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Methods in Enzymology

Volumn 295, Issue , 1998, Pages 294-315

Prediction of binding energetics from structure using empirical parameterization

(2) Baker, Brian M a Murphy, Kenneth P a

a NONE

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ANALYTIC METHOD; ARTICLE; BINDING KINETICS; CALCULATION; CONFORMATIONAL TRANSITION; ENERGY TRANSFER; MOLECULAR INTERACTION; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTON TRANSPORT; TECHNIQUE; THERMODYNAMICS;

EID: 0032311808 PISSN: 00766879 EISSN: None Source Type: Book Series
DOI: 10.1016/S0076-6879(98)95045-5 Document Type: Article

Times cited : (134)

References (65)

1
- 0026756702
- K. P. Murphy and E. Freire, Adv. Prot. Chem. 43, 313 (1992).
- (1992) Adv. Prot. Chem. , vol.43 , pp. 313
- Murphy, K.P.¹ Freire, E.²

2
- 0026649261
- K. P. Murphy, V. Bhakuni, D. Xie, and E. Freire, J. Mol. Biol. 227, 293 (1992).
- (1992) J. Mol. Biol. , vol.227 , pp. 293
- Murphy, K.P.¹ Bhakuni, V.² Xie, D.³ Freire, E.⁴

3
- 0026684671
- R. S. Spolar, J. R. Livingstone, and M. T. Record, Jr., Biochemistry 31, 3947 (1992).
- (1992) Biochemistry , vol.31 , pp. 3947
- Spolar, R.S.¹ Livingstone, J.R.² Record Jr., M.T.³

4
- 0027305948
- G. I. Makhatadze and P. L. Privalov, J. Mol. Biol. 232, 639 (1993).
- (1993) J. Mol. Biol. , vol.232 , pp. 639
- Makhatadze, G.I.¹ Privalov, P.L.²

5
- 0027250627
- P. L. Privalov and G. I. Makhatadze, J. Mol. Biol. 232, 660 (1993).
- (1993) J. Mol. Biol. , vol.232 , pp. 660
- Privalov, P.L.¹ Makhatadze, G.I.²

6
- 0027980359
- D. Xie and E. Freire, Proteins 19, 291 (1994).
- (1994) Proteins , vol.19 , pp. 291
- Xie, D.¹ Freire, E.²

7
- 0027537127
- K. P. Murphy, D. Xie, K. C. Garcia, L. M. Amzel, and E. Freire, Proteins 15, 113 (1993).
- (1993) Proteins , vol.15 , pp. 113
- Murphy, K.P.¹ Xie, D.² Garcia, K.C.³ Amzel, L.M.⁴ Freire, E.⁵

8
- 0028102938
- S. D. Burrows, M. L. Doyle, K. P. Murphy, S. G. Franklin, J. R. White, I. Brooks, D. E. McNulty, M. O. Scott, J. R. Knutson, D. Porter, P. R. Young, and P. Hensley, Biochemistry 33, 12741 (1994).
- (1994) Biochemistry , vol.33 , pp. 12741
- Burrows, S.D.¹ Doyle, M.L.² Murphy, K.P.³ Franklin, S.G.⁴ White, J.R.⁵ Brooks, I.⁶ McNulty, D.E.⁷ Scott, M.O.⁸ Knutson, J.R.⁹ Porter, D.¹⁰ Young, P.R.¹¹ Hensley, P.¹²

9
- 0029080864
- J. Gómez and E. Freire, J. Mol. Biol. 252, 337 (1995).
- (1995) J. Mol. Biol. , vol.252 , pp. 337
- Gómez, J.¹ Freire, E.²

10
- 0031547981
- B. M. Baker and K. P. Murphy, J. Mol. Biol. 268, 557 (1997).
- (1997) J. Mol. Biol. , vol.268 , pp. 557
- Baker, B.M.¹ Murphy, K.P.²

11
- 0025886180
- D. H. Williams, J. P. L. Cox, A. J. Doig, M. Gardner, U. Gerhard, P. T. Kaye, A. R. Lal, I. A. Nicholls, C. J. Salter, and R. C. Mitchell, J. Am. Chem. Soc. 113, 7020 (1991).
- (1991) J. Am. Chem. Soc. , vol.113 , pp. 7020
- Williams, D.H.¹ Cox, J.P.L.² Doig, A.J.³ Gardner, M.⁴ Gerhard, U.⁵ Kaye, P.T.⁶ Lal, A.R.⁷ Nicholls, I.A.⁸ Salter, C.J.⁹ Mitchell, R.C.¹⁰

12
- 0027087369
- N. Horton and M. Lewis, Prot. Sci. 1, 169 (1992).
- (1992) Prot. Sci. , vol.1 , pp. 169
- Horton, N.¹ Lewis, M.²

13
- 0027139338
- S. Krystek, I. Stouch, and J. Novotny, J. Mol. Biol. 234, 661 (1993).
- (1993) J. Mol. Biol. , vol.234 , pp. 661
- Krystek, S.¹ Stouch, I.² Novotny, J.³

14
- 0028155689
- J. Åqvist, C. Medina, and J. Samuelsson, Prot. Eng. 7, 385 (1994).
- (1994) Prot. Eng. , vol.7 , pp. 385
- Åqvist, J.¹ Medina, C.² Samuelsson, J.³

15
- 0029119320
- A. Wallqvist, R. L. Jernigan, and D. G. Covell, Prot. Sci. 4, 1881 (1995).
- (1995) Prot. Sci. , vol.4 , pp. 1881
- Wallqvist, A.¹ Jernigan, R.L.² Covell, D.G.³

16
- 0028863592
- M. Cummings, T. N. Hart, and R. J. Read, Prot. Sci. 4, 2087 (1995).
- (1995) Prot. Sci. , vol.4 , pp. 2087
- Cummings, M.¹ Hart, T.N.² Read, R.J.³

17
- 0019889063
- P. D. Ross and S. Subramanian, Biochemstry 20, 3096 (1981).
- (1981) Biochemstry , vol.20 , pp. 3096
- Ross, P.D.¹ Subramanian, S.²

18
- 0014722597
- R. Lumry and S. Rajender, Biopolymers 9, 1125 (1970).
- (1970) Biopolymers , vol.9 , pp. 1125
- Lumry, R.¹ Rajender, S.²

19
- 0021093448
- M. R. Eftink, A. C. Anusiem, and R. L. Biltonen, Biochemistry 22, 3884 (1983).
- (1983) Biochemistry , vol.22 , pp. 3884
- Eftink, M.R.¹ Anusiem, A.C.² Biltonen, R.L.³

20
- 0023473988
- K. J. Breslauer, D. P. Remeta, W. Chou, R. Ferrante, J. Curry, D. Zaunczkowski, J. G. Snyder, and L. A. Marky, Proc. Natl. Acad. Sci. U.S.A. 84, 8922 (1987).
- (1987) Proc. Natl. Acad. Sci. U.S.A. , vol.84 , pp. 8922
- Breslauer, K.J.¹ Remeta, D.P.² Chou, W.³ Ferrante, R.⁴ Curry, J.⁵ Zaunczkowski, D.⁶ Snyder, J.G.⁷ Marky, L.A.⁸

21
- 0029174483
- (B. A. Shirley, ed.), Humana Press, New Jersey
- K. P. Murphy, in "Methods in Molecular Biology" (B. A. Shirley, ed.), Vol. 40, pp. 1-34. Humana Press, New Jersey, 1995.
- (1995) Methods in Molecular Biology , vol.40 , pp. 1-34
- Murphy, K.P.¹

22
- 0028809265
- K. P. Murphy, E. Freire, and Y. Patterson, Proteins 21, 83 (1995).
- (1995) Proteins , vol.21 , pp. 83
- Murphy, K.P.¹ Freire, E.² Patterson, Y.³

23
- 13044290890
- personal communication
- P. Hensley, personal communication (1997).
- (1997)
- Hensley, P.¹

24
- 0025123333
- J. Janin and C. Chothia, J. Biol. Chem. 265, 16027 (1990).
- (1990) J. Biol. Chem. , vol.265 , pp. 16027
- Janin, J.¹ Chothia, C.²

25
- 0029620316
- T. P. Creamer, R. Srinivasan, and G. D. Rose, Biochemistry 34, 16245 (1995).
- (1995) Biochemistry , vol.34 , pp. 16245
- Creamer, T.P.¹ Srinivasan, R.² Rose, G.D.³

26
- 0000159569
- A. D. Robertson and K. P. Murphy, Chem. Rev. 97, 1251 (1997).
- (1997) Chem. Rev. , vol.97 , pp. 1251
- Robertson, A.D.¹ Murphy, K.P.²

27
- 0015222647
- B. Lee and F. M. Richards, J. Mol. Biol. 55, 379 (1971).
- (1971) J. Mol. Biol. , vol.55 , pp. 379
- Lee, B.¹ Richards, F.M.²

28
- 0025906146
- J. R. Livingstone, R. S. Spolar, and M. T. Record, Jr., Biochemistry 30, 4237 (1991).
- (1991) Biochemistry , vol.30 , pp. 4237
- Livingstone, J.R.¹ Spolar, R.S.² Record Jr., M.T.³

29
- 85030360384
- Seattle, WA
- ACCESS, as written by Scott R. Presnell, ZymoGenetics, Seattle, WA.
- ZymoGenetics
- Presnell, S.R.¹

30
- 0003742069
- Department of Biochemistry and Molecular Biology, University College, London
- S. J. Hubbard and J. M. Thornton, NACCESS, Computer Program, Department of Biochemistry and Molecular Biology, University College, London (1993).
- (1993) NACCESS, Computer Program
- Hubbard, S.J.¹ Thornton, J.M.²

31
- 0015866154
- A. Shrake and J. A. Rupley, J. Mol. Biol. 79, 351 (1973).
- (1973) J. Mol. Biol. , vol.79 , pp. 351
- Shrake, A.¹ Rupley, J.A.²

32
- 0021107965
- M. L. Connolly, Science 221, 709 (1983).
- (1983) Science , vol.221 , pp. 709
- Connolly, M.L.¹

33
- 0028014642
- T. N. Bhat, G. A. Bentley, G. Boulot, M. I. Greene, D. Tello, D. A. William, H. Souchon, F. P. Schwarz, R. A. Mariuzza, and R. J. Poljak, Proc. Natl. Acad. Sci. U.S.A. 91, 1089 (1994).
- (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 1089
- Bhat, T.N.¹ Bentley, G.A.² Boulot, G.³ Greene, M.I.⁴ Tello, D.⁵ William, D.A.⁶ Souchon, H.⁷ Schwarz, F.P.⁸ Mariuzza, R.A.⁹ Poljak, R.J.¹⁰

34
- 23444450909
- R. S. Spolar and M. T. Record, Jr., Science 263, 777 (1994).
- (1994) Science , vol.263 , pp. 777
- Spolar, R.S.¹ Record Jr., M.T.²

35
- 9944232242
- S. Cabani, P. Gianni, V. Mollica, and L. Lepori, J. Solution. Chem. 10, 563 (1981).
- (1981) J. Solution. Chem. , vol.10 , pp. 563
- Cabani, S.¹ Gianni, P.² Mollica, V.³ Lepori, L.⁴

36
- 0029114703
- J. Gómez, V. J. Hilser, D. Xie, and E. Freire, Proteins 22, 404 (1995).
- (1995) Proteins , vol.22 , pp. 404
- Gómez, J.¹ Hilser, V.J.² Xie, D.³ Freire, E.⁴

37
- 0026344361
- K. P. Murphy and S. J. Gill, J. Mol. Biol. 222, 699 (1991).
- (1991) J. Mol. Biol. , vol.222 , pp. 699
- Murphy, K.P.¹ Gill, S.J.²

38
- 0025287103
- P. L. Privalov and G. I. Makhatadze, J. Mol. Biol. 213, 385 (1990).
- (1990) J. Mol. Biol. , vol.213 , pp. 385
- Privalov, P.L.¹ Makhatadze, G.I.²

39
- 33748543287
- B. Madan and K. Sharp, J. Phys. Chem. 100, 7713 (1996).
- (1996) J. Phys. Chem. , vol.100 , pp. 7713
- Madan, B.¹ Sharp, K.²

40
- 0029941271
- S. M. Habermann and K. P. Murphy, Prot. Sci. 5, 1229 (1996).
- (1996) Prot. Sci. , vol.5 , pp. 1229
- Habermann, S.M.¹ Murphy, K.P.²

41
- 0031030835
- G. P. Brady and K. A. Sharp, Biophys. J. 72, 913 (1997).
- (1997) Biophys. J. , vol.72 , pp. 913
- Brady, G.P.¹ Sharp, K.A.²

42
- 0030917908
- L. M. Amzel, Proteins 28, 144 (1997).
- (1997) Proteins , vol.28 , pp. 144
- Amzel, L.M.¹

43
- 0028334097
- A. E. Mark and W. F. van Gunsteren, J. Mol. Biol. 240, 167 (1994).
- (1994) J. Mol. Biol. , vol.240 , pp. 167
- Mark, A.E.¹ Van Gunsteren, W.F.²

44
- 0031058541
- M. K. Gilson, J. A. Given, B. L. Bush, and J. A. McCammon, Biophys. J. 72, 1047 (1997).
- (1997) Biophys. J. , vol.72 , pp. 1047
- Gilson, M.K.¹ Given, J.A.² Bush, B.L.³ McCammon, J.A.⁴

45
- 0028127923
- K. P. Murphy, D. Xie, K. S. Thompson, L. M. Amzel, and E. Freire, Proteins 18, 63 (1994).
- (1994) Proteins , vol.18 , pp. 63
- Murphy, K.P.¹ Xie, D.² Thompson, K.S.³ Amzel, L.M.⁴ Freire, E.⁵

46
- 0000180763
- R. L. Baldwin, Proc. Natl. Acad. Sci. U.S.A. 83, 8069 (1986).
- (1986) Proc. Natl. Acad. Sci. U.S.A. , vol.83 , pp. 8069
- Baldwin, R.L.¹

47
- 0028085986
- K. P. Murphy, Biophys. Chem. 51, 311 (1994).
- (1994) Biophys. Chem. , vol.51 , pp. 311
- Murphy, K.P.¹

48
- 0025098571
- K. P. Murphy, P. L. Privalov, and S. J. Gill, Science 247, 559 (1990).
- (1990) Science , vol.247 , pp. 559
- Murphy, K.P.¹ Privalov, P.L.² Gill, S.J.³

49
- 0028178865
- T. P. Creamer and G. D. Rose, Proteins 19, 85 (1994).
- (1994) Proteins , vol.19 , pp. 85
- Creamer, T.P.¹ Rose, G.D.²

50
- 0027991081
- K. H. Lee, D. Xie, E. Freire, and L. M. Amzel, Proteins 20, 68 (1994).
- (1994) Proteins , vol.20 , pp. 68
- Lee, K.H.¹ Xie, D.² Freire, E.³ Amzel, L.M.⁴

51
- 0029900846
- J. A. D'Aquino, J. Gómez, V. J. Hilser, K. H. Lee, L. M. Amzel, and E. Freire, Proteins 25, 143 (1996).
- (1996) Proteins , vol.25 , pp. 143
- D'Aquino, J.A.¹ Gómez, J.² Hilser, V.J.³ Lee, K.H.⁴ Amzel, L.M.⁵ Freire, E.⁶

52
- 0003447443
- McGraw-Hill, New York
- R. W. Gurney, "Ionic Processes in Solution." McGraw-Hill, New York, 1953.
- (1953) Ionic Processes in Solution
- Gurney, R.W.¹

53
- 0008863560
- W. Kauzmann, Adv. Prot. Chem. 14, 1 (1959).
- (1959) Adv. Prot. Chem. , vol.14 , pp. 1
- Kauzmann, W.¹

54
- 0029050481
- A. Holtzer, Biopolymers 35, 595 (1995).
- (1995) Biopolymers , vol.35 , pp. 595
- Holtzer, A.¹

55
- 0029665693
- J. Antosiewicz, J. A. McCammon, and M. K. Gilson, Biochemistry 35, 7819 (1996).
- (1996) Biochemistry , vol.35 , pp. 7819
- Antosiewicz, J.¹ McCammon, J.A.² Gilson, M.K.³

56
- 0029832524
- B. M. Baker and K. P. Murphy, Biophys. J. 71, 2049 (1996).
- (1996) Biophys. J. , vol.71 , pp. 2049
- Baker, B.M.¹ Murphy, K.P.²

57
- 0029933128
- T. M. Lohman, L. B. Overman, M. E. Ferrari, and A. G. Kozlov, Biochemistry 35, 5272 (1996).
- (1996) Biochemistry , vol.35 , pp. 5272
- Lohman, T.M.¹ Overman, L.B.² Ferrari, M.E.³ Kozlov, A.G.⁴

58
- 0026735132
- R. De Cristofaro, J. W. Fenton II, and E. Di Cera, J. Mol. Biol. 226, 263 (1992).
- (1992) J. Mol. Biol. , vol.226 , pp. 263
- De Cristofaro, R.¹ Fenton II, J.W.² Di Cera, E.³

59
- 0003935010
- Wiley, New York
- J. J. Christensen, L. D. Hansen, and R. M. Izatt, "Handbook of Proton Ionization Heats." Wiley, New York, 1976.
- (1976) Handbook of Proton Ionization Heats
- Christensen, J.J.¹ Hansen, L.D.² Izatt, R.M.³

60
- 13044292872
- (A. J. Barret and J. Salveson, eds.), Elsevier Science, Amsterdam
- R. J. Read and M. N. G. James, in "Proteinase Inhibitors" (A. J. Barret and J. Salveson, eds.), p. 302. Elsevier Science, Amsterdam, 1986.
- (1986) Proteinase Inhibitors , pp. 302
- Read, R.J.¹ James, M.N.G.²

61
- 0026582848
- R. Varadarajan, P. R. Connelly, J. M. Sturtevant, and F. M. Richards, Biochemistry 31, 1421 (1992).
- (1992) Biochemistry , vol.31 , pp. 1421
- Varadarajan, R.¹ Connelly, P.R.² Sturtevant, J.M.³ Richards, F.M.⁴

62
- 0027228495
- R. F. Kelley and M. P. O'Connell, Biochemistry 32, 6828 (1993).
- (1993) Biochemistry , vol.32 , pp. 6828
- Kelley, R.F.¹ O'Connell, M.P.²

63
- 0029042647
- G. C. Kresheck, L. B. Vitello, and J. E. Erman, Biochemistry 34, 8398 (1995).
- (1995) Biochemistry , vol.34 , pp. 8398
- Kresheck, G.C.¹ Vitello, L.B.² Erman, J.E.³

64
- 0029794909
- K. H. Pearce, Jr., M. H. Ultsch, R. F. Kelley, A. M. de Vos, and J. A. Wells, Biochemistry 35, 10300 (1996).
- (1996) Biochemistry , vol.35 , pp. 10300
- Pearce Jr., K.H.¹ Ultsch, M.H.² Kelley, R.F.³ De Vos, A.M.⁴ Wells, J.A.⁵

65
- 0021192240
- E. N. Baker and R. E. Hubbard, Prog. Biophys. Mol. Biol. 44, 97 (1984).
- (1984) Prog. Biophys. Mol. Biol. , vol.44 , pp. 97
- Baker, E.N.¹ Hubbard, R.E.²

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