Solution structure of a de novo protein from a designed combinatorial library

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 23, 2003, Pages 13270-13273

  Wei, Yinan ^a   Kim, Seho ^b   Fela, David ^b   Baum, Jean ^b   Hecht, Michael H ^a  

^a PRINCETON UNIVERSITY   (United States)

^b RUTGERS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN; PROTEIN S 824; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CALCULATION; COMBINATORIAL LIBRARY; HYDROPHILICITY; HYDROPHOBICITY; MOLECULAR WEIGHT; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FOLDING; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING;

AMINO ACID SEQUENCE; ESCHERICHIA COLI; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPTIDE LIBRARY; PROTEIN CONFORMATION; PROTEIN ENGINEERING; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; SEQUENCE HOMOLOGY, AMINO ACID; SOLVENTS;

EID: 0344392714     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.1835644100     Document Type: Article

References (31)

1. DeGrado, W. F., Summa, C. M., Pavone, V., Nastri, F. & Lombardi, A. (1999) Annu. Rev. Biochem. 68, 779-819.
2. Dahiyat, B. I. & Mayo, S. L. (1997) Science 278, 82-87.
3. Keefe, A. D. & Szostak, J. W. (2001) Nature 410, 715-718.
4. Kamtekar, S., Schiffer, J. M., Xiong, H., Babik, J. M. & Hecht, M. H. (1993) Science 262, 1680-1685.
5. West, M. W., Wang, W., Patterson, J., Mancias, J. D., Beasley, J. R. & Hecht, M. H. (1999) Proc. Natl. Acad. Sci. USA 96, 11211-11216.
6. Wang, W. & Hecht, M. H. (2002) Proc. Natl. Acad. Sci. USA 99, 2760-2765.
7. Rojas, N. R. L., Kamtekar, S., Simons, C. T., Mclean, J. E., Vogel, K. M., Spiro, T. G., Farid, R. S. & Hecht, M. H. (1997) Protein Sci. 6, 2512-2524.
8. Moffet, D. A., Certain, L. K., Smith, A. J., Kessel, A. J., Beckwith, K. A. & Hecht, M. H. (2000) J. Am. Chem. Soc. 122, 7612-7613.
9. Brown, C. L., Aksay, I. A., Saville, D. A. & Hecht, M. H. (2002) J. Am. Chem. Soc. 124, 6846-6848.
10. Wei, Y., Liu, T., Sazinsky, S. L., Moffet, D. A., Pelczer, I. & Hecht, M. H. (2003) Protein Sci. 12, 92-102.
11. Wei, Y., Fela, D., Kim, S., Hecht, M. H. & Baum, J. (2003) J. Biomol. NMR 27, 395-396.
12. Wishart, D. S., Bigam, C. G., Yao, J., Abildgaard, F., Dyson, H. J., Oldfield, E., Markley, J. L. & Sykes, B. D. (1995) J. Biomol. NMR 6, 135-140.
13. Wuthrich, K. (1986) NMR of Proteins and Nucleic Acids (Wiley, New York).
14. Geerten, V. W. & Bax, A. (1993) J. Am. Chem. Soc. 115, 7772-7777.
15. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J., Kuszewski, J., Nilges, M., Pannu, N. S., et al. (1998) Acta Crystallogr. D 54, 905-921.
16. Stein, E. G., Rice, L. M. & Brunger, A. T. (1997) J. Magn. Reson. 124, 154-164.
17. Roy, S., Ratnaswamy, G., Boice, J. A., Fairman, R., McLendon, G. & Hecht, M. H. (1997) J. Am. Chem. Soc. 119, 5302-5306.
18. Rosenbaum, D. M., Roy, S. & Hecht, M. H. (1999) J. Am. Chem. Soc. 121, 9509-9513.
19. Roy, S. & Hecht, M. H. (2000) Biochemistry 39, 4603-4607.
20. Fairman, R., Chao, H., Mueller, L., Lavoie, T. B., Shen, L., Novotny, J. & Matsueda, G. R. (1995) Protein Sci. 4, 1457-1469.
21. Litowski, J. R. & Hodges, R. S. (2001) J. Peptide Res. 58, 477-492.
22. Güntert, P. (1998) Q. Rev. Biophys. 31, 145-237.
23. Richardson, J. S. & Richardson, D. C. (1989) in Prediction of Protein Structure and Principles of Protein Conformation, ed. Fasman, G. (Plenum, New York), pp. 1-98.
24. Crick, F. H. C. (1953) Acta Crystallogr. 6, 689-697.
25. Lederer, F., Glatigny, A., Bethge, P. H., Bellamy, H. D. & Mathews, F. S. (1981) J. Mol. Biol. 148, 427-448.
26. Smith, G. P. (1985) Science 228, 1315-1317.
27. Hanes, J. & Plückthun, A. (1997) Proc. Natl. Acad. Sci. USA 94, 4937-4942.
28. Davidson, A. R., Lumb, K. J. & Sauer, R. T. (1995) Nat. Struct. Biol. 2,856-864.
29. Mandecki, W. (1990) Protein Eng. 3, 221-226.
30. Laskowski, R. A., Macarthur, M. W., Moss, D. S. & Thornton, J. M. (1993) J. Appl. Chrystallogr. 26, 283-291.
31. Lovell, S. C., Davis, I. W., Arendall, W. B., III, de Bakker, P. I. W., Word, J. M., Prisant, M. G., Richardson, J. S. & Richardson, D. C. (2003) Proteins Struct. Funct. Genet. 50, 437-450.