Protein design: The choice of de novo sequences

Journal of Biological Chemistry

Volumn 272, Issue 4, 1997, Pages 2031-2034

  Beasley, James R ^a   Hecht, Michael H ^a  

^a PRINCETON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; PEPTIDE SYNTHESIS; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; REVIEW; STRUCTURE ACTIVITY RELATION;

DRUG DESIGN; MODELS, CHEMICAL; PROTEIN STRUCTURE, SECONDARY; PROTEINS;

EID: 0031029551     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.272.4.2031     Document Type: Review

References (57)

1. Mandecki, W. (1990) Protein Eng. 3, 221-226
2. Davidson, A. R., and Sauer, R. T. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 2146-2150
3. Davidson, A. R., Lumb, K. J., and Sauer, R. T. (1995) Nat. Struct. Biol. 2, 856-864
4. Bowie, J. U., Reidhaar-Olson, J. F., Lim, W. A., and Sauer, R. T. (1990) Science 247, 1306-1310
5. Rennell, D., Bouvier, S. E., Hardy, L. W., and Poteete, A. R. (1991) J. Mol. Biol. 222, 67-87
6. Baldwin, E. P., and Matthews, B. W. (1994) Curr. Opin. Biotechnol. 5, 396-402
7. Xiong, H., Buckwalter, B. L., Shieh, H.-M., and Hecht, M. H. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 6349-6353
8. West, M. W., and Hecht, M. H. (1995) Protein Sci. 4, 2032-2039
9. Kamtekar, S., Schiffer, J. M., Xiong, H., Babik, J. M., and Hecht, M. H. (1993) Science 262, 1680-1685
10. Chou, P. Y., and Fasman, G. D. (1978) Annu. Rev. Biochem. 47, 251-276
11. Wojcik, J., Altmann, K. H., and Scheraga, H. A. (1990) Biopolymers 30, 121-134
12. O'Neil, K. T., and DeGrado, W. F. (1990) Science 250, 646-651
13. Horovitz, A., Matthews, J. M., and Fersht, A. R. (1992) J. Mol. Biol. 227, 560-568
14. Blaber, M., Zhang, X.-J., and Matthews, B. W. (1993) Science 260, 1637-1640
15. Chakrabartty, A., Kortemme, T., and Baldwin, R. L. (1994) Protein Sci. 3, 843-852
16. Muñoz, V., and Serrano, L. (1994) Proteins Struct. Fund. Genet. 20, 301-311
17. Kim, C., and Berg, J. M. (1993) Nature 362, 267-270
18. Smith, C. K., Withka, J. M., and Regan, L. (1994) Biochemistry 33, 5510-5517
19. Minor, D. L., Jr., and Kim, P. S. (1994) Nature 367, 660-663
20. Minor, D. L., Jr., and Kim, P. S. (1994) Nature 371, 264-267
21. Argos, P. (1987) J. Mol. Biol. 197, 331-348
22. Cohen, B. I., Presnell, S. R., and Cohen, F. E. (1993) Protein Sci. 2, 2134-2146
23. Minor, D. L., Jr., and Kim, P. S. (1996) Nature 380, 730-734
24. Taniuchi, H., Parr, G. R., and Juillerat, M. A. (1986) Methods Enzymol. 131, 185-217
25. Goldenberg, D. P., and Creighton, T. E. (1983) J. Mol. Biol. 165, 407-413
26. Luger, K., Hommel, U., Herold, M., Hofsteenge, J., and Kirschner, K. (1989) Science 243, 206-210
27. Garrett, J. B., Mullins, L. S., and Raushel, F. M. (1996) Protein Sci. 5, 204-211
28. Brunet, A. P., Huang, E. S., Huffine, M. E., Loeb, J. E., Weltman, R. J., and Hecht, M. H. (1993) Nature 364, 355-358
29. Castagnoli, L., Vertiani, C., and Cesarini, G. (1994) J. Mol. Biol. 237, 378-387
30. Vlassi, M., Steif, C., Weber, P., Tsernoglou, D., Wilson, K. S., Hinz, H.-J., and Kokkinidis, M. (1994) Nat. Struct. Biol. 1, 706-716
31. Ku, J., and Schultz, P. G. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 6552-6556
32. Van Geel, A. E. (1993) The Role of Turns in Protein Folding and Stability. Thesis, Princeton University
33. Predki, P. F., and Regan, L. (1995) Biochemistry 34, 9834-9839
34. Predki, P. F., Agrawai, V., Brunger, A. T., and Regan, L. (1996) Nat. Struct. Biol. 3, 54-58
35. Brunet, A. (1996) Analysis of the Information in a Turn of Cytochrome 6562. Ph.D. dissertation, Princeton University
36. Ybe, J. A., and Hecht, M. H. (1996) Protein Sci. 5, 814-824
37. Zhou, H. X., Hoess, R. H., and DeGrado, W. F. (1996) Nat. Struct. Biol. 3, 446-452
38. Van, Y., and Erickson, B. W. (1994) Protein Sci. 3, 1069-1073
39. Struthers, M. D., Cheng, R. P., and Imperiali, B. (1996) Science 271, 342-345
40. Richards, F. M., and Lim, W. (1993) Q. Rev. Biophys. 26, 423-498
41. Eriksson, A. E., Baase, W. A., Zhang, X.-J., Heinz, D. W., Blaber, M., Baldwin, E. P., and Matthews, B. W. (1992) Science 255, 178-182
42. Jackson, S. E., Moracci, M., elMasry, N., Johnson, C. M., and Fersht, A. R. (1993) Biochemistry 32, 11259-11269
43. Buckle, A. M., Cramer, P., and Fersht, A. R. (1996) Biochemistry 35, 4298-4305
44. Lim, W. A., Hodel, A., Sauer, R. T., and Richards, F. M. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 423-427
45. Munson, M., O'Brien, R., Sturtevant, J. M., and Regan, L. (1994) Protein Sci. 3, 2015-2022
46. Munson, M., Balasubramanian, S., Fleming, K. G., Nagi, A. D., O'Brien, R., Sturtevant, J. M., and Regan, L. (1996) Protein Sci. 5, 1584-1593
47. Harbury P. B., Zhang, T., Kim, P. S., and Alber, T. (1993) Science 262, 1401-1407
48. Gonzales, L., Jr., Plecs, J. J., and Alber, T. (1996) Nat. Struct. Biol. 3, 510-515
49. Bromberg, S., and Dill, K. A. (1994) Protein Sci. 3, 997-1009
50. Behe, M. J., Lattman, E. E., and Rose, G. D. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 4195-4199
51. Axe, D. D., Poster, N. W., and Fersht, A. R. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 5590-5594
52. Hecht, M. H., Richardson, J. S., Richardson, D. C., and Ogden, R. C. (1990) Science 249, 884-891
53. Regan, L., and DeGrado, W. F. (1988) Science 241, 976-978
54. Dill, K. A., Bromberg, S., Yue, K., Fiebig, K. M., Yee, D. P., Thomas, P. D., and Chan, H. S. (1995) Protein Sci. 4, 561-602
55. Raleigh, D. P., Betz, S. F., and DeGrado, W. F. (1995) J. Am. Chem. Soc. 117, 7558-7559
56. Hecht, M. H. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 8729-8730
57. Taylor, W. (1992) Nature 356, 478-480