-
1
-
-
33845183463
-
Chiral discrimination and phase transitions in Langmuir monolayers
-
Andelman, D. (1989). Chiral discrimination and phase transitions in Langmuir monolayers. J. Am. Chem. Soc., 111: 6536-6544.
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 6536-6544
-
-
Andelman, D.1
-
2
-
-
0027892574
-
Chiral discrimination in solutions and in Langmuir monolayers
-
Andelman, D. and Orland, H. (1993). Chiral discrimination in solutions and in Langmuir monolayers. J. Am. Chem. Soc., 115: 12322-12329.
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 12322-12329
-
-
Andelman, D.1
Orland, H.2
-
3
-
-
0035896024
-
ConSurf: An algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information
-
Armon, A., Graur, D., and Ben-Tal, N. (2001). ConSurf: An algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information. J. Mol. Biol., 307: 447-463.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 447-463
-
-
Armon, A.1
Graur, D.2
Ben-Tal, N.3
-
4
-
-
0001283767
-
Stereochemistry and molecular recognition in two dimensions
-
Arnett, E.M., Harvey, N.G., and Rose, P.L. (1989). Stereochemistry and molecular recognition in two dimensions. Acc. Chem. Res., 22: 131-148.
-
(1989)
Acc. Chem. Res.
, vol.22
, pp. 131-148
-
-
Arnett, E.M.1
Harvey, N.G.2
Rose, P.L.3
-
5
-
-
0030788568
-
The first step of aminoacylation at the atomic level in histidyl-tRNA synthetase
-
Arnez, J.G., Augustine, J.G., Moras, D., and Francklyn, C.S. (1997). The first step of aminoacylation at the atomic level in histidyl-tRNA synthetase. Proc. Natl. Acad. Sci. (USA), 94: 7144-7149.
-
(1997)
Proc. Natl. Acad. Sci. (USA)
, vol.94
, pp. 7144-7149
-
-
Arnez, J.G.1
Augustine, J.G.2
Moras, D.3
Francklyn, C.S.4
-
6
-
-
0029958175
-
Mirror symmetry breaking at the molecular level
-
Avetisov, V. and Goldanskii, V. (1996). Mirror symmetry breaking at the molecular level. Proc. Natl. Acad. Sci. (USA), 93: 11435-11442.
-
(1996)
Proc. Natl. Acad. Sci. (USA)
, vol.93
, pp. 11435-11442
-
-
Avetisov, V.1
Goldanskii, V.2
-
7
-
-
3843108983
-
Mimicking enzymatic transaminations: Attempts to understand and develop a catalytic asymmetric approach to chiral a-amino acids
-
Bachman, S., Knudsen, K.R., and Jørgensen, K.A. (2004). Mimicking enzymatic transaminations: Attempts to understand and develop a catalytic asymmetric approach to chiral a-amino acids. Org. Biomol. Chem., 2: 2044-2049.
-
(2004)
Org. Biomol. Chem.
, vol.2
, pp. 2044-2049
-
-
Bachman, S.1
Knudsen, K.R.2
Jørgensen, K.A.3
-
8
-
-
0036435882
-
Analysis of catalytic residues in enzyme active sites
-
Bartlett, G.J., Porter, C.T., Borkakoti, N., and Thornton, J.M. (2002). Analysis of catalytic residues in enzyme active sites. J. Mol. Biol., 324: 105-121.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 105-121
-
-
Bartlett, G.J.1
Porter, C.T.2
Borkakoti, N.3
Thornton, J.M.4
-
9
-
-
0027668216
-
Catalysis: Design versus selection
-
Benner S. (1993). Catalysis: Design versus selection. Science, 261: 1402-1403.
-
(1993)
Science
, vol.261
, pp. 1402-1403
-
-
Benner, S.1
-
10
-
-
0034612312
-
Rational design of nascent metalloenzymes
-
Benson, D.E., Wisz, M.S., and Hellinga, H.W. (2000). Rational design of nascent metalloenzymes. Proc. Natl. Acad. Sci. (USA), 97: 6292-6297.
-
(2000)
Proc. Natl. Acad. Sci. (USA)
, vol.97
, pp. 6292-6297
-
-
Benson, D.E.1
Wisz, M.S.2
Hellinga, H.W.3
-
13
-
-
0037073168
-
From chiral counterions to twisted membranes
-
Berthier, D., Buffeteau, T., Léger, J.-M., Oda, R., and Huc, I. (2002). From chiral counterions to twisted membranes. J. Am. Chem. Soc., 124: 13486-13494.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 13486-13494
-
-
Berthier, D.1
Buffeteau, T.2
Léger, J.-M.3
Oda, R.4
Huc, I.5
-
14
-
-
0001101731
-
On the rotation of plane of polarisation of electric waves by a twisted structure
-
Bose, J.C. (1898). On the rotation of plane of polarisation of electric waves by a twisted structure. Proc. Roy Soc. Lond. A, 63: 146-152.
-
(1898)
Proc. Roy Soc. Lond. A
, vol.63
, pp. 146-152
-
-
Bose, J.C.1
-
15
-
-
0016912106
-
Some pertinent aspects of mechanism as determined with small molecules
-
Bruice, T.C. (1976). Some pertinent aspects of mechanism as determined with small molecules. Annu. Rev. Biochem., 45: 331-374.
-
(1976)
Annu. Rev. Biochem.
, vol.45
, pp. 331-374
-
-
Bruice, T.C.1
-
16
-
-
0028824042
-
Protein design: A hierarchic approach
-
Bryson, J.W., Betz, S.F., Lu, H.S., Suich, D.J., Zhou, H.X., O'Neil, K.T., and DeGrado, W.F. (1995). Protein design: A hierarchic approach. Science, 270: 935-941.
-
(1995)
Science
, vol.270
, pp. 935-941
-
-
Bryson, J.W.1
Betz, S.F.2
Lu, H.S.3
Suich, D.J.4
Zhou, H.X.5
O'Neil, K.T.6
DeGrado, W.F.7
-
17
-
-
5744237833
-
Chirality in NMR spectroscopy
-
Buckingham, A.D. (2004). Chirality in NMR spectroscopy. Chem. Phys. Lett., 398: 1-5.
-
(2004)
Chem. Phys. Lett.
, vol.398
, pp. 1-5
-
-
Buckingham, A.D.1
-
19
-
-
0025820796
-
Effect of D-amino acids on Escherichia coli strains with impaired penicillin-binding proteins
-
Caparros, M., Torrecuadrada, J.L.M., and de Pedro, M.A. (1991). Effect of D-amino acids on Escherichia coli strains with impaired penicillin-binding proteins. Res. Microbiol., 142: 345-350.
-
(1991)
Res. Microbiol.
, vol.142
, pp. 345-350
-
-
Caparros, M.1
Torrecuadrada, J.L.M.2
de Pedro, M.A.3
-
20
-
-
0026795665
-
Effect of D-amino acids on structure and synthesis of peptidoglycan in Escherichia coli
-
Caparros, M., Pisabarro, A.G., and de Pedro, M.A. (1992). Effect of D-amino acids on structure and synthesis of peptidoglycan in Escherichia coli. J. Bacteriol., 174: 5549-5559.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 5549-5559
-
-
Caparros, M.1
Pisabarro, A.G.2
de Pedro, M.A.3
-
21
-
-
9944250036
-
Structural aspects of non-ribosomal peptide biosynthesis
-
Challis, G.L. and Naismith, J.H. (2004). Structural aspects of non-ribosomal peptide biosynthesis. Curr. Opin. Str. Biol., 14: 748-756.
-
(2004)
Curr. Opin. Str. Biol.
, vol.14
, pp. 748-756
-
-
Challis, G.L.1
Naismith, J.H.2
-
22
-
-
0014864291
-
Molecular events in the growth inhibition of bacillus subtilis by D-tyrosine
-
Champney, W.S. and Jensen, R.A. (1970). Molecular events in the growth inhibition of bacillus subtilis by D-tyrosine. J. Bacteriol., 104: 107-116.
-
(1970)
J. Bacteriol.
, vol.104
, pp. 107-116
-
-
Champney, W.S.1
Jensen, R.A.2
-
23
-
-
4544230537
-
Distinguishing structural and functional restraints in evolution in order to identify interaction sites
-
Chelliah, V., Chen, L., Blundell, T.L., and Lovell, S.C. (2004). Distinguishing structural and functional restraints in evolution in order to identify interaction sites. J. Mol. Biol., 342: 1487-1504.
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 1487-1504
-
-
Chelliah, V.1
Chen, L.2
Blundell, T.L.3
Lovell, S.C.4
-
24
-
-
27144551715
-
Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design
-
Cheng, G., Qian, B., Samudrala, R., and Baker, D. (2005). Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design. Nucleic Acids Res., 33: 5861-5867.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 5861-5867
-
-
Cheng, G.1
Qian, B.2
Samudrala, R.3
Baker, D.4
-
25
-
-
0030920501
-
A. protein folds in the all-beta and all-alpha classes.
-
Chothia, C., Hubbard, T., Brenner, S., Barns, H., and Murzin, A. (1997). A. protein folds in the all-beta and all-alpha classes. Annu. Rev. Biophys. Biomol. Struct., 26: 597-627.
-
(1997)
Annu. Rev. Biophys. Biomol. Struct.
, vol.26
, pp. 597-627
-
-
Chothia, C.1
Hubbard, T.2
Brenner, S.3
Barns, H.4
Murzin, A.5
-
26
-
-
0015624304
-
Metabolism of D-serine in Escherichia coli K-12: Mechanism of growth inhibition
-
Cosloy, S.D. and McFall, E. (1973). Metabolism of D-serine in Escherichia coli K-12: Mechanism of growth inhibition. J. Bacteriol., 114: 685-694.
-
(1973)
J. Bacteriol.
, vol.114
, pp. 685-694
-
-
Cosloy, S.D.1
McFall, E.2
-
27
-
-
0001190759
-
The interaction of optically active molecules, Proc
-
Craig, D.P., Power, E.A., and Thirunamachandran, T. (1971). The interaction of optically active molecules, Proc. R. Soc. Lond. A, 322: 165-179.
-
(1971)
R. Soc. Lond. A
, vol.322
, pp. 165-179
-
-
Craig, D.P.1
Power, E.A.2
Thirunamachandran, T.3
-
28
-
-
1842857771
-
Asymmetry in the shapes of folded and denatured states of protein
-
Dima, R.I. and Thirumalai, D. (2004). Asymmetry in the shapes of folded and denatured states of protein. J. Phys. Chem. B, 108: 6564-6570.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 6564-6570
-
-
Dima, R.I.1
Thirumalai, D.2
-
29
-
-
25144474487
-
Chiral induction in quinoline-derived oligoamide foldamers: Assignment of helical handedness and role of steric effects
-
Dolain, C., Jiang, H., Léger, J.M., Guionneau, P., and Huc, I. (2005). Chiral induction in quinoline-derived oligoamide foldamers: Assignment of helical handedness and role of steric effects. J. Am. Chem. Soc., 127: 12943-12951.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 12943-12951
-
-
Dolain, C.1
Jiang, H.2
Léger, J.M.3
Guionneau, P.4
Huc, I.5
-
30
-
-
0035965145
-
Prediction of functionally important residues based solely on the computed energetics of protein structure
-
Elcock, A.H. (2001). Prediction of functionally important residues based solely on the computed energetics of protein structure. J. Mol. Biol., 312: 885-896.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 885-896
-
-
Elcock, A.H.1
-
31
-
-
65149103555
-
Optical activity in an artificial chiral media: A terahertz time-domain investigation of Karl F
-
Elezzabi, A.Y. and Sederberg, S. (2009). Optical activity in an artificial chiral media: A terahertz time-domain investigation of Karl F. Lindman's 1920 pioneering experiment. Opt. Express, 17: 6600-6612.
-
(2009)
Lindman's 1920 pioneering experiment. Opt. Express
, vol.17
, pp. 6600-6612
-
-
Elezzabi, A.Y.1
Sederberg, S.2
-
35
-
-
0032839957
-
Chemistry, nutrition, and microbiology of D-amino acids
-
Friedman, M. (1999). Chemistry, nutrition, and microbiology of D-amino acids. J. Agric. Food Chem., 47: 3457-3479.
-
(1999)
J. Agric. Food Chem.
, vol.47
, pp. 3457-3479
-
-
Friedman, M.1
-
36
-
-
12044259093
-
Fluid and solid fibers made of lipid molecular bilayers
-
Fuhrhop, J.H. and Helfrich, W. (1993). Fluid and solid fibers made of lipid molecular bilayers. Chem. Rev., 93: 1565-1582.
-
(1993)
Chem. Rev.
, vol.93
, pp. 1565-1582
-
-
Fuhrhop, J.H.1
Helfrich, W.2
-
37
-
-
0035997506
-
D-amino acids in living higher organisms
-
Fuji, N. (2002). D-amino acids in living higher organisms. Orig. Life Evol. Biosph., 32: 103-127.
-
(2002)
Orig. Life Evol. Biosph.
, vol.32
, pp. 103-127
-
-
Fuji, N.1
-
38
-
-
18444377251
-
Chirality in polysilanes.
-
In Green, M., Nolte, R.J.M., Meijer, E.W. (eds), (series eds). New York: Wiley Interscience, John Wiley & Sons
-
Fujiki, M., Nakashima, H., Toyoda, S., and Koe, J.R. (2003). Chirality in polysilanes. In Green, M., Nolte, R.J.M., Meijer, E.W. (eds), Materials Chirality: Volume 24 of Topics in Stereochemistry Series, and Denmark, S.E., Siegel, J. (series eds). New York: Wiley Interscience, John Wiley & Sons, 209-279.
-
(2003)
Materials Chirality: Volume 24 of Topics in Stereochemistry Series, and Denmark, S.E., Siegel, J.
, pp. 209-279
-
-
Fujiki, M.1
Nakashima, H.2
Toyoda, S.3
Koe, J.R.4
-
39
-
-
0000592694
-
Relationships between enzymatic catalysis and active site structure revealed by applications of site-directed mutagenesis
-
Gerlt, J.A. (1987). Relationships between enzymatic catalysis and active site structure revealed by applications of site-directed mutagenesis. Chem. Rev., 87: 1079-1105.
-
(1987)
Chem. Rev.
, vol.87
, pp. 1079-1105
-
-
Gerlt, J.A.1
-
40
-
-
0034873438
-
Chiral studies across the spectrum of polymer science
-
Green, M.M., Cheon, K., Yang, S., Park, J., Swansburg, S., and W. Liu. (2001). Chiral studies across the spectrum of polymer science. Acc. Chem. Res., 34: 672-680.
-
(2001)
Acc. Chem. Res.
, vol.34
, pp. 672-680
-
-
Green, M.M.1
Cheon, K.2
Yang, S.3
Park, J.4
Swansburg, S.5
Liu, W.6
-
41
-
-
1942512277
-
Chirality of catalysts for stereospecific polymerizations.
-
in Green, M., Nolte, R.J.M., and Meijer, E.W. (eds), (series eds). New York: Wiley Interscience, John Wiley & Sons
-
Guerra, G., Cavallo, L., and Corradini, P. (2003). Chirality of catalysts for stereospecific polymerizations. in Green, M., Nolte, R.J.M., and Meijer, E.W. (eds), Materials Chirality: Volume 24 of Topics in Stereochemistry Series, and Denmark, S. E., Siegel, J. (series eds). New York: Wiley Interscience, John Wiley & Sons, 1-69.
-
(2003)
Materials Chirality: Volume 24 of Topics in Stereochemistry Series, and Denmark, S. E., Siegel, J.
, pp. 1-69
-
-
Guerra, G.1
Cavallo, L.2
Corradini, P.3
-
42
-
-
0041195591
-
Chiralitydependent two-photon absorption probabilities and circular dichroic line strengths: Theory, calculation and measurement
-
Gunde, K.E., Gary, W., Burdicka, G.W., and Richardson, S. (1996). Chiralitydependent two-photon absorption probabilities and circular dichroic line strengths: Theory, calculation and measurement. Chem. Phys., 208: 195-219.
-
(1996)
Chem. Phys.
, vol.208
, pp. 195-219
-
-
Gunde, K.E.1
Gary, W.2
Burdicka, G.W.3
Richardson, S.4
-
43
-
-
0042674397
-
Using a neural network and spatial clustering to predict the location of active sites in enzymes
-
Gutteridge, A., Bartlett, G.J., and Thornton, J.M. (2003). Using a neural network and spatial clustering to predict the location of active sites in enzymes. J. Mol. Biol., 330: 719-734.
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 719-734
-
-
Gutteridge, A.1
Bartlett, G.J.2
Thornton, J.M.3
-
44
-
-
0027177971
-
Metal ion-dependent modulation of the dynamics of a designed protein
-
Handel, T., Williams, S., and DeGrado W. (1993). Metal ion-dependent modulation of the dynamics of a designed protein. Science, 261: 879-885.
-
(1993)
Science
, vol.261
, pp. 879-885
-
-
Handel, T.1
Williams, S.2
DeGrado, W.3
-
45
-
-
0037015037
-
Structural insights into peptide bond formation
-
Hansen, J.L., Schmeing, M.T., Moore, P.B., and Steitz, T.A. (2002). Structural insights into peptide bond formation. Proc. Natl. Acad. Sci. (USA), 99: 11670-11675.
-
(2002)
Proc. Natl. Acad. Sci. (USA)
, vol.99
, pp. 11670-11675
-
-
Hansen, J.L.1
Schmeing, M.T.2
Moore, P.B.3
Steitz, T.A.4
-
46
-
-
0008731726
-
The exciton chirality method and its application to configurational and conformational studies of natural products
-
Harada, N. and Nakanishi, K. (1972). The exciton chirality method and its application to configurational and conformational studies of natural products. Acc. Chem. Res., 5: 257-263.
-
(1972)
Acc. Chem. Res.
, vol.5
, pp. 257-263
-
-
Harada, N.1
Nakanishi, K.2
-
47
-
-
0019496855
-
Cysteine and growth inhibition of Escherichia coli: Threonine deaminase as the target enzyme
-
Harris, C.L. (1981). Cysteine and growth inhibition of Escherichia coli: Threonine deaminase as the target enzyme. J. Bacteriol., 145: 1031-1035.
-
(1981)
J. Bacteriol.
, vol.145
, pp. 1031-1035
-
-
Harris, C.L.1
-
48
-
-
0025190781
-
The handedness of the universe
-
Hegstrom, R. and Kondepudi, D.K. (1990). The handedness of the universe. Sci. Am., 262: 108-115.
-
(1990)
Sci. Am.
, vol.262
, pp. 108-115
-
-
Hegstrom, R.1
Kondepudi, D.K.2
-
49
-
-
0038814072
-
Mutations in distant residues moderately increase the enantioselectivity of Pseudomonas fluorescens esterase towards methyl 3-bromo-2-methylpropanoate and ethyl 3-phenylbutyrate
-
Horsman, G.P., Liu, A.M.F., Henke, E., Bornscheuer, U.T., and Kazlauskas, R.J. (2003). Mutations in distant residues moderately increase the enantioselectivity of Pseudomonas fluorescens esterase towards methyl 3-bromo-2-methylpropanoate and ethyl 3-phenylbutyrate. Chem. Eur. J., 9: 1933-1939.
-
(2003)
Chem. Eur. J.
, vol.9
, pp. 1933-1939
-
-
Horsman, G.P.1
Liu, A.M.F.2
Henke, E.3
Bornscheuer, U.T.4
Kazlauskas, R.J.5
-
50
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996). VMD: Visual molecular dynamics. J. Mol. Graphics, 14: 33-38.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
51
-
-
0004139080
-
-
New York: John Wiley & Sons
-
Jacques, J., Collet, A., and Wilen, S.H. (1981). Enantiomers, Racemates, and Resolutions. New York: John Wiley & Sons.
-
(1981)
Enantiomers, Racemates, and Resolutions
-
-
Jacques, J.1
Collet, A.2
Wilen, S.H.3
-
53
-
-
0942298051
-
Switching of chiral induction in helical aromatic oligoamides using solid state-solution state equilibrium
-
Jiang, H., Dolain, C., Léger, J.M., Gornitzka, H., and Huc, I. (2004). Switching of chiral induction in helical aromatic oligoamides using solid state-solution state equilibrium. J. Am. Chem. Soc., 126: 1034-1035.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 1034-1035
-
-
Jiang, H.1
Dolain, C.2
Léger, J.M.3
Gornitzka, H.4
Huc, I.5
-
54
-
-
1042264059
-
Searching for functional sites in protein structures
-
Jones, S. and Thornton, J.M. (2004). Searching for functional sites in protein structures. Curr. Opin. Chem. Biol., 8: 3-7.
-
(2004)
Curr. Opin. Chem. Biol.
, vol.8
, pp. 3-7
-
-
Jones, S.1
Thornton, J.M.2
-
55
-
-
0002622819
-
Prospects for understanding the origin of the RNA world.
-
In Gesteland, R.F., Cech, T.R., Atkins, J.F. (eds). 2nd ed., Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
-
Joyce, G.F. and Orgel, L.E. (1999). Prospects for understanding the origin of the RNA world. In Gesteland, R.F., Cech, T.R., Atkins, J.F. (eds). The RNA World, 2nd ed., Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, 49-77.
-
(1999)
The RNA World
, pp. 49-77
-
-
Joyce, G.F.1
Orgel, L.E.2
-
56
-
-
23444436172
-
Protein design by binary patterning of polar and nonpolar amino acids
-
Kamtekar, S., Schiffer, J., Xiong, H., Babik, J., and Hecht, M. (1993). Protein design by binary patterning of polar and nonpolar amino acids. Science, 262: 1680-1685.
-
(1993)
Science
, vol.262
, pp. 1680-1685
-
-
Kamtekar, S.1
Schiffer, J.2
Xiong, H.3
Babik, J.4
Hecht, M.5
-
57
-
-
0021634693
-
Mechanism of action of aspartate aminotransferase proposed on the basis of its spatial structure
-
Kirsch, J.F., Eichele, G., Ford, G.C., Vincent, M.G., Jansonius, J.N., Gehring, H., and Christen, P. (1984). Mechanism of action of aspartate aminotransferase proposed on the basis of its spatial structure. J. Mol. Biol., 174: 497-525.
-
(1984)
J. Mol. Biol.
, vol.174
, pp. 497-525
-
-
Kirsch, J.F.1
Eichele, G.2
Ford, G.C.3
Vincent, M.G.4
Jansonius, J.N.5
Gehring, H.6
Christen, P.7
-
58
-
-
0000814596
-
Recent developments in the study of monolayers at the airwater interface
-
Knobler, C.M. (1990). Recent developments in the study of monolayers at the airwater interface. Adv. Chem. Phys., 77: 397-425.
-
(1990)
Adv. Chem. Phys.
, vol.77
, pp. 397-425
-
-
Knobler, C.M.1
-
59
-
-
0034968510
-
Chiral asymmetry in spiral galaxies
-
Kondepudi, D.K. and Durand, D.J. (2001). Chiral asymmetry in spiral galaxies? Chirality, 13: 351-356.
-
(2001)
Chirality
, vol.13
, pp. 351-356
-
-
Kondepudi, D.K.1
Durand, D.J.2
-
60
-
-
0037195144
-
A simple physical model for binding energy hot spots in protein-protein complexes
-
Kortemme, T. and Baker, D. (2002). A simple physical model for binding energy hot spots in protein-protein complexes. Proc. Natl. Acad. Sci. (USA), 99: 14116-14121.
-
(2002)
Proc. Natl. Acad. Sci. (USA)
, vol.99
, pp. 14116-14121
-
-
Kortemme, T.1
Baker, D.2
-
61
-
-
0031006967
-
D-amino acids in animal peptides
-
Kreil, G. (1997). D-amino acids in animal peptides. Annu. Rev. Biochem., 66: 337-345.
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 337-345
-
-
Kreil, G.1
-
62
-
-
0001835708
-
Chiral discriminations- an extended transition monopole model
-
Kuroda, R., Mason S.F., Rodger, C.D., and Seal R.H. (1981). Chiral discriminations- an extended transition monopole model. Mol. Phys., 42: 33-50.
-
(1981)
Mol. Phys.
, vol.42
, pp. 33-50
-
-
Kuroda, R.1
Mason, S.F.2
Rodger, C.D.3
Seal, R.H.4
-
63
-
-
25344479745
-
A stereochemical basis for chiral discrimination: The extended transition monopole model
-
Kuroda, R., Mason S.F., Rodger, C.D., and Seal, R.H. (1978). A stereochemical basis for chiral discrimination: The extended transition monopole model. Chem. Phys. Lett., 57: 1-4.
-
(1978)
Chem. Phys. Lett.
, vol.57
, pp. 1-4
-
-
Kuroda, R.1
Mason, S.F.2
Rodger, C.D.3
Seal, R.H.4
-
64
-
-
0035853280
-
Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins
-
Landgraf, R., Xenarios, I., and Eisenberg, D. (2001). Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. J. Mol. Biol., 307: 1487-1502.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1487-1502
-
-
Landgraf, R.1
Xenarios, I.2
Eisenberg, D.3
-
65
-
-
0030447531
-
Protein clefts in molecular recognition and function
-
Laskowski, R.A., Luscombe, N.M., Swindells, M.B., and Thornton, J.M. (1996). Protein clefts in molecular recognition and function. Protein Sci., 5: 2438-2452.
-
(1996)
Protein Sci.
, vol.5
, pp. 2438-2452
-
-
Laskowski, R.A.1
Luscombe, N.M.2
Swindells, M.B.3
Thornton, J.M.4
-
66
-
-
0015228848
-
Evidence for the difference between the odours of the optical isomers (+)- and (-)-carvone
-
Leitereg, T.J., Guadagni, D.G., Harris, J., Mon, T.R., and Teranishi, R. (1971). Evidence for the difference between the odours of the optical isomers (+)- and (-)-carvone. Nature, 230: 455-456.
-
(1971)
Nature
, vol.230
, pp. 455-456
-
-
Leitereg, T.J.1
Guadagni, D.G.2
Harris, J.3
Mon, T.R.4
Teranishi, R.5
-
67
-
-
0000351208
-
Discriminating interactions between chiral molecules in the liquid phase: Effect on volumetric introduction properties
-
Leporl, L., Mengheri, M., and Mollica, V. (1983). Discriminating interactions between chiral molecules in the liquid phase: Effect on volumetric introduction properties. J. Phys. Chem., 87: 3520-3525.
-
(1983)
J. Phys. Chem.
, vol.87
, pp. 3520-3525
-
-
Leporl, L.1
Mengheri, M.2
Mollica, V.3
-
68
-
-
0029913807
-
An evolutionary trace method defines binding surfaces common to protein families
-
Lichtarge, O., Bourne, H.R., and Cohen, F.E. (1996). An evolutionary trace method defines binding surfaces common to protein families. J. Mol. Biol., 257: 342-358.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 342-358
-
-
Lichtarge, O.1
Bourne, H.R.2
Cohen, F.E.3
-
69
-
-
0036300444
-
Structural clusters of evolutionary trace residues are statistically significant and common in proteins
-
Madabushi, S., Yao, H., Marsh, M., Kristensen, D.M., Philippi, A., Sowa, M.E., and Lichtarge, O. (2002). Structural clusters of evolutionary trace residues are statistically significant and common in proteins. J. Mol. Biol., 316: 139-154.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 139-154
-
-
Madabushi, S.1
Yao, H.2
Marsh, M.3
Kristensen, D.M.4
Philippi, A.5
Sowa, M.E.6
Lichtarge, O.7
-
70
-
-
9444278428
-
Modular peptide synthetases involved in nonribosomal peptide synthesis
-
Marahiel, M.A., Stachelhaus, T., and Mootz, H.D. (1997). Modular peptide synthetases involved in nonribosomal peptide synthesis. Chem. Rev., 97: 2651-2674.
-
(1997)
Chem. Rev.
, vol.97
, pp. 2651-2674
-
-
Marahiel, M.A.1
Stachelhaus, T.2
Mootz, H.D.3
-
71
-
-
56549112362
-
Computational design of biological catalysts
-
Marti, S., Andres, J., Moliner, V., Silla, E., Tunon, I., and Bertran, J. (2008). Computational design of biological catalysts. Chem. Soc. Rev., 37: 2634-2643.
-
(2008)
Chem. Soc. Rev.
, vol.37
, pp. 2634-2643
-
-
Marti, S.1
Andres, J.2
Moliner, V.3
Silla, E.4
Tunon, I.5
Bertran, J.6
-
72
-
-
0001446204
-
Biomolecular homochirality
-
Mason, S. (1988). Biomolecular homochirality. Chem. Soc. Rev., 17: 347-359.
-
(1988)
Chem. Soc. Rev.
, vol.17
, pp. 347-359
-
-
Mason, S.1
-
74
-
-
0024780925
-
The development of concepts of chiral discrimination
-
Mason, S.F. (1989). The development of concepts of chiral discrimination. Chirality, 1: 183-191.
-
(1989)
Chirality
, vol.1
, pp. 183-191
-
-
Mason, S.F.1
-
75
-
-
0001815609
-
The electroweak origin of biomolecular handedness
-
Mason, S.F. and Tranter, G.E. (1985). The electroweak origin of biomolecular handedness. Proc. Roy. Soc. London A, 397: 45-65.
-
(1985)
Proc. Roy. Soc. London A
, vol.397
, pp. 45-65
-
-
Mason, S.F.1
Tranter, G.E.2
-
76
-
-
0344955341
-
Structures and transitions in lipid monolayers at the air/ water interface
-
McConnell, H.M. (1991). Structures and transitions in lipid monolayers at the air/ water interface. Annu. Rev. Phys. Chem., 42: 171-195.
-
(1991)
Annu. Rev. Phys. Chem.
, vol.42
, pp. 171-195
-
-
McConnell, H.M.1
-
77
-
-
85059295957
-
-
Jr. (ed). Mass Extinctions: Process and Evidence. London: Belhaven Press, 133
-
McGhee, G.R. (1989). In Donovan S.K. Jr. (ed). Mass Extinctions: Process and Evidence. London: Belhaven Press, 133.
-
(1989)
In Donovan S.K
-
-
McGhee, G.R.1
-
78
-
-
0025579948
-
Phospholipid and phospholipid-protein monolayers at the air/water interface
-
Möhwald, H. (1990). Phospholipid and phospholipid-protein monolayers at the air/water interface. Annu. Rev. Phys. Chem., 41: 441-476.
-
(1990)
Annu. Rev. Phys. Chem.
, vol.41
, pp. 441-476
-
-
Möhwald, H.1
-
79
-
-
18144403554
-
Improving enzyme properties: When are closer mutations better
-
Morley, K.L. and Kazlauskas, R.J. (2005). Improving enzyme properties: When are closer mutations better. Trends Biotechnol., 23: 231-237.
-
(2005)
Trends Biotechnol.
, vol.23
, pp. 231-237
-
-
Morley, K.L.1
Kazlauskas, R.J.2
-
80
-
-
85059294480
-
Recommendations of the Nomenclature Committee. International Union of Biochemistry and Molecular Biology on the Nomenclature and Classification of Enzymes by the Reactions They Catalyze.
-
Retrieved 2006-03-14.
-
Moss, G.P. Recommendations of the Nomenclature Committee. International Union of Biochemistry and Molecular Biology on the Nomenclature and Classification of Enzymes by the Reactions They Catalyze. http://www. chem.qmul.ac.uk/iubmb/enzyme/. Retrieved 2006-03-14.
-
-
-
Moss, G.P.1
-
81
-
-
0038339629
-
Molecular origin of the recognition of chiral odorant by chiral lipid: Interaction of dipalmitoyl phosphatidyl choline and carvone
-
Nandi, N. (2003). Molecular origin of the recognition of chiral odorant by chiral lipid: Interaction of dipalmitoyl phosphatidyl choline and carvone. J. Phys. Chem. A, 107: 4588-4591.
-
(2003)
J. Phys. Chem. A
, vol.107
, pp. 4588-4591
-
-
Nandi, N.1
-
82
-
-
0942279303
-
Role of secondary level chiral structure in the process of molecular recognition of ligand: Study of model helical peptide
-
Nandi, N. (2004). Role of secondary level chiral structure in the process of molecular recognition of ligand: Study of model helical peptide. J. Phys. Chem. B., 108: 789-797.
-
(2004)
J. Phys. Chem. B.
, vol.108
, pp. 789-797
-
-
Nandi, N.1
-
83
-
-
70350173558
-
Chiral discrimination in the confined environment of biological nanospace: Reactions and interactions involving amino acids and peptides
-
Nandi, N. (2009). Chiral discrimination in the confined environment of biological nanospace: Reactions and interactions involving amino acids and peptides. Int. Rev. Phys. Chem., 28: 111-167.
-
(2009)
Int. Rev. Phys. Chem.
, vol.28
, pp. 111-167
-
-
Nandi, N.1
-
84
-
-
0029912599
-
Molecular origin of the intrinsic bending force for helical morphology observed in chiral amphiphilic assemblies: Concentration and size dependence
-
Nandi, N. and Bagchi, B. (1996). Molecular origin of the intrinsic bending force for helical morphology observed in chiral amphiphilic assemblies: Concentration and size dependence. J. Am. Chem. Soc., 118: 11208-11216.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 11208-11216
-
-
Nandi, N.1
Bagchi, B.2
-
85
-
-
0031076037
-
Prediction of the senses of helical amphiphilic assemblies from effective intermolecular pair potential: Studies on chiral monolayers and bilayers
-
Nandi, N. and Bagchi, B. (1997). Prediction of the senses of helical amphiphilic assemblies from effective intermolecular pair potential: Studies on chiral monolayers and bilayers. J. Phys. Chem. A., 101: 1343-1351.
-
(1997)
J. Phys. Chem. A.
, vol.101
, pp. 1343-1351
-
-
Nandi, N.1
Bagchi, B.2
-
86
-
-
0001930365
-
Microscopic study of chiral interactions in Langmuir monolayer: Monolayers of N-palmitoyl aspartic acid and N-stearoyl serine methyl ester.
-
Nandi, N. and Vollhardt, D. (2000). Microscopic study of chiral interactions in Langmuir monolayer: Monolayers of N-palmitoyl aspartic acid and N-stearoyl serine methyl ester. Colloids Surf. A, 183-185: 67-83.
-
(2000)
Colloids Surf. A
, vol.183-185
, pp. 67-83
-
-
Nandi, N.1
Vollhardt, D.2
-
87
-
-
0037015733
-
Molecular origin of the chiral interaction in biomimetic systems: Dipalmitoylphosphatidylcholine Langmuir monolayer
-
Nandi, N. and Vollhardt, D. (2002a). Molecular origin of the chiral interaction in biomimetic systems: Dipalmitoylphosphatidylcholine Langmuir monolayer. J. Phys. Chem. B., 106: 10144-10149.
-
(2002)
J. Phys. Chem. B.
, vol.106
, pp. 10144-10149
-
-
Nandi, N.1
Vollhardt, D.2
-
88
-
-
0037127937
-
Prediction of the handedness of the chiral domains of amphiphilic monolayers: Monolayers of amino acid amphiphiles.
-
Nandi, N. and Vollhardt, D. (2002b). Prediction of the handedness of the chiral domains of amphiphilic monolayers: Monolayers of amino acid amphiphiles. Colloids Surf. A., 198-200: 207-221.
-
(2002)
Colloids Surf. A.
, vol.198-200
, pp. 207-221
-
-
Nandi, N.1
Vollhardt, D.2
-
89
-
-
0037452009
-
Chiral discrimination effects in Langmuir monolayers: Monolayers of palmitoyl aspartic acid, n-stearoyl serine methyl ester, and n-tetradecyl-?,d dihydroxypentanoic acid amide
-
Nandi, N. and Vollhardt, D. (2003a). Chiral discrimination effects in Langmuir monolayers: Monolayers of palmitoyl aspartic acid, n-stearoyl serine methyl ester, and n-tetradecyl-?,d dihydroxypentanoic acid amide. J. Phys. Chem. B, 107: 3464-3475.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 3464-3475
-
-
Nandi, N.1
Vollhardt, D.2
-
90
-
-
0037940017
-
Correlation between the microscopic and mesoscopic chirality in Langmuir monolayers
-
Nandi, N. and Vollhardt, D. (2003b). Correlation between the microscopic and mesoscopic chirality in Langmuir monolayers. Thin Solid Films, 433: 12-21.
-
(2003)
Thin Solid Films
, vol.433
, pp. 12-21
-
-
Nandi, N.1
Vollhardt, D.2
-
91
-
-
0242334618
-
Effect of molecular chirality on the morphology of biomimetic Langmuir monolayers
-
Nandi, N. and Vollhardt, D. (2003c). Effect of molecular chirality on the morphology of biomimetic Langmuir monolayers. Chem. Rev., 103: 4033-4075.
-
(2003)
Chem. Rev.
, vol.103
, pp. 4033-4075
-
-
Nandi, N.1
Vollhardt, D.2
-
92
-
-
34548563361
-
Chirality and molecular recognition in biomimetic organized films.
-
In Ariga, K. and Nalwa, H.S. (eds), Valencia, CA: American Scientific Publishers
-
Nandi, N. and Vollhardt, D. (2006). Chirality and molecular recognition in biomimetic organized films. In Ariga, K. and Nalwa, H.S. (eds), Bottoms up. Nanofabrication: Supramolecules, Self Assemblies and Organized Films. Valencia, CA: American Scientific Publishers, 5: 1-29.
-
(2006)
Bottoms up. Nanofabrication: Supramolecules, Self Assemblies and Organized Films.
, vol.5
, pp. 1-29
-
-
Nandi, N.1
Vollhardt, D.2
-
93
-
-
34447632663
-
Molecular interactions in amphiphilic assemblies: Theoretical perspective
-
Nandi, N. and Vollhardt, D. (2007). Molecular interactions in amphiphilic assemblies: Theoretical perspective. Acc. Chem. Res., 40: 351-360.
-
(2007)
Acc. Chem. Res.
, vol.40
, pp. 351-360
-
-
Nandi, N.1
Vollhardt, D.2
-
94
-
-
37249070303
-
Chiral discrimination and recognition in Langmuir monolayers
-
Nandi, N. and Vollhardt, D. (2008). Chiral discrimination and recognition in Langmuir monolayers. Curr. Opin. Colloid Surf., 13: 40-46.
-
(2008)
Curr. Opin. Colloid Surf.
, vol.13
, pp. 40-46
-
-
Nandi, N.1
Vollhardt, D.2
-
95
-
-
0036964862
-
Chiral interaction in enantiomeric and racemic dipalmitoyl phosphatidylcholine Langmuir monolayer
-
Nandi, N., Roy, R.K., Anupriya, Upadhaya, S., and Vollhardt, D. (2002). Chiral interaction in enantiomeric and racemic dipalmitoyl phosphatidylcholine Langmuir monolayer. J. Surf. Sci. Technol., 18: 51-66.
-
(2002)
J. Surf. Sci. Technol.
, vol.18
, pp. 51-66
-
-
Nandi, N.1
Roy, R.K.2
Anupriya Upadhaya, S.3
Vollhardt, D.4
-
96
-
-
51449112928
-
Chiral discrimination in stearoyl amine glycerol monolayers
-
Nandi, N., Thirumoorthy, K., and Vollhardt, D. (2008). Chiral discrimination in stearoyl amine glycerol monolayers. Langmuir, 24: 9489-9494.
-
(2008)
Langmuir
, vol.24
, pp. 9489-9494
-
-
Nandi, N.1
Thirumoorthy, K.2
Vollhardt, D.3
-
97
-
-
1642520779
-
Chiral discrimination effects in Langmuir monolayers of 1-O-hexadecyl glycerol
-
Nandi, N., Vollhardt, D., and Brezesinski, G. (2004). Chiral discrimination effects in Langmuir monolayers of 1-O-hexadecyl glycerol. J. Phys. Chem. B, 108: 327-335.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 327-335
-
-
Nandi, N.1
Vollhardt, D.2
Brezesinski, G.3
-
98
-
-
10144249620
-
Molecular pair potential of chiral amino acid amphiphile in Langmuir monolayers on the basis of an atomistic model
-
Nandi, N., Vollhardt, D., and Rudert, R. (2004). Molecular pair potential of chiral amino acid amphiphile in Langmuir monolayers on the basis of an atomistic model. Colloids Surf. A, 250: 279-287.
-
(2004)
Colloids Surf. A
, vol.250
, pp. 279-287
-
-
Nandi, N.1
Vollhardt, D.2
Rudert, R.3
-
99
-
-
14644390842
-
A survey of left-handed helices in protein structures
-
Novotny, M. and Kleywegt, G.J. (2005). A survey of left-handed helices in protein structures. J. Mol. Biol., 347: 231-241.
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 231-241
-
-
Novotny, M.1
Kleywegt, G.J.2
-
100
-
-
0007601986
-
Mutants of neurospora deficient in D-amino acid oxidase
-
Ohnishi, E., Macleod, H., and Horowitz, N.H. (1962). Mutants of neurospora deficient in D-amino acid oxidase. J. Biol. Chem., 237: 138-142.
-
(1962)
J. Biol. Chem.
, vol.237
, pp. 138-142
-
-
Ohnishi, E.1
Macleod, H.2
Horowitz, N.H.3
-
101
-
-
30044441152
-
Optically active polymers with chiral recognition ability.
-
In Green, M., Nolte, R.J.M., Meijer, E.W. (eds), (series eds). New York: Wiley Interscience, John Wiley & Sons
-
Okamoto, Y., Yashima, E., and Yamamoto, C. (2003). Optically active polymers with chiral recognition ability. In Green, M., Nolte, R.J.M., Meijer, E.W. (eds), Materials Chirality: Volume 24 of Topics in Stereochemistry Series, and Denmark, S.E., Siegel, J. (series eds). New York: Wiley Interscience, John Wiley & Sons, 157-207.
-
(2003)
Materials Chirality: Volume 24 of Topics in Stereochemistry Series, and Denmark, S.E., Siegel, J.
, pp. 157-207
-
-
Okamoto, Y.1
Yashima, E.2
Yamamoto, C.3
-
102
-
-
0035940421
-
Thematics: A simple computational predictor of enzyme function from structure
-
Ondrechen, M.J., Clifton, J.G., and Ringe, D. (2001). Thematics: A simple computational predictor of enzyme function from structure. Proc. Natl. Acad. Sci. (USA), 98: 12473-12478.
-
(2001)
Proc. Natl. Acad. Sci. (USA)
, vol.98
, pp. 12473-12478
-
-
Ondrechen, M.J.1
Clifton, J.G.2
Ringe, D.3
-
103
-
-
71849104042
-
Enzyme engineering for enantioselectivity: From trial-and-error to rational design
-
Otten, L.G., Hollmann, F., and Arends, I.W.C.E. (2010). Enzyme engineering for enantioselectivity: From trial-and-error to rational design? Trends Biotechnol., 28: 46-54.
-
(2010)
Trends Biotechnol.
, vol.28
, pp. 46-54
-
-
Otten, L.G.1
Hollmann, F.2
Arends, I.W.C.E.3
-
104
-
-
0033593453
-
Redesigning the substrate specificity of an enzyme by cumulative effects of the mutations of nonactive site residues
-
Oue, S., Okamoto, A., Yano, T., and Kagamiyama, H. (1999). Redesigning the substrate specificity of an enzyme by cumulative effects of the mutations of nonactive site residues. J. Biol. Chem., 274: 2344-2349.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 2344-2349
-
-
Oue, S.1
Okamoto, A.2
Yano, T.3
Kagamiyama, H.4
-
105
-
-
0004081719
-
-
In Pályi, G., Zuccchi, C., Caglioti, L. (eds), Oxford: Elsevier Science S.A.
-
Pályi, G., Zucchi, C., and Caglioti, L. (1999). In Pályi, G., Zuccchi, C., Caglioti, L. (eds), Dimensions of biological homochirality. Advances in Biochirality. Oxford: Elsevier Science S.A., 3-12.
-
(1999)
Dimensions of biological homochirality. Advances in Biochirality
, pp. 3-12
-
-
Pályi, G.1
Zucchi, C.2
Caglioti, L.3
-
106
-
-
0141705410
-
Using protein design for homology detection and active site searches
-
Pei, J., Dokholyan, N.V., Shakhnovich, E.I., and Grishin, N.V. (2003). Using protein design for homology detection and active site searches. Proc. Natl. Acad. Sci. (USA), 100: 11361-11366.
-
(2003)
Proc. Natl. Acad. Sci. (USA)
, vol.100
, pp. 11361-11366
-
-
Pei, J.1
Dokholyan, N.V.2
Shakhnovich, E.I.3
Grishin, N.V.4
-
107
-
-
0030047220
-
Functionalized proteinlike structures from conformationally defined synthetic combinatorial libraries
-
Pérez-Payá, E., Houghten, R.A., and Blondelle S.E. (1996). Functionalized proteinlike structures from conformationally defined synthetic combinatorial libraries. J. Biol. Chem., 271: 4120-4126.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 4120-4126
-
-
Pérez-Payá, E.1
Houghten, R.A.2
Blondelle, S.E.3
-
108
-
-
0345864027
-
The catalytic site atlas: A resource of catalytic sites and residues identified in enzymes using structural data
-
Porter, C.T., Bartlett, G.J., and Thornton, J.M. (2004). The catalytic site atlas: A resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res., 32: D129-D133.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D129-D133
-
-
Porter, C.T.1
Bartlett, G.J.2
Thornton, J.M.3
-
109
-
-
4544365318
-
Chain conformation, crystal structures, and structural disorder in stereoregular polymers
-
In Green, M., Nolte, R.J.M., Meijer, E.W. (eds), (series eds). New York: Wiley Interscience, John Wiley & Sons
-
Rosa, C.D. (2003). Chain conformation, crystal structures, and structural disorder in stereoregular polymers. In Green, M., Nolte, R.J.M., Meijer, E.W. (eds), Materials Chirality: Volume 24 of Topics in Stereochemistry Series, and Denmark, S.E., Siegel, J. (series eds). New York: Wiley Interscience, John Wiley & Sons, 71-155.
-
(2003)
Materials Chirality: Volume 24 of Topics in Stereochemistry Series, and Denmark, S.E., Siegel, J.
, pp. 71-155
-
-
Rosa, C.D.1
-
110
-
-
0016426264
-
Positive selection of general amino acid permease mutants in Saccharomyces cerevisiae
-
Rytka, J. (1975). Positive selection of general amino acid permease mutants in Saccharomyces cerevisiae. J. Bacteriol., 121: 562-570.
-
(1975)
J. Bacteriol.
, vol.121
, pp. 562-570
-
-
Rytka, J.1
-
111
-
-
33845282562
-
Chirality forces
-
Salem, L., Chapuisat, X., Segal, G., Hiberty, P.C., Minot, C., Leforesteir, C., and Sautet, P. (1987). Chirality forces. J. Am. Chem. Soc., 109: 2887-2894.
-
(1987)
J. Am. Chem. Soc.
, vol.109
, pp. 2887-2894
-
-
Salem, L.1
Chapuisat, X.2
Segal, G.3
Hiberty, P.C.4
Minot, C.5
Leforesteir, C.6
Sautet, P.7
-
112
-
-
33744479600
-
Chirality in the RNA world and beyond
-
Sandars, P.G.H. (2005). Chirality in the RNA world and beyond. Int. J. Astrobiology, 4: 49-61.
-
(2005)
Int. J. Astrobiology
, vol.4
, pp. 49-61
-
-
Sandars, P.G.H.1
-
113
-
-
0031583033
-
Information content of individual genetic sequences
-
Schneider, T.D. (1997). Information content of individual genetic sequences. J. Theor. Biol., 189: 427-441.
-
(1997)
J. Theor. Biol.
, vol.189
, pp. 427-441
-
-
Schneider, T.D.1
-
114
-
-
1642370200
-
Lipid tubules: A paradigm for molecularly engineered structures
-
Schnur, J.M. (1993). Lipid tubules: A paradigm for molecularly engineered structures. Science, 262: 1669-1676.
-
(1993)
Science
, vol.262
, pp. 1669-1676
-
-
Schnur, J.M.1
-
115
-
-
0035797725
-
Theory of self-assembled tubules and helical ribbons
-
Selinger, J.V., Spector, M.S., and Schnur, J.M. (2001). Theory of self-assembled tubules and helical ribbons. J. Phys. Chem. B., 105: 7157-7169.
-
(2001)
J. Phys. Chem. B.
, vol.105
, pp. 7157-7169
-
-
Selinger, J.V.1
Spector, M.S.2
Schnur, J.M.3
-
116
-
-
0014667672
-
Sweet taste of D and L-sugars and amino-acids and the steric nature of their chemo-receptor site
-
Shallenberger, R.S., Acree, T.E., and Lee, C.Y. (1969). Sweet taste of D and L-sugars and amino-acids and the steric nature of their chemo-receptor site. Nature, 221: 555-556.
-
(1969)
Nature
, vol.221
, pp. 555-556
-
-
Shallenberger, R.S.1
Acree, T.E.2
Lee, C.Y.3
-
117
-
-
0029559848
-
Asymmetric autocatalysis and amplification of enantiomeric excess of a chiral molecule
-
Soai, K., Shibata, T., Morioka, H., and Choji, K. (1995). Asymmetric autocatalysis and amplification of enantiomeric excess of a chiral molecule. Nature, 378: 767-768.
-
(1995)
Nature
, vol.378
, pp. 767-768
-
-
Soai, K.1
Shibata, T.2
Morioka, H.3
Choji, K.4
-
118
-
-
0034673983
-
Mutational analysis of the epimerization domain in the initiation module PheATE of gramicidin S synthetase
-
Stachelhaus, T. and Walsh, C.T. (2000). Mutational analysis of the epimerization domain in the initiation module PheATE of gramicidin S synthetase. Biochemistry, 39: 5775-5787.
-
(2000)
Biochemistry
, vol.39
, pp. 5775-5787
-
-
Stachelhaus, T.1
Walsh, C.T.2
-
119
-
-
65249108138
-
Absolute configuration of actinophyllic acid as determined through chiroptical data
-
Taniguchi, T., Martin, C.L., Monde, K., Nakanishi, K., Berova, N., and Overman, L.E. (2009). Absolute configuration of actinophyllic acid as determined through chiroptical data. J. Nat. Prod., 72: 430-432.
-
(2009)
J. Nat. Prod.
, vol.72
, pp. 430-432
-
-
Taniguchi, T.1
Martin, C.L.2
Monde, K.3
Nakanishi, K.4
Berova, N.5
Overman, L.E.6
-
120
-
-
0036005636
-
Understanding nature's strategies for enzyme-catalyzed racemization and epimerization
-
Tanner, M.E. (2002). Understanding nature's strategies for enzyme-catalyzed racemization and epimerization. Acc. Chem. Res., 35: 237-246.
-
(2002)
Acc. Chem. Res.
, vol.35
, pp. 237-246
-
-
Tanner, M.E.1
-
122
-
-
0022591495
-
The classification of amino acid conservation
-
Taylor, W.R. (1986). The classification of amino acid conservation. J. Theor. Biol., 119: 205-218.
-
(1986)
J. Theor. Biol.
, vol.119
, pp. 205-218
-
-
Taylor, W.R.1
-
123
-
-
25844439576
-
The correlation between the molecular chirality of the sugar ring on the mesoscopic aggregate morphology in RNA and DNA mimetic systems
-
Thirumoorthy, K. and Nandi, N. (2005). The correlation between the molecular chirality of the sugar ring on the mesoscopic aggregate morphology in RNA and DNA mimetic systems. Chem. Phys. Lett., 414: 336-430.
-
(2005)
Chem. Phys. Lett.
, vol.414
, pp. 336-430
-
-
Thirumoorthy, K.1
Nandi, N.2
-
124
-
-
33744477096
-
Comparison of the intermolecular energy surfaces of amino acids: Orientation-dependent chiral discrimination
-
Thirumoorthy, K. and Nandi, N. (2006). Comparison of the intermolecular energy surfaces of amino acids: Orientation-dependent chiral discrimination. J. Phys. Chem. B, 110: 8840-8849.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 8840-8849
-
-
Thirumoorthy, K.1
Nandi, N.2
-
125
-
-
33745453591
-
Prediction of the handedness of the domains of monolayers of D-N-palmitoyl aspartic acid: Integrated molecular orbital and molecular mechanics based calculation.
-
Thirumoorthy, K., Nandi, N., and Vollhardt, D. (2006). Prediction of the handedness of the domains of monolayers of D-N-palmitoyl aspartic acid: Integrated molecular orbital and molecular mechanics based calculation. Colloids Surf. A, 282-283: 222-226.
-
(2006)
Colloids Surf. A
, vol.282-283
, pp. 222-226
-
-
Thirumoorthy, K.1
Nandi, N.2
Vollhardt, D.3
-
126
-
-
0035815113
-
Evolution of function in protein superfamilies from a structural perspective
-
Todd, A.E., Orengo, C.A., and Thornton, J.M. (2001). Evolution of function in protein superfamilies from a structural perspective. J. Mol. Biol., 307: 1113-1143.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1113-1143
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
127
-
-
14744305761
-
Using a library of structural templates to recognize catalytic sites and explore their evolution in homologous families
-
Torrance, J.W., Bartlett, G.J., Porter, C.T., and Thornton, J.M. (2005). Using a library of structural templates to recognize catalytic sites and explore their evolution in homologous families. J. Mol. Biol., 347: 565-581.
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 565-581
-
-
Torrance, J.W.1
Bartlett, G.J.2
Porter, C.T.3
Thornton, J.M.4
-
128
-
-
33845241718
-
Characterization and isolation of L-to-D-amino-acid-residue isomerase from platypus venom
-
Torres, A.M., Tsampazi, M., Kennett, E.C., Belov, K., Geraghty, D.P., Bansal, P.S., Alewood, P.F., and Kuchel, P.W. (2007). Characterization and isolation of L-to-D-amino-acid-residue isomerase from platypus venom. Amino Acids, 32: 63-68.
-
(2007)
Amino Acids
, vol.32
, pp. 63-68
-
-
Torres, A.M.1
Tsampazi, M.2
Kennett, E.C.3
Belov, K.4
Geraghty, D.P.5
Bansal, P.S.6
Alewood, P.F.7
Kuchel, P.W.8
-
129
-
-
0021741805
-
Penicillin-insensitive incorporation of D-amino acids into cell wall peptidoglycan influences the amount of bound lipoprotein in Escherichia coli
-
Tsuruoka, T., Tamura, A., Miyata, A., Takei, T., Iwamatsu, K., Inouye, S., and Matsuhashi, M. (1984). Penicillin-insensitive incorporation of D-amino acids into cell wall peptidoglycan influences the amount of bound lipoprotein in Escherichia coli. J. Bacteriol., 160: 889-894.
-
(1984)
J. Bacteriol.
, vol.160
, pp. 889-894
-
-
Tsuruoka, T.1
Tamura, A.2
Miyata, A.3
Takei, T.4
Iwamatsu, K.5
Inouye, S.6
Matsuhashi, M.7
-
130
-
-
0002744133
-
Morphology and phase behavior of monolayers
-
Vollhardt, D. (1996). Morphology and phase behavior of monolayers. Adv. Colloid Interface Sci., 64: 143-171.
-
(1996)
Adv. Colloid Interface Sci.
, vol.64
, pp. 143-171
-
-
Vollhardt, D.1
-
131
-
-
0001296027
-
Multifunctional peptide synthetases
-
von Döhren, H., Keller, U., Vater, J., and Zocher, R. (1997). Multifunctional peptide synthetases. Chem. Rev., 97: 2675-2705.
-
(1997)
Chem. Rev.
, vol.97
, pp. 2675-2705
-
-
von Döhren, H.1
Keller, U.2
Vater, J.3
Zocher, R.4
-
132
-
-
0024531901
-
Facilitated target location in biological system
-
von Hippel P.H. and Berg, O.G. (1989). Facilitated target location in biological system. J. Biol. Chem., 264: 675-678.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 675-678
-
-
von Hippel, P.H.1
Berg, O.G.2
-
133
-
-
21444449871
-
FSSA: A novel method for identifying functional signatures from structural alignments
-
Wang, K. and Samudrala, R. (2005). FSSA: A novel method for identifying functional signatures from structural alignments. Bioinformatics, 21: 2969-2977.
-
(2005)
Bioinformatics
, vol.21
, pp. 2969-2977
-
-
Wang, K.1
Samudrala, R.2
-
134
-
-
0000230329
-
Energetics of enzyme catalysis
-
Warshel, A. (1978). Energetics of enzyme catalysis. Proc. Natl. Acad. Sci. (USA), 75: 5250-5254.
-
(1978)
Proc. Natl. Acad. Sci. (USA)
, vol.75
, pp. 5250-5254
-
-
Warshel, A.1
-
135
-
-
33748633480
-
Electrostatic basis for enzyme catalysis
-
Warshel, A., Sharma, P.K., Kato, M., Xiang, Y., Liu, H., and Olsson, M.H.M. (2006). Electrostatic basis for enzyme catalysis. Chem. Rev., 106, 3210-3235.
-
(2006)
Chem. Rev.
, vol.106
, pp. 3210-3235
-
-
Warshel, A.1
Sharma, P.K.2
Kato, M.3
Xiang, Y.4
Liu, H.5
Olsson, M.H.M.6
-
136
-
-
0003450992
-
Enzyme nomenclature 1992: Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the Nomenclature and Classification of Enzymes.
-
San Diego: Published for the International Union of Biochemistry and Molecular Biology by Academic Press.
-
Webb, Edwin C. (1992). Enzyme nomenclature 1992: Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the Nomenclature and Classification of Enzymes. San Diego: Published for the International Union of Biochemistry and Molecular Biology by Academic Press. ISBN 0-12-227164-5. http://www.chem.qmul. ac.uk/iubmb/enzyme/.
-
(1992)
-
-
Webb Edwin, C.1
-
138
-
-
0033564943
-
Interchange of catalytic activity within the 2-enoyl-coenzyme A hydratase/isomerase superfamily based on a common active site template
-
Xiang, H., Luo, L., Taylor, K.L., and Dunaway-Mariano, D. (1999). Interchange of catalytic activity within the 2-enoyl-coenzyme A hydratase/isomerase superfamily based on a common active site template. Biochemistry, 38: 7638-7652.
-
(1999)
Biochemistry
, vol.38
, pp. 7638-7652
-
-
Xiang, H.1
Luo, L.2
Taylor, K.L.3
Dunaway-Mariano, D.4
-
139
-
-
2542470615
-
The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release
-
Youngman, E.M., Brunelle, J.L., Kochaniak, A.B., and Green, R. (2004). The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release. Cell, 117: 589-599.
-
(2004)
Cell
, vol.117
, pp. 589-599
-
-
Youngman, E.M.1
Brunelle, J.L.2
Kochaniak, A.B.3
Green, R.4
-
140
-
-
0024208742
-
The roles of active site hydrogen bonding in cytochrome P-450cam as revealed by site-directed mutagenesis
-
Atkins, W.M. and Sligar, S.G. (1988). The roles of active site hydrogen bonding in cytochrome P-450cam as revealed by site-directed mutagenesis. J. Biol. Chem., 263: 18842-18849.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 18842-18849
-
-
Atkins, W.M.1
Sligar, S.G.2
-
141
-
-
0024566973
-
Molecular recognition in cytochrome P-450: Alteration of regioselective alkane hydroxylation via protein engineering
-
Atkins, W.M. and Sligar, S.G. (1989). Molecular recognition in cytochrome P-450: Alteration of regioselective alkane hydroxylation via protein engineering. J. Am. Chem. Soc., 111: 2715-2717.
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 2715-2717
-
-
Atkins, W.M.1
Sligar, S.G.2
-
142
-
-
2542586375
-
The stereoselectivity and catalytic properties of Xanthobacter autotrophicus 2-[(R)-2-Hydroxypropylthio]ethanesulfonate dehydrogenase are controlled by interactions between C-Terminal Arginine residues and the sulfonate of coenzyme M. Biochemistry
-
Clark, D.D., Boyd, J.M., and Ensign, S.A. (2004). The stereoselectivity and catalytic properties of Xanthobacter autotrophicus 2-[(R)-2-Hydroxypropylthio]ethanesulfonate dehydrogenase are controlled by interactions between C-Terminal Arginine residues and the sulfonate of coenzyme M. Biochemistry, 43: 6763-6771.
-
(2004)
, vol.43
, pp. 6763-6771
-
-
Clark, D.D.1
Boyd, J.M.2
Ensign, S.A.3
-
143
-
-
0029999399
-
Influence of amino acid residue 374 of cytochrome P-450 2D6 (CYP2D6) on the regio- and enantio-selective metabolism of metoprolol
-
Ellis, S.W., Rowland, K., Ackland, M.J., Rekka, E., Simula, A.P., Lennard, M.S., Wolf, C.R., and Tucker, G.T. (1996). Influence of amino acid residue 374 of cytochrome P-450 2D6 (CYP2D6) on the regio- and enantio-selective metabolism of metoprolol. Biochem. J., 316: 647-654.
-
(1996)
Biochem. J.
, vol.316
, pp. 647-654
-
-
Ellis, S.W.1
Rowland, K.2
Ackland, M.J.3
Rekka, E.4
Simula, A.P.5
Lennard, M.S.6
Wolf, C.R.7
Tucker, G.T.8
-
145
-
-
0024457966
-
Site-directed mutageneses of rat liver cytochrome P-450d: Catalytic activities toward benzphetamine and 7-ethoxycoumarin
-
Furuya, H., Shimizu,T., Hirano, K., Hatano, M., Fujii-Kuriyama, Y., Raag, R., and Poulos, T.L. (1989). Site-directed mutageneses of rat liver cytochrome P-450d: Catalytic activities toward benzphetamine and 7-ethoxycoumarin. Biochemistry, 28: 6848-6857.
-
(1989)
Biochemistry
, vol.28
, pp. 6848-6857
-
-
Furuya, H.1
Shimizu, T.2
Hirano, K.3
Hatano, M.4
Fujii-Kuriyama, Y.5
Raag, R.6
Poulos, T.L.7
-
146
-
-
0000589432
-
Catalytic mechanism of cytochrome P-450: Evidence for a distal charge relay
-
Gerber, N.C. and Sligar, S.G. (1992). Catalytic mechanism of cytochrome P-450: Evidence for a distal charge relay. J. Am. Chem. Soc., 114: 8742-8743.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 8742-8743
-
-
Gerber, N.C.1
Sligar, S.G.2
-
147
-
-
0026542989
-
Substrate recognition sites in cytochrome P450 family 2 (CYPB) proteins inferred from comparative analyses of amino acid and coding nucleotide sequences
-
Gotoh, O. (1992). Substrate recognition sites in cytochrome P450 family 2 (CYPB) proteins inferred from comparative analyses of amino acid and coding nucleotide sequences. J. Biol. Chem., 267: 83-90.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 83-90
-
-
Gotoh, O.1
-
148
-
-
0025955439
-
Structure-function relationships of human aromatase cytochrome P-450 using molecular modeling and site-directed mutagenesis
-
Graham-Lorence, S., Khalil, M.W., Lorence, M. C., Mendelson, C.R., and Simpson, E.R. (1991). Structure-function relationships of human aromatase cytochrome P-450 using molecular modeling and site-directed mutagenesis. J. Biol. Chem., 266: 11939-11946.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 11939-11946
-
-
Graham-Lorence, S.1
Khalil, M.W.2
Lorence, M.C.3
Mendelson, C.R.4
Simpson, E.R.5
-
149
-
-
0026562457
-
Site-directed mutagenesis of cytochrome P450s CYP2A1 and CYP2A2: Influence of the distal helix on the kinetics of testosterone hydroxylation
-
Hanioka, N., Gonzalez, F.J., Lindberg, N.A., Liu, G., Gelboin, H.V., and Korzekwa, K.R. (1992). Site-directed mutagenesis of cytochrome P450s CYP2A1 and CYP2A2: Influence of the distal helix on the kinetics of testosterone hydroxylation. Biochemistry, 31: 3364-3370.
-
(1992)
Biochemistry
, vol.31
, pp. 3364-3370
-
-
Hanioka, N.1
Gonzalez, F.J.2
Lindberg, N.A.3
Liu, G.4
Gelboin, H.V.5
Korzekwa, K.R.6
-
150
-
-
0033485933
-
Structural forms of phenprocoumon and warfarin that are metabolized at the active site of CYP2C91
-
He, M., Korzekwa, K.R., Jones, J.P., Rettie, A.E., and Trager, W.F. (1999). Structural forms of phenprocoumon and warfarin that are metabolized at the active site of CYP2C91. Arch. Biochem. Biophys., 372: 16-28.
-
(1999)
Arch. Biochem. Biophys.
, vol.372
, pp. 16-28
-
-
He, M.1
Korzekwa, K.R.2
Jones, J.P.3
Rettie, A.E.4
Trager, W.F.5
-
151
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996). VMD: Visual molecular dynamics. J. Mol. Graphics, 14: 33-38.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
152
-
-
0001541099
-
Uncoupling of the cytochrome P-450cam monooxygenase reaction by a single mutation, threonine-252 to alanine or valine: A possible role of the hydroxy amino acid in oxygen activation
-
Imai, M., Shimada, H., Watanabe, Y., Matsushima-Hibiya, Y., Makino, R., Koga, H., Horiuchi, T., and Ishimura, Y. (1989). Uncoupling of the cytochrome P-450cam monooxygenase reaction by a single mutation, threonine-252 to alanine or valine: A possible role of the hydroxy amino acid in oxygen activation. Proc. Natl. Acad. Sci. (USA), 86: 7823-7827.
-
(1989)
Proc. Natl. Acad. Sci. (USA)
, vol.86
, pp. 7823-7827
-
-
Imai, M.1
Shimada, H.2
Watanabe, Y.3
Matsushima-Hibiya, Y.4
Makino, R.5
Koga, H.6
Horiuchi, T.7
Ishimura, Y.8
-
153
-
-
0024520452
-
Point mutations at threonine-301 modify substrate specificity of rabbit liver microsomal cytochromes P-450 (laurate (ω-1)-hydroxylase and testosterone 16a-hydroxylase)
-
Imai, Y. and Nakamura, M. (1989). Point mutations at threonine-301 modify substrate specificity of rabbit liver microsomal cytochromes P-450 (laurate (ω-1)-hydroxylase and testosterone 16a-hydroxylase). Biochem. Biophys. Res. Commun., 158: 717-722.
-
(1989)
Biochem. Biophys. Res. Commun.
, vol.158
, pp. 717-722
-
-
Imai, Y.1
Nakamura, M.2
-
154
-
-
0026594706
-
Role of Glu318 at the putative distal site in the catalytic function of cytochrome P450d
-
Ishigooka, M., Shimizu, T., Hiroya, K., and Hatano, M. (1992). Role of Glu318 at the putative distal site in the catalytic function of cytochrome P450d. Biochemistry, 31: 1528-1531.
-
(1992)
Biochemistry
, vol.31
, pp. 1528-1531
-
-
Ishigooka, M.1
Shimizu, T.2
Hiroya, K.3
Hatano, M.4
-
155
-
-
0025868688
-
Alteration of high and low spin equilibrium by a single mutation of amino acid 209 in mouse cytochromes P450
-
Iwasaki, M., Juvonen, R., Lindberg, R., and Negishi, M. (1991). Alteration of high and low spin equilibrium by a single mutation of amino acid 209 in mouse cytochromes P450. J. Biol. Chem., 266: 3380-3382.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 3380-3382
-
-
Iwasaki, M.1
Juvonen, R.2
Lindberg, R.3
Negishi, M.4
-
156
-
-
0027400926
-
Chiral recognition at cytochrome P450 1A2 active site: Effects of mutations at the putative distal site on the bindings of asymmetrical axial ligands
-
Krainev, A.G., Shimizu, T., Ishigooka, M., Hiroya, K., and Hatano, M. (1993). Chiral recognition at cytochrome P450 1A2 active site: Effects of mutations at the putative distal site on the bindings of asymmetrical axial ligands. Biochemistry, 32: 1951-1957.
-
(1993)
Biochemistry
, vol.32
, pp. 1951-1957
-
-
Krainev, A.G.1
Shimizu, T.2
Ishigooka, M.3
Hiroya, K.4
Hatano, M.5
-
157
-
-
33746223991
-
Structural basis for stereoselectivity in the (R)- and (S)-hydroxypropylthioethanesulfonate dehydrogenases
-
Krishnakumar, A.M., Nocek, B.P., Clark, D.D., Ensign, S.A., and Peters, J.W. (2006). Structural basis for stereoselectivity in the (R)- and (S)-hydroxypropylthioethanesulfonate dehydrogenases. Biochemistry, 45: 8831-8840.
-
(2006)
Biochemistry
, vol.45
, pp. 8831-8840
-
-
Krishnakumar, A.M.1
Nocek, B.P.2
Clark, D.D.3
Ensign, S.A.4
Peters, J.W.5
-
158
-
-
56049119642
-
Prediction and manipulation of the stereochemistry of enoylreduction in modular polyketide synthases
-
Kwan, D.H., Sun, Y., Schulz, F., Hong, H., Popovic, B., Joalice, C., Sim-Stark, C. Haydock, S.F., and Leadlay, P.F. (2008). Prediction and manipulation of the stereochemistry of enoylreduction in modular polyketide synthases. Chem. Biol., 15: 1231-1240.
-
(2008)
Chem. Biol.
, vol.15
, pp. 1231-1240
-
-
Kwan, D.H.1
Sun, Y.2
Schulz, F.3
Hong, H.4
Popovic, B.5
Joalice, C.6
Sim-Stark, C.7
Haydock, S.F.8
Leadlay, P.F.9
-
159
-
-
59249100026
-
Probing stereoselectivity and pro-chirality of hydride transfer during short-chain alcohol dehydrogenase activity: A combined quantitative 2H NMR and computational approach.
-
Kwiecien, R.A., Ayadi, F., Nemmaoui, Y., Silvestre, V., Zhang, B.L., and Robins, R.J. (2009). Probing stereoselectivity and pro-chirality of hydride transfer during short-chain alcohol dehydrogenase activity: A combined quantitative 2H NMR and computational approach. Arch. Biochem. Biophys., 482: 42-51.
-
(2009)
Arch. Biochem. Biophys.
, vol.482
, pp. 42-51
-
-
Kwiecien, R.A.1
Ayadi, F.2
Nemmaoui, Y.3
Silvestre, V.4
Zhang, B.L.5
Robins, R.J.6
-
160
-
-
0024832753
-
A conserved residue of cytochrome P-450 is involved in heme-oxygen stability and activation.
-
Martinis, S.A., Atkins, W.M., Stayton, P.S., and Sligar, S.G. (1989). A conserved residue of cytochrome P-450 is involved in heme-oxygen stability and activation. J. Am. Chem. Soc., 111: 9252-9253.
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 9252-9253
-
-
Martinis, S.A.1
Atkins, W.M.2
Stayton, P.S.3
Sligar, S.G.4
-
161
-
-
67349134721
-
A comparative analysis of binding sites between mouse CYP2C38 and CYP2C39 based on homology modeling, molecular dynamics simulation and docking studies
-
Meng, X.-Yu, Zheng, Q.C., and Zhang, H.-X. (2009). A comparative analysis of binding sites between mouse CYP2C38 and CYP2C39 based on homology modeling, molecular dynamics simulation and docking studies. Biochim. Biophys. Acta., 1794: 1066-1072.
-
(2009)
Biochim. Biophys. Acta.
, vol.1794
, pp. 1066-1072
-
-
Meng X.-Yu Zheng, Q.C.1
Zhang, H.-X.2
-
162
-
-
4644275807
-
Mechanism of oxidation reactions catalyzed by cytochrome p450 enzymes
-
Meunier, B., de Visser, S.P., and Shaik, S. (2004). Mechanism of oxidation reactions catalyzed by cytochrome p450 enzymes. Chem. Rev., 104: 3947-3980.
-
(2004)
Chem. Rev.
, vol.104
, pp. 3947-3980
-
-
Meunier, B.1
de Visser, S.P.2
Shaik, S.3
-
163
-
-
0032581360
-
Chiral recognition at the heme active site of nitric oxide synthase is markedly enhanced by L-arginine and 5,6,7,8-tetrahydrobiopterin
-
Nakano, K., Sagami, I., Daff, S., and Shimizu, T. (1998). Chiral recognition at the heme active site of nitric oxide synthase is markedly enhanced by L-arginine and 5,6,7,8-tetrahydrobiopterin. Biochem. Biophys. Res. Commun., 248: 767-772.
-
(1998)
Biochem. Biophys. Res. Commun.
, vol.248
, pp. 767-772
-
-
Nakano, K.1
Sagami, I.2
Daff, S.3
Shimizu, T.4
-
165
-
-
0023645035
-
High-resolution crystal structure of cytochrome P450cam
-
Poulos, T.L., Finzel, B.C., and Howard, A.J. (1987). High-resolution crystal structure of cytochrome P450cam. J. Mol. Biol., 195: 687-700.
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 687-700
-
-
Poulos, T.L.1
Finzel, B.C.2
Howard, A.J.3
-
166
-
-
0022273620
-
The 2.6Å crystal structure of Pseudomonas putida cytochrome P-450
-
Poulos, T.L., Finzel, B.C., Gunsalus, I.C., Wagner, G.C., and Kraut, J. (1985). The 2.6Å crystal structure of Pseudomonas putida cytochrome P-450. J. Biol. Chem., 260: 16122-16130.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 16122-16130
-
-
Poulos, T.L.1
Finzel, B.C.2
Gunsalus, I.C.3
Wagner, G.C.4
Kraut, J.5
-
167
-
-
0026352457
-
Crystal structure of the cytochrome P-450cam active site mutant Thr252Ala
-
Raag, R., Martinis, S.A., Sligar, S.G., and Poulos, T.L. (1991). Crystal structure of the cytochrome P-450cam active site mutant Thr252Ala. Biochemistry, 30: 11420-11429.
-
(1991)
Biochemistry
, vol.30
, pp. 11420-11429
-
-
Raag, R.1
Martinis, S.A.2
Sligar, S.G.3
Poulos, T.L.4
-
168
-
-
34248596797
-
Control of oxygenation in lipoxygenase and cyclooxygenase catalysis
-
Schneider, C., Pratt, D.A., Porter, N.A., and Brash, A.R. (2007). Control of oxygenation in lipoxygenase and cyclooxygenase catalysis. Chem. Biol., 14: 473-488.
-
(2007)
Chem. Biol.
, vol.14
, pp. 473-488
-
-
Schneider, C.1
Pratt, D.A.2
Porter, N.A.3
Brash, A.R.4
-
169
-
-
3543038251
-
Active-site characteristics of CYP2C19 and CYP2C9 probed with hydantoin and barbiturate inhibitors
-
Suzuki, H., Kneller, M.B., Rock, D.A. Jones, J.P., Trager, W.F., and Rettiea, A.E. (2004). Active-site characteristics of CYP2C19 and CYP2C9 probed with hydantoin and barbiturate inhibitors. Arch. Biochem. Biophys., 429: 1-15.
-
(2004)
Arch. Biochem. Biophys.
, vol.429
, pp. 1-15
-
-
Suzuki, H.1
Kneller, M.B.2
Rock, D.A.3
Jones, J.P.4
Trager, W.F.5
Rettiea, A.E.6
-
170
-
-
33748633480
-
Electrostatic basis for enzyme catalysis
-
Warshel, A., Sharma, P.K., Kato, M., Xiang, Y., Liu, H., and Olsson, M.H.M. (2006). Electrostatic basis for enzyme catalysis. Chem. Rev., 106: 3210-3235.
-
(2006)
Chem. Rev.
, vol.106
, pp. 3210-3235
-
-
Warshel, A.1
Sharma, P.K.2
Kato, M.3
Xiang, Y.4
Liu, H.5
Olsson, M.H.M.6
-
171
-
-
0042265520
-
Crystal structure of human cytochrome P450 2C9 with bound warfarin
-
Williams, P.A., Cosme, J., Ward, A., Angove, H.C., Vinkovic, D.M., and Jhoti, H. (2003). Crystal structure of human cytochrome P450 2C9 with bound warfarin. Nature, 424: 464-468.
-
(2003)
Nature
, vol.424
, pp. 464-468
-
-
Williams, P.A.1
Cosme, J.2
Ward, A.3
Angove, H.C.4
Vinkovic, D.M.5
Jhoti, H.6
-
172
-
-
0026558679
-
Site-directed mutagenesis study of human placental aromatase
-
Zhou, D., Korzekwa, K.R., Poulos, T., and Chen, S. (1992). Site-directed mutagenesis study of human placental aromatase. J Biol. Chem., 267: 762-768.
-
(1992)
J Biol. Chem.
, vol.267
, pp. 762-768
-
-
Zhou, D.1
Korzekwa, K.R.2
Poulos, T.3
Chen, S.4
-
173
-
-
0025874005
-
Site-specific incorporation of nonnatural residues during in vitro protein biosynthesis with semisynthetic aminoacyl-tRNAs
-
Bain, J.D., Diala, E.S., Glabe, C.G., Wacker, D.A., Lyttle, M.H., Dix, T.A., and Chamberlin, A.R. (1991). Site-specific incorporation of nonnatural residues during in vitro protein biosynthesis with semisynthetic aminoacyl-tRNAs. Biochemistry, 30: 5411-5421.
-
(1991)
Biochemistry
, vol.30
, pp. 5411-5421
-
-
Bain, J.D.1
Diala, E.S.2
Glabe, C.G.3
Wacker, D.A.4
Lyttle, M.H.5
Dix, T.A.6
Chamberlin, A.R.7
-
174
-
-
84879718182
-
-
Freeman, 814
-
Berg, J.M., Tymoczko, J.L., and Stryer, L. (2003). Biochemistry, New York: W.H. Freeman, 814.
-
(2003)
Biochemistry, New York: W.H
-
-
Berg, J.M.1
Tymoczko, J.L.2
Stryer, L.3
-
175
-
-
0019873831
-
Stereochemical control of ribosomal peptidyltransferase reaction: Role of amino acid sidechain orientation of acceptor substrate
-
Bhuta, A., Quiggle, K., Ott, T., Ringer, D., and Chladek, S. (1981). Stereochemical control of ribosomal peptidyltransferase reaction: Role of amino acid sidechain orientation of acceptor substrate. Biochemistry, 20: 8-15.
-
(1981)
Biochemistry
, vol.20
, pp. 8-15
-
-
Bhuta, A.1
Quiggle, K.2
Ott, T.3
Ringer, D.4
Chladek, S.5
-
176
-
-
0025731583
-
Structure and function of telomeres
-
Blackburn, E.H. (1991). Structure and function of telomeres. Nature, 350: 569-573.
-
(1991)
Nature
, vol.350
, pp. 569-573
-
-
Blackburn, E.H.1
-
178
-
-
0014219470
-
D-Tyrosyl RNA: Formation, hydrolysis and utilization for protein synthesis
-
Calendar, R. and Berg, P. (1967). D-Tyrosyl RNA: Formation, hydrolysis and utilization for protein synthesis. J. Mol. Biol., 26: 39-54.
-
(1967)
J. Mol. Biol.
, vol.26
, pp. 39-54
-
-
Calendar, R.1
Berg, P.2
-
179
-
-
0037069377
-
Catalysis of amide synthesis by RNA phosphodiester and hydroxyl groups
-
Chamberlin, S.I. Merino, E.J., and Weeks, K.M. (2002). Catalysis of amide synthesis by RNA phosphodiester and hydroxyl groups. Proc. Natl. Acad. Sci. (USA)., 99: 14688-14693.
-
(2002)
Proc. Natl. Acad. Sci. (USA).
, vol.99
, pp. 14688-14693
-
-
Chamberlin, S.I.1
Merino, E.J.2
Weeks, K.M.3
-
180
-
-
24344440927
-
Experimental and DFT study of pyrazinamide
-
Chis, V., Pirnau, A., Jurca T., Vasilescu, M., Simon, S., Cozar, O., and David, L. (2005). Experimental and DFT study of pyrazinamide. Chem. Phys., 316: 153-163.
-
(2005)
Chem. Phys.
, vol.316
, pp. 153-163
-
-
Chis, V.1
Pirnau, A.2
Jurca, T.3
Vasilescu, M.4
Simon, S.5
Cozar, O.6
David, L.7
-
181
-
-
0026541703
-
The separated enantiomers of 2'-Deoxy-3'-thiacytidine (BCH 189) both inhibit human immunodeficiency virus replication in vitro
-
Coates, J.A.V., Cammack, N., Jenkinson, H.J., Mutton, I.N., Pearson, B.A., Storer, R., Cameron, J.M., Penn, C.R. (1992). The separated enantiomers of 2'-Deoxy-3'-thiacytidine (BCH 189) both inhibit human immunodeficiency virus replication in vitro. Antimicrob. Agent. Chemother., 36: 202-205.
-
(1992)
Antimicrob. Agent. Chemother.
, vol.36
, pp. 202-205
-
-
Coates, J.A.V.1
Cammack, N.2
Jenkinson, H.J.3
Mutton, I.N.4
Pearson, B.A.5
Storer, R.6
Cameron, J.M.7
Penn, C.R.8
-
182
-
-
0038547955
-
Enhanced D-amino acid incorporation into protein by modified ribosomes
-
Dedkova, L.M., Fahmi, N.E., Golovine, S.Y., and Hecht, S.M. (2003). Enhanced D-amino acid incorporation into protein by modified ribosomes. J. Am. Chem. Soc., 125: 6616-6617.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 6616-6617
-
-
Dedkova, L.M.1
Fahmi, N.E.2
Golovine, S.Y.3
Hecht, S.M.4
-
183
-
-
0036863388
-
Molecular aspects of the ribosomal peptidyl transferase
-
Dorner, S., Polacek, N., Schulmeister, U., Panuschka C., and Barta, A. (2002). Molecular aspects of the ribosomal peptidyl transferase. Biochem. Soc. Trans., 30: 1131-1136.
-
(2002)
Biochem. Soc. Trans.
, vol.30
, pp. 1131-1136
-
-
Dorner, S.1
Polacek, N.2
Schulmeister, U.3
Panuschka, C.4
Barta, A.5
-
184
-
-
0029094279
-
Stereospecificity of human DNA polymerases alpha, beta, gamma, delta and epsilon, HIV reverse transcriptase, HSV-1 DNA polymerase, calf thymus terminal transferase and Escherichia coli DNA polymerase I in recognizing D- and L-thymidine 59-triphosphate as substrate
-
Focher, F., Maga, G., Bendiscioli, A., Capobianco, M., Colonna, F., Garbesi, A., and Spadari, S. (1995). Stereospecificity of human DNA polymerases alpha, beta, gamma, delta and epsilon, HIV reverse transcriptase, HSV-1 DNA polymerase, calf thymus terminal transferase and Escherichia coli DNA polymerase I in recognizing D- and L-thymidine 59-triphosphate as substrate. Nucleic Acids Res., 23: 2840-2847.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2840-2847
-
-
Focher, F.1
Maga, G.2
Bendiscioli, A.3
Capobianco, M.4
Colonna, F.5
Garbesi, A.6
Spadari, S.7
-
185
-
-
0034190019
-
Structures, vibrational absorption and vibrational circular dichroism spectra of L-alanine in aqueous solution: A density functional theory and RHF study
-
Friman, K., Bohr, H., Jalkanen, K.J., and Suhai, S. (2000). Structures, vibrational absorption and vibrational circular dichroism spectra of L-alanine in aqueous solution: A density functional theory and RHF study. Chem. Phys., 255: 165-194.
-
(2000)
Chem. Phys.
, vol.255
, pp. 165-194
-
-
Friman, K.1
Bohr, H.2
Jalkanen, K.J.3
Suhai, S.4
-
186
-
-
0038626673
-
-
Revision C.02, Wallingford, CT: Gaussian, Inc
-
Frisch, M.J. et al. (2004). Gaussian 03, Revision C.02, Wallingford, CT: Gaussian, Inc.
-
(2004)
Gaussian 03
-
-
Frisch, M.J.1
-
187
-
-
33748621490
-
The transition state for formation of the peptide, bond in the ribosome.
-
Gindulyte, A., Bashan, A., Agmon, I., Massa, L., Yonath, A., and Karle, J. (2006). The transition state for formation of the peptide, bond in the ribosome. Proc. Natl. Acad. Sci (USA), 103: 13327-13332.
-
(2006)
Proc. Natl. Acad. Sci (USA)
, vol.103
, pp. 13327-13332
-
-
Gindulyte, A.1
Bashan, A.2
Agmon, I.3
Massa, L.4
Yonath, A.5
Karle, J.6
-
188
-
-
0037015037
-
Structural insights into peptide bond formation
-
Hansen, J.L., Schmeing, M.T., Moore P.B., and Steitz, T.A. (2002). Structural insights into peptide bond formation. Proc. Natl. Acad. Sci. (USA), 99: 11670-11675.
-
(2002)
Proc. Natl. Acad. Sci. (USA)
, vol.99
, pp. 11670-11675
-
-
Hansen, J.L.1
Schmeing, M.T.2
Moore, P.B.3
Steitz, T.A.4
-
189
-
-
0025279931
-
Telomeres shorten during ageing of human fibroblasts
-
Harley, C.B., Futcher, A.B., and Greider, C.W. (1990). Telomeres shorten during ageing of human fibroblasts. Nature, 345: 458-460.
-
(1990)
Nature
, vol.345
, pp. 458-460
-
-
Harley, C.B.1
Futcher, A.B.2
Greider, C.W.3
-
190
-
-
0004179861
-
-
H. Weissbach and S. Pestka (eds), Academic Press, New York
-
Harris R.J. and Pestka, S. (1977). in Molecular Mechanisms of Protein Biosynthesis, H. Weissbach and S. Pestka (eds), Academic Press, New York, 413-422.
-
(1977)
Molecular Mechanisms of Protein Biosynthesis
, pp. 413-422
-
-
Harris, R.J.1
Pestka, S.2
-
191
-
-
20644440861
-
Participation of isomeric tRNA's in the partial reactions of protein biosynthesis
-
Hecht, S.M. (1977). Participation of isomeric tRNA's in the partial reactions of protein biosynthesis. Tetrahedron, 33: 1671-1696.
-
(1977)
Tetrahedron
, vol.33
, pp. 1671-1696
-
-
Hecht, S.M.1
-
192
-
-
0008178378
-
Probing the synthetic capabilities of a center of biochemical catalysis
-
Hecht, S.M. (1992). Probing the synthetic capabilities of a center of biochemical catalysis. Acc. Chem. Res., 25: 545-552.
-
(1992)
Acc. Chem. Res.
, vol.25
, pp. 545-552
-
-
Hecht, S.M.1
-
193
-
-
0024293249
-
Ribosomal binding and dipeptide formation by misacylated tRNAPhe's
-
Heckler, T.G., Roesser, J.R., Xu, C., Chang, P.I., and Hecht, S. (1988). Ribosomal binding and dipeptide formation by misacylated tRNAPhe's, Biochemistry, 27: 7254-7262.
-
(1988)
Biochemistry
, vol.27
, pp. 7254-7262
-
-
Heckler, T.G.1
Roesser, J.R.2
Xu, C.3
Chang, P.I.4
Hecht, S.5
-
194
-
-
0020584812
-
Dipeptide formation with misacylated tRNAPhes
-
Heckler, T.G., Zama, Y., Naka, T., and Hecht, S. (1983). Dipeptide formation with misacylated tRNAPhes. J. Biol. Chem., 258: 4492-4495.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 4492-4495
-
-
Heckler, T.G.1
Zama, Y.2
Naka, T.3
Hecht, S.4
-
195
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996). VMD: Visual molecular dynamics. J. Mol. Graphics, 14: 33-38.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
197
-
-
0035313507
-
A comparison of aqueous solvent models used in the calculation of the Raman and ROA spectra of L-alanine
-
Jalkanen, K.J., Nieminen, R.M., Friman, K., Bohr, J., Bohr, H., Wade, R.C., Tajkhorshid, E., and Suhai, S. (2001). A comparison of aqueous solvent models used in the calculation of the Raman and ROA spectra of L-alanine. Chem. Phys., 265: 125-151.
-
(2001)
Chem. Phys.
, vol.265
, pp. 125-151
-
-
Jalkanen, K.J.1
Nieminen, R.M.2
Friman, K.3
Bohr, J.4
Bohr, H.5
Wade, R.C.6
Tajkhorshid, E.7
Suhai, S.8
-
199
-
-
0033482851
-
L-Alanyl-L-alanine in the zwitterionic state: Structures determined in the presence of explicit water molecules and with continuum models using density functional theory
-
Knapp-Mohammady, M., Jalkanen, K.J., Nardi, F., Wade, R.C., and Suhai, S. (1999). L-Alanyl-L-alanine in the zwitterionic state: Structures determined in the presence of explicit water molecules and with continuum models using density functional theory. Chem. Phys., 240: 63-77.
-
(1999)
Chem. Phys.
, vol.240
, pp. 63-77
-
-
Knapp-Mohammady, M.1
Jalkanen, K.J.2
Nardi, F.3
Wade, R.C.4
Suhai, S.5
-
200
-
-
0033557321
-
Molecular basis for the enantioselectivity of HIV-1 reverse transcriptase: Role of the 3'-hydroxyl group of the L-(ß)-ribose in chiral discrimination between D- and L-enantiomers of deoxy- and dideoxy-nucleoside triphosphate analogs
-
Maga, G., Amacker, M., Hübscher, U., Gosselin, G., Imbach, J.-L., Mathé, C., Faraj, A., Sommadossi, J.-P., and Spadari, S. (1999). Molecular basis for the enantioselectivity of HIV-1 reverse transcriptase: Role of the 3'-hydroxyl group of the L-(ß)-ribose in chiral discrimination between D- and L-enantiomers of deoxy- and dideoxy-nucleoside triphosphate analogs. Nucleic Acids Res., 27: 972-978.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 972-978
-
-
Maga, G.1
Amacker, M.2
Hübscher, U.3
Gosselin, G.4
Imbach, J.-L.5
Mathé, C.6
Faraj, A.7
Sommadossi, J.-P.8
Spadari, S.9
-
201
-
-
0003822640
-
-
Oxford: Clarendon Press.
-
Maitland, G.C., Rigby, M., Smith, E.B., and Wakeham, W.A. (1981). Intermolecular Forces: Their Origin and Determination, Oxford: Clarendon Press.
-
(1981)
Intermolecular Forces: Their Origin and Determination
-
-
Maitland, G.C.1
Rigby, M.2
Smith, E.B.3
Wakeham, W.A.4
-
202
-
-
0014219393
-
Ribosome-catalysed reaction of puromycin with a formylmethionine-containing oligonucleotide
-
Monro, R.E. and Marcker, K.A. (1967). Ribosome-catalysed reaction of puromycin with a formylmethionine-containing oligonucleotide. J. Mol. Biol., 25: 347-350.
-
(1967)
J. Mol. Biol.
, vol.25
, pp. 347-350
-
-
Monro, R.E.1
Marcker, K.A.2
-
203
-
-
0014360492
-
Ribosome catalyzed peptidyl transfer: Substrate specificity at the P-site
-
Monro, R.E., Cerna, J., and Marcker, K.A. (1968). Ribosome catalyzed peptidyl transfer: Substrate specificity at the P-site. Proc. Natl. Acad. Sci. (USA), 61: 1042-1049.
-
(1968)
Proc. Natl. Acad. Sci. (USA)
, vol.61
, pp. 1042-1049
-
-
Monro, R.E.1
Cerna, J.2
Marcker, K.A.3
-
204
-
-
0024325562
-
The human telomere terminal transferase enzyme is a ribonucleoprotein that synthesizes TTAGGG repeats
-
Morin, G.B. (1989). The human telomere terminal transferase enzyme is a ribonucleoprotein that synthesizes TTAGGG repeats. Cell, 59: 521-529.
-
(1989)
Cell
, vol.59
, pp. 521-529
-
-
Morin, G.B.1
-
205
-
-
0942279303
-
Role of secondary level chiral structure in the process of molecular recognition of ligand: Study of model helical peptide
-
Nandi, N. (2004). Role of secondary level chiral structure in the process of molecular recognition of ligand: Study of model helical peptide. J. Phys. Chem. B., 108: 789-797.
-
(2004)
J. Phys. Chem. B.
, vol.108
, pp. 789-797
-
-
Nandi, N.1
-
206
-
-
0000603264
-
Puromycine inhibition of protein synthesis: Incorporation of puromycin into peptide chains
-
Nathans, D. (1964). Puromycine inhibition of protein synthesis: Incorporation of puromycin into peptide chains. Proc. Natl. Acad. Sci. (USA), 51: 585-592.
-
(1964)
Proc. Natl. Acad. Sci. (USA)
, vol.51
, pp. 585-592
-
-
Nathans, D.1
-
207
-
-
0001412985
-
Structural requirements for puromycin inhibition of protein synthesis
-
Nathans, D. and Neidle, A. (1963). Structural requirements for puromycin inhibition of protein synthesis. Nature (Lond.), 197: 1076-1077.
-
(1963)
Nature (Lond.)
, vol.197
, pp. 1076-1077
-
-
Nathans, D.1
Neidle, A.2
-
208
-
-
0009758179
-
Evaluation of the density functional approximation on the computation of hydrogen bond interactions
-
Novoa, J.J. and Sosa, C. (1995). Evaluation of the density functional approximation on the computation of hydrogen bond interactions. J. Phys. Chem., 99: 15837-15845.
-
(1995)
J. Phys. Chem.
, vol.99
, pp. 15837-15845
-
-
Novoa, J.J.1
Sosa, C.2
-
209
-
-
0032080678
-
Telomerase from human leukemia cells: Properties and its interaction with deoxynucleoside analogues
-
Pai, R.B., Pai, S.B., Kukhanova, M., Dutschman, G.E., Guo, X., and Cheng, Y. -C. (1998). Telomerase from human leukemia cells: Properties and its interaction with deoxynucleoside analogues. Cancer Res., 58: 1909-1913.
-
(1998)
Cancer Res.
, vol.58
, pp. 1909-1913
-
-
Pai, R.B.1
Pai, S.B.2
Kukhanova, M.3
Dutschman, G.E.4
Guo, X.5
Cheng, Y.-C.6
-
210
-
-
23944434896
-
Accurate interaction energies for argon, krypton, and benzene dimers from perturbation theory based on the Kohn- Sham model
-
Podeszwa, R. and Szalewicz, K. (2005). Accurate interaction energies for argon, krypton, and benzene dimers from perturbation theory based on the Kohn- Sham model. Chem. Phys. Lett., 412: 488-493.
-
(2005)
Chem. Phys. Lett.
, vol.412
, pp. 488-493
-
-
Podeszwa, R.1
Szalewicz, K.2
-
211
-
-
0019876111
-
Donor site of ribosomal peptidyltransferase: Investigation of substrate specificity using 2' (3')-O-(N-Acylaminoacyl) dinucleoside phosphates as models of the 3' terminus of N-acylaminoacyl transfer ribonucleic acid
-
Quiggle, K., Kumar, G., Ott, T.W., Ryu, E.K., and Chladek, S. (1981). Donor site of ribosomal peptidyltransferase: Investigation of substrate specificity using 2' (3')-O-(N-Acylaminoacyl) dinucleoside phosphates as models of the 3' terminus of N-acylaminoacyl transfer ribonucleic acid. Biochemistry, 20: 3480-3485.
-
(1981)
Biochemistry
, vol.20
, pp. 3480-3485
-
-
Quiggle, K.1
Kumar, G.2
Ott, T.W.3
Ryu, E.K.4
Chladek, S.5
-
212
-
-
21044455301
-
Ten remarks on peptide bond formation on the ribosome
-
Rodnina, M.V., Beringer, M., and Bieling, P. (2005). Ten remarks on peptide bond formation on the ribosome. Biochem. Soc. Trans., 33: 493-498.
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 493-498
-
-
Rodnina, M.V.1
Beringer, M.2
Bieling, P.3
-
213
-
-
0024403732
-
Preparation of misacylated aminoacyl-tRNAPhe's useful as probes of the ribosomal acceptor site
-
Roesser, J.R., Xu, C., Payne, R.C. Surratt, C.K., and Hecht, S. (1989). Preparation of misacylated aminoacyl-tRNAPhe's useful as probes of the ribosomal acceptor site. Biochemistry, 28: 5185-5195.
-
(1989)
Biochemistry
, vol.28
, pp. 5185-5195
-
-
Roesser, J.R.1
Xu, C.2
Payne, R.C.3
Surratt, C.K.4
Hecht, S.5
-
214
-
-
27644557445
-
Structural insights into the roles of water and the 2'-hydroxyl of the P site tRNA in the peptidyl transferase reaction
-
Schmeing, T.M., Huang, K.S., Kitchen, D.E., Strobel, S.A., and Steitz, T.A. (2005). Structural insights into the roles of water and the 2'-hydroxyl of the P site tRNA in the peptidyl transferase reaction. Mol. Cell., 20: 437-448.
-
(2005)
Mol. Cell.
, vol.20
, pp. 437-448
-
-
Schmeing, T.M.1
Huang, K.S.2
Kitchen, D.E.3
Strobel, S.A.4
Steitz, T.A.5
-
215
-
-
70449234472
-
Purification and properties of tyrosine-activating enzyme of hog pancreas
-
Schweet, R.S. and Allen, E. (1958). Purification and properties of tyrosine-activating enzyme of hog pancreas. J. Biol. Chem., 233: 1104-1108.
-
(1958)
J. Biol. Chem.
, vol.233
, pp. 1104-1108
-
-
Schweet, R.S.1
Allen, E.2
-
216
-
-
23944472625
-
What are the roles of substrate-assisted catalysis and proximity effects in peptide bond formation by the ribosome
-
Sharma, P.K., Xiang, Y., Kato, M., and Warshel, A. (2005). What are the roles of substrate-assisted catalysis and proximity effects in peptide bond formation by the ribosome? Biochemistry, 44: 11307-11310.
-
(2005)
Biochemistry
, vol.44
, pp. 11307-11310
-
-
Sharma, P.K.1
Xiang, Y.2
Kato, M.3
Warshel, A.4
-
217
-
-
2542564300
-
The ribosome as an entropy trap
-
Sievers, A., Beringer, M., Rodnina, M.V., and Wolfenden, R. (2004). The ribosome as an entropy trap. Proc. Natl. Acad. Sci. (USA), 101: 7897-7901.
-
(2004)
Proc. Natl. Acad. Sci. (USA)
, vol.101
, pp. 7897-7901
-
-
Sievers, A.1
Beringer, M.2
Rodnina, M.V.3
Wolfenden, R.4
-
218
-
-
0031822118
-
Molecular basis for the antiviral and anticancer activities of unnatural L-beta-nucleosides
-
Spadari S., Maga G., Verri, A., and Focher, F. (1998). Molecular basis for the antiviral and anticancer activities of unnatural L-beta-nucleosides. Expert Opin. Investig. Drugs., 8: 1285-1300.
-
(1998)
Expert Opin. Investig. Drugs.
, vol.8
, pp. 1285-1300
-
-
Spadari, S.1
Maga, G.2
Verri, A.3
Focher, F.4
-
219
-
-
0018624914
-
The -C-C-A end of tRNA and its role in protein biosynthesis
-
Sprinzl, M. and Cramer, F. (1979). The -C-C-A end of tRNA and its role in protein biosynthesis. Prog. Nucleic Acid Res. Mol. Biol., 22: 1-69.
-
(1979)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.22
, pp. 1-69
-
-
Sprinzl, M.1
Cramer, F.2
-
220
-
-
0037668349
-
The puromycin route to assess stereo- and regiochemical constraints on peptide bond formation in eukaryotic ribosomes
-
Starck, S.R., Qi, X., Olsen, B.N., and Roberts, R.W. (2003). The puromycin route to assess stereo- and regiochemical constraints on peptide bond formation in eukaryotic ribosomes. J. Am. Chem. Soc., 125: 8090-8091.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 8090-8091
-
-
Starck, S.R.1
Qi, X.2
Olsen, B.N.3
Roberts, R.W.4
-
221
-
-
0001152446
-
Structure and vibrational spectra of the zwitterion L-alanine in the presence of explicit water molecules: A density functional analysis
-
Tajkhorshid, E., Jalkanen, K.J., and Suhai, S. (1998). Structure and vibrational spectra of the zwitterion L-alanine in the presence of explicit water molecules: A density functional analysis. J. Phys. Chem., 102: 5899-5913.
-
(1998)
J. Phys. Chem.
, vol.102
, pp. 5899-5913
-
-
Tajkhorshid, E.1
Jalkanen, K.J.2
Suhai, S.3
-
222
-
-
0034072173
-
Interaction of deoxyguanosine nucleotide analogs with human telomerase
-
Tendian, S.W. and Parker, W.B. (2000). Interaction of deoxyguanosine nucleotide analogs with human telomerase. Mol. Pharmacol., 57: 695-699.
-
(2000)
Mol. Pharmacol.
, vol.57
, pp. 695-699
-
-
Tendian, S.W.1
Parker, W.B.2
-
223
-
-
33744477096
-
Comparison of the intermolecular energy surfaces of amino acids: Orientation-dependent chiral discrimination
-
Thirumoorthy, K. and Nandi, N. (2006). Comparison of the intermolecular energy surfaces of amino acids: Orientation-dependent chiral discrimination. J. Phys. Chem. B., 110: 8840-8849.
-
(2006)
J. Phys. Chem. B.
, vol.110
, pp. 8840-8849
-
-
Thirumoorthy, K.1
Nandi, N.2
-
224
-
-
34548561996
-
Homochiral preference in peptide synthesis in ribosome: Role of amino terminal, peptidyl terminal and U2620
-
Thirumoorthy, K. and Nandi, N. (2007a). Homochiral preference in peptide synthesis in ribosome: Role of amino terminal, peptidyl terminal and U2620. J. Phys. Chem. B, 111: 9999-10004.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 9999-10004
-
-
Thirumoorthy, K.1
Nandi, N.2
-
225
-
-
34547661986
-
Water catalyzed peptide bond formation in L-alanine dipeptide: The role of weak hydrogen bonding
-
Thirumoorthy, K. and Nandi, N. (2007b). Water catalyzed peptide bond formation in L-alanine dipeptide: The role of weak hydrogen bonding. J. Mol. Str. (Theo Chem), 818: 107-118.
-
(2007)
J. Mol. Str. (Theo Chem)
, vol.818
, pp. 107-118
-
-
Thirumoorthy, K.1
Nandi, N.2
-
226
-
-
49349097901
-
Role of chirality of the sugar ring in the ribosomal peptide synthesis
-
Thirumoorthy, K. and Nandi, N. (2008). Role of chirality of the sugar ring in the ribosomal peptide synthesis. J. Phys. Chem. B., 112: 9187-9195.
-
(2008)
J. Phys. Chem. B.
, vol.112
, pp. 9187-9195
-
-
Thirumoorthy, K.1
Nandi, N.2
-
227
-
-
24644461086
-
Mechanism of peptide bond synthesis on the ribosome
-
Trobro, S. and Åqvist, J. (2005). Mechanism of peptide bond synthesis on the ribosome. Proc. Natl. Acad. Sci. (USA), 102: 12395-12400.
-
(2005)
Proc. Natl. Acad. Sci. (USA)
, vol.102
, pp. 12395-12400
-
-
Trobro, S.1
Åqvist, J.2
-
228
-
-
0001246313
-
State of the art in counterpoise theory
-
van Duijneveldt, F.B.V., van Duijneveldt-van de Rijdt, J.G.C.M., and van Lenthe, J.H. (1994). State of the art in counterpoise theory. Chem. Rev., 94: 1873-1885.
-
(1994)
Chem. Rev.
, vol.94
, pp. 1873-1885
-
-
van Duijneveldt, F.B.V.1
van Duijneveldt-van de Rijdt, J.G.C.M.2
van Lenthe, J.H.3
-
229
-
-
33846616455
-
Exploring the mechanism of protein synthesis with modified substrates and novel intermediate mimics
-
Weinger, J.S. and Strobel, S. (2007). Exploring the mechanism of protein synthesis with modified substrates and novel intermediate mimics. Blood Cells Mol. Dis., 38: 110-116.
-
(2007)
Blood Cells Mol. Dis.
, vol.38
, pp. 110-116
-
-
Weinger, J.S.1
Strobel, S.2
-
230
-
-
7544220590
-
Substrate assisted catalysis of peptide bond formation by the ribosome
-
Weinger, J.S., Parnell, K.M., Dorner, S., Green, R., and Strobel, S. (2004). Substrate assisted catalysis of peptide bond formation by the ribosome. Nature Struc. Mol. Biol., 11: 1101-1106.
-
(2004)
Nature Struc. Mol. Biol.
, vol.11
, pp. 1101-1106
-
-
Weinger, J.S.1
Parnell, K.M.2
Dorner, S.3
Green, R.4
Strobel, S.5
-
231
-
-
0035134013
-
Using Kohn-Sham orbitals in symmetry- adapted perturbation theory to investigate intermolecular interactions
-
Williams, H.L. and Chabalowski, C.F. (2001). Using Kohn-Sham orbitals in symmetry- adapted perturbation theory to investigate intermolecular interactions. J. Phys. Chem. A., 105: 646-659.
-
(2001)
J. Phys. Chem. A.
, vol.105
, pp. 646-659
-
-
Williams, H.L.1
Chabalowski, C.F.2
-
232
-
-
0028207542
-
Chiral discrimination of enantiomeric 2'-deoxythymidine 5'-triphosphate by HIV-1 reverse transcriptase and eukaryotic DNA polymerases
-
Yamaguchi T., Iwanami N., Shudo, K., and Saneyoshi, M. (1994). Chiral discrimination of enantiomeric 2'-deoxythymidine 5'-triphosphate by HIV-1 reverse transcriptase and eukaryotic DNA polymerases. Biochem. Biophys. Res. Commun., 200: 1023-1027.
-
(1994)
Biochem. Biophys. Res. Commun.
, vol.200
, pp. 1023-1027
-
-
Yamaguchi, T.1
Iwanami, N.2
Shudo, K.3
Saneyoshi, M.4
-
233
-
-
0034694517
-
Recognition of 2'-deoxy-L-ribonucleoside 5'-triphosphates by human telomerase
-
Yamaguchi, T., Yamada, R., Tomikawa, A., Shudo, K., Saito, M. Ishikawa, F., and Saneyoshi, M. (2000). Recognition of 2'-deoxy-L-ribonucleoside 5'-triphosphates by human telomerase. Biochem. Biophys. Res. Commun., 279: 475-481.
-
(2000)
Biochem. Biophys. Res. Commun.
, vol.279
, pp. 475-481
-
-
Yamaguchi, T.1
Yamada, R.2
Tomikawa, A.3
Shudo, K.4
Saito, M.5
Ishikawa, F.6
Saneyoshi, M.7
-
234
-
-
0019875775
-
Discrimination between D- and L-tyrosyl transfer ribonucleic acids in peptide chain elongation
-
Yamane, T., Miller, L., and Hopfield, J.J. (1981). Discrimination between D- and L-tyrosyl transfer ribonucleic acids in peptide chain elongation. Biochemistry, 20: 7059-7064.
-
(1981)
Biochemistry
, vol.20
, pp. 7059-7064
-
-
Yamane, T.1
Miller, L.2
Hopfield, J.J.3
-
235
-
-
2542470615
-
The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release
-
Youngman, E.M., Brunelle, J.L., Kochaniak, A.B., and Green, R. (2004). The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release. Cell, 117: 589-599.
-
(2004)
Cell
, vol.117
, pp. 589-599
-
-
Youngman, E.M.1
Brunelle, J.L.2
Kochaniak, A.B.3
Green, R.4
-
236
-
-
8344271978
-
Functional aspects of ribosomal architecture: Symmetry, chirality and regulation
-
Zarivach, R., Bashan, A., Berisio, R., Harms, J., Auerbach, T., Schluenzen, F., Bartels, H., Baram, D., Pyetan, E., Sittner, A., Amit, M., Hansen, H.A.S., Kessler, M., Liebe, C., Wolff, A., Agmon, I., and Yonath, A. (2004). Functional aspects of ribosomal architecture: Symmetry, chirality and regulation. J. Phys. Org. Chem., 17: 901-912.
-
(2004)
J. Phys. Org. Chem.
, vol.17
, pp. 901-912
-
-
Zarivach, R.1
Bashan, A.2
Berisio, R.3
Harms, J.4
Auerbach, T.5
Schluenzen, F.6
Bartels, H.7
Baram, D.8
Pyetan, E.9
Sittner, A.10
Amit, M.11
Hansen, H.A.S.12
Kessler, M.13
Liebe, C.14
Wolff, A.15
Agmon, I.16
Yonath, A.17
-
237
-
-
28944452159
-
Structures and properties of cytosine-BX3 (X=F, Cl) complexes: An investigation with DFT and MP2 methods
-
Zhang, S.G. and Yang, P. (2005). Structures and properties of cytosine-BX3 (X=F, Cl) complexes: An investigation with DFT and MP2 methods. J. Mol. Struc. (Theo Chem), 757: 77-86.
-
(2005)
J. Mol. Struc. (Theo Chem)
, vol.757
, pp. 77-86
-
-
Zhang, S.G.1
Yang, P.2
-
238
-
-
0032103824
-
Rhizomucor miehei lipase as the catalyst in the resolution of chiral compounds: An overview
-
Alcántara, A.R., de Fuentes, I.E., and Sinisterra, J.V. (1998). Rhizomucor miehei lipase as the catalyst in the resolution of chiral compounds: An overview. Chem. Phys. Lipids, 93: 169-184.
-
(1998)
Chem. Phys. Lipids
, vol.93
, pp. 169-184
-
-
Alcántara, A.R.1
de Fuentes, I.E.2
Sinisterra, J.V.3
-
239
-
-
0032031614
-
Epoxide hydrolases: New tools for the synthesis of fine organic chemicals
-
Archelas, A. and Furstoss, R. (1998). Epoxide hydrolases: New tools for the synthesis of fine organic chemicals. Trends Biotechnol., 16: 108-116.
-
(1998)
Trends Biotechnol.
, vol.16
, pp. 108-116
-
-
Archelas, A.1
Furstoss, R.2
-
240
-
-
0030869888
-
Epoxide hydrolases as asymmetric catalysts
-
Archer, I.V.J. (1997). Epoxide hydrolases as asymmetric catalysts. Tetrahedron, 53: 15617-15662.
-
(1997)
Tetrahedron
, vol.53
, pp. 15617-15662
-
-
Archer, I.V.J.1
-
241
-
-
0032849109
-
Detoxification of environmental mutagens and carcinogens: Structure, mechanism and evolution of liver epoxide hydrolase
-
Argiriadi, M.A., Morisseau, C., Hammock, B.D., and Christianson, D.W. (1999). Detoxification of environmental mutagens and carcinogens: Structure, mechanism and evolution of liver epoxide hydrolase. Proc. Natl. Acad. Sci. (USA), 96: 10637-10642.
-
(1999)
Proc. Natl. Acad. Sci. (USA)
, vol.96
, pp. 10637-10642
-
-
Argiriadi, M.A.1
Morisseau, C.2
Hammock, B.D.3
Christianson, D.W.4
-
243
-
-
0037708583
-
There's no industrial biocatalyst like hydrolase: Development of scalable enantioselective processes using hydrolytic enzymes
-
Chikusa, Y., Hirayama, Y., Ikunaka, M., Inoue, T., Kamiyama, S., Moriwaki, M., Nishimoto, Y., Nomoto, F., Ogawa, K., Ohno, T., Otsuka, K., Sakota, A.K., Shirasaka, N., Uzura, A., and Uzura, K. (2003). There's no industrial biocatalyst like hydrolase: Development of scalable enantioselective processes using hydrolytic enzymes. Org. Process Res. Development, 7: 289-296.
-
(2003)
Org. Process Res. Development
, vol.7
, pp. 289-296
-
-
Chikusa, Y.1
Hirayama, Y.2
Ikunaka, M.3
Inoue, T.4
Kamiyama, S.5
Moriwaki, M.6
Nishimoto, Y.7
Nomoto, F.8
Ogawa, K.9
Ohno, T.10
Otsuka, K.11
Sakota, A.K.12
Shirasaka, N.13
Uzura, A.14
Uzura, K.15
-
244
-
-
0028134021
-
A structural basis for the chiral preferences of lipases
-
Cygler, M., Grochulski, P., Kazlauskas, R.J., Schrag, J.D., Bouthillier, F., Rubin, B., Serreqi, A.N., and Gupta, A.K. (1994). A structural basis for the chiral preferences of lipases. J. Am. Chem. Soc., 116: 3180-3186.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 3180-3186
-
-
Cygler, M.1
Grochulski, P.2
Kazlauskas, R.J.3
Schrag, J.D.4
Bouthillier, F.5
Rubin, B.6
Serreqi, A.N.7
Gupta, A.K.8
-
245
-
-
0031556926
-
Covalent inhibition of digestive lipases: An in vitro study
-
Gargouri, Y., Ransac, S. and Verger, R. (1997). Covalent inhibition of digestive lipases: An in vitro study. Biochim. Biophys. Acta., 1344: 6-37.
-
(1997)
Biochim. Biophys. Acta.
, vol.1344
, pp. 6-37
-
-
Gargouri, Y.1
Ransac, S.2
Verger, R.3
-
246
-
-
0028327132
-
Analogs of reaction intermediates identify a unique substrate binding site in Candida rugosa Lipase
-
Grochulski, P., Bouthillier, F., Kazlauskas, R.J., Serreqi, A.N., Schrag, J.D., Ziomek, E., and Cygler, M. (1994). Analogs of reaction intermediates identify a unique substrate binding site in Candida rugosa Lipase. Biochemistry, 33: 3494-3500.
-
(1994)
Biochemistry
, vol.33
, pp. 3494-3500
-
-
Grochulski, P.1
Bouthillier, F.2
Kazlauskas, R.J.3
Serreqi, A.N.4
Schrag, J.D.5
Ziomek, E.6
Cygler, M.7
-
247
-
-
0027160452
-
Insights into interfacial activation from an open structure of Candida rugosa lipase
-
Grochulski, P., Li, Y., Schrag, J.D., Bouthillier, F., Smith, P., Harrison, D., Rubin, B., and Cygler, M. (1993). Insights into interfacial activation from an open structure of Candida rugosa lipase. J. Biol. Chem., 268: 12843-12847.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 12843-12847
-
-
Grochulski, P.1
Li, Y.2
Schrag, J.D.3
Bouthillier, F.4
Smith, P.5
Harrison, D.6
Rubin, B.7
Cygler, M.8
-
248
-
-
0028103723
-
Two conformational states of Candida rugosa lipase
-
Grochulski, P., Li, Y., Schrag, J.D. and Cygler, M. (1994). Two conformational states of Candida rugosa lipase. Protein Sci., 3: 82-91.
-
(1994)
Protein Sci.
, vol.3
, pp. 82-91
-
-
Grochulski, P.1
Li, Y.2
Schrag, J.D.3
Cygler, M.4
-
249
-
-
33751280486
-
Insights into the reaction mechanism of soluble epoxide hydrolase from theoretical active site mutants
-
Hopmann, K.H. and Himo, F. (2006). Insights into the reaction mechanism of soluble epoxide hydrolase from theoretical active site mutants. J. Phys. Chem. B., 110: 21299-21310.
-
(2006)
J. Phys. Chem. B.
, vol.110
, pp. 21299-21310
-
-
Hopmann, K.H.1
Himo, F.2
-
250
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996). VMD: Visual molecular dynamics. J. Mol. Graphics, 14: 33-38.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
251
-
-
0032102831
-
Structural investigations of the regio- and enantioselectivity of lipases
-
Lang, D.A. and Dijkstra, B.W. (1998). Structural investigations of the regio- and enantioselectivity of lipases. Chem. Phys. Lipids, 93: 115-122.
-
(1998)
Chem. Phys. Lipids
, vol.93
, pp. 115-122
-
-
Lang, D.A.1
Dijkstra, B.W.2
-
252
-
-
0034829750
-
A theoretical examination of the acid-catalyzed and noncatalyzed ring-opening reaction of an oxirane by nucleophilic addition of acetate. Implications to epoxide hydrolases.
-
Lau, E.Y., Newby, Z.E., and Bruice, T.C. (2001). A theoretical examination of the acid-catalyzed and noncatalyzed ring-opening reaction of an oxirane by nucleophilic addition of acetate. Implications to epoxide hydrolases. J. Am. Chem. Soc., 123: 3350-3357.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 3350-3357
-
-
Lau, E.Y.1
Newby, Z.E.2
Bruice, T.C.3
-
253
-
-
0032512591
-
Enantioselectivity of a recombinant epoxide hydrolase from Agrobacterium radiobacter
-
Lutje Spelberg, J.H., Rink, R., Kellogg, R.M., and Janssen, D.B. (1998). Enantioselectivity of a recombinant epoxide hydrolase from Agrobacterium radiobacter. Tetrahedron: Asymmetry, 9: 459-482.
-
(1998)
Tetrahedron: Asymmetry
, vol.9
, pp. 459-482
-
-
Lutje Spelberg, J.H.1
Rink, R.2
Kellogg, R.M.3
Janssen, D.B.4
-
254
-
-
0028812770
-
Phosphonate analogues of triacylglycerols are potent inhibitors of lipase
-
Mannesse, M.L.M., Boots, J-W.P., Dijkman, R., Slotboom, A.J., van der Hijden, H.T.W.M., Egmond, M.R., Verheij, H.M., and de Haas, G.H. (1995). Phosphonate analogues of triacylglycerols are potent inhibitors of lipase. Biochim. Biophys. Acta, 1259: 56-64.
-
(1995)
Biochim. Biophys. Acta
, vol.1259
, pp. 56-64
-
-
Mannesse, M.L.M.1
Boots, J-W.P.2
Dijkman, R.3
Slotboom, A.J.4
van der Hijden, H.T.W.M.5
Egmond, M.R.6
Verheij, H.M.7
de Haas, G.H.8
-
255
-
-
0942279303
-
Role of secondary level chiral structure in the process of molecular recognition of ligand: Study of model helical peptide
-
Nandi, N. (2004). Role of secondary level chiral structure in the process of molecular recognition of ligand: Study of model helical peptide. J. Phys. Chem. B., 108: 789-797.
-
(2004)
J. Phys. Chem. B.
, vol.108
, pp. 789-797
-
-
Nandi, N.1
-
256
-
-
70350173558
-
Chiral discrimination in the confined environment of biological nanospace: Reactions and interactions involving amino acids and peptides
-
Nandi, N. (2009). Chiral discrimination in the confined environment of biological nanospace: Reactions and interactions involving amino acids and peptides. Int. Rev. Phys. Chem., 28: 111-167.
-
(2009)
Int. Rev. Phys. Chem.
, vol.28
, pp. 111-167
-
-
Nandi, N.1
-
257
-
-
0033591361
-
The x-ray structure of epoxide hydrolase from Agrobacterium radiobacter AD1: An enzyme to detoxify harmful epoxides
-
Nardini, M., Ridder, I.S., Rozeboom, H.J., Kalk, K.H., Rink, R., Janssen, D.B., and Dijkstra, B.W. (1999). The x-ray structure of epoxide hydrolase from Agrobacterium radiobacter AD1: An enzyme to detoxify harmful epoxides. J. Biol. Chem., 274: 14579-14586.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 14579-14586
-
-
Nardini, M.1
Ridder, I.S.2
Rozeboom, H.J.3
Kalk, K.H.4
Rink, R.5
Janssen, D.B.6
Dijkstra, B.W.7
-
258
-
-
14644429730
-
Epoxide hydrolases: Their roles and interactions with lipid metabolism
-
Newman, J.W., Morisseau, C., and Hammock, B.D. (2005). Epoxide hydrolases: Their roles and interactions with lipid metabolism. Prog Lipid Res. 44: 1-51.
-
(2005)
Prog Lipid Res.
, vol.44
, pp. 1-51
-
-
Newman, J.W.1
Morisseau, C.2
Hammock, B.D.3
-
259
-
-
0032558964
-
Kinetic mechanism of the enantioselective conversion of styrene oxide by epoxide hydrolase from Agrobacterium radiobacter AD1
-
Rink, R. and Janssen, D.B. (1998). Kinetic mechanism of the enantioselective conversion of styrene oxide by epoxide hydrolase from Agrobacterium radiobacter AD1. Biochemistry, 37: 18119-18127.
-
(1998)
Biochemistry
, vol.37
, pp. 18119-18127
-
-
Rink, R.1
Janssen, D.B.2
-
260
-
-
1942517067
-
Reaction mechanism of soluble epoxide hydrolase: Insights from molecular dynamics simulations
-
Schiøtt, B. and Bruice, T.C. (2002). Reaction mechanism of soluble epoxide hydrolase: Insights from molecular dynamics simulations. J. Am. Chem. Soc., 124: 14558-14570.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 14558-14570
-
-
Schiøtt, B.1
Bruice, T.C.2
-
261
-
-
0029911205
-
The catalytic mechanism of microsomal epoxide hydrolase involves reversible formation and rate-limiting hydrolysis of the alkyl-enzyme intermediate
-
Tzeng, H.-F., Laughlin, L.T., Lin, S., and Armstrong, R.M. (1996). The catalytic mechanism of microsomal epoxide hydrolase involves reversible formation and rate-limiting hydrolysis of the alkyl-enzyme intermediate. J. Am. Chem. Soc., 118: 9436-9437.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 9436-9437
-
-
Tzeng, H.-F.1
Laughlin, L.T.2
Lin, S.3
Armstrong, R.M.4
-
262
-
-
0019501742
-
Stereochemistry in the oxidative metabolism of styrene by hepatic microsomes
-
Watabe, T., Ozawe, N., and Hiratsuka, A. (1981). Stereochemistry in the oxidative metabolism of styrene by hepatic microsomes. Biochem. Pharmacol., 30: 1695-1698.
-
(1981)
Biochem. Pharmacol.
, vol.30
, pp. 1695-1698
-
-
Watabe, T.1
Ozawe, N.2
Hiratsuka, A.3
-
263
-
-
0026694205
-
Enantio- and regioselectivity in the epoxide hydrolase catalyzed ring opening of simple aliphatic oxiranes: Part I: Monoalkyl substituted oxiranes
-
Wistuba, D. and Schurig, V. (1992). Enantio- and regioselectivity in the epoxide hydrolase catalyzed ring opening of simple aliphatic oxiranes: Part I: Monoalkyl substituted oxiranes. Chirality, 4: 178-184.
-
(1992)
Chirality
, vol.4
, pp. 178-184
-
-
Wistuba, D.1
Schurig, V.2
-
264
-
-
0026647474
-
Enantio- and regioselectivity in the epoxide hydrolase catalyzed ring opening of simple aliphatic oxiranes: Part II: Dialkyl and trialkylsubstituted oxiranes
-
Wistuba, D., Träger, O. and Schurig, V. (1992). Enantio- and regioselectivity in the epoxide hydrolase catalyzed ring opening of simple aliphatic oxiranes: Part II: Dialkyl and trialkylsubstituted oxiranes. Chirality, 4: 185-192.
-
(1992)
Chirality
, vol.4
, pp. 185-192
-
-
Wistuba, D.1
Träger, O.2
Schurig, V.3
-
265
-
-
33645739748
-
Oxidoreductases and hydroxynitrilase lyases: Complementary enzymatic technologies for chiral alcohols
-
Daußmann, T., Rosen, T.C., and Dünkelmann, P. (2006). Oxidoreductases and hydroxynitrilase lyases: Complementary enzymatic technologies for chiral alcohols. Eng. Life Sci., 6: 125-129.
-
(2006)
Eng. Life Sci.
, vol.6
, pp. 125-129
-
-
Daußmann, T.1
Rosen, T.C.2
Dünkelmann, P.3
-
266
-
-
33947124469
-
Structural determinants of the enantioselectivity of the hydroxynitrile lyase from Hevea brasiliensis
-
Gartler, G., Kratky, C., and Gruber, K. (2007). Structural determinants of the enantioselectivity of the hydroxynitrile lyase from Hevea brasiliensis. J. Biotechnol., 129: 87-97.
-
(2007)
J. Biotechnol.
, vol.129
, pp. 87-97
-
-
Gartler, G.1
Kratky, C.2
Gruber, K.3
-
267
-
-
0034213036
-
The synthesis of chiral cyanohydrins by oxynitrilases
-
Griengl, H., Schwab, H., and Fechter, M. (2000). The synthesis of chiral cyanohydrins by oxynitrilases. Trends Biotechnol., 18: 252-256.
-
(2000)
Trends Biotechnol.
, vol.18
, pp. 252-256
-
-
Griengl, H.1
Schwab, H.2
Fechter, M.3
-
268
-
-
0001516109
-
Enzyme-effected asymmetric syntheses
-
Rosenthaler, L. (1908). Enzyme-effected asymmetric syntheses. Biochem. Z., 14: 238-253.
-
(1908)
Biochem. Z.
, vol.14
, pp. 238-253
-
-
Rosenthaler, L.1
-
269
-
-
40649115280
-
Composite active site of chondroitin lyase ABC accepting both epimers of uronic acid
-
Shaya, D., Hahn, B.-S., Bjerkan, T.M., Kim, W.S., Park, N.Y., Sim, J.-S., Kim, Y.-S., and Cygler, M. (2008). Composite active site of chondroitin lyase ABC accepting both epimers of uronic acid. Glycobiology, 18: 270-277.
-
(2008)
Glycobiology
, vol.18
, pp. 270-277
-
-
Shaya, D.1
Hahn, B.-S.2
Bjerkan, T.M.3
Kim, W.S.4
Park, N.Y.5
Sim, J.-S.6
Kim, Y.-S.7
Cygler, M.8
-
270
-
-
0030586027
-
Mechanism of cyanogenesis: The crystal structure of hydroxynitrile lyase from Hevea brasiliensis
-
Wagner, U.G., Hasslacher, M., Griengl, H., Schwab, H., and Kratky, C. (1996). Mechanism of cyanogenesis: The crystal structure of hydroxynitrile lyase from Hevea brasiliensis. Structure, 4: 811-822.
-
(1996)
Structure
, vol.4
, pp. 811-822
-
-
Wagner, U.G.1
Hasslacher, M.2
Griengl, H.3
Schwab, H.4
Kratky, C.5
-
271
-
-
0029955020
-
Identification of potential active-site residues in the hydroxynitrile lyase from Manihot esculenta
-
Wajant, H. and Pfizenmaier, K. (1996). Identification of potential active-site residues in the hydroxynitrile lyase from Manihot esculenta. J. Biol. Chem., 271: 25830-25834.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 25830-25834
-
-
Wajant, H.1
Pfizenmaier, K.2
-
272
-
-
0030934790
-
Crystal structure analysis of the activation of histidine by Thermus thermophilus Histidyl-tRNA Synthetase
-
Åberg, A., Yaremchuk, A., Tukalo, M., Rasmussen, B., and Cusack, S. (1997). Crystal structure analysis of the activation of histidine by Thermus thermophilus Histidyl-tRNA Synthetase. Biochemistry, 36: 3084-3094.
-
(1997)
Biochemistry
, vol.36
, pp. 3084-3094
-
-
Åberg, A.1
Yaremchuk, A.2
Tukalo, M.3
Rasmussen, B.4
Cusack, S.5
-
273
-
-
0032488817
-
Specific amino acid recognition by aspartyl-tRNA synthetase studied by free energy simulations
-
Archontis, G., Simonson, T., Moras, D., and Karplus, M. (1998). Specific amino acid recognition by aspartyl-tRNA synthetase studied by free energy simulations. J. Mol. Biol., 275: 823-846.
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 823-846
-
-
Archontis, G.1
Simonson, T.2
Moras, D.3
Karplus, M.4
-
274
-
-
0033548581
-
Glycyl-tRNA synthetase uses a negatively charged pit for specific recognition and activation of glycine
-
Arnez, J.G., Dock-Bregeon, A., and Moras, D. (1999). Glycyl-tRNA synthetase uses a negatively charged pit for specific recognition and activation of glycine. J. Mol. Biol., 286: 1449-1459.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 1449-1459
-
-
Arnez, J.G.1
Dock-Bregeon, A.2
Moras, D.3
-
275
-
-
0030788568
-
The first step of aminoacylation at the atomic level in histidyl-tRNA synthetase
-
Arnez, J.G., Augstine, J.G., Moras, D., and Francklyn, C.S. (1997). The first step of aminoacylation at the atomic level in histidyl-tRNA synthetase. Proc. Natl. Acad. Sci. (USA), 94: 7144-7149.
-
(1997)
Proc. Natl. Acad. Sci. (USA)
, vol.94
, pp. 7144-7149
-
-
Arnez, J.G.1
Augstine, J.G.2
Moras, D.3
Francklyn, C.S.4
-
276
-
-
0029127816
-
Crystal structure of histidyl-tRNA synthetase from Escherichia coli complexed with histidyl-adenylate
-
Arnez, J.G., Harris, D.C., Mitschler, A., Rees, B., Francklyn, C.S., and Moras, D. (1995). Crystal structure of histidyl-tRNA synthetase from Escherichia coli complexed with histidyl-adenylate. EMBO J., 14: 4143-4155.
-
(1995)
EMBO J.
, vol.14
, pp. 4143-4155
-
-
Arnez, J.G.1
Harris, D.C.2
Mitschler, A.3
Rees, B.4
Francklyn, C.S.5
Moras, D.6
-
277
-
-
0000370391
-
The topology of multidimensional potential energy surfaces: Theory and application to peptide structure and kinetics
-
Becker, O.M. and Karplus, M. (1997). The topology of multidimensional potential energy surfaces: Theory and application to peptide structure and kinetics. J. Chem. Phys., 106: 1495-1517.
-
(1997)
J. Chem. Phys.
, vol.106
, pp. 1495-1517
-
-
Becker, O.M.1
Karplus, M.2
-
278
-
-
0029644481
-
The structural basis for seryladenylate and Ap4A synthesis by seryl-tRNA synthetase
-
Belrhali, H., Yaremchuk, A., Tukalo, M., Berthet-Colominas, C., Rasmussen, B., Bosecke, P., Diat, O., and Cusack, S. (1995). The structural basis for seryladenylate and Ap4A synthesis by seryl-tRNA synthetase. Structure, 3: 341-352.
-
(1995)
Structure
, vol.3
, pp. 341-352
-
-
Belrhali, H.1
Yaremchuk, A.2
Tukalo, M.3
Berthet-Colominas, C.4
Rasmussen, B.5
Bosecke, P.6
Diat, O.7
Cusack, S.8
-
279
-
-
0034332436
-
tRNA aminoacylation by arginyltRNA synthetase: Induced conformations during substrates binding
-
Benedicte, D., Moras, D., and Cavarelli, J. (2000). tRNA aminoacylation by arginyltRNA synthetase: Induced conformations during substrates binding. EMBO J., 19: 5599-5610.
-
(2000)
EMBO J.
, vol.19
, pp. 5599-5610
-
-
Benedicte, D.1
Moras, D.2
Cavarelli, J.3
-
280
-
-
0003717374
-
-
New York: W.H. Freeman, 671-672
-
Berg, J.M., Tymoczko, J.L., and Stryer, L. (2002). Biochemistry, New York: W.H. Freeman, 671-672.
-
(2002)
Biochemistry
-
-
Berg, J.M.1
Tymoczko, J.L.2
Stryer, L.3
-
281
-
-
0000026965
-
The enzymic synthesis of amino acyl derivatives of ribonucleic acid
-
Bergmann, F., Berg P., and Dieckmann, M. (1961). The enzymic synthesis of amino acyl derivatives of ribonucleic acid. J. Biol. Chem., 236: 1735-1740.
-
(1961)
J. Biol. Chem.
, vol.236
, pp. 1735-1740
-
-
Bergmann, F.1
Berg, P.2
Dieckmann, M.3
-
282
-
-
0028105601
-
The 2.9 Å crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNASer.
-
Biou, V., Yaremchuk, A., Tukalo, M., and Cusack, S. (1994). The 2.9 Å crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNASer. Science, 263: 1404-1410.
-
(1994)
Science
, vol.263
, pp. 1404-1410
-
-
Biou, V.1
Yaremchuk, A.2
Tukalo, M.3
Cusack, S.4
-
283
-
-
0014219470
-
D-tyrosyl RNA: Formation, hydrolysis and utilization for protein synthesis
-
Calendar, R. and Berg, P. (1967). D-tyrosyl RNA: Formation, hydrolysis and utilization for protein synthesis. J. Mol. Biol., 26: 39-54.
-
(1967)
J. Mol. Biol.
, vol.26
, pp. 39-54
-
-
Calendar, R.1
Berg, P.2
-
284
-
-
0013906161
-
The catalytic properties of tyrosyl ribonucleic acid synthetases from Escherichia coli and Bacillus subtilis
-
Calendar, R. and Berg, P. (1966). The catalytic properties of tyrosyl ribonucleic acid synthetases from Escherichia coli and Bacillus subtilis. Biochemistry, 5: 1690-1695.
-
(1966)
Biochemistry
, vol.5
, pp. 1690-1695
-
-
Calendar, R.1
Berg, P.2
-
285
-
-
0032530309
-
L-arginine recognition by yeast arginyl tRNA synthetase
-
Cavarelli, J., Delagoutte, B., Eriani, G., Gangloff, J., and Moras, D. (1998). L-arginine recognition by yeast arginyl tRNA synthetase. EMBO J., 17: 5438-5448.
-
(1998)
EMBO J.
, vol.17
, pp. 5438-5448
-
-
Cavarelli, J.1
Delagoutte, B.2
Eriani, G.3
Gangloff, J.4
Moras, D.5
-
286
-
-
0028084909
-
The active site of yeast aspartyl- tRNA synthetase: Structural and functional aspects of the aminoacylation reaction
-
Cavarelli, J., Eriani, G., Rees, B., Ruff, M., Boeglin, M., Mitschler, A., Martin, F., Gangloff, J., Thierry, J.C., and Moras, D. (1994). The active site of yeast aspartyl- tRNA synthetase: Structural and functional aspects of the aminoacylation reaction. EMBO J., 13: 327-337.
-
(1994)
EMBO J.
, vol.13
, pp. 327-337
-
-
Cavarelli, J.1
Eriani, G.2
Rees, B.3
Ruff, M.4
Boeglin, M.5
Mitschler, A.6
Martin, F.7
Gangloff, J.8
Thierry, J.C.9
Moras, D.10
-
287
-
-
0032525301
-
The crystal structure of asparaginyl-tRNA synthetase from Thermus thermophilus and its complexes with ATP and asparaginyl-adenylate: The mechanism of discrimination between asparagines and aspartic acid
-
Colominas, C., Seignovert, L., Härtlein, M., Grotli, M., Cusack, S., and Leberman, R. (1998). The crystal structure of asparaginyl-tRNA synthetase from Thermus thermophilus and its complexes with ATP and asparaginyl-adenylate: The mechanism of discrimination between asparagines and aspartic acid. EMBO J., 17: 2947-2960.
-
(1998)
EMBO J.
, vol.17
, pp. 2947-2960
-
-
Colominas, C.1
Seignovert, L.2
Härtlein, M.3
Grotli, M.4
Cusack, S.5
Leberman, R.6
-
288
-
-
0034657687
-
The 2Å crystal structure of leucyl-tRNA synthetase and its complex with a leucyl-adenylate analogue
-
Cusack, S., Yaremchuk, A., and Tukalo, M. (2000). The 2Å crystal structure of leucyl-tRNA synthetase and its complex with a leucyl-adenylate analogue. EMBO J., 19: 2351-2361.
-
(2000)
EMBO J.
, vol.19
, pp. 2351-2361
-
-
Cusack, S.1
Yaremchuk, A.2
Tukalo, M.3
-
289
-
-
0013314162
-
The isolation of a tryptophanactivating enzyme from pancreas
-
Davie, E., Konigsberger V., and Lipman, F. (1956). The isolation of a tryptophanactivating enzyme from pancreas. Arch. Biochem. Biophys., 65: 21-38.
-
(1956)
Arch. Biochem. Biophys.
, vol.65
, pp. 21-38
-
-
Davie, E.1
Konigsberger, V.2
Lipman, F.3
-
290
-
-
0034713835
-
Active site of lysyl-tRNA synthetase: Structural studies of the adenylation reaction
-
Desogus, G., Todone, F., Brick P., and Onesti, S. (2000). Active site of lysyl-tRNA synthetase: Structural studies of the adenylation reaction. Biochemistry, 39: 8418-8425.
-
(2000)
Biochemistry
, vol.39
, pp. 8418-8425
-
-
Desogus, G.1
Todone, F.2
Brick, P.3
Onesti, S.4
-
291
-
-
72749118568
-
Molecular understanding of the influence of chirality and interaction in soft systems: From biomimetics to biosystems, a retrospection
-
Dutta Banik, S. and Nandi, N. (2009a). Molecular understanding of the influence of chirality and interaction in soft systems: From biomimetics to biosystems, a retrospection. J. Surf. Sci. Technol., 25: 1-18.
-
(2009)
J. Surf. Sci. Technol.
, vol.25
, pp. 1-18
-
-
Dutta Banik, S.1
Nandi, N.2
-
292
-
-
70350202541
-
Orientation and distance dependent chiral discrimination in the first step of the aminoacylation reaction: Integrated molecular orbital and semi-empirical method (ONIOM) based calculation
-
Dutta Banik, S. and Nandi, N. (2009b). Orientation and distance dependent chiral discrimination in the first step of the aminoacylation reaction: Integrated molecular orbital and semi-empirical method (ONIOM) based calculation. Coll. Surf. B: Biointerfaces, 74: 468-476.
-
(2009)
Coll. Surf. B: Biointerfaces
, vol.74
, pp. 468-476
-
-
Dutta Banik, S.1
Nandi, N.2
-
293
-
-
77649169683
-
Aminoacylation reaction in the histidyltRNA synthetase: Fidelity mechanism of the activation step
-
Dutta Banik, S. and Nandi, N. (2010). Aminoacylation reaction in the histidyltRNA synthetase: Fidelity mechanism of the activation step. J. Phys. Chem. B., 114: 2301-2311.
-
(2010)
J. Phys. Chem. B.
, vol.114
, pp. 2301-2311
-
-
Dutta Banik, S.1
Nandi, N.2
-
294
-
-
79960191170
-
Influence of the conserved active sites residues of Histidyl tRNA synthetase on the mechanism of aminoacylation reaction
-
in press
-
Dutta Banik, S. and Nandi, N. (2011). Influence of the conserved active sites residues of Histidyl tRNA synthetase on the mechanism of aminoacylation reaction. Biophys. Chem. (in press).
-
(2011)
Biophys. Chem.
-
-
Dutta Banik, S.1
Nandi, N.2
-
295
-
-
0033571581
-
Synthesis of aspartyl-tRNAAsp in Escherichia coli: A snapshot of the second step
-
Eiler, S., Dock-Bregeon, A.C., Moulinier, L., Thierry, J.C., and Moras, D. (1999). Synthesis of aspartyl-tRNAAsp in Escherichia coli: A snapshot of the second step. EMBO J., 18: 6532-6541.
-
(1999)
EMBO J.
, vol.18
, pp. 6532-6541
-
-
Eiler, S.1
Dock-Bregeon, A.C.2
Moulinier, L.3
Thierry, J.C.4
Moras, D.5
-
297
-
-
0343016029
-
-
Kirkwood, T.B.L. Rosenberg, R.F. Galas, D.J. (eds), Chapman & Hall, New York
-
Fersht, A.R. (1986). Accuracy in Molecular Processes, Kirkwood, T.B.L. Rosenberg, R.F. Galas, D.J. (eds), Chapman & Hall, New York, 69-82.
-
(1986)
Accuracy in Molecular Processes
, pp. 69-82
-
-
Fersht, A.R.1
-
298
-
-
0023657031
-
Dissection of the structure and activity of the tyrosyl-tRNA synthetase by site-directed mutagenesis
-
Fersht, A.R. (1987). Dissection of the structure and activity of the tyrosyl-tRNA synthetase by site-directed mutagenesis. Biochemistry, 26: 8031-8037.
-
(1987)
Biochemistry
, vol.26
, pp. 8031-8037
-
-
Fersht, A.R.1
-
299
-
-
38649136232
-
Methods for kinetic and thermodynamic analysis of aminoacyl tRNA synthetases
-
Francklyn, C.S., First, E.A., Perona, J.J., and Hou, Y. (2008). Methods for kinetic and thermodynamic analysis of aminoacyl tRNA synthetases. Methods, 44: 100-118.
-
(2008)
Methods
, vol.44
, pp. 100-118
-
-
Francklyn, C.S.1
First, E.A.2
Perona, J.J.3
Hou, Y.4
-
300
-
-
0023868490
-
Reconstruction by site-directed mutagenesis of the transition state for the activation of tyrosine by the tyrosyl-tRNA synthetase: A mobile loop envelopes the transition state in an induced-fit mechanism
-
Fersht, A.R., Knill-Jones, J.W., Bedouelle H., and Winter, G. (1988). Reconstruction by site-directed mutagenesis of the transition state for the activation of tyrosine by the tyrosyl-tRNA synthetase: A mobile loop envelopes the transition state in an induced-fit mechanism. Biochemistry, 27: 1581-1587.
-
(1988)
Biochemistry
, vol.27
, pp. 1581-1587
-
-
Fersht, A.R.1
Knill-Jones, J.W.2
Bedouelle, H.3
Winter, G.4
-
302
-
-
0034703763
-
Structural basis for double-sieve discrimination of L-valine from L-isoleucine and L-threonine by the complex of tRNAVal and valyl-tRNA synthetase
-
Fukai, S., Nureki, O., Sekine, S., Atsushi Shimada, Tao, J., Vassylyev, D.G., and Yokoyama, S. (2000). Structural basis for double-sieve discrimination of L-valine from L-isoleucine and L-threonine by the complex of tRNAVal and valyl-tRNA synthetase. Cell, 103: 793-803.
-
(2000)
Cell
, vol.103
, pp. 793-803
-
-
Fukai, S.1
Nureki, O.2
Sekine, S.3
Atsushi Shimada Tao, J.4
Vassylyev, D.G.5
Yokoyama, S.6
-
303
-
-
0008178378
-
Probing the synthetic capabilities of a center of biochemical catalysis
-
Hecht, S. (1992). Probing the synthetic capabilities of a center of biochemical catalysis. Acc. Chem. Res., 25: 545-552.
-
(1992)
Acc. Chem. Res.
, vol.25
, pp. 545-552
-
-
Hecht, S.1
-
304
-
-
0000359208
-
Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity
-
Hopfield, J.J. (1974). Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc. Natl. Acad. Sci. (USA), 71: 4135-4139.
-
(1974)
Proc. Natl. Acad. Sci. (USA)
, vol.71
, pp. 4135-4139
-
-
Hopfield, J.J.1
-
305
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996). VMD: Visual molecular dynamics. J. Mol. Graphics, 114: 33-38.
-
(1996)
J. Mol. Graphics
, vol.114
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
306
-
-
0033782994
-
Aminoacyl-tRNA synthesis
-
Ibba, M. and Söll, D. (2000). Aminoacyl-tRNA synthesis. Annu. Rev. Biochem., 69: 617-650.
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 617-650
-
-
Ibba, M.1
Söll, D.2
-
308
-
-
0010835929
-
Nonexistence of dianionic pentacovalent intermediates in an ab initio study of the base-catalyzed hydrolysis of ethylene phosphate
-
Lim, C. and Karplus, M. (1990). Nonexistence of dianionic pentacovalent intermediates in an ab initio study of the base-catalyzed hydrolysis of ethylene phosphate. J. Am. Chem. Soc., 112: 5872-5873.
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 5872-5873
-
-
Lim, C.1
Karplus, M.2
-
309
-
-
0035861676
-
Structural basis for the recognition of isoleucyl-adenylate and an antibiotic, mupirocin, by isoleucyl-tRNA synthetase
-
Nakama, T., Nureki, O., and Yokoyama, S. (2001). Structural basis for the recognition of isoleucyl-adenylate and an antibiotic, mupirocin, by isoleucyl-tRNA synthetase. J Biol. Chem., 276: 47387-47393.
-
(2001)
J Biol. Chem.
, vol.276
, pp. 47387-47393
-
-
Nakama, T.1
Nureki, O.2
Yokoyama, S.3
-
310
-
-
27744575743
-
Study of chiral recognition of model peptides and odorants: Carvone and camphor
-
Nandi N. (2005). Study of chiral recognition of model peptides and odorants: Carvone and camphor. Curr. Sci., 88: 1929-1937.
-
(2005)
Curr. Sci.
, vol.88
, pp. 1929-1937
-
-
Nandi, N.1
-
311
-
-
0038339629
-
Molecular origin of the recognition of chiral odorant by chiral lipid: Interaction of dipalmitoyl phosphatidyl choline and carvone
-
Nandi, N. (2003). Molecular origin of the recognition of chiral odorant by chiral lipid: Interaction of dipalmitoyl phosphatidyl choline and carvone. J. Phys. Chem. A., 107: 4588-4591.
-
(2003)
J. Phys. Chem. A.
, vol.107
, pp. 4588-4591
-
-
Nandi, N.1
-
312
-
-
70350173558
-
Chiral discrimination in the confined environment of biological nanospace: Reactions and interactions involving amino acids and peptides
-
Nandi, N. (2009). Chiral discrimination in the confined environment of biological nanospace: Reactions and interactions involving amino acids and peptides. Int. Rev. Phys. Chem., 28: 111-167.
-
(2009)
Int. Rev. Phys. Chem.
, vol.28
, pp. 111-167
-
-
Nandi, N.1
-
313
-
-
0037013921
-
Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase
-
Newberry, K.J., Hou, Y.-M., and Perona, J.J. (2002). Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase. EMBO J., 21: 2778-2787.
-
(2002)
EMBO J.
, vol.21
, pp. 2778-2787
-
-
Newberry, K.J.1
Hou, Y.-M.2
Perona, J.J.3
-
314
-
-
0038946088
-
Purification and properties of the aspartyl ribonucleic acid synthetase of Lactobacillus arabinosus
-
Norton, S., Ravel, J., Lee C., and Shive, W. (1963). Purification and properties of the aspartyl ribonucleic acid synthetase of Lactobacillus arabinosus. J. Biol. Chem., 238: 269-274.
-
(1963)
J. Biol. Chem.
, vol.238
, pp. 269-274
-
-
Norton, S.1
Ravel, J.2
Lee, C.3
Shive, W.4
-
315
-
-
0034710994
-
Structural studies of lysyl-tRNA synthetase: Conformational changes induced by substrate binding
-
Onesti, S., Desogus, G., Brevet, A., Chen, J., Plateau, P., Blanquet, S., and P. Brick, (2000). Structural studies of lysyl-tRNA synthetase: Conformational changes induced by substrate binding. Biochemistry, 39: 12853-12861.
-
(2000)
Biochemistry
, vol.39
, pp. 12853-12861
-
-
Onesti, S.1
Desogus, G.2
Brevet, A.3
Chen, J.4
Plateau, P.5
Blanquet, S.6
Brick, P.7
-
316
-
-
0027165755
-
Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase
-
Perona, J.J., Rould, M.A., and Steitz, T.A. (1993). Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase. Biochemistry, 32: 8758-8771.
-
(1993)
Biochemistry
, vol.32
, pp. 8758-8771
-
-
Perona, J.J.1
Rould, M.A.2
Steitz, T.A.3
-
317
-
-
0021119937
-
Stereoselective aminoacylation of a dinucleoside monophosphate by the imidazolides of DL-alanine and N-(tertbutoxycarbonyl)- DL-alanine
-
Profy, A.T. and Usher, D.A. (1984). Stereoselective aminoacylation of a dinucleoside monophosphate by the imidazolides of DL-alanine and N-(tertbutoxycarbonyl)- DL-alanine. J. Mol. Evol., 20: 147-156.
-
(1984)
J. Mol. Evol.
, vol.20
, pp. 147-156
-
-
Profy, A.T.1
Usher, D.A.2
-
318
-
-
7944232372
-
Enantiospecific (+)- and (-)-germacrene D synthases, cloned from goldenrod, reveal a functionally active variant of the universal isoprenoid- biosynthesis aspartate-rich motif
-
Prosser, I., Altug, I.G., Phillips, A.L., König, W.A., Bouwmeester, H.J., and Beale, M.H. (2004). Enantiospecific (+)- and (-)-germacrene D synthases, cloned from goldenrod, reveal a functionally active variant of the universal isoprenoid- biosynthesis aspartate-rich motif. Archives Biochem. Biophys., 432: 136-144.
-
(2004)
Archives Biochem. Biophys.
, vol.432
, pp. 136-144
-
-
Prosser, I.1
Altug, I.G.2
Phillips, A.L.3
König, W.A.4
Bouwmeester, H.J.5
Beale, M.H.6
-
319
-
-
0033592311
-
Cooperative structural dynamics and a novel fidelity mechanism in histidyl-tRNA synthetases
-
Qiu, X., Janson, C.A., Blackburn, M.N., Chhohan, I.K., Hibbs, M., and Abdel-Meguid, S.S. (1999). Cooperative structural dynamics and a novel fidelity mechanism in histidyl-tRNA synthetases. Biochemistry, 38: 12296-12304.
-
(1999)
Biochemistry
, vol.38
, pp. 12296-12304
-
-
Qiu, X.1
Janson, C.A.2
Blackburn, M.N.3
Chhohan, I.K.4
Hibbs, M.5
Abdel-Meguid, S.S.6
-
320
-
-
0032522422
-
How glutaminyl- tRNA synthetase selects glutamine
-
Rath, V.L., Silvian, L.F., Beijer, B., Sproat, B.S., and Steitz, T.A. (1998). How glutaminyl- tRNA synthetase selects glutamine. Structure, 6: 439-449.
-
(1998)
Structure
, vol.6
, pp. 439-449
-
-
Rath, V.L.1
Silvian, L.F.2
Beijer, B.3
Sproat, B.S.4
Steitz, T.A.5
-
321
-
-
0035226156
-
The fidelity of the translation of the genetic code
-
Sankaranarayanan R. and Moras, D. (2001). The fidelity of the translation of the genetic code. Acta Biochim. Polonica, 48: 323-335.
-
(2001)
Acta Biochim. Polonica
, vol.48
, pp. 323-335
-
-
Sankaranarayanan, R.1
Moras, D.2
-
322
-
-
0037415750
-
ATP binding by glutaminyl-tRNA synthetase is switched to the productive mode by tRNA binding
-
Sekine, S., Nureki, O., Dubois, D.Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D.G., and Yokoyama, S. (2003). ATP binding by glutaminyl-tRNA synthetase is switched to the productive mode by tRNA binding. EMBO J., 22: 676-688.
-
(2003)
EMBO J.
, vol.22
, pp. 676-688
-
-
Sekine, S.1
Nureki, O.2
Dubois, D.Y.3
Bernier, S.4
Chenevert, R.5
Lapointe, J.6
Vassylyev, D.G.7
Yokoyama, S.8
-
323
-
-
0034693045
-
Metabolism of D-aminoacyltRNAs in Escherichia coli and Saccharomyces cerevisiae cells
-
Soutourina, J., Plateau P., and Blanquet, S. (2000). Metabolism of D-aminoacyltRNAs in Escherichia coli and Saccharomyces cerevisiae cells. J. Biol. Chem., 275: 32535-32542.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 32535-32542
-
-
Soutourina, J.1
Plateau, P.2
Blanquet, S.3
-
324
-
-
0036123173
-
Receptor neuron discrimination of the germacrene D enantiomers in the moth Helicoverpa armigera
-
Stranden, M., Borg-Karlson, A.K., and Mustaparta, H. (2004). Receptor neuron discrimination of the germacrene D enantiomers in the moth Helicoverpa armigera. Chem. Senses., 27: 143-152.
-
(2004)
Chem. Senses.
, vol.27
, pp. 143-152
-
-
Stranden, M.1
Borg-Karlson, A.K.2
Mustaparta, H.3
-
325
-
-
4344578505
-
Chiral-selective aminoacylation of an RNA minihelix
-
Tamura, K. and Schimmel, P. (2004). Chiral-selective aminoacylation of an RNA minihelix. Science, 305: 1253.
-
(2004)
Science
, vol.305
, pp. 1253
-
-
Tamura, K.1
Schimmel, P.2
-
326
-
-
33748766632
-
Chiral-selective aminoacylation of an RNA minihelix: Mechanistic features and chiral suppression
-
Tamura, K. and Schimmel, P. (2006). Chiral-selective aminoacylation of an RNA minihelix: Mechanistic features and chiral suppression. Proc. Natl. Acad. Sci. (USA), 103: 13750-13752.
-
(2006)
Proc. Natl. Acad. Sci. (USA)
, vol.103
, pp. 13750-13752
-
-
Tamura, K.1
Schimmel, P.2
-
327
-
-
35648937527
-
Ammonium scanning in an enzyme active site the chiral specificity of aspartyl-tRNA synthetase
-
Thompson, D., Lazennec, C., Plateau P., and Simonson, T. (2007). Ammonium scanning in an enzyme active site the chiral specificity of aspartyl-tRNA synthetase. J. Biol. Chem., 282: 30856-30868.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 30856-30868
-
-
Thompson, D.1
Lazennec, C.2
Plateau, P.3
Simonson, T.4
-
328
-
-
0035815113
-
Evolution of function in protein superfamilies from a structural perspective
-
Todd, A.E., Orengo, C.A., and Thornton, J.M. (2001). Evolution of function in protein superfamilies from a structural perspective. J. Mol. Biol., 307: 1113-1143.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1113-1143
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
329
-
-
0032552138
-
Archetypal energy landscapes
-
Wales, D.J., Miller, M.A., and Walsh, T.R. (1998). Archetypal energy landscapes. Nature, 394: 758-760.
-
(1998)
Nature
, vol.394
, pp. 758-760
-
-
Wales, D.J.1
Miller, M.A.2
Walsh, T.R.3
-
330
-
-
33748633480
-
Electrostatic basis for enzyme catalysis
-
Warshel, A., Sharma, P.K., Kato, M., Xiang, Y., Liu, H., and Olsson, M.H.M. (2006). Electrostatic basis for enzyme catalysis. Chem. Rev., 106: 3210-3235.
-
(2006)
Chem. Rev.
, vol.106
, pp. 3210-3235
-
-
Warshel, A.1
Sharma, P.K.2
Kato, M.3
Xiang, Y.4
Liu, H.5
Olsson, M.H.M.6
-
331
-
-
0034692903
-
Stabilization of the transition state for the transfer of tyrosine to tRNATyr by tyrosyl-tRNA synthetase
-
Xin, Y., Li, W., and First, E.A. (2000). Stabilization of the transition state for the transfer of tyrosine to tRNATyr by tyrosyl-tRNA synthetase. J. Mol. Biol., 303: 299-310.
-
(2000)
J. Mol. Biol.
, vol.303
, pp. 299-310
-
-
Xin, Y.1
Li, W.2
First, E.A.3
-
332
-
-
0017394853
-
Experimental evidence for kinetic proofreading in the aminoacylation of tRNA by synthetase
-
Yamane, T. and Hopfield, J.J. (1977). Experimental evidence for kinetic proofreading in the aminoacylation of tRNA by synthetase. Proc. Natl. Acad. Sci. (USA), 74: 2246-2250.
-
(1977)
Proc. Natl. Acad. Sci. (USA)
, vol.74
, pp. 2246-2250
-
-
Yamane, T.1
Hopfield, J.J.2
-
333
-
-
0000359208
-
Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity
-
Yamane, T., Miller, L., and Hopfield, J.J. (1974). Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc. Natl. Acad. Sci. (USA), 71: 4135-4139.
-
(1974)
Proc. Natl. Acad. Sci. (USA)
, vol.71
, pp. 4135-4139
-
-
Yamane, T.1
Miller, L.2
Hopfield, J.J.3
-
334
-
-
0038867278
-
(-)-Germacrene D: Masking substance of attractants for the cerambycid beetle, Monochamus alternatus (Hope)
-
Yamasaki, T., Sato, M., and Sakoguchi, H. (1997). (-)-Germacrene D: Masking substance of attractants for the cerambycid beetle, Monochamus alternatus (Hope). Appl. Entomol. Zool., 32: 423-429.
-
(1997)
Appl. Entomol. Zool.
, vol.32
, pp. 423-429
-
-
Yamasaki, T.1
Sato, M.2
Sakoguchi, H.3
-
335
-
-
0037099498
-
Class I tyrosyltRNA synthetase has a class II mode of cognate tRNA recognition
-
Yaremchuk, A., Kriklivyi, I., Tukalo, M., and Cusack, S. (2002). Class I tyrosyltRNA synthetase has a class II mode of cognate tRNA recognition. EMBO J., 21: 3829-3840.
-
(2002)
EMBO J.
, vol.21
, pp. 3829-3840
-
-
Yaremchuk, A.1
Kriklivyi, I.2
Tukalo, M.3
Cusack, S.4
-
336
-
-
0035875882
-
A succession of substrate induced conformational changes ensures the amino acid specificity of Thermus thermophilus prolyl-tRNA synthetase: Comparison with histidyltRNA synthetase
-
Yaremchuk, A., Tukalo, M., Grotli, M., and Cusack, S. (2001). A succession of substrate induced conformational changes ensures the amino acid specificity of Thermus thermophilus prolyl-tRNA synthetase: Comparison with histidyltRNA synthetase. J. Mol. Biol., 309: 989-1002.
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 989-1002
-
-
Yaremchuk, A.1
Tukalo, M.2
Grotli, M.3
Cusack, S.4
-
338
-
-
0001490606
-
Molecular recognition at air-water and related interfaces: Complementary hydrogen bonding and multisite interaction
-
Ariga, K. and Kunitake, T. (1998). Molecular recognition at air-water and related interfaces: Complementary hydrogen bonding and multisite interaction. Acc. Chem. Res., 31: 371-378.
-
(1998)
Acc. Chem. Res.
, vol.31
, pp. 371-378
-
-
Ariga, K.1
Kunitake, T.2
-
339
-
-
49149109959
-
-
Ariga, K., Hill, J.P., Lee, M.V., Vinu, A., Charvet, R., and Acharya, S. (2009). Sci. Technol. Adv. Mater. 9: 014109.
-
(2009)
Sci. Technol. Adv. Mater.
, vol.9
, pp. 014109
-
-
Ariga, K.1
Hill, J.P.2
Lee, M.V.3
Vinu, A.4
Charvet, R.5
Acharya, S.6
-
340
-
-
37249051761
-
Chiral recognition at the air-water interface
-
Ariga, K., Michinobu, T., Nakanishi, T., and Hill, J.P. (2008). Chiral recognition at the air-water interface. Curr. Opin. Colloid Interface Sci., 13: 23-30.
-
(2008)
Curr. Opin. Colloid Interface Sci.
, vol.13
, pp. 23-30
-
-
Ariga, K.1
Michinobu, T.2
Nakanishi, T.3
Hill, J.P.4
-
341
-
-
33744754038
-
A paradigm shift in the field of molecular recognition at the air-water interface: From static to dynamic
-
Ariga, K., Nakanishi, T., and Hill, J.P. (2006). A paradigm shift in the field of molecular recognition at the air-water interface: From static to dynamic. Soft Matter, 2: 465-498.
-
(2006)
Soft Matter
, vol.2
, pp. 465-498
-
-
Ariga, K.1
Nakanishi, T.2
Hill, J.P.3
-
342
-
-
0030951462
-
Design of an active fragment of a class II aminoacyl tRNA synthetase and its significance for synthetase evolution
-
Augustine, J. and Francklyn, C. (1997). Design of an active fragment of a class II aminoacyl tRNA synthetase and its significance for synthetase evolution. Biochemistry, 36: 3473-3482.
-
(1997)
Biochemistry
, vol.36
, pp. 3473-3482
-
-
Augustine, J.1
Francklyn, C.2
-
343
-
-
0031029551
-
Protein design: The choice of de novo sequences
-
Beasley, J.R. and Hecht, M.H. (1997). Protein design: The choice of de novo sequences. J. Biol. Chem., 272: 2031-2034.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 2031-2034
-
-
Beasley, J.R.1
Hecht, M.H.2
-
344
-
-
0027668216
-
Catalysis: Design versus selection
-
Benner, S. (1993). Catalysis: Design versus selection. Science, 261: 1402-1403.
-
(1993)
Science
, vol.261
, pp. 1402-1403
-
-
Benner, S.1
-
345
-
-
0034612312
-
Rational design of nascent metalloenzymes
-
Benson, D.E., Wisz, M.S., and Hellinga, H.W. (2000). Rational design of nascent metalloenzymes. Proc. Natl. Acad. Sci. (USA), 97: 6292-6297.
-
(2000)
Proc. Natl. Acad. Sci. (USA)
, vol.97
, pp. 6292-6297
-
-
Benson, D.E.1
Wisz, M.S.2
Hellinga, H.W.3
-
346
-
-
0037523450
-
The discovery of catalytically active peptides through combinatorial chemistry
-
Berkessel, A. (2003). The discovery of catalytically active peptides through combinatorial chemistry. Curr. Opin. Chem. Biol., 7: 409-419.
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 409-419
-
-
Berkessel, A.1
-
347
-
-
65349124747
-
Opportunities for enzyme engineering in natural product biosynthesis
-
Bernhardt, P. and O'Connor, S.E. (2009). Opportunities for enzyme engineering in natural product biosynthesis. Curr. Opin. Chem. Biol., 13: 35-42.
-
(2009)
Curr. Opin. Chem. Biol.
, vol.13
, pp. 35-42
-
-
Bernhardt, P.1
O'Connor, S.E.2
-
348
-
-
7444241366
-
De novo design of defined helical bundles in membrane environments
-
Bilgicer, B. and Kumar, K. (2004). De novo design of defined helical bundles in membrane environments. Proc. Natl. Acad. Sci. (USA), 101: 15324-15329.
-
(2004)
Proc. Natl. Acad. Sci. (USA)
, vol.101
, pp. 15324-15329
-
-
Bilgicer, B.1
Kumar, K.2
-
349
-
-
18844393705
-
An intein-based genetic selection allows the construction of a high-quality library of binary patterned de novo protein sequences
-
Bradley, L.H., Kleiner, R.E., Wang, A.F., Hecht, M.H., and Wood, D.W. (2005). An intein-based genetic selection allows the construction of a high-quality library of binary patterned de novo protein sequences. Protein Eng. Des. Sel., 18: 201-207.
-
(2005)
Protein Eng. Des. Sel.
, vol.18
, pp. 201-207
-
-
Bradley, L.H.1
Kleiner, R.E.2
Wang, A.F.3
Hecht, M.H.4
Wood, D.W.5
-
350
-
-
0035787715
-
Atomic structures of the 30S subunit and its complexes with ligands and antibiotics
-
Brodersen, D.E., Carter, A.P., Clemons, W.M., Jr., Morgan-Warren, R.J., Murphy F.V. IV, Ogle, J.M., Tarry, M.J., Wimberly, B.T., and Ramakrishnan, V. (2001). Atomic structures of the 30S subunit and its complexes with ligands and antibiotics. Cold Spring Harbor Symp. Quant. Biol., 66: 17-32.
-
(2001)
Cold Spring Harbor Symp. Quant. Biol.
, vol.66
, pp. 17-32
-
-
Brodersen, D.E.1
Carter, A.P.2
Clemons, W.M.3
Morgan-Warren, R.J.4
Murphy, F.V.5
Ogle, J.M.6
Tarry, M.J.7
Wimberly, B.T.8
Ramakrishnan, V.9
-
351
-
-
0034704217
-
The structural basis for the action of the antibiotics tetracycline, pactamycin and hygromycin B on the 30S ribosomal subunit
-
Brodersen, D.E., Clemons, W.M., Jr., Carter, A.P., Morgan-Warren, R.J., Wimberly, B.T., and Ramakrishnan, V. (2000). The structural basis for the action of the antibiotics tetracycline, pactamycin and hygromycin B on the 30S ribosomal subunit. Cell, 103: 1143-1154.
-
(2000)
Cell
, vol.103
, pp. 1143-1154
-
-
Brodersen, D.E.1
Clemons, W.M.2
Carter, A.P.3
Morgan-Warren, R.J.4
Wimberly, B.T.5
Ramakrishnan, V.6
-
352
-
-
0141480046
-
Coarse-grained sequences for protein folding and design
-
Brown, S., Fawzi, N.J., and Head-Gordon, T. (2003). Coarse-grained sequences for protein folding and design. Proc. Natl. Acad. Sci. (USA), 100: 10712-10717.
-
(2003)
Proc. Natl. Acad. Sci. (USA)
, vol.100
, pp. 10712-10717
-
-
Brown, S.1
Fawzi, N.J.2
Head-Gordon, T.3
-
353
-
-
0028824042
-
Protein design: A hierarchic approach
-
Bryson, J.W., Betz, S.F., Lu, H.S., Suich, D.J., Zhou, H.X., O'Neil, K.T., and DeGrado, W.F. (1995). Protein design: A hierarchic approach. Science, 270: 935-941.
-
(1995)
Science
, vol.270
, pp. 935-941
-
-
Bryson, J.W.1
Betz, S.F.2
Lu, H.S.3
Suich, D.J.4
Zhou, H.X.5
O'Neil, K.T.6
DeGrado, W.F.7
-
354
-
-
0034699519
-
Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
-
Carter, A.P., Clemons, W.M., Jr., Brodersen, D.E., Morgan-Warren, R.J., Wimberly, B.T., and Ramakrishnan, V. (2000). Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature, 407: 340-348.
-
(2000)
Nature
, vol.407
, pp. 340-348
-
-
Carter, A.P.1
Clemons, W.M.2
Brodersen, D.E.3
Morgan-Warren, R.J.4
Wimberly, B.T.5
Ramakrishnan, V.6
-
355
-
-
0041816188
-
An artificially designed poreforming protein with anti-tumor effects
-
Ellerby, H.M., Lee, S., Ellerby, L.M., Chen, S., Kiyota, T., del Rio, G., Sugihara, G., Sun, Y., Bredesen, D.E., and Arap, W. (2003). An artificially designed poreforming protein with anti-tumor effects. J. Biol. Chem., 278: 35311-35316.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 35311-35316
-
-
Ellerby, H.M.1
Lee, S.2
Ellerby, L.M.3
Chen, S.4
Kiyota, T.5
del Rio, G.6
Sugihara, G.7
Sun, Y.8
Bredesen, D.E.9
Arap, W.10
-
356
-
-
0037143609
-
Designability of alpha-helical proteins
-
Emberly, E.G., Wingreen, N.S., and Tang, C. (2002). Designability of alpha-helical proteins. Proc. Natl. Acad. Sci. (USA), 99: 11163-11168.
-
(2002)
Proc. Natl. Acad. Sci. (USA)
, vol.99
, pp. 11163-11168
-
-
Emberly, E.G.1
Wingreen, N.S.2
Tang, C.3
-
357
-
-
0023868490
-
Reconstruction by site-directed mutagenesis of the formation state for the activation of tyrosine by the tyrosyl-tRNA synthetase: A mobile loop envelopes the transition state in an induced fit mechanism
-
Fersht, A.R., Knill-Jones, J.W., Bedonelle, H., Winter, G. (1988). Reconstruction by site-directed mutagenesis of the formation state for the activation of tyrosine by the tyrosyl-tRNA synthetase: A mobile loop envelopes the transition state in an induced fit mechanism. Biochemstry, 27: 1581-1587.
-
(1988)
Biochemstry
, vol.27
, pp. 1581-1587
-
-
Fersht, A.R.1
Knill-Jones, J.W.2
Bedonelle, H.3
Winter, G.4
-
358
-
-
0025335121
-
Design and synthesis of a peptide having chymotrypsin-like esterase activity
-
Hahn, K.W., Klis, W.A., and Stewart, J.M. (1990). Design and synthesis of a peptide having chymotrypsin-like esterase activity. Science, 248: 1544-1547.
-
(1990)
Science
, vol.248
, pp. 1544-1547
-
-
Hahn, K.W.1
Klis, W.A.2
Stewart, J.M.3
-
359
-
-
0027177971
-
Metal ion-dependent modulation of the dynamics of a designed protein
-
Handel, T., Williams, S., and DeGrado, W. (1993). Metal ion-dependent modulation of the dynamics of a designed protein. Science, 261: 879-885.
-
(1993)
Science
, vol.261
, pp. 879-885
-
-
Handel, T.1
Williams, S.2
DeGrado, W.3
-
360
-
-
0030886443
-
Rational protein design: Combining theory and experiment
-
Hellinga, H.W. (1997). Rational protein design: Combining theory and experiment. Proc. Natl. Acad. Sci. (USA), 94: 10015-10017.
-
(1997)
Proc. Natl. Acad. Sci. (USA)
, vol.94
, pp. 10015-10017
-
-
Hellinga, H.W.1
-
361
-
-
1542364374
-
Metallothioneins: Zinc, cadmium, mercury, and copper thiolates and selenolates mimicking protein active site features- structural aspects and biological implications
-
Henkel, G. and Krebs, B. (2004). Metallothioneins: Zinc, cadmium, mercury, and copper thiolates and selenolates mimicking protein active site features- structural aspects and biological implications. Chem. Rev., 104: 801-824.
-
(2004)
Chem. Rev.
, vol.104
, pp. 801-824
-
-
Henkel, G.1
Krebs, B.2
-
362
-
-
20444495201
-
Drugs targeting the ribosome
-
Hermann, T. (2005). Drugs targeting the ribosome. Curr. Opin. Struct. Biol., 15: 355-366.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 355-366
-
-
Hermann, T.1
-
363
-
-
33646466620
-
Common attributes of native-state structures of proteins, disordered proteins, and amyloid
-
Hoang, T.X., Marsella, L., Trovato, A., Seno, F. ,Banavar, J.R., and Maritan, A. (2006). Common attributes of native-state structures of proteins, disordered proteins, and amyloid. Proc. Natl. Acad. Sci. (USA), 103: 6883-6888.
-
(2006)
Proc. Natl. Acad. Sci. (USA)
, vol.103
, pp. 6883-6888
-
-
Hoang, T.X.1
Marsella, L.2
Trovato, A.3
Seno, F.4
Banavar, J.R.5
Maritan, A.6
-
364
-
-
0038814072
-
Mutations in distant residues moderately increase the enantioselectivity of Pseudomonas fluorescens esterase towards methyl 3-bromo-2-methylpropanoate and ethyl 3-phenylbutyrate
-
Horsman, G.P., Liu, A.M.F., Henke, E., Bornscheuer, U.T., and Kazlauskas, R.J. (2003). Mutations in distant residues moderately increase the enantioselectivity of Pseudomonas fluorescens esterase towards methyl 3-bromo-2-methylpropanoate and ethyl 3-phenylbutyrate. Chem. Eur. J., 9: 1933-1939.
-
(2003)
Chem. Eur. J.
, vol.9
, pp. 1933-1939
-
-
Horsman, G.P.1
Liu, A.M.F.2
Henke, E.3
Bornscheuer, U.T.4
Kazlauskas, R.J.5
-
365
-
-
84981601588
-
Quantum crystallography and the use of kernel projector matrices
-
Huang, L., Massa, L., and Karle, J. (1995). Quantum crystallography and the use of kernel projector matrices. Int. J. Quantum Chem.: Quantum Chem. Symp., 29: 371-384.
-
(1995)
Int. J. Quantum Chem.: Quantum Chem. Symp.
, vol.29
, pp. 371-384
-
-
Huang, L.1
Massa, L.2
Karle, J.3
-
366
-
-
3743079818
-
Kernel projector matrices for Leu1- zervamicin
-
Huang, L., Massa, L., and Karle, J. (1996). Kernel projector matrices for Leu1- zervamicin. Int. J. Quantum Chem.: Quantum Chem. Symp. 30, 1691-1700.
-
(1996)
Int. J. Quantum Chem.: Quantum Chem. Symp.
, vol.30
, pp. 1691-1700
-
-
Huang, L.1
Massa, L.2
Karle, J.3
-
367
-
-
0004425540
-
Quantum crystallography applied to crystalline maleic anhydride
-
Huang, L., Massa, L., and Karle, J. (1999). Quantum crystallography applied to crystalline maleic anhydride. Int. J. Quantum Chem., 73: 439-450.
-
(1999)
Int. J. Quantum Chem.
, vol.73
, pp. 439-450
-
-
Huang, L.1
Massa, L.2
Karle, J.3
-
368
-
-
0035327181
-
Quantum crystallography, a developing area of computational chemistry extending to macromolecules
-
Huang, L., Massa, L., and Karle, J. (2001). Quantum crystallography, a developing area of computational chemistry extending to macromolecules. J. Res.Dev., 45: 409-415.
-
(2001)
J. Res.Dev.
, vol.45
, pp. 409-415
-
-
Huang, L.1
Massa, L.2
Karle, J.3
-
369
-
-
24644518254
-
Kernel energy method illustrated with peptides
-
Huang, L., Massa, L., and Karle, J. (2005). Kernel energy method illustrated with peptides. Int. J. Quantum Chem., 103: 808-817.
-
(2005)
Int. J. Quantum Chem.
, vol.103
, pp. 808-817
-
-
Huang, L.1
Massa, L.2
Karle, J.3
-
370
-
-
31944451277
-
Kernel energy method: Basis functions and quantum methods
-
Huang, L., Massa, L., and Karle, J. (2006a). Kernel energy method: Basis functions and quantum methods. Int. J. Quantum Chem., 106: 447-457.
-
(2006)
Int. J. Quantum Chem.
, vol.106
, pp. 447-457
-
-
Huang, L.1
Massa, L.2
Karle, J.3
-
371
-
-
31944449774
-
The kernel energy method: Application to a tRNA
-
Huang, L., Massa, L., and Karle, J. (2006b). The kernel energy method: Application to a tRNA. Proc. Natl. Acad. Sci. (USA), 103: 1233-1237.
-
(2006)
Proc. Natl. Acad. Sci. (USA)
, vol.103
, pp. 1233-1237
-
-
Huang, L.1
Massa, L.2
Karle, J.3
-
372
-
-
34248353534
-
Drug target interaction energies by the kernel energy method in aminoglycoside drugs and ribosomal A site RNA targets
-
Huang, L., Massa, L., and Karle, J. (2007). Drug target interaction energies by the kernel energy method in aminoglycoside drugs and ribosomal A site RNA targets. Proc. Natl. Acad. Sci. (USA), 104: 4261-4266.
-
(2007)
Proc. Natl. Acad. Sci. (USA)
, vol.104
, pp. 4261-4266
-
-
Huang, L.1
Massa, L.2
Karle, J.3
-
373
-
-
3242706731
-
Combined spectroscopic/computational studies on Fe and Mn dependent superoxide dismutases: Insights into second- sphere tuning of active site properties
-
Jackson, T.A. and Brunold, T.C. (2004). Combined spectroscopic/computational studies on Fe and Mn dependent superoxide dismutases: Insights into second- sphere tuning of active site properties. Acc. Chem. Res., 37: 461-470.
-
(2004)
Acc. Chem. Res.
, vol.37
, pp. 461-470
-
-
Jackson, T.A.1
Brunold, T.C.2
-
374
-
-
40449116114
-
De novo computational design of retroaldol enzymes
-
Jiang, L., Althoff, E.A., Clemente, F.R., Doyle, L., Röthlisberger, D., Zanghellini, A., Gallaher, J.L., Betker, J., Tanaka, F., Barbas, III, C.F., Hilvert, H., Houk, K.A., Stoddard, B.L., and Baker, D. (2008). De novo computational design of retroaldol enzymes. Science, 319: 1387-1391.
-
(2008)
Science
, vol.319
, pp. 1387-1391
-
-
Jiang, L.1
Althoff, E.A.2
Clemente, F.R.3
Doyle, L.4
Röthlisberger, D.5
Zanghellini, A.6
Gallaher, J.L.7
Betker, J.8
Tanaka, F.9
Barbas, C.F.10
Hilvert, H.11
Houk, K.A.12
Stoddard, B.L.13
Baker, D.14
-
375
-
-
23444436172
-
Protein design by binary patterning of polar and nonpolar amino acids
-
Kamtekar, S., Schiffer, J.M., Xiong, H., Babik, J.M., and Hecht, M.H. (1993). Protein design by binary patterning of polar and nonpolar amino acids. Science, 262: 1680-1685.
-
(1993)
Science
, vol.262
, pp. 1680-1685
-
-
Kamtekar, S.1
Schiffer, J.M.2
Xiong, H.3
Babik, J.M.4
Hecht, M.H.5
-
376
-
-
33744522163
-
Nanorotors using asymmetric inorganic nanorods in an optical trap
-
Khan, M., Sood, A.K., Deepak, F.L., and Rao, C.N.R. (2006). Nanorotors using asymmetric inorganic nanorods in an optical trap. Nanotechnology, 17: S287.
-
(2006)
Nanotechnology
, vol.17
-
-
Khan, M.1
Sood, A.K.2
Deepak, F.L.3
Rao, C.N.R.4
-
377
-
-
33750430630
-
Generic hydrophobic residues are sufficient to promote aggregation of the Alzheimer's Abeta42 peptide
-
Kim, W. and Hecht, M.H. (2006). Generic hydrophobic residues are sufficient to promote aggregation of the Alzheimer's Abeta42 peptide. Proc. Natl. Acad. Sci. (USA), 103: 15824-15829.
-
(2006)
Proc. Natl. Acad. Sci. (USA)
, vol.103
, pp. 15824-15829
-
-
Kim, W.1
Hecht, M.H.2
-
378
-
-
0025335121
-
Design and synthesis of a peptide having chymotrypsin- like esterase activity
-
Klis, W.A. and Stewart, J.M. (1990). Design and synthesis of a peptide having chymotrypsin- like esterase activity. Science, 248: 1544-1547.
-
(1990)
Science
, vol.248
, pp. 1544-1547
-
-
Klis, W.A.1
Stewart, J.M.2
-
379
-
-
0030231879
-
Molecular recognition by molecular monolayers, bilayers, and films.
-
Kunitake, T. (1996). Molecular recognition by molecular monolayers, bilayers, and films. Thin Solid Films, 284-285: 9-12.
-
(1996)
Thin Solid Films
, vol.284-285
, pp. 9-12
-
-
Kunitake, T.1
-
380
-
-
0027588112
-
Enzymes in the synthesis of chiral drugs
-
Margolin, A.L. (1993). Enzymes in the synthesis of chiral drugs. Enzyme Microb. Technol., 15: 266-280.
-
(1993)
Enzyme Microb. Technol.
, vol.15
, pp. 266-280
-
-
Margolin, A.L.1
-
381
-
-
56549112362
-
Computational design of biological catalysts, Chem
-
Marti, S., Andres, J., Moliner, V., Silla, E., Tunon, I., and Bertran, J. (2008). Computational design of biological catalysts, Chem. Soc. Rev., 37: 2634-2643.
-
(2008)
Soc. Rev.
, vol.37
, pp. 2634-2643
-
-
Marti, S.1
Andres, J.2
Moliner, V.3
Silla, E.4
Tunon, I.5
Bertran, J.6
-
382
-
-
33751014543
-
Mechanical control of enantioselectivity of amino acid recognition by cholesterol-armed cyclen monolayer at the air-water interface
-
Michinobu, T., Shinoda, S., Nakanishi, T., Hill, J.P., Fuji, K., Player, T.N., Tsukube, H., and Ariga, K. (2006). Mechanical control of enantioselectivity of amino acid recognition by cholesterol-armed cyclen monolayer at the air-water interface. J. Am. Chem. Soc., 128: 14478-14479.
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 14478-14479
-
-
Michinobu, T.1
Shinoda, S.2
Nakanishi, T.3
Hill, J.P.4
Fuji, K.5
Player, T.N.6
Tsukube, H.7
Ariga, K.8
-
383
-
-
18144403554
-
Improving enzyme properties: When are closer mutations better
-
Morley, K.L. and Kazlauskas, R.J. (2005). Improving enzyme properties: When are closer mutations better? Trends Biotech., 23: 231-237.
-
(2005)
Trends Biotech.
, vol.23
, pp. 231-237
-
-
Morley, K.L.1
Kazlauskas, R.J.2
-
384
-
-
0001338954
-
Simplified amino acid alphabets for protein fold recognition and implications for folding
-
Murphy, L.R., Wallqvist, A., and Levy, R.M. (2000). Simplified amino acid alphabets for protein fold recognition and implications for folding. Protein Eng. Des. Sel., 13: 149-152.
-
(2000)
Protein Eng. Des. Sel.
, vol.13
, pp. 149-152
-
-
Murphy, L.R.1
Wallqvist, A.2
Levy, R.M.3
-
385
-
-
0942279303
-
Role of secondary level chiral structure in the process of molecular recognition of ligand: Study of model helical peptide
-
Nandi, N. (2004). Role of secondary level chiral structure in the process of molecular recognition of ligand: Study of model helical peptide. J. Phys. Chem. B., 108: 789-797.
-
(2004)
J. Phys. Chem. B.
, vol.108
, pp. 789-797
-
-
Nandi, N.1
-
386
-
-
0033690126
-
Dielectric relaxation and solvation dynamics of water in complex chemical and biological systems
-
Nandi, N., Bhattacharyya, K., and Bagchi, B. (2000). Dielectric relaxation and solvation dynamics of water in complex chemical and biological systems. Chem. Rev., 100: 2013-2045.
-
(2000)
Chem. Rev.
, vol.100
, pp. 2013-2045
-
-
Nandi, N.1
Bhattacharyya, K.2
Bagchi, B.3
-
387
-
-
0030963838
-
Minimized protein structures: A little goes a long way
-
Nedwidek, M.N. and Hecht, M.H. (1997). Minimized protein structures: A little goes a long way. Proc. Natl. Acad. Sci. (USA), 94: 10010-10011.
-
(1997)
Proc. Natl. Acad. Sci. (USA)
, vol.94
, pp. 10010-10011
-
-
Nedwidek, M.N.1
Hecht, M.H.2
-
388
-
-
0032562571
-
Enzyme structure with two catalytic sites for double-sieve selection of substrate
-
Nureki, O., Vassylyev, D.G., Tateno, M., Shimada, A., Nakama, T., Fukai, S., Konno, M., Hendrickson, T.L., Schimmel, P., Yokoyama, S. (1998). Enzyme structure with two catalytic sites for double-sieve selection of substrate. Science, 280: 578-581.
-
(1998)
Science
, vol.280
, pp. 578-581
-
-
Nureki, O.1
Vassylyev, D.G.2
Tateno, M.3
Shimada, A.4
Nakama, T.5
Fukai, S.6
Konno, M.7
Hendrickson, T.L.8
Schimmel, P.9
Yokoyama, S.10
-
389
-
-
0034637574
-
Assignment of functional amino acids around the active site of human DNA topoisomerase II alpha
-
Okada, Y., Ito, Y., Kikuchi, A., Nimura, Y., Yoshida, S., and Suzuki, M. (2000). Assignment of functional amino acids around the active site of human DNA topoisomerase II alpha. J. Biol. Chem., 275: 24630-24638.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 24630-24638
-
-
Okada, Y.1
Ito, Y.2
Kikuchi, A.3
Nimura, Y.4
Yoshida, S.5
Suzuki, M.6
-
390
-
-
71849104042
-
Enzyme engineering for enantioselectivity: From trial-and-error to rational design
-
Otten, L.G., Hollmann, F., and Arends, I.W.C.E. (2009). Enzyme engineering for enantioselectivity: From trial-and-error to rational design? Trends Biotech., 28: 46-54.
-
(2009)
Trends Biotech.
, vol.28
, pp. 46-54
-
-
Otten, L.G.1
Hollmann, F.2
Arends, I.W.C.E.3
-
391
-
-
0033593453
-
Redesigning the substrate specificity of an enzyme by cumulative effects of the mutations of nonactive site residues
-
Oue, S., Okamoto, A., Yano, T., and Kagamiyama, H. (1999). Redesigning the substrate specificity of an enzyme by cumulative effects of the mutations of nonactive site residues. J. Biol. Chem., 274: 2344-2349.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 2344-2349
-
-
Oue, S.1
Okamoto, A.2
Yano, T.3
Kagamiyama, H.4
-
392
-
-
0030047220
-
Functionalized proteinlike structures from conformationally defined synthetic combinatorial libraries
-
Pérez-Payá, E., Houghten, R.A., and Blondelle, S.E. (1996). Functionalized proteinlike structures from conformationally defined synthetic combinatorial libraries. J. Biol. Chem., 271: 4120-4126.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 4120-4126
-
-
Pérez-Payá, E.1
Houghten, R.A.2
Blondelle, S.E.3
-
393
-
-
0036933840
-
Identification of conserved residue patterns in small ß-barrel proteins
-
Qamra, R., Taneja, B., and Mande, S.C. (2002). Identification of conserved residue patterns in small ß-barrel proteins. Protein Eng. Des. Sel., 15: 967-977.
-
(2002)
Protein Eng. Des. Sel.
, vol.15
, pp. 967-977
-
-
Qamra, R.1
Taneja, B.2
Mande, S.C.3
-
394
-
-
49349091280
-
What we have learned from ribosome structures
-
Ramakrishnan, V. (2008). What we have learned from ribosome structures. Biochem. Soc. Trans., 36: 567-574.
-
(2008)
Biochem. Soc. Trans.
, vol.36
, pp. 567-574
-
-
Ramakrishnan, V.1
-
395
-
-
33847182056
-
Synthesis and selection of de novo proteins that bind and impede cellular functions of an essential mycobacterial protein
-
Rao, A., Ram, G., Saini, A.K., Vohra, R., Kumar, K., Singh, Y., and Ranganathan, A. (2007). Synthesis and selection of de novo proteins that bind and impede cellular functions of an essential mycobacterial protein. Appl. Environ. Microbiol., 73: 1320-1331.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 1320-1331
-
-
Rao, A.1
Ram, G.2
Saini, A.K.3
Vohra, R.4
Kumar, K.5
Singh, Y.6
Ranganathan, A.7
-
396
-
-
0034730144
-
Novel folded protein domains generated by combinatorial shuffling of polypeptide segments
-
Riechmann, L. and Winter, G. (2000). Novel folded protein domains generated by combinatorial shuffling of polypeptide segments. Proc. Natl. Acad. Sci. (USA), 97: 10068-10073.
-
(2000)
Proc. Natl. Acad. Sci. (USA)
, vol.97
, pp. 10068-10073
-
-
Riechmann, L.1
Winter, G.2
-
397
-
-
33846524196
-
DNA and RNA induced enantioselectivity in chemical synthesis
-
Roelfes, G. (2007). DNA and RNA induced enantioselectivity in chemical synthesis. Mol. BioSyst., 3: 126-135.
-
(2007)
Mol. BioSyst.
, vol.3
, pp. 126-135
-
-
Roelfes, G.1
-
398
-
-
43449098518
-
Kemp elimination catalysts by computational enzyme design
-
Röthlisberger, D., Khersonsky, O., Wollacott, A.M., Jiang, L., DeChancie, J., Betker, J., Gallaher, J.L., Althoff, E.A., Zanghellini, A., Dym, O., Albeck, S., Houk, K.A., Tawfik, D.S., and Baker, D. (2008). Kemp elimination catalysts by computational enzyme design. Nature, 453: 190-195.
-
(2008)
Nature
, vol.453
, pp. 190-195
-
-
Röthlisberger, D.1
Khersonsky, O.2
Wollacott, A.M.3
Jiang, L.4
DeChancie, J.5
Betker, J.6
Gallaher, J.L.7
Althoff, E.A.8
Zanghellini, A.9
Dym, O.10
Albeck, S.11
Houk, K.A.12
Tawfik, D.S.13
Baker, D.14
-
399
-
-
0000611517
-
Theoretical study of intermolecular interaction at the lipid-water interface.1. Quantum chemical analysis using a reaction field theory.
-
Sakurai, M., Tamagawa, H., Inous, Y., Ariga, K., and Kunitake, T. (1997a). Theoretical study of intermolecular interaction at the lipid-water interface.1. Quantum chemical analysis using a reaction field theory. J. Phys. Chem. B, 101: 4810-4816.
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 4810-4816
-
-
Sakurai, M.1
Tamagawa, H.2
Inous, Y.3
Ariga, K.4
Kunitake, T.5
-
400
-
-
0000611517
-
Theoretical study of intermolecular interaction at the lipid-water interface. 2 Analysis based on the Poisson-Boltzmann equation
-
Sakurai, M., Tamagawa, H., Inous, Y., Ariga, K., and Kunitake, T. (1997b). Theoretical study of intermolecular interaction at the lipid-water interface. 2. Analysis based on the Poisson-Boltzmann equation. J. Phys. Chem. B, 101: 4817-4825.
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 4817-4825
-
-
Sakurai, M.1
Tamagawa, H.2
Inous, Y.3
Ariga, K.4
Kunitake, T.5
-
401
-
-
0036900263
-
The production of fine chemicals by biotransformations
-
Straathof, A.J., Panke, S., and Schmid, A. (2002). The production of fine chemicals by biotransformations. Curr. Opin. Biotechnol., 13: 548-556.
-
(2002)
Curr. Opin. Biotechnol.
, vol.13
, pp. 548-556
-
-
Straathof, A.J.1
Panke, S.2
Schmid, A.3
-
402
-
-
0036005636
-
Understanding Nature's strategies for enzyme-catalyzed racemization and epimerization
-
Tanner, M.E. (2002). Understanding Nature's strategies for enzyme-catalyzed racemization and epimerization. Acc. Chem. Res. 35: 237-246.
-
(2002)
Acc. Chem. Res.
, vol.35
, pp. 237-246
-
-
Tanner, M.E.1
-
403
-
-
38749138838
-
Molecular dynamics as a pattern recognition tool: An automated process detects peptides that preserve the 3D arrangement of trypsin's active site
-
Tatsis, V.A., Stavrakoudis, A., and Demetropoulos, I.N. (2008). Molecular dynamics as a pattern recognition tool: An automated process detects peptides that preserve the 3D arrangement of trypsin's active site. Biophys. Chem., 133: 36-44.
-
(2008)
Biophys. Chem.
, vol.133
, pp. 36-44
-
-
Tatsis, V.A.1
Stavrakoudis, A.2
Demetropoulos, I.N.3
-
404
-
-
47249163245
-
Exploiting nanospace for asymmetric catalysis: Confinement of immobilized, single-site chiral catalysts enhances enantioselectivity
-
Thomas, J.M. and Raja, R. (2008). Exploiting nanospace for asymmetric catalysis: Confinement of immobilized, single-site chiral catalysts enhances enantioselectivity. Acc. Chem. Res., 41: 708-720.
-
(2008)
Acc. Chem. Res.
, vol.41
, pp. 708-720
-
-
Thomas, J.M.1
Raja, R.2
-
405
-
-
0041430558
-
Controlling chirality
-
Turner, N.J. (2003). Controlling chirality. Curr. Opin. Biotechnol., 14: 401-406.
-
(2003)
Curr. Opin. Biotechnol.
, vol.14
, pp. 401-406
-
-
Turner, N.J.1
-
406
-
-
0034723191
-
De novo design of peptides targeted to the EF hands of calmodulin
-
Villain, M., Jackson, P.L., Manion, M.K., Dong, W.-J., Su, Z., Fassina, G., Johnson, T.M., Sakai, T.T., Krishna, N.R., and Blalock, J.E. (2000). De novo design of peptides targeted to the EF hands of calmodulin. J. Biol. Chem., 275: 2676-2685.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 2676-2685
-
-
Villain, M.1
Jackson, P.L.2
Manion, M.K.3
Dong, W.-J.4
Su, Z.5
Fassina, G.6
Johnson, T.M.7
Sakai, T.T.8
Krishna, N.R.9
Blalock, J.E.10
-
407
-
-
27844496157
-
An active enzyme constructed from a 9-amino acid alphabet
-
Walter, K.U., Vamvaca, K., and Hilvert, D. (2005). An active enzyme constructed from a 9-amino acid alphabet. J. Biol. Chem., 280: 37742-37746.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 37742-37746
-
-
Walter, K.U.1
Vamvaca, K.2
Hilvert, D.3
-
408
-
-
0037022661
-
Rationally designed mutations convert de novo amyloid-like fibrils into monomeric beta-sheet proteins
-
Wang, W. and Hecht, M.H. (2002). Rationally designed mutations convert de novo amyloid-like fibrils into monomeric beta-sheet proteins. Proc. Natl. Acad. Sci. (USA), 99: 2760-2765.
-
(2002)
Proc. Natl. Acad. Sci. (USA)
, vol.99
, pp. 2760-2765
-
-
Wang, W.1
Hecht, M.H.2
-
409
-
-
0344392714
-
Solution structure of a de novo protein from a designed combinatorial library
-
Wei, Y., Kim, S., Fela, D., Baum, J., and Hecht, M.H. (2003). Solution structure of a de novo protein from a designed combinatorial library. Proc. Natl. Acad. Sci. (USA), 100: 13270-13273.
-
(2003)
Proc. Natl. Acad. Sci. (USA)
, vol.100
, pp. 13270-13273
-
-
Wei, Y.1
Kim, S.2
Fela, D.3
Baum, J.4
Hecht, M.H.5
-
410
-
-
0842270116
-
Enzyme-like proteins from an unselected library of designed amino acid sequences
-
Wei, Y. and Hecht, M.H. (2004). Enzyme-like proteins from an unselected library of designed amino acid sequences. Protein Eng. Des. Sel., 17: 67-75.
-
(2004)
Protein Eng. Des. Sel.
, vol.17
, pp. 67-75
-
-
Wei, Y.1
Hecht, M.H.2
-
411
-
-
0033613188
-
De novo amyloid proteins from designed combinatorial libraries
-
West, M.W., Wang, W., Patterson, J., Mancias, J.D., Beasley, J.R., and Hecht, M.H. (1999). De novo amyloid proteins from designed combinatorial libraries. Proc. Natl. Acad. Sci. (USA), 96: 11211-11216.
-
(1999)
Proc. Natl. Acad. Sci. (USA)
, vol.96
, pp. 11211-11216
-
-
West, M.W.1
Wang, W.2
Patterson, J.3
Mancias, J.D.4
Beasley, J.R.5
Hecht, M.H.6
-
412
-
-
13844314290
-
Metalloporphyrines as active site analogues-lessons from enzymes and enzyme models
-
Woggon, W.-D. (2005). Metalloporphyrines as active site analogues-lessons from enzymes and enzyme models. Acc. Chem. Res., 38: 127-136.
-
(2005)
Acc. Chem. Res.
, vol.38
, pp. 127-136
-
-
Woggon, W.-D.1
-
413
-
-
0033564943
-
Interchange of catalytic activity within the 2-enoyl-coenzyme A hydratase/isomerase superfamily based on a common active site template
-
Xiang, H., Luo, L., Taylor, K.L., and Dunaway-Mariano, D. (1999). Interchange of catalytic activity within the 2-enoyl-coenzyme A hydratase/isomerase superfamily based on a common active site template. Biochemistry, 38: 7638-7652.
-
(1999)
Biochemistry
, vol.38
, pp. 7638-7652
-
-
Xiang, H.1
Luo, L.2
Taylor, K.L.3
Dunaway-Mariano, D.4
-
414
-
-
0037473526
-
Chiral molecular assemblies from a novel achiral amphiphilic 2-(heptadecyl) naphtha[2,3]imidazole through interfacial coordination
-
Yuan, J. and Liu, M. (2003). Chiral molecular assemblies from a novel achiral amphiphilic 2-(heptadecyl) naphtha[2,3]imidazole through interfacial coordination. J. Am. Chem. Soc., 125: 5051-5056.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 5051-5056
-
-
Yuan, J.1
Liu, M.2
|