.4
, pp. 187
-
-
Brooks, B.1
Bruccoleri, R.2
Olafson, B.3
States, D.4
Swaminathan, S.5
Karplus, M.6
-
24
-
-
34248586877
-
-
Lopes, A.; Aleksandrov, A.; Bathelt, C.; Archontis, G.; Simonson, T. Proteins 2007, 67, 853.
-
(2007)
Proteins
, vol.67
, pp. 853
-
-
Lopes, A.1
Aleksandrov, A.2
Bathelt, C.3
Archontis, G.4
Simonson, T.5
-
25
-
-
42149177372
-
-
Schmidt am Busch, M.; Lopes, A.; Mignon, D.; Simonson, T. J Comput Chem 2008, 29, 1092.
-
(2008)
J Comput Chem
, vol.29
, pp. 1092
-
-
Schmidt Am Busch, M.1
Lopes, A.2
Mignon, D.3
Simonson, T.4
-
26
-
-
42149195952
-
-
Schmidt am Busch, M.; Lopes, A.; Amara, N.; Bathelt, C.; Simonson, T. BMC Bioinformatics 2008, 9, 148.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 148
-
-
Schmidt Am Busch, M.1
Lopes, A.2
Amara, N.3
Bathelt, C.4
Simonson, T.5
-
27
-
-
0034682869
-
-
Wernisch, L.; Héry, S.; Wodak, S. J Mol Biol 2000, 301, 713.
-
(2000)
J Mol Biol
, vol.301
, pp. 713
-
-
Wernisch, L.1
Héry, S.2
Wodak, S.3
-
28
-
-
57049119250
-
-
Jaramillo, A.; Wodak, S.; Wernisch, L.; Héry, S. Comb Chem. High Throughput Screen 200.1, 4, 639.
-
(2001)
Comb Chem. High Throughput Screen
, vol.4
, pp. 639
-
-
Jaramillo, A.1
Wodak, S.2
Wernisch, L.3
Héry, S.4
-
29
-
-
70349328238
-
-
Schmidt am. Busch, M.; Mignon, D.; Simonson, T. Proteins 2009, 77, 139.
-
(2009)
Proteins
, vol.77
, pp. 139
-
-
Schmidt Am Busch, M.1
Mignon, D.2
Simonson, T.3
-
30
-
-
0026179489
-
-
Tuffery, P.; Etchebest, C.; Hazout, S.; Lavery, R. J Biomol Struct Dyn 1991, 8, 1267.
-
(1991)
J Biomol Struct Dyn
, vol.8
, pp. 1267
-
-
Tuffery, P.1
Etchebest, C.2
Hazout, S.3
Lavery, R.4
-
34
-
-
0003769049
-
-
A. System for X-Ray Crystallography and NMR; Yale University Press: New Haven
-
Brünger, A. T. X-plor Version. 3.1, A. System for X-Ray Crystallography and NMR; Yale University Press: New Haven, 1992.
-
(1992)
X-plor Version. 3.1
-
-
Brünger, A.T.1
-
36
-
-
0033571581
-
-
Eiler, S.; Dock-Bregeon, A.; Moulinier, L.; Thierry, J.; Moras, D. EMBO J 1999, 18, 6532.
-
(1999)
EMBO J
, vol.18
, pp. 6532
-
-
Eiler, S.1
Dock-Bregeon, A.2
Moulinier, L.3
Thierry, J.4
Moras, D.5
-
37
-
-
0032525301
-
-
Berthet-Colominas, C.; Seignovert, L.; Hartlein, M.; Grotli, M.; Cusack, S. EMBO J 1998, 17, 2947.
-
(1998)
EMBO J
, vol.17
, pp. 2947
-
-
Berthet-Colominas, C.1
Seignovert, L.2
Hartlein, M.3
Grotli, M.4
Cusack, S.5
-
38
-
-
0028104763
-
-
Poterszman, A.; .Delarue, M.; Thierry, J.; Moras, D. J Mol Biol 1994, 244, 158.
-
(1994)
Moras, D. J Mol Biol
, vol.244
, pp. 158
-
-
Poterszman, A.1
Delarue, M.2
Thierry, J.3
-
39
-
-
0028263809
-
-
Delarue, M.; Poterszman, A.; Nikonov, S.; Garber, M.; Moras, D.; Thierry, J. EMBO J 1994, 13, 3219.
-
(1994)
EMBO J
, vol.13
, pp. 3219
-
-
Delarue, M.1
Poterszman, A.2
Nikonov, S.3
Garber, M.4
Moras, D.5
Thierry, J.6
-
40
-
-
0028084909
-
-
Cavarelli, J.; Eriani, G.; Rees, B.; Ruff, M.; Boeglin, M.; Mitschler, A.; Martin, F.; Gangloff, J.; Thierry, J.; Moras, D. EMBO J 1994, 13, 327.
-
(1994)
EMBO J
, vol.13
, pp. 327
-
-
Cavarelli, J.1
Eriani, G.2
Rees, B.3
Ruff, M.4
Boeglin, M.5
Mitschler, A.6
Martin, F.7
Gangloff, J.8
Thierry, J.9
Moras, D.10
-
42
-
-
0000012952
-
-
Stote, R.; States, D.; Karplus, M. J Chim Phys 1991, 88, 2419.
-
(1991)
J Chim Phys
, vol.88
, pp. 2419
-
-
Stote, R.1
States, D.2
Karplus, M.3
-
43
-
-
0041784950
-
-
Mackerell, A.; Bashford, D.; Bellott, M.; Dunbrack, R.; Evanseck, J.; Field, M.; Fischer, S.; Gao, J.; Guo, H.; Ha, S.; Joseph, D.; Kuchnir, L.; Ruczera, R.; Lau, F.; Mattos, C.; Michnick, S.; Ngo, T.; Nguyen, D.; Prodhom, B.; Reiher, W.; Roux, B.; Smith, J.; Stote, R.; Straub, J.; Watanabe, M.; Wiorkiewicz-Ruczera, J.; Yin, D.; Rarplus, M. J Phys Chem. B 1998, 102, 3586.
-
(1998)
J Phys Chem. B
, vol.102
, pp. 3586
-
-
Mackerell, A.1
Bashford, D.2
Bellott, M.3
Dunbrack, R.4
Evanseck, J.5
Field, M.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph, D.11
Kuchnir, L.12
Ruczera, R.13
Lau, F.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.18
Prodhom, B.19
Reiher, W.20
Roux, B.21
Smith, J.22
Stote, R.23
Straub, J.24
Watanabe, M.25
Wiorkiewicz-Ruczera, J.26
Yin, D.27
Rarplus, M.28
more..
-
44
-
-
0004016501
-
-
Jorgensen, W.; Chandrasekar, J.; Madura, J.; Impey, R.; Klein, M. J Chem. Phys 1983, 79, 926.
-
(1983)
J Chem. Phys
, vol.79
, pp. 926
-
-
Jorgensen, W.1
Chandrasekar, J.2
Madura, J.3
Impey, R.4
Klein, M.5
-
45
-
-
0032528684
-
-
Arnez, J.; Flanagan, K.; Moras, D.; Simonson, T. Proteins 1998, 32, 362.
-
(1998)
Proteins
, vol.32
, pp. 362
-
-
Arnez, J.1
Flanagan, K.2
Moras, D.3
Simonson, T.4
-
46
-
-
84986512474
-
-
Brooks, B.; Bruccoleri, R.; Olafson, B.; States, D.; Swaminathan, S.; Karplus, M. J Comput Chem. 1983, 4, 187.
-
(1983)
J Comput Chem.
, vol.4
, pp. 187
-
-
Brooks, B.1
Bruccoleri, R.2
Olafson, B.3
States, D.4
Swaminathan, S.5
Karplus, M.6
-
47
-
-
0032096837
-
-
Im, W; Beglov, D.; Roux, B. Comput Phys Commun 1998, 111, 59.
-
(1998)
Comput Phys Commun
, vol.111
, pp. 59
-
-
Im, W.1
Beglov, D.2
Roux, B.3
-
50
-
-
62849122214
-
-
Chipot, C.; Pohorille, A., Eds.; Springer Verlag: New York, Chapter 12
-
Simonson, T. In Free Energy Calculations: Theory and Applications in Chemistry and Biology; Chipot, C.; Pohorille, A., Eds.; Springer Verlag: New York, 2007; Chapter 12, pp. 423-461.
-
(2007)
Free Energy Calculations: Theory and Applications in Chemistry and Biology
, pp. 423-461
-
-
Simonson, T.1
-
54
-
-
84962344593
-
-
Tunon, I.; Silla, E.; Pascual-Ahuir, J. L. Chem Phys Lett 1993, 203, 289.
-
(1993)
Chem Phys Lett
, vol.203
, pp. 289
-
-
Tunon, I.1
Silla, E.2
Pascual-Ahuir, J.L.3
-
56
-
-
0038833031
-
-
Hunenberger, P.; Helms, V.; Narayana, N.; Taylor, S.; McCammon, J. Biochemistry 1999, 38, 2358.
-
(1999)
Biochemistry
, vol.38
, pp. 2358
-
-
Hunenberger, P.1
Helms, V.2
Narayana, N.3
Taylor, S.4
McCammon, J.5
-
57
-
-
0035837066
-
-
Wong, C.; Hunenberger, P.; Akamine, P.; Narayana, N.; Diller, T.; McCammon, J.; Taylor, S.; Xuong, N. J Med Chem 2001, 44, 1530.
-
(2001)
J Med Chem
, vol.44
, pp. 1530
-
-
Wong, C.1
Hunenberger, P.2
Akamine, P.3
Narayana, N.4
Diller, T.5
McCammon, J.6
Taylor, S.7
Xuong, N.8
-
58
-
-
0034789590
-
-
Wang, W.; Lim, W. A.; Jakalian, A.; Wang, J.; Luo, R.; Bayly, C. I.; Kollman, P. A. J Am. Chem. Soc 2001, 123, 3986.
-
(2001)
J Am. Chem. Soc
, vol.123
, pp. 3986
-
-
Wang, W.1
Lim, W.A.2
Jakalian, A.3
Wang, J.4
Luo, R.5
Bayly, C.I.6
Kollman, P.A.7
-
60
-
-
0031008575
-
-
Froloff, N.; Windemuth, A.; Honig, B. Protein Sci 1997, 6, 1293.
-
(1997)
Protein Sci
, vol.6
, pp. 1293
-
-
Froloff, N.1
Windemuth, A.2
Honig, B.3
-
61
-
-
33748568807
-
-
Yang, G.; Trylska, J.; TOT, Y; McCammon, J. A. J Med Chem 2006, 49, 5478.
-
(2006)
J Med Chem
, vol.49
, pp. 5478
-
-
Yang, G.1
Trylska, J.2
Tot, Y.3
McCammon, J.A.4
-
62
-
-
0042208326
-
-
Levy, R. M.; Zhang, L. Y; Gallicchio, E.; Felts, A. K. J Am Chem Soc 2003, 125, 9523.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 9523
-
-
Levy, R.M.1
Zhang, L.Y.2
Gallicchio, E.3
Felts, A.K.4
-
63
-
-
0034521981
-
-
Kollman, P.; Massova, L; Reyes, C.; Kuhn, B.; Huo, S.; Chong, L.; Lee, M.; Lee, T.; Duan, Y.; Wang, W; Donini, O.; Cieplak, P.; Srinivasan, J.; Case, D. A.; Cheatham, T. Acc Chem Res 2000, 33, 889.
-
(2000)
Acc Chem Res
, vol.33
, pp. 889
-
-
Kollman, P.1
Massova, L.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
Donini, O.11
Cieplak, P.12
Srinivasan, J.13
Case, D.A.14
Cheatham, T.15
-
65
-
-
0035950792
-
-
Zhou, R.; Friesner, R. A.; Ghosh, A.; Rizzo, R. C.; Jorgensen, W. L.; Levy, R. M. J Phys Chem B 2001, 105, 10388.
-
(2001)
J Phys Chem B
, vol.105
, pp. 10388
-
-
Zhou, R.1
Friesner, R.A.2
Ghosh, A.3
Rizzo, R.C.4
Jorgensen, W.L.5
Levy, R.M.6
-
66
-
-
33745799052
-
-
Carlsson, J.; Ander, M.; Nervall, M.; Aqvist, J. J Phys Chem B 2006, 110, 12034.
-
(2006)
J Phys Chem B
, vol.110
, pp. 12034
-
-
Carlsson, J.1
Ander, M.2
Nervall, M.3
Aqvist, J.4
-
67
-
-
0028896311
-
-
Shoichet, B. K.; Baase, W. A.; Ruroki, R.; Matthews, B. W Proc Natl Acad Sci USA 1995, 92, 452.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 452
-
-
Shoichet, B.K.1
Baase, W.A.2
Ruroki, R.3
Matthews, B.W.4
-
68
-
-
0035903548
-
-
Moulinier, L.; Eiler, S.; Eriani, G.; Gangloff, J.; Thierry, J.; Gabriel, K.; McClain, W.; Moras, D. EMBO J 2001, 20, 5290.
-
(2001)
EMBO J
, vol.20
, pp. 5290
-
-
Moulinier, L.1
Eiler, S.2
Eriani, G.3
Gangloff, J.4
Thierry, J.5
Gabriel, K.6
McClain, W.7
Moras, D.8
-
69
-
-
0028213965
-
-
Frugier, M.; Florentz, C.; Giégé, R. EMBO J 1992, 13, 2218.
-
(1992)
EMBO J
, vol.13
, pp. 2218
-
-
Frugier, M.1
Florentz, C.2
Giégé, R.3
-
70
-
-
0003729361
-
-
ASM Press: Washington, DC
-
Martinis, S.; Schimmel, P. In tRNA: Structure, Biosynthesis and Function; ASM Press: Washington, DC, 1995; pp. 349-370.
-
(1995)
TRNA: Structure, Biosynthesis and Function
, pp. 349-370
-
-
Martinis, S.1
Schimmel, P.2
-
71
-
-
0042733155
-
-
Brevet, A.; Chen, J.; Commans, S.; Lazennec, C.; Blanquet, S.; Plateau, P. J Biol Chem. 2003, 278, 30927.
-
(2003)
J Biol Chem.
, vol.278
, pp. 30927
-
-
Brevet, A.1
Chen, J.2
Commans, S.3
Lazennec, C.4
Blanquet, S.5
Plateau, P.6
-
72
-
-
0033617251
-
-
Ador, L.; Camasses, A.; Erbs, P.; Cavarelli, J.; Moras, D.; Gangloff, J.; Eriani, G. J Mol Biol 1999, 288, 231.
-
(1999)
J Mol Biol
, vol.288
, pp. 231
-
-
Ador, L.1
Camasses, A.2
Erbs, P.3
Cavarelli, J.4
Moras, D.5
Gangloff, J.6
Eriani, G.7
-
73
-
-
0034709379
-
-
Wang, L.; Magliery, T.; Liu, D.; Schultz, P. J Am Chem Soc 2000, 122, 5010.
-
(2000)
J Am Chem Soc
, vol.122
, pp. 5010
-
-
Wang, L.1
Magliery, T.2
Liu, D.3
Schultz, P.4
-
74
-
-
0037428393
-
-
Ogata, K.; Jaramillo, A.; Cohen, W; Briand, J.; Conan, F.; Wodak, S. J Biol Chem 2003, 278, 1281.
-
(2003)
J Biol Chem
, vol.278
, pp. 1281
-
-
Ogata, K.1
Jaramillo, A.2
Cohen, W.3
Briand, J.4
Conan, F.5
Wodak, S.6
-
75
-
-
0037157082
-
-
Datta, D.; Wang, P.; Carrico, I. S.; Mayo, S. L.; Tirrell, D. A. J Am Chem Soc 2002, 124, 5652.
-
(2002)
J Am Chem Soc
, vol.124
, pp. 5652
-
-
Datta, D.1
Wang, P.2
Carrico, I.S.3
Mayo, S.L.4
Tirrell, D.A.5
-
77
-
-
0037108748
-
-
Jaramillo, A.; Wernisch, L.; Héry, S.; Wodak, S. Proc Natl Acad Sci USA 2002, 99, 13554.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 13554
-
-
Jaramillo, A.1
Wernisch, L.2
Héry, S.3
Wodak, S.4
-
78
-
-
0041754408
-
-
Becker, O.; Mackerell, A., Jr.; Roux, B.; Watanabe, M., Eds.; Marcel Dekker: New York, Chapter 9
-
Simonson, T. In Computational Biochemistry and Biophysics, Becker, O.; Mackerell, A., Jr.; Roux, B.; Watanabe, M., Eds.; Marcel Dekker: New York, 2001; Chapter 9, pp. 169-197.
-
(2001)
Computational Biochemistry and Biophysics
, pp. 169-197
-
-
Simonson, T.1
-
83
-
-
33746546176
-
-
Zollars, E. S.; Marshall, S. A.; Mayo, S. L. Protein Sci 2006, 15, 2014.
-
(2006)
Protein Sci
, vol.15
, pp. 2014
-
-
Zollars, E.S.1
Marshall, S.A.2
Mayo, S.L.3
|